CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 156 1.4E-13 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 SUPERFAMILY SSF88659 98 156 9.35E-10 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 Gene3D G3DSA:1.10.1740.10 6 78 1.5E-14 T 06-07-2017 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 SUPERFAMILY SSF54427 166 284 3.8E-13 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 SUPERFAMILY SSF88946 11 95 2.28E-14 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 Gene3D G3DSA:3.10.450.50 166 276 9.2E-10 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 Pfam PF04542 Sigma-70 region 2 15 77 2.9E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 Pfam PF08281 Sigma-70, region 4 104 153 6.8E-10 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30745 9248cd860ac99a408e20e6fb6a8d9096 285 Gene3D G3DSA:1.10.10.10 104 157 2.1E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 Gene3D G3DSA:1.10.10.60 271 320 3.1E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 Pfam PF01965 DJ-1/PfpI family 41 178 1.7E-18 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 SMART SM00342 233 316 1.6E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 SUPERFAMILY SSF46689 216 263 7.08E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 Gene3D G3DSA:3.40.50.880 14 222 4.4E-48 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 SUPERFAMILY SSF46689 269 319 1.08E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 SUPERFAMILY SSF52317 12 199 2.75E-44 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 Gene3D G3DSA:1.10.10.60 223 270 1.8E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31650 cca2248bb9134d947fc49762afe8b4a9 326 Pfam PF12833 Helix-turn-helix domain 239 317 4.8E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS26550 15051e2c6361afbbf5fa378770876b0e 400 Pfam PF11294 Protein of unknown function (DUF3095) 9 380 2.7E-139 T 06-07-2017 IPR021445 Protein of unknown function DUF3095 CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 82 99 - T 06-07-2017 IPR018488 Cyclic nucleotide-binding, conserved site CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 SUPERFAMILY SSF51206 8 140 3.54E-34 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 Gene3D G3DSA:2.60.120.10 8 145 5.1E-34 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 PRINTS PR00103 cAMP-dependent protein kinase signature 51 65 1.6E-8 T 06-07-2017 CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 PRINTS PR00103 cAMP-dependent protein kinase signature 80 89 1.6E-8 T 06-07-2017 CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 PRINTS PR00103 cAMP-dependent protein kinase signature 92 103 1.6E-8 T 06-07-2017 CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 PRINTS PR00103 cAMP-dependent protein kinase signature 36 50 1.6E-8 T 06-07-2017 CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 Pfam PF00027 Cyclic nucleotide-binding domain 35 118 2.4E-20 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS26615 746002605d5cf909b0c35085a9d3008c 154 SMART SM00100 15 132 2.7E-22 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 479 1.5E-176 T 06-07-2017 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 362 470 1.2E-36 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 Gene3D G3DSA:3.30.390.30 348 478 2.2E-46 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PIRSF PIRSF000350 1 475 1.0E-75 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 SUPERFAMILY SSF55424 358 479 2.06E-39 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 Gene3D G3DSA:3.50.50.60 160 347 3.7E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 Gene3D G3DSA:3.50.50.60 3 159 4.2E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 445 465 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 438 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 358 379 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 163 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 293 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 321 328 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 190 215 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.1E-65 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 341 4.0E-70 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 190 208 3.3E-36 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.3E-36 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 306 328 3.3E-36 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 278 294 3.3E-36 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 151 169 3.3E-36 T 06-07-2017 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS03135 60a05720bfa112433b0238790b9a3dbf 481 SUPERFAMILY SSF51905 1 389 7.28E-70 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS17955 973139f6c6ab0b0d62fdfe4b8b494093 412 SUPERFAMILY SSF56349 123 404 1.0E-38 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS17955 973139f6c6ab0b0d62fdfe4b8b494093 412 Gene3D G3DSA:1.10.443.10 227 404 2.6E-36 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS17955 973139f6c6ab0b0d62fdfe4b8b494093 412 Pfam PF00589 Phage integrase family 227 397 7.2E-29 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS17955 973139f6c6ab0b0d62fdfe4b8b494093 412 Gene3D G3DSA:1.10.150.130 115 207 3.9E-7 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS17955 973139f6c6ab0b0d62fdfe4b8b494093 412 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 116 200 4.8E-16 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 Pfam PF00005 ABC transporter 22 169 3.1E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 SUPERFAMILY SSF52540 4 250 1.45E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 SUPERFAMILY SSF50331 244 364 1.16E-12 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 SMART SM00382 30 227 1.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31385 3c0ec8dc6f1943558392d1cb27488597 377 Gene3D G3DSA:3.40.50.300 2 242 2.4E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 SMART SM00387 212 321 1.4E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 Gene3D G3DSA:3.30.450.20 1 75 3.2E-8 T 06-07-2017 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 Gene3D G3DSA:3.30.565.10 173 318 2.8E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 SUPERFAMILY SSF47384 94 165 9.22E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 SUPERFAMILY SSF55874 157 322 2.49E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 SUPERFAMILY SSF55785 1 86 6.11E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 Pfam PF00512 His Kinase A (phospho-acceptor) domain 100 168 9.5E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 252 266 1.6E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 299 1.6E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 318 1.6E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 280 1.6E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1 84 4.4E-18 T 06-07-2017 IPR000014 PAS domain CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 SMART SM00388 99 170 3.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 Gene3D G3DSA:1.10.287.130 97 164 2.9E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22740 d91a6caaf03827cc25e7927f5106b557 329 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 213 319 2.1E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 SUPERFAMILY SSF81271 283 364 2.4E-36 T 06-07-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 367 43.534 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 SUPERFAMILY SSF52540 3 305 2.8E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Pfam PF01926 50S ribosome-binding GTPase 5 117 5.5E-24 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.9E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 3.9E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 3.9E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 3.9E-35 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 3.8E-153 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Gene3D G3DSA:3.10.20.30 272 366 2.6E-50 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Gene3D G3DSA:1.10.150.300 133 202 1.5E-22 T 06-07-2017 IPR023192 TGS-like domain CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 PIRSF PIRSF006641 1 367 3.3E-156 T 06-07-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Gene3D G3DSA:3.40.50.300 4 132 5.4E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Gene3D G3DSA:3.40.50.300 203 271 5.4E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15435 a0416368c60718e7717bbe1e5fecaf38 367 Pfam PF06071 Protein of unknown function (DUF933) 283 366 1.1E-40 T 06-07-2017 IPR013029 Domain of unknown function DUF933 CDO28_RS05540 bd02518e79ead0c6f267fe0c17e8bef4 143 Pfam PF05443 ROS/MUCR transcriptional regulator protein 13 135 2.4E-50 T 06-07-2017 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 Gene3D G3DSA:3.40.50.280 549 706 3.3E-59 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 SUPERFAMILY SSF52242 549 705 1.31E-51 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 580 707 5.9E-54 T 06-07-2017 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 Gene3D G3DSA:3.20.20.240 25 493 4.7E-209 T 06-07-2017 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 26 544 3.6E-266 T 06-07-2017 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 Pfam PF01642 Methylmalonyl-CoA mutase 28 540 9.9E-241 T 06-07-2017 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 Pfam PF02310 B12 binding domain 582 697 1.3E-18 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 369 394 - T 06-07-2017 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS30010 e750436ce91a53c004ebc7b1ddefacb1 712 SUPERFAMILY SSF51703 3 542 6.8E-227 T 06-07-2017 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 SUPERFAMILY SSF47616 82 215 7.8E-29 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 Gene3D G3DSA:1.20.1050.10 95 213 2.4E-28 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 90 4.6E-7 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 SUPERFAMILY SSF52833 1 90 4.67E-14 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 Pfam PF00043 Glutathione S-transferase, C-terminal domain 135 205 6.0E-13 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS05750 6f58d5486ad9d76ab194625ae08feca2 219 Gene3D G3DSA:3.40.30.10 2 94 1.0E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Gene3D G3DSA:3.40.50.970 363 563 1.7E-71 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Gene3D G3DSA:3.40.50.1220 193 362 7.4E-61 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 401 548 3.6E-47 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 SUPERFAMILY SSF52518 6 183 1.64E-65 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 335 1.7E-42 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 8 571 9.4E-241 T 06-07-2017 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 SUPERFAMILY SSF52518 377 577 6.97E-66 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Gene3D G3DSA:3.40.50.970 7 183 1.3E-76 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 437 456 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 SUPERFAMILY SSF52467 192 366 3.07E-63 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS16725 5b16f3215b2a4e8885fd441a923ed024 592 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 172 2.3E-59 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS32085 b8d97d8c508aff099913c08b37a0e6c8 376 Gene3D G3DSA:2.120.10.30 27 375 1.6E-106 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS32085 b8d97d8c508aff099913c08b37a0e6c8 376 Pfam PF07995 Glucose / Sorbosone dehydrogenase 46 371 2.2E-133 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS32085 b8d97d8c508aff099913c08b37a0e6c8 376 SUPERFAMILY SSF50952 24 375 1.96E-47 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 Gene3D G3DSA:3.30.420.40 4 248 3.6E-47 T 06-07-2017 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 SUPERFAMILY SSF53067 4 248 5.04E-50 T 06-07-2017 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 247 1.8E-30 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 Gene3D G3DSA:3.30.420.40 250 491 4.6E-45 T 06-07-2017 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 PIRSF PIRSF000538 1 499 3.6E-82 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 SUPERFAMILY SSF53067 251 494 2.54E-47 T 06-07-2017 CDO28_RS28495 7f4a57e3e66ff6946ce4b608d8229d8d 509 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 445 2.7E-39 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS26260 3acfb77adb14a832da7d97137500785e 535 SUPERFAMILY SSF52096 26 269 2.7E-72 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26260 3acfb77adb14a832da7d97137500785e 535 Gene3D G3DSA:3.90.226.10 278 530 1.6E-87 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26260 3acfb77adb14a832da7d97137500785e 535 Gene3D G3DSA:3.90.226.10 34 270 2.2E-81 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26260 3acfb77adb14a832da7d97137500785e 535 SUPERFAMILY SSF52096 237 517 9.05E-84 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26260 3acfb77adb14a832da7d97137500785e 535 Pfam PF01039 Carboxyl transferase domain 48 525 2.9E-146 T 06-07-2017 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 Pfam PF01580 FtsK/SpoIIIE family 488 707 3.8E-65 T 06-07-2017 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 Gene3D G3DSA:3.40.50.300 660 772 7.9E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 Gene3D G3DSA:3.40.50.300 465 627 7.9E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 SUPERFAMILY SSF52540 475 777 2.93E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 SMART SM00382 523 728 4.8E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 Pfam PF09397 Ftsk gamma domain 813 872 7.1E-26 T 06-07-2017 IPR018541 FtsK gamma domain CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 SMART SM00843 811 875 1.1E-37 T 06-07-2017 IPR018541 FtsK gamma domain CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 SUPERFAMILY SSF46785 812 874 4.63E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11390 eadf0ded6eba26ebf9dde07e1a51a0f5 881 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 27 168 3.2E-18 T 06-07-2017 IPR025199 DNA translocase FtsK, 4TM region CDO28_RS06200 c6a0ab018ecfaf2676e9db7b0107ce6d 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 248 1.2E-42 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS06200 c6a0ab018ecfaf2676e9db7b0107ce6d 250 Gene3D G3DSA:3.90.226.10 3 249 2.1E-55 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS06200 c6a0ab018ecfaf2676e9db7b0107ce6d 250 SUPERFAMILY SSF52096 2 249 9.75E-57 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 Gene3D G3DSA:3.20.20.70 17 308 4.6E-45 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 PIRSF PIRSF001365 14 314 2.4E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 SMART SM01130 17 307 3.7E-28 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 144 161 1.8E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 50 71 1.8E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 86 104 1.8E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 SUPERFAMILY SSF51569 16 307 6.07E-43 T 06-07-2017 CDO28_RS22045 8254642ee7c137128be7dc477acc3656 320 Pfam PF00701 Dihydrodipicolinate synthetase family 18 292 6.1E-19 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS28885 166f61d746d3bd91ad9826dd82539f08 119 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 65 1.4E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28885 166f61d746d3bd91ad9826dd82539f08 119 SUPERFAMILY SSF46785 13 66 2.45E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28885 166f61d746d3bd91ad9826dd82539f08 119 Gene3D G3DSA:1.10.10.10 14 76 4.2E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 Gene3D G3DSA:3.40.50.880 12 217 2.2E-36 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 Pfam PF12833 Helix-turn-helix domain 246 323 5.2E-24 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 Gene3D G3DSA:1.10.10.60 222 276 2.0E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 SUPERFAMILY SSF52317 12 205 2.66E-40 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 SUPERFAMILY SSF46689 225 274 1.57E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 277 319 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 SUPERFAMILY SSF46689 276 325 6.27E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 Pfam PF01965 DJ-1/PfpI family 24 184 1.0E-13 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 SMART SM00342 240 323 2.9E-28 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS17360 32d3046d1d1a10769e48721861d89f53 334 Gene3D G3DSA:1.10.10.60 277 325 3.7E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Gene3D G3DSA:1.10.540.10 38 156 8.8E-20 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 587 4.2E-17 T 06-07-2017 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 155 6.2E-15 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Gene3D G3DSA:1.20.140.10 265 460 3.3E-56 T 06-07-2017 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 SUPERFAMILY SSF47203 285 460 1.26E-46 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 160 268 1.0E-15 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 415 434 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Gene3D G3DSA:2.40.110.10 159 264 3.3E-25 T 06-07-2017 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 SUPERFAMILY SSF56645 37 269 5.76E-58 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS06205 8182da888f47e8d9649db72a44867d7e 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 453 3.2E-25 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 5.1E-20 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 Pfam PF00005 ABC transporter 25 184 2.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 SMART SM00382 34 242 2.3E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 316 5.0E-23 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 Gene3D G3DSA:3.40.50.300 3 263 9.6E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24330 d90deaab9b066d3bb370714c19335d00 328 SUPERFAMILY SSF52540 5 255 2.22E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 6.2E-41 T 06-07-2017 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 Gene3D G3DSA:3.30.860.10 2 91 1.6E-40 T 06-07-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 06-07-2017 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.291 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 PIRSF PIRSF002144 1 92 7.3E-32 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 SUPERFAMILY SSF54570 3 84 3.79E-34 T 06-07-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.5E-21 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.5E-21 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.5E-21 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03610 8e77839c74e9273ba09ce1297530b56e 92 Pfam PF00203 Ribosomal protein S19 3 83 7.7E-36 T 06-07-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS08625 d551509eaccf581f8399a2f2bd040c06 186 Pfam PF03968 OstA-like protein 50 163 3.4E-23 T 06-07-2017 IPR005653 Organic solvent tolerance-like, N-terminal CDO28_RS08625 d551509eaccf581f8399a2f2bd040c06 186 Gene3D G3DSA:2.60.450.10 43 176 6.6E-31 T 06-07-2017 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 Pfam PF00355 Rieske [2Fe-2S] domain 43 119 5.6E-17 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 SUPERFAMILY SSF50022 9 152 6.02E-47 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 176 399 1.3E-40 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 SUPERFAMILY SSF55961 155 400 8.63E-54 T 06-07-2017 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 Gene3D G3DSA:3.90.380.10 146 395 1.5E-18 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 1.1E-24 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 175 197 1.1E-24 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 1.1E-24 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 1.1E-24 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 1.1E-24 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS06235 ca483c1c41c742945cca50a97d21b5bc 414 Gene3D G3DSA:2.102.10.10 41 145 4.9E-36 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SUPERFAMILY SSF47384 887 972 1.39E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SMART SM00388 902 971 2.1E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1090 1108 6.6E-7 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1055 1069 6.6E-7 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1114 1127 6.6E-7 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Pfam PF00989 PAS fold 769 825 2.6E-7 T 06-07-2017 IPR013767 PAS fold GO:0006355 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Pfam PF00512 His Kinase A (phospho-acceptor) domain 903 971 6.4E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 770 889 3.0E-13 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Gene3D G3DSA:3.30.565.10 958 1128 9.3E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Pfam PF13188 PAS domain 648 684 0.065 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Gene3D G3DSA:3.30.450.20 698 732 4.5E-4 T 06-07-2017 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Gene3D G3DSA:3.30.450.20 354 409 4.5E-4 T 06-07-2017 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Gene3D G3DSA:1.10.287.130 895 957 2.7E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SUPERFAMILY SSF55874 960 1128 2.23E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1018 1128 1.3E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SMART SM00091 643 710 160.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SMART SM00091 339 408 2.9 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SMART SM00091 768 834 2.1E-10 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SUPERFAMILY SSF55785 779 890 6.73E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 SMART SM00387 1017 1130 9.3E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07020 c16759e3e1eb037c0f01c06e783f6b97 1134 Gene3D G3DSA:3.30.450.20 762 880 6.7E-16 T 06-07-2017 CDO28_RS15730 16731747ee43059392f48c184b453385 155 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 111 2.2E-13 T 06-07-2017 CDO28_RS15730 16731747ee43059392f48c184b453385 155 SUPERFAMILY SSF54593 8 147 1.72E-16 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS15730 16731747ee43059392f48c184b453385 155 Gene3D G3DSA:3.10.180.10 8 135 7.9E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 Gene3D G3DSA:3.40.640.10 6 288 6.4E-111 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 7 423 4.5E-188 T 06-07-2017 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 SUPERFAMILY SSF53383 6 423 1.86E-125 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 PIRSF PIRSF001434 1 426 3.0E-124 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 Gene3D G3DSA:3.90.1150.10 290 425 8.4E-52 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS04235 402655ac5f3df2ff9811853f4ff9521e 426 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 423 3.2E-137 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 240 102.023 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 Gene3D G3DSA:3.40.1280.10 3 160 2.3E-61 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 SUPERFAMILY SSF75217 2 233 1.18E-90 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 25 221 4.5E-50 T 06-07-2017 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 Gene3D G3DSA:1.10.1270.20 161 232 1.2E-27 T 06-07-2017 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 5 228 1.4E-77 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDO28_RS11115 07319ff1f0cb04ca0ab48486f3379e73 240 PIRSF PIRSF000386 3 237 1.1E-89 T 06-07-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDO28_RS11125 722c856500dd0ad1b1ed54462e482e41 124 Gene3D G3DSA:3.30.1320.10 3 83 9.9E-34 T 06-07-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11125 722c856500dd0ad1b1ed54462e482e41 124 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 24.536 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11125 722c856500dd0ad1b1ed54462e482e41 124 Pfam PF00886 Ribosomal protein S16 9 70 6.5E-27 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11125 722c856500dd0ad1b1ed54462e482e41 124 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 4.9E-33 T 06-07-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11125 722c856500dd0ad1b1ed54462e482e41 124 SUPERFAMILY SSF54565 3 87 1.7E-31 T 06-07-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 SUPERFAMILY SSF52540 347 588 1.09E-91 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 Gene3D G3DSA:1.20.1560.10 33 334 1.2E-58 T 06-07-2017 CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 Pfam PF00005 ABC transporter 368 517 7.7E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 SMART SM00382 377 563 2.7E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 Gene3D G3DSA:3.40.50.300 351 581 1.3E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 Pfam PF00664 ABC transporter transmembrane region 37 299 3.3E-35 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS33380 8158e151c9fce7c2542bf574a58dcc7e 601 SUPERFAMILY SSF90123 29 334 9.94E-60 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 3379 3835 1.7E-95 T 06-07-2017 IPR006315 Outer membrane autotransporter barrel GO:0019867 CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 2337 2511 2.5E-14 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 638 979 2.0E-8 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 1299 1647 1.1E-6 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 3204 3503 9.6E-50 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 2878 3172 9.6E-50 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 1648 2075 4.4E-12 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Gene3D G3DSA:2.160.20.20 1085 1288 4.1E-4 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 3266 3496 6.28E-40 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 1100 1587 1.88E-17 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 1600 1733 9.73E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1421 1451 1.1E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1223 1250 1.6E-5 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1993 2021 1.9E-6 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 3226 3255 6.3E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2541 2570 4.9E-6 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2295 2324 4.0E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1555 1585 6.3E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 199 227 5.3E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 654 683 5.9E-6 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1765 1791 0.39 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2473 2502 7.3E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1321 1349 4.8E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 562 586 1.0E-6 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2383 2412 2.2E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1923 1952 2.9E-5 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1020 1050 2.1E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2838 2866 1.8E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 3315 3345 0.18 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 912 942 9.1E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 2926 2955 2.6E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1122 1150 7.0E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 Pfam PF12951 Passenger-associated-transport-repeat 1690 1717 1.1E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 2875 3052 1.32E-10 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 1739 2121 1.54E-21 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 2358 2668 7.85E-26 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 443 629 1.0E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 2668 2889 4.71E-8 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 2183 2363 5.02E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 2121 2142 5.02E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1991 2022 2.2E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1922 1953 1.2E-5 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2472 2503 3.2E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 198 227 5.7E-7 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2541 2571 3.0E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1220 1250 4.8E-6 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1420 1452 2.3E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1320 1351 1.3E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1122 1152 1.5E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2295 2324 5.7E-11 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1554 1585 1.2E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3226 3256 3.3E-11 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1019 1051 2.3E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3315 3346 1.0E-4 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 911 942 3.8E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 562 588 3.9E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 653 683 8.6E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2838 2867 3.7E-12 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2382 2413 3.0E-11 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2925 2956 4.9E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1689 1715 2.9E-8 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SMART SM00869 3556 3820 1.1E-38 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF103515 3517 3835 1.57E-44 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 3037 3279 3.14E-7 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS19145 ee2bd88ea79f2d8b074bec7bedcc98e2 3835 SUPERFAMILY SSF51126 633 980 6.28E-10 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 Gene3D G3DSA:1.10.10.10 14 85 3.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 SUPERFAMILY SSF46785 14 84 6.45E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 7.9E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 7.9E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 SUPERFAMILY SSF48008 101 240 7.32E-29 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 80 6.0E-22 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 SMART SM00345 21 80 1.2E-22 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 Gene3D G3DSA:1.20.120.530 101 239 6.3E-28 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 Pfam PF07729 FCD domain 107 231 2.0E-27 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS24525 db8e34c23d8a5711fd5ef1438693b828 254 SMART SM00895 105 233 2.5E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 SMART SM00947 28 196 2.4E-65 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 SUPERFAMILY SSF53056 2 205 6.15E-62 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 83 103 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 Gene3D G3DSA:3.40.1050.10 2 207 2.6E-68 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 40 47 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS23795 d8e56f4690aedcf14219e2bc4f980390 234 Pfam PF00484 Carbonic anhydrase 35 192 1.8E-48 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 303 311 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Pfam PF00970 Oxidoreductase FAD-binding domain 24 111 2.9E-8 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 277 345 1.9E-12 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Pfam PF00175 Oxidoreductase NAD-binding domain 123 229 2.5E-10 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Gene3D G3DSA:3.40.50.80 103 240 7.7E-31 T 06-07-2017 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 SUPERFAMILY SSF52343 102 245 4.06E-34 T 06-07-2017 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 SUPERFAMILY SSF63380 10 111 2.33E-22 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Gene3D G3DSA:3.10.20.30 241 352 1.2E-31 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 SUPERFAMILY SSF54292 238 352 1.18E-27 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 Gene3D G3DSA:2.40.30.10 11 102 5.9E-21 T 06-07-2017 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 3.7E-9 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 122 141 3.7E-9 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 43 55 3.7E-9 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS19400 c913e442eea8a8d0795942320676f9ca 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 106 115 3.7E-9 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 Gene3D G3DSA:3.40.1010.10 2 110 7.1E-30 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 Gene3D G3DSA:3.30.950.10 111 231 9.8E-40 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 8.6E-40 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 1.0E-93 T 06-07-2017 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 CDO28_RS12515 1b55ee4c696903c3cb669c29cb586df0 252 SUPERFAMILY SSF53790 2 248 2.09E-62 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS03680 9c77f99e48b2fdbaf3092922925f3c34 172 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 4 141 2.0E-6 T 06-07-2017 CDO28_RS03680 9c77f99e48b2fdbaf3092922925f3c34 172 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 06-07-2017 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03680 9c77f99e48b2fdbaf3092922925f3c34 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 26.238 T 06-07-2017 IPR022973 Ribosomal protein L10 CDO28_RS03680 9c77f99e48b2fdbaf3092922925f3c34 172 SUPERFAMILY SSF160369 3 168 3.27E-55 T 06-07-2017 CDO28_RS03680 9c77f99e48b2fdbaf3092922925f3c34 172 Pfam PF00466 Ribosomal protein L10 3 98 5.6E-27 T 06-07-2017 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 SUPERFAMILY SSF47413 3 49 5.88E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 SUPERFAMILY SSF53822 66 339 2.75E-37 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 Gene3D G3DSA:3.40.50.2300 184 334 2.6E-26 T 06-07-2017 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 06-07-2017 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 Gene3D G3DSA:3.40.50.2300 64 183 3.0E-13 T 06-07-2017 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 Gene3D G3DSA:1.10.260.40 4 49 2.1E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 49 2.7E-13 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 SMART SM00354 4 60 1.7E-6 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS33665 b96d22c1df61b9ecc82db3fd8718a9a3 343 Pfam PF13407 Periplasmic binding protein domain 68 320 5.3E-33 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 124 4.1E-23 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 SUPERFAMILY SSF55347 133 321 1.8E-31 T 06-07-2017 CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 Gene3D G3DSA:3.40.50.720 2 146 2.5E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 Gene3D G3DSA:3.30.360.10 147 354 2.9E-32 T 06-07-2017 CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 250 9.0E-5 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS32200 654e552181e2eba2ed2365924b4e26f6 365 SUPERFAMILY SSF51735 4 157 7.49E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11730 177ebd0c3992ef0696cb90ca317747ca 213 SUPERFAMILY SSF52317 4 213 2.44E-44 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS11730 177ebd0c3992ef0696cb90ca317747ca 213 Gene3D G3DSA:3.40.50.880 5 213 4.1E-51 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS11730 177ebd0c3992ef0696cb90ca317747ca 213 Pfam PF06283 Trehalose utilisation 4 211 1.2E-40 T 06-07-2017 IPR029010 ThuA-like domain CDO28_RS14395 8566f3f08d27a7036aa025638f7e3323 217 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 207 1.1E-65 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS14395 8566f3f08d27a7036aa025638f7e3323 217 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 06-07-2017 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS14395 8566f3f08d27a7036aa025638f7e3323 217 Pfam PF01081 KDPG and KHG aldolase 10 200 4.5E-56 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS14395 8566f3f08d27a7036aa025638f7e3323 217 SUPERFAMILY SSF51569 5 208 5.49E-59 T 06-07-2017 CDO28_RS14395 8566f3f08d27a7036aa025638f7e3323 217 Gene3D G3DSA:3.20.20.70 6 213 1.3E-68 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 SUPERFAMILY SSF54292 2 75 5.24E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 SUPERFAMILY SSF47741 82 147 1.31E-23 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 Pfam PF01799 [2Fe-2S] binding domain 71 142 6.1E-21 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 Gene3D G3DSA:3.10.20.30 2 72 1.4E-30 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 61 9.0E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS24645 02a99921f99e927a1bec53d13a5d8552 148 Gene3D G3DSA:1.10.150.120 73 147 7.1E-24 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 SMART SM00895 106 228 1.5E-16 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 Gene3D G3DSA:1.10.10.10 17 80 3.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 Pfam PF07729 FCD domain 107 222 9.1E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 SMART SM00345 21 80 1.0E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 Gene3D G3DSA:1.20.120.530 102 236 5.2E-27 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 SUPERFAMILY SSF46785 12 82 1.23E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 SUPERFAMILY SSF48008 103 235 9.15E-24 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 79 1.8E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 3.3E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14630 723e25d16bddaaebf8303f5650a22993 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 3.3E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 83 4.1E-14 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 SUPERFAMILY SSF53697 103 269 4.2E-14 T 06-07-2017 CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 Pfam PF01380 SIS domain 138 261 7.2E-29 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 Gene3D G3DSA:1.10.10.10 7 84 9.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 Gene3D G3DSA:3.40.50.10490 114 266 9.7E-12 T 06-07-2017 CDO28_RS14270 ea538060b9eb1f2059a0a9f513257e65 300 SUPERFAMILY SSF46689 9 84 1.7E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF158472 222 270 7.98E-8 T 06-07-2017 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 535 647 2.1E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 588 9.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 602 9.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 646 9.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 627 9.3E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF00512 His Kinase A (phospho-acceptor) domain 420 487 5.1E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF00072 Response regulator receiver domain 788 900 5.1E-17 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF00072 Response regulator receiver domain 671 778 5.6E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF52172 785 905 2.56E-25 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Gene3D G3DSA:3.40.50.2300 668 781 4.7E-30 T 06-07-2017 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Gene3D G3DSA:3.40.50.2300 785 905 7.1E-28 T 06-07-2017 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF47384 405 490 1.84E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF00672 HAMP domain 204 268 2.3E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SMART SM00304 222 274 6.4E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Pfam PF12860 PAS fold 290 403 4.1E-18 T 06-07-2017 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF55785 271 398 6.28E-9 T 06-07-2017 IPR000014 PAS domain CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SMART SM00448 668 778 1.2E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SMART SM00448 786 900 2.9E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Gene3D G3DSA:3.30.450.20 274 399 1.8E-11 T 06-07-2017 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Gene3D G3DSA:1.10.287.130 414 473 5.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SMART SM00387 534 649 1.8E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF52172 666 781 2.7E-31 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SMART SM00388 420 488 5.2E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 SUPERFAMILY SSF55874 477 648 9.69E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS32365 2a4ee072d5924a269384f4ff061917dc 917 Gene3D G3DSA:3.30.565.10 474 648 2.8E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 147 27.883 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 Pfam PF12838 4Fe-4S dicluster domain 62 117 5.4E-12 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 Gene3D G3DSA:1.10.1060.10 19 140 7.5E-24 T 06-07-2017 CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 SUPERFAMILY SSF54862 36 147 5.86E-28 T 06-07-2017 CDO28_RS04085 16868a3f0e36d28a4e727a3d174edcac 163 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 20 141 3.9E-48 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 4 650 0.0 T 06-07-2017 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 SUPERFAMILY SSF56801 37 624 4.58E-125 T 06-07-2017 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Gene3D G3DSA:3.30.300.30 525 629 4.3E-17 T 06-07-2017 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Pfam PF13193 AMP-binding enzyme C-terminal domain 538 612 5.9E-7 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Gene3D G3DSA:3.40.50.980 92 274 2.6E-26 T 06-07-2017 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 ProSitePatterns PS00455 Putative AMP-binding domain signature. 268 279 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Gene3D G3DSA:2.30.38.10 448 520 0.001 T 06-07-2017 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Gene3D G3DSA:3.40.50.980 275 427 1.7E-12 T 06-07-2017 CDO28_RS07030 2c822d259f65e61709da9bd027012ee9 650 Pfam PF00501 AMP-binding enzyme 103 524 2.9E-45 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS18835 005261ac06d65ec1e7d11fc94fdce76d 457 Pfam PF01474 Class-II DAHP synthetase family 5 441 2.5E-201 T 06-07-2017 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDO28_RS18835 005261ac06d65ec1e7d11fc94fdce76d 457 SUPERFAMILY SSF51569 2 445 2.05E-199 T 06-07-2017 CDO28_RS18835 005261ac06d65ec1e7d11fc94fdce76d 457 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 445 1.6E-212 T 06-07-2017 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 SUPERFAMILY SSF53098 17 150 2.43E-39 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 21 149 4.5E-30 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 Gene3D G3DSA:3.30.420.140 18 152 1.2E-46 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 Pfam PF03652 Holliday junction resolvase 18 149 8.6E-40 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 23.44 T 06-07-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDO28_RS03905 900b0ede6cbb8f9887bc71536e6c74a5 165 SMART SM00732 17 117 3.8E-32 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 483 490 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 6 51 4.4E-18 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 PRINTS PR00045 Sigma-54 factor signature 403 415 6.9E-33 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 PRINTS PR00045 Sigma-54 factor signature 419 430 6.9E-33 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 PRINTS PR00045 Sigma-54 factor signature 214 231 6.9E-33 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 PRINTS PR00045 Sigma-54 factor signature 478 496 6.9E-33 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 Pfam PF04552 Sigma-54, DNA binding domain 344 503 7.1E-71 T 06-07-2017 IPR007634 RNA polymerase sigma factor 54, DNA-binding CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 PIRSF PIRSF000774 1 505 1.9E-144 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 Pfam PF04963 Sigma-54 factor, core binding domain 143 328 1.8E-49 T 06-07-2017 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 502 4.1E-128 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08635 13c63fcabe072444b85b8e16bad811f3 514 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 391 410 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS09620 754567176959c02ca49afbecb41b2efe 315 Gene3D G3DSA:1.10.3720.10 75 308 2.0E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09620 754567176959c02ca49afbecb41b2efe 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 308 7.5E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09620 754567176959c02ca49afbecb41b2efe 315 SUPERFAMILY SSF161098 61 297 2.22E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Gene3D G3DSA:3.40.50.300 13 25 2.8E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Gene3D G3DSA:3.40.50.300 97 208 2.8E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 SUPERFAMILY SSF52540 13 203 9.46E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 16 194 5.9E-72 T 06-07-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Hamap MF_00328 Guanylate kinase [gmk]. 13 197 36.853 T 06-07-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Gene3D G3DSA:3.30.63.10 61 96 5.3E-23 T 06-07-2017 CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 ProSitePatterns PS00856 Guanylate kinase-like signature. 49 66 - T 06-07-2017 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 SMART SM00072 14 197 3.4E-60 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Pfam PF00625 Guanylate kinase 17 196 2.6E-49 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDO28_RS04770 24fd09d4d8a58afbe3cea569664cee10 219 Gene3D G3DSA:3.40.50.300 26 60 3.1E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31695 382a65a7313fa4da1747f2f02d4421bc 167 Pfam PF13628 Domain of unknown function (DUF4142) 30 163 1.9E-40 T 06-07-2017 IPR025419 Domain of unknown function DUF4142 CDO28_RS31695 382a65a7313fa4da1747f2f02d4421bc 167 Gene3D G3DSA:1.20.1260.10 32 163 2.8E-8 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 Gene3D G3DSA:3.40.50.1820 263 456 1.7E-9 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 SUPERFAMILY SSF53474 42 153 1.69E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 Gene3D G3DSA:3.40.50.1820 49 159 3.3E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 PIRSF PIRSF029063 3 460 3.1E-183 T 06-07-2017 IPR011225 Type IV secretory pathway, VirJ component CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 Pfam PF06057 Bacterial virulence protein (VirJ) 265 455 3.4E-89 T 06-07-2017 IPR010333 Bacterial virulence CDO28_RS04585 07d3196116b8f695db8e37cc5ea90485 460 SUPERFAMILY SSF53474 253 452 2.81E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 Pfam PF00561 alpha/beta hydrolase fold 24 255 1.7E-22 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 Gene3D G3DSA:3.40.50.1820 3 274 4.4E-68 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 2.5E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 2.5E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 218 232 2.5E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30850 0d941c2ce6aefaed220f28800ea92298 275 SUPERFAMILY SSF53474 3 274 4.26E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS07155 85cd36e51226900b754e856a21c8502b 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 322 1.6E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07155 85cd36e51226900b754e856a21c8502b 336 SUPERFAMILY SSF161098 93 321 7.33E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07155 85cd36e51226900b754e856a21c8502b 336 SUPERFAMILY SSF160964 11 89 7.59E-6 T 06-07-2017 CDO28_RS07155 85cd36e51226900b754e856a21c8502b 336 Gene3D G3DSA:1.10.3720.10 99 331 8.8E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 Gene3D G3DSA:1.10.150.120 74 150 1.5E-28 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 SUPERFAMILY SSF54292 2 77 6.69E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 Pfam PF01799 [2Fe-2S] binding domain 72 143 7.7E-25 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 SUPERFAMILY SSF47741 72 150 6.8E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 62 9.1E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS32295 63477ba564c709803278247f7f0bfcd5 152 Gene3D G3DSA:3.10.20.30 2 73 4.4E-27 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS16090 631c2e9e6431705e50a4e232492f017b 222 SUPERFAMILY SSF53639 1 214 3.14E-66 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16090 631c2e9e6431705e50a4e232492f017b 222 SMART SM01007 8 185 2.4E-66 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16090 631c2e9e6431705e50a4e232492f017b 222 Gene3D G3DSA:3.40.225.10 3 213 4.8E-64 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16090 631c2e9e6431705e50a4e232492f017b 222 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 184 7.0E-48 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Pfam PF09334 tRNA synthetases class I (M) 7 365 4.5E-112 T 06-07-2017 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 SUPERFAMILY SSF52374 5 356 3.49E-109 T 06-07-2017 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Gene3D G3DSA:2.170.220.10 118 229 1.9E-47 T 06-07-2017 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 510 47.786 T 06-07-2017 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 SUPERFAMILY SSF47323 354 510 6.54E-40 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Pfam PF08264 Anticodon-binding domain of tRNA 387 470 5.1E-6 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Gene3D G3DSA:1.10.730.10 342 510 1.3E-54 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Gene3D G3DSA:3.40.50.620 230 339 1.8E-72 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 Gene3D G3DSA:3.40.50.620 5 115 1.8E-72 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 261 276 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 228 239 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 353 364 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 1.7E-31 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS02150 4841c51bbfdbf6ab87aa26b7d9b2af0b 516 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 493 7.6E-155 T 06-07-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 PIRSF PIRSF002741 16 498 2.4E-76 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 Gene3D G3DSA:3.10.105.10 256 464 4.2E-35 T 06-07-2017 CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 77 98 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 415 3.2E-79 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 Gene3D G3DSA:3.90.76.10 37 189 3.7E-36 T 06-07-2017 CDO28_RS31325 253089f927d22d3fe6ef8c0bab715997 501 SUPERFAMILY SSF53850 25 480 5.43E-101 T 06-07-2017 CDO28_RS05380 38bbb6d260a5f99eecd2ed0158ec8476 429 Pfam PF07690 Major Facilitator Superfamily 11 186 5.7E-9 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS05380 38bbb6d260a5f99eecd2ed0158ec8476 429 Pfam PF07690 Major Facilitator Superfamily 208 380 2.8E-12 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS05380 38bbb6d260a5f99eecd2ed0158ec8476 429 Gene3D G3DSA:1.20.1250.20 198 373 7.9E-21 T 06-07-2017 CDO28_RS05380 38bbb6d260a5f99eecd2ed0158ec8476 429 Gene3D G3DSA:1.20.1250.20 7 177 2.2E-11 T 06-07-2017 CDO28_RS05380 38bbb6d260a5f99eecd2ed0158ec8476 429 SUPERFAMILY SSF103473 7 375 9.94E-40 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 126 24.973 T 06-07-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 SUPERFAMILY SSF48300 4 62 1.96E-16 T 06-07-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 95 3.0E-12 T 06-07-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 SUPERFAMILY SSF54736 55 126 2.44E-25 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 1.7E-19 T 06-07-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 3.2E-47 T 06-07-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 Gene3D G3DSA:1.20.5.710 6 50 8.3E-18 T 06-07-2017 CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 Gene3D G3DSA:3.30.1390.10 54 126 3.3E-34 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS03675 123894a51565a90abcec9d29febbf221 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 5.5E-31 T 06-07-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 Gene3D G3DSA:3.20.20.70 14 226 1.8E-60 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 PIRSF PIRSF001357 12 238 7.2E-67 T 06-07-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 Pfam PF01791 DeoC/LacD family aldolase 78 205 9.4E-10 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 SMART SM01133 18 230 3.6E-50 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 SUPERFAMILY SSF51569 16 226 1.57E-55 T 06-07-2017 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 17 232 27.397 T 06-07-2017 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 CDO28_RS14370 a5b7331ae5994d1b88b32c6535cc03dd 248 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 19 226 3.9E-51 T 06-07-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 CDO28_RS29150 a68190b8e3c0a472c30957061d140bb5 291 Gene3D G3DSA:1.10.3720.10 18 278 2.3E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29150 a68190b8e3c0a472c30957061d140bb5 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 279 1.9E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29150 a68190b8e3c0a472c30957061d140bb5 291 SUPERFAMILY SSF161098 21 291 2.34E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Gene3D G3DSA:1.10.10.60 134 177 2.8E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Pfam PF12833 Helix-turn-helix domain 109 177 2.9E-14 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 267 345 2.7E-32 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 SMART SM00342 98 179 3.0E-9 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 SUPERFAMILY SSF53155 186 270 6.28E-15 T 06-07-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 267 346 3.5E-29 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 SUPERFAMILY SSF57884 2 83 6.41E-30 T 06-07-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Gene3D G3DSA:3.40.10.10 4 83 1.0E-28 T 06-07-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Pfam PF02805 Metal binding domain of Ada 12 73 1.2E-26 T 06-07-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 PIRSF PIRSF000409 1 353 1.3E-154 T 06-07-2017 IPR016221 Bifunctional regulatory protein Ada CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 SUPERFAMILY SSF46767 266 346 3.27E-28 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Gene3D G3DSA:1.10.10.10 265 346 2.6E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08360 aa340bd66949f3e0ab8c856170fda6c5 370 Gene3D G3DSA:1.10.10.60 84 133 2.9E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 274 283 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 157 178 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 134 146 1.4E-44 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 324 9.4E-127 T 06-07-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 317 4.2E-99 T 06-07-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 SUPERFAMILY SSF53067 105 320 1.62E-41 T 06-07-2017 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 Gene3D G3DSA:3.30.420.40 2 162 9.7E-45 T 06-07-2017 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 Pfam PF00814 Glycoprotease family 28 318 1.7E-99 T 06-07-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 343 62.793 T 06-07-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS11675 44f4939488e7d7262c427053d8d1a635 360 SUPERFAMILY SSF53067 3 127 1.29E-28 T 06-07-2017 CDO28_RS00135 8a0f700deb82ac6305a920e39f71cb82 375 Gene3D G3DSA:1.20.1250.20 5 166 7.3E-11 T 06-07-2017 CDO28_RS00135 8a0f700deb82ac6305a920e39f71cb82 375 Gene3D G3DSA:1.20.1250.20 187 373 2.6E-4 T 06-07-2017 CDO28_RS00135 8a0f700deb82ac6305a920e39f71cb82 375 Pfam PF07690 Major Facilitator Superfamily 5 246 4.5E-16 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS00135 8a0f700deb82ac6305a920e39f71cb82 375 SUPERFAMILY SSF103473 2 370 8.76E-27 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS05025 8a919a487bd56e449412cee68d79a5fc 172 Gene3D G3DSA:2.60.40.200 27 172 7.2E-39 T 06-07-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05025 8a919a487bd56e449412cee68d79a5fc 172 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 160 171 - T 06-07-2017 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05025 8a919a487bd56e449412cee68d79a5fc 172 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 36 171 1.9E-33 T 06-07-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05025 8a919a487bd56e449412cee68d79a5fc 172 SUPERFAMILY SSF49329 27 171 2.23E-36 T 06-07-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 224 318 1.8E-16 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 SMART SM01092 223 321 2.2E-26 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 SUPERFAMILY SSF55447 222 321 3.92E-26 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Gene3D G3DSA:3.30.465.10 54 110 3.1E-32 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Gene3D G3DSA:3.30.465.10 154 215 3.1E-32 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Gene3D G3DSA:3.30.390.50 222 321 6.2E-30 T 06-07-2017 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 SUPERFAMILY SSF56176 1 216 4.63E-55 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 216 1.8E-50 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS27720 0392b1c192c4b274288f367bcbaaa81a 325 Gene3D G3DSA:3.30.43.10 1 49 3.0E-16 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 SMART SM00859 4 119 2.0E-37 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 332 35.482 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 1.3E-52 T 06-07-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 SUPERFAMILY SSF51735 3 157 2.0E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 333 6.9E-142 T 06-07-2017 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 Gene3D G3DSA:3.40.50.720 2 142 1.5E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 SUPERFAMILY SSF55347 129 319 1.68E-74 T 06-07-2017 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 Gene3D G3DSA:3.30.360.10 143 314 6.9E-81 T 06-07-2017 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 118 1.5E-29 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS10775 4baa13aa6a88b8de08444335970d52e3 344 PIRSF PIRSF000148 2 337 3.0E-128 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 4.5E-30 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 SUPERFAMILY SSF51735 137 301 5.55E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 Pfam PF00107 Zinc-binding dehydrogenase 170 295 1.8E-18 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 Gene3D G3DSA:3.40.50.720 162 279 5.1E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 SUPERFAMILY SSF50129 1 169 4.09E-42 T 06-07-2017 IPR011032 GroES-like CDO28_RS10525 fcd34a8155b8b1fa6e538b95ceeafea5 338 Gene3D G3DSA:3.90.180.10 1 161 9.3E-44 T 06-07-2017 IPR011032 GroES-like CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 5 157 45.194 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 Gene3D G3DSA:3.30.420.10 6 159 1.8E-57 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 7 154 2.8E-45 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 117 151 - T 06-07-2017 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 111 130 1.6E-30 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 142 154 1.6E-30 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 65 81 1.6E-30 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 87 103 1.6E-30 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 8 21 1.6E-30 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 SUPERFAMILY SSF53098 6 159 3.98E-50 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS13365 07d416687b1f7d5ff29096c65532b648 170 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 7 159 2.6E-42 T 06-07-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDO28_RS08970 7d9d7abc773d9bcbf26a29279e78adfc 377 SUPERFAMILY SSF82171 46 248 6.67E-17 T 06-07-2017 CDO28_RS08970 7d9d7abc773d9bcbf26a29279e78adfc 377 Gene3D G3DSA:2.130.10.10 67 248 5.3E-11 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS08970 7d9d7abc773d9bcbf26a29279e78adfc 377 PIRSF PIRSF028101 1 360 9.1E-164 T 06-07-2017 IPR008311 Uncharacterised conserved protein UCP028101 CDO28_RS08970 7d9d7abc773d9bcbf26a29279e78adfc 377 Pfam PF07433 Protein of unknown function (DUF1513) 67 358 6.5E-111 T 06-07-2017 IPR008311 Uncharacterised conserved protein UCP028101 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 SUPERFAMILY SSF55021 334 414 3.84E-13 T 06-07-2017 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 310 7.6E-65 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 40 53 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 Gene3D G3DSA:3.40.50.1100 49 148 1.3E-27 T 06-07-2017 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 Gene3D G3DSA:3.40.1020.10 217 414 4.2E-45 T 06-07-2017 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 SUPERFAMILY SSF53686 3 356 7.07E-84 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 323 414 2.5E-19 T 06-07-2017 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDO28_RS01695 6eb578fdc2a66d1b16392e51ba15f4ff 415 TIGRFAM TIGR02079 THD1: threonine dehydratase 3 415 1.1E-174 T 06-07-2017 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 380 474 1.1E-16 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 68 79 - T 06-07-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 Gene3D G3DSA:3.20.20.70 58 320 6.8E-35 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 Pfam PF04055 Radical SAM superfamily 68 246 2.2E-26 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 SUPERFAMILY SSF102114 56 265 2.09E-30 T 06-07-2017 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 43 476 5.5E-206 T 06-07-2017 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 SUPERFAMILY SSF53146 368 481 5.62E-26 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS22950 eddebb8b30850e23b07e7c182d367f56 490 Gene3D G3DSA:3.30.420.130 369 483 9.8E-29 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 Pfam PF00919 Uncharacterized protein family UPF0004 23 126 4.3E-30 T 06-07-2017 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 Gene3D G3DSA:3.80.30.20 173 400 3.5E-77 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 SUPERFAMILY SSF102114 160 398 9.42E-62 T 06-07-2017 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 23 461 7.0E-147 T 06-07-2017 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 SMART SM00729 173 393 3.6E-61 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 177 197 - T 06-07-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 23 465 2.5E-150 T 06-07-2017 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 Pfam PF04055 Radical SAM superfamily 178 351 4.8E-32 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 Pfam PF01938 TRAM domain 405 464 2.8E-10 T 06-07-2017 IPR002792 TRAM domain CDO28_RS08515 94d5679215b97c907c70ca3c44a7b9b0 472 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 22 466 72.757 T 06-07-2017 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 CDO28_RS16995 0977f09e27f1a8ff44361ebf19c32295 349 Gene3D G3DSA:3.20.20.100 1 317 1.2E-94 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS16995 0977f09e27f1a8ff44361ebf19c32295 349 SUPERFAMILY SSF51430 1 320 4.71E-99 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS16995 0977f09e27f1a8ff44361ebf19c32295 349 Pfam PF00248 Aldo/keto reductase family 16 317 1.2E-68 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS05515 d7b6e98db1e9cd1547f20482c9a1180e 111 Pfam PF07372 Protein of unknown function (DUF1491) 3 108 3.4E-26 T 06-07-2017 IPR009964 Protein of unknown function DUF1491 CDO28_RS20700 6987a93aab3542ea2e836b19a0b6b26b 228 SUPERFAMILY SSF81342 19 225 4.97E-50 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CDO28_RS20700 6987a93aab3542ea2e836b19a0b6b26b 228 Gene3D G3DSA:1.20.950.20 20 223 2.1E-61 T 06-07-2017 CDO28_RS20700 6987a93aab3542ea2e836b19a0b6b26b 228 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 22 219 1.7E-52 T 06-07-2017 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 CDO28_RS20700 6987a93aab3542ea2e836b19a0b6b26b 228 Pfam PF01292 Prokaryotic cytochrome b561 23 200 1.6E-26 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SMART SM00862 24 99 9.5E-16 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 Gene3D G3DSA:3.40.50.10070 121 243 9.6E-5 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 99 8.3E-15 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 Gene3D G3DSA:1.10.10.10 4 100 2.5E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SUPERFAMILY SSF48452 323 475 3.03E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SUPERFAMILY SSF46894 2 101 9.92E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 Gene3D G3DSA:1.25.40.10 277 470 6.9E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SMART SM00028 372 405 47.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SMART SM00028 338 371 51.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SMART SM00028 407 440 40.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS02190 a9f6adac09f041899632b0922e3944f9 502 SUPERFAMILY SSF52964 119 243 7.59E-5 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 125 137 3.5E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 3.5E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 255 273 3.5E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 3.5E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.1E-10 T 06-07-2017 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.1E-10 T 06-07-2017 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 245 267 1.1E-10 T 06-07-2017 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 Gene3D G3DSA:3.50.50.60 5 127 2.4E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 Gene3D G3DSA:3.50.50.60 244 293 2.4E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 SUPERFAMILY SSF51905 5 292 4.54E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 Gene3D G3DSA:3.50.50.60 128 222 2.6E-18 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19360 f698b3b573b85704acd73341a60e7e30 303 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 279 8.9E-14 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS01255 a0f59a48d07c3729918b5e683db9701f 249 Pfam PF07505 Protein of unknown function (DUF5131) 4 232 2.7E-58 T 06-07-2017 IPR011101 Protein of unknown function DUF5131 CDO28_RS14305 42a4a8c262202af4175e7a1b43739f8f 287 SUPERFAMILY SSF161098 82 267 4.71E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14305 42a4a8c262202af4175e7a1b43739f8f 287 Gene3D G3DSA:1.10.3720.10 81 276 7.7E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14305 42a4a8c262202af4175e7a1b43739f8f 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 268 6.7E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21245 3632f239e58c2cf2214e2312745758b2 176 SUPERFAMILY SSF55961 7 162 1.78E-38 T 06-07-2017 CDO28_RS21245 3632f239e58c2cf2214e2312745758b2 176 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 18 148 5.6E-18 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS21245 3632f239e58c2cf2214e2312745758b2 176 Gene3D G3DSA:3.30.530.20 11 170 1.6E-35 T 06-07-2017 IPR023393 START-like domain CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 SUPERFAMILY SSF52317 8 195 9.92E-36 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 Gene3D G3DSA:1.10.10.60 212 266 1.7E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 Pfam PF01965 DJ-1/PfpI family 48 171 7.7E-9 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 Gene3D G3DSA:3.40.50.880 8 200 5.3E-33 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 SMART SM00342 230 313 1.3E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 SUPERFAMILY SSF46689 266 316 5.38E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 SUPERFAMILY SSF46689 214 264 4.12E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 Pfam PF12833 Helix-turn-helix domain 236 315 1.1E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 313 8.6E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 297 8.6E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS24610 b79ec3731551f87d34b3260152c3c1e6 330 Gene3D G3DSA:1.10.10.60 267 315 5.7E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PIRSF PIRSF005419 1 695 1.8E-214 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 17 694 9.5E-267 T 06-07-2017 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 Pfam PF00771 FHIPEP family 28 685 6.4E-235 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS07205 cb2848fb2eeaa83940f32a5c7988b786 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 6.5E-52 T 06-07-2017 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 SUPERFAMILY SSF53335 119 427 3.72E-63 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 300 311 - T 06-07-2017 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 229 423 7.0E-43 T 06-07-2017 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 Gene3D G3DSA:3.40.50.150 217 427 2.0E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 Gene3D G3DSA:3.30.70.1170 155 215 1.5E-11 T 06-07-2017 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 351 367 2.8E-27 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 207 221 2.8E-27 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 301 313 2.8E-27 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 236 246 2.8E-27 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08945 12fde6eb498d9ef6ff57af268c4962c1 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 410 427 2.8E-27 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 Gene3D G3DSA:3.40.30.10 2 96 8.4E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 Pfam PF14497 Glutathione S-transferase, C-terminal domain 143 209 3.3E-7 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 SUPERFAMILY SSF52833 1 102 7.92E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 75 5.5E-13 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 SUPERFAMILY SSF47616 81 227 5.85E-26 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS08925 d07c42692fdeb9634e4e1bbc59e68f45 230 Gene3D G3DSA:1.20.1050.10 97 226 2.3E-37 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS24195 5c47cfccbd92882293f97f346db43ff1 137 Gene3D G3DSA:2.60.120.10 17 127 7.3E-27 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS24195 5c47cfccbd92882293f97f346db43ff1 137 SUPERFAMILY SSF51182 18 121 5.47E-25 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS24195 5c47cfccbd92882293f97f346db43ff1 137 Pfam PF07883 Cupin domain 41 115 9.8E-18 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 SUPERFAMILY SSF46689 250 299 4.39E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 Gene3D G3DSA:1.10.10.60 252 299 2.8E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 SMART SM00342 213 296 4.0E-31 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 SUPERFAMILY SSF46689 200 248 1.97E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 296 1.1E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 265 280 1.1E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 Pfam PF12833 Helix-turn-helix domain 219 297 1.4E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 Gene3D G3DSA:1.10.10.60 200 251 2.9E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25580 1a0189b4455abc65f1e12d507be9824b 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 250 292 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS34135 20259934b78fd7f05f9cc7a3bb4010c5 385 SUPERFAMILY SSF55073 226 380 2.59E-44 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS34135 20259934b78fd7f05f9cc7a3bb4010c5 385 Gene3D G3DSA:3.30.70.270 223 381 4.5E-49 T 06-07-2017 CDO28_RS34135 20259934b78fd7f05f9cc7a3bb4010c5 385 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 375 1.4E-39 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS34135 20259934b78fd7f05f9cc7a3bb4010c5 385 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 378 1.0E-43 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS34135 20259934b78fd7f05f9cc7a3bb4010c5 385 SMART SM00267 210 379 1.0E-51 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 Gene3D G3DSA:1.20.1050.10 87 202 9.5E-50 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 Gene3D G3DSA:3.40.30.10 2 86 5.4E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 SUPERFAMILY SSF47616 80 206 1.25E-38 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 SUPERFAMILY SSF52833 3 86 6.28E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 198 2.3E-8 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS05285 ac0cd4be2fa772ed98612233f7e4c223 233 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 83 7.0E-14 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS08050 8775c91dd70a3563c207c614558cd628 336 SUPERFAMILY SSF51412 10 304 4.03E-55 T 06-07-2017 CDO28_RS08050 8775c91dd70a3563c207c614558cd628 336 Pfam PF03060 Nitronate monooxygenase 90 307 1.1E-18 T 06-07-2017 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 CDO28_RS08050 8775c91dd70a3563c207c614558cd628 336 Gene3D G3DSA:3.20.20.70 11 303 1.4E-43 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS30735 e7294f3971f8a01644315cd317a759ce 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 41 1.0E-12 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS30735 e7294f3971f8a01644315cd317a759ce 82 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 40 7.9E-10 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS30735 e7294f3971f8a01644315cd317a759ce 82 Gene3D G3DSA:3.40.1620.10 1 41 3.5E-13 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS30735 e7294f3971f8a01644315cd317a759ce 82 SUPERFAMILY SSF143120 1 43 1.96E-11 T 06-07-2017 CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 Gene3D G3DSA:3.40.50.2300 1 124 1.1E-22 T 06-07-2017 CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 SUPERFAMILY SSF46894 144 193 3.4E-8 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 Gene3D G3DSA:1.10.10.10 147 193 3.0E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 SUPERFAMILY SSF52172 1 123 8.4E-19 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 Pfam PF00072 Response regulator receiver domain 3 119 3.3E-15 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21290 eb67c51018159941118ef7a2e4c2c539 240 SMART SM00448 1 119 3.5E-6 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 Gene3D G3DSA:3.10.105.10 285 501 1.3E-52 T 06-07-2017 CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 77 99 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 PIRSF PIRSF002741 3 533 2.2E-136 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 444 1.7E-102 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 Gene3D G3DSA:3.90.76.10 38 209 7.2E-52 T 06-07-2017 CDO28_RS17610 612d7d7b563f864a3a05ad2e7d496273 538 SUPERFAMILY SSF53850 26 514 8.87E-133 T 06-07-2017 CDO28_RS14400 3039c7ec0571c20a5aa6f8a682f08505 214 Hamap MF_01410 Glucose-6-phosphate isomerase [pgiA]. 3 191 53.371 T 06-07-2017 IPR016758 Glucose-6-phosphate isomerase, archaea/bacteria GO:0004347|GO:0005506 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS14400 3039c7ec0571c20a5aa6f8a682f08505 214 Gene3D G3DSA:2.60.120.10 20 194 8.5E-42 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS14400 3039c7ec0571c20a5aa6f8a682f08505 214 SUPERFAMILY SSF51182 9 194 2.97E-36 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS14400 3039c7ec0571c20a5aa6f8a682f08505 214 PIRSF PIRSF019325 1 211 5.7E-93 T 06-07-2017 IPR016758 Glucose-6-phosphate isomerase, archaea/bacteria GO:0004347|GO:0005506 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS14400 3039c7ec0571c20a5aa6f8a682f08505 214 Pfam PF06560 Glucose-6-phosphate isomerase (GPI) 27 194 1.1E-76 T 06-07-2017 IPR010551 Glucose-6-phosphate isomerase, prokaryote GO:0004347|GO:0005737|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 56 6.9E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 64 87 6.9E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 43 89 4.7E-17 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 Gene3D G3DSA:1.10.357.10 23 230 1.7E-60 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 ProSitePatterns PS01081 TetR-type HTH domain signature. 55 85 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 SUPERFAMILY SSF46689 36 114 1.1E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS12605 ab2b9d9d896dd723ccc88c5594293b62 236 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 175 229 5.5E-17 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 6 674 0.0 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Pfam PF00702 haloacid dehalogenase-like hydrolase 301 528 3.1E-32 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF81653 115 207 4.58E-21 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Gene3D G3DSA:2.70.150.10 55 208 4.2E-23 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 307 313 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Gene3D G3DSA:3.40.50.1000 441 561 2.9E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Pfam PF00122 E1-E2 ATPase 73 296 5.4E-39 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 ProSitePatterns PS01229 Hypothetical cof family signature 2. 514 536 - T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF81660 316 449 2.42E-30 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF56784 293 317 3.87E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF56784 384 402 3.87E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF56784 433 557 3.87E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 73 345 9.4E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 371 600 6.7E-46 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 305 319 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 533 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 461 471 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 439 450 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 549 1.4E-24 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Gene3D G3DSA:3.40.1110.10 316 440 1.1E-42 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 10 678 40.5 T 06-07-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF81665 44 104 9.42E-11 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF81665 617 664 9.42E-11 T 06-07-2017 CDO28_RS20450 cbd194cb4dfbe884007d64913b4ab26d 680 SUPERFAMILY SSF81665 208 299 9.42E-11 T 06-07-2017 CDO28_RS16310 3affc433a08371007ab64dcae65f554c 333 Pfam PF01464 Transglycosylase SLT domain 225 324 2.5E-13 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS16310 3affc433a08371007ab64dcae65f554c 333 Gene3D G3DSA:1.10.530.10 220 319 3.5E-19 T 06-07-2017 CDO28_RS16310 3affc433a08371007ab64dcae65f554c 333 SUPERFAMILY SSF53955 216 321 9.85E-24 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 Gene3D G3DSA:3.40.50.720 113 284 1.0E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 SUPERFAMILY SSF52283 14 138 4.68E-22 T 06-07-2017 CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 283 7.1E-51 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 Gene3D G3DSA:3.40.50.720 4 112 3.7E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 SUPERFAMILY SSF51735 103 284 4.46E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14385 2e5ee2263a00742ede51d7c1e340b552 310 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 309 9.7E-19 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS07500 efb92a8dbc2cb05a85c8e60120fc40bf 329 SUPERFAMILY SSF53822 26 325 3.81E-73 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS07500 efb92a8dbc2cb05a85c8e60120fc40bf 329 Gene3D G3DSA:3.40.50.2300 21 147 1.0E-34 T 06-07-2017 CDO28_RS07500 efb92a8dbc2cb05a85c8e60120fc40bf 329 TIGRFAM TIGR02637 RhaS: rhamnose ABC transporter, rhamnose-binding protein 29 327 6.5E-144 T 06-07-2017 IPR013459 Rhamnose-binding protein GO:0015762 CDO28_RS07500 efb92a8dbc2cb05a85c8e60120fc40bf 329 Gene3D G3DSA:3.40.50.2300 148 280 9.5E-33 T 06-07-2017 CDO28_RS07500 efb92a8dbc2cb05a85c8e60120fc40bf 329 Pfam PF13407 Periplasmic binding protein domain 29 285 3.1E-59 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 Gene3D G3DSA:1.20.58.220 120 225 3.3E-32 T 06-07-2017 CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 218 1.2E-72 T 06-07-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 Pfam PF01895 PhoU domain 125 209 1.0E-18 T 06-07-2017 IPR026022 PhoU domain CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 Pfam PF01895 PhoU domain 21 109 1.9E-21 T 06-07-2017 IPR026022 PhoU domain CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 PIRSF PIRSF003107 3 223 2.4E-62 T 06-07-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 SUPERFAMILY SSF109755 8 229 3.35E-70 T 06-07-2017 CDO28_RS08010 2ae22292927212f74d42fbb6a126cc0d 237 Gene3D G3DSA:1.20.58.220 4 112 5.7E-31 T 06-07-2017 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 365 48.105 T 06-07-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 06-07-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 361 1.1E-130 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 Gene3D G3DSA:3.40.718.10 5 365 8.6E-117 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 SMART SM01329 5 361 7.1E-172 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 361 6.0E-134 T 06-07-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CDO28_RS10805 aa6f042698395060de6bddac2d62c625 370 SUPERFAMILY SSF53659 5 366 2.52E-108 T 06-07-2017 CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 49.482 T 06-07-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 Pfam PF00117 Glutamine amidotransferase class-I 301 534 2.3E-53 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 Gene3D G3DSA:3.40.50.880 288 539 4.0E-96 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 Gene3D G3DSA:3.40.50.300 1 284 1.2E-125 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 1.1E-226 T 06-07-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 SUPERFAMILY SSF52540 1 266 7.31E-117 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 SUPERFAMILY SSF52317 289 538 2.29E-79 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS03185 5320dd6f8d03316f3d1d0c94b7815b58 542 Pfam PF06418 CTP synthase N-terminus 3 263 5.5E-119 T 06-07-2017 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 8.9E-16 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 54 3.9E-22 T 06-07-2017 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 4.0E-19 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 4.0E-19 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 4.0E-19 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 SUPERFAMILY SSF54909 69 150 9.79E-16 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 SUPERFAMILY SSF46785 6 67 1.52E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 Gene3D G3DSA:3.30.70.920 60 154 2.4E-23 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 SMART SM00344 7 116 8.0E-43 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS02340 5c518c649f346dc7273df15a84104570 156 Gene3D G3DSA:1.10.10.10 8 59 1.9E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 Gene3D G3DSA:3.40.190.10 115 224 2.4E-16 T 06-07-2017 CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 SMART SM00079 37 264 1.1E-5 T 06-07-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 263 1.2E-56 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 SUPERFAMILY SSF53850 12 263 4.66E-63 T 06-07-2017 CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 SMART SM00062 37 264 1.6E-53 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 Gene3D G3DSA:3.40.190.10 35 114 3.2E-40 T 06-07-2017 CDO28_RS11100 480f69c28aad75289cdecc6365d47ddb 269 Gene3D G3DSA:3.40.190.10 225 262 3.2E-40 T 06-07-2017 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 Gene3D G3DSA:3.90.400.10 117 187 1.9E-30 T 06-07-2017 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 SMART SM00642 25 417 9.8E-136 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 SUPERFAMILY SSF51011 478 550 1.05E-9 T 06-07-2017 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 SUPERFAMILY SSF51445 13 475 4.53E-137 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 Gene3D G3DSA:3.20.20.80 188 478 8.0E-107 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 Gene3D G3DSA:3.20.20.80 13 116 8.0E-107 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 Pfam PF00128 Alpha amylase, catalytic domain 40 390 5.4E-89 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS07145 556a3cd8d34e5304302125860e1618f3 551 Gene3D G3DSA:2.60.40.1180 479 549 7.3E-8 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS29165 2adba49cf240d3d99294fef2c3196808 420 Gene3D G3DSA:3.40.190.10 26 151 6.1E-19 T 06-07-2017 CDO28_RS29165 2adba49cf240d3d99294fef2c3196808 420 Gene3D G3DSA:3.40.190.10 152 349 9.4E-59 T 06-07-2017 CDO28_RS29165 2adba49cf240d3d99294fef2c3196808 420 Pfam PF13416 Bacterial extracellular solute-binding protein 41 352 1.0E-35 T 06-07-2017 CDO28_RS29165 2adba49cf240d3d99294fef2c3196808 420 SUPERFAMILY SSF53850 26 416 1.35E-74 T 06-07-2017 CDO28_RS27345 4aac30af65cd17f30515c05407539493 112 PIRSF PIRSF029883 2 112 3.6E-31 T 06-07-2017 IPR025499 Pectin degradation protein KdgF CDO28_RS27345 4aac30af65cd17f30515c05407539493 112 Gene3D G3DSA:2.60.120.10 3 111 7.1E-31 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS27345 4aac30af65cd17f30515c05407539493 112 Pfam PF07883 Cupin domain 38 94 1.6E-13 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS27345 4aac30af65cd17f30515c05407539493 112 SUPERFAMILY SSF51182 5 108 1.17E-22 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 142 2.3E-15 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 1.1E-19 T 06-07-2017 CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 SMART SM00344 3 112 1.5E-44 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 SUPERFAMILY SSF46785 2 62 3.29E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 Gene3D G3DSA:1.10.10.10 1 54 7.7E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 SUPERFAMILY SSF54909 65 144 3.35E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 Gene3D G3DSA:3.30.70.920 57 129 2.2E-20 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 3.4E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 3.4E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS25700 46483fcd80467189baee2b956e43c1c3 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 3.4E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 290 310 - T 06-07-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 Gene3D G3DSA:3.20.20.70 6 350 1.1E-129 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 7 348 6.5E-118 T 06-07-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 Pfam PF01180 Dihydroorotate dehydrogenase 45 336 2.4E-91 T 06-07-2017 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 06-07-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 SUPERFAMILY SSF51395 8 352 4.58E-106 T 06-07-2017 CDO28_RS07830 198f5edce6987a678bf705a50dc72aba 362 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 5 334 42.698 T 06-07-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 Pfam PF00285 Citrate synthase, C-terminal domain 46 412 1.9E-133 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 SUPERFAMILY SSF48256 4 429 1.05E-168 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PIRSF PIRSF001369 37 429 8.8E-168 T 06-07-2017 IPR024176 Citrate synthase, bacterial-type CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 Gene3D G3DSA:1.10.580.10 52 280 2.5E-99 T 06-07-2017 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 241 269 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 380 394 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 296 316 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 165 178 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 360 376 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 PRINTS PR00143 Citrate synthase signature 219 234 3.7E-56 T 06-07-2017 IPR002020 Citrate synthase GO:0046912 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 06-07-2017 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 Gene3D G3DSA:1.10.230.10 281 374 7.1E-42 T 06-07-2017 IPR016143 Citrate synthase-like, small alpha subdomain Reactome: R-HSA-163765|Reactome: R-HSA-75105 CDO28_RS02820 e4c52b6bdeecdf8b84ebc9d069327d64 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 423 2.1E-241 T 06-07-2017 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 SUPERFAMILY SSF54292 252 338 3.79E-21 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 Gene3D G3DSA:3.10.20.30 253 337 2.7E-18 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 SMART SM00044 317 533 5.6E-11 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 266 331 5.2E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 Gene3D G3DSA:3.30.70.1230 360 545 7.5E-34 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 SUPERFAMILY SSF55073 358 543 3.14E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 SUPERFAMILY SSF81343 8 188 1.24E-14 T 06-07-2017 CDO28_RS14955 67d4648a34322ffd9eb674bf21bbf762 557 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 361 543 7.1E-25 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.5E-23 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 Gene3D G3DSA:3.40.190.10 187 263 4.9E-4 T 06-07-2017 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 Pfam PF03466 LysR substrate binding domain 90 292 2.1E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 SUPERFAMILY SSF53850 88 296 7.06E-42 T 06-07-2017 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.3E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.3E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.3E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 SUPERFAMILY SSF46785 3 88 3.91E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 Gene3D G3DSA:3.40.190.10 93 186 4.5E-24 T 06-07-2017 CDO28_RS02350 d00da2a1b8e36f2b95aed8ed2f8d8940 298 Gene3D G3DSA:1.10.10.10 2 84 7.5E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22580 31b1345cd99ad0eb1735ef3bd6c54960 539 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 71 501 6.2E-115 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22580 31b1345cd99ad0eb1735ef3bd6c54960 539 SUPERFAMILY SSF81442 70 526 2.62E-120 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22580 31b1345cd99ad0eb1735ef3bd6c54960 539 Gene3D G3DSA:1.20.210.10 71 521 5.1E-67 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22580 31b1345cd99ad0eb1735ef3bd6c54960 539 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 65 525 3.7E-238 T 06-07-2017 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS22580 31b1345cd99ad0eb1735ef3bd6c54960 539 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 262 317 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22765 31b1345cd99ad0eb1735ef3bd6c54960 539 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 71 501 6.2E-115 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22765 31b1345cd99ad0eb1735ef3bd6c54960 539 SUPERFAMILY SSF81442 70 526 2.62E-120 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22765 31b1345cd99ad0eb1735ef3bd6c54960 539 Gene3D G3DSA:1.20.210.10 71 521 5.1E-67 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22765 31b1345cd99ad0eb1735ef3bd6c54960 539 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 65 525 3.7E-238 T 06-07-2017 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS22765 31b1345cd99ad0eb1735ef3bd6c54960 539 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 262 317 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 SUPERFAMILY SSF52540 75 362 5.34E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 Pfam PF00271 Helicase conserved C-terminal domain 235 341 7.6E-29 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 SMART SM00487 21 223 1.2E-62 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 Gene3D G3DSA:3.40.50.300 2 213 1.9E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 Pfam PF00270 DEAD/DEAH box helicase 26 194 3.2E-50 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 Gene3D G3DSA:3.40.50.300 214 370 4.5E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28650 2d950f9348ec8b1ccafe3d0d42601765 504 SMART SM00490 260 341 2.3E-34 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 Pfam PF01479 S4 domain 47 83 1.2E-7 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 SUPERFAMILY SSF55174 43 112 2.55E-11 T 06-07-2017 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 Gene3D G3DSA:3.10.290.10 45 109 3.9E-16 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 SUPERFAMILY SSF55120 105 272 1.09E-35 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 SMART SM00363 47 104 4.0E-6 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 145 159 - T 06-07-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 112 269 1.8E-34 T 06-07-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDO28_RS06585 b5016eae2c5589c15c1dd8190ab9fdc4 573 Pfam PF00849 RNA pseudouridylate synthase 108 184 4.4E-7 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS19310 a114ea5a0985b0cb9f093d3db07da30c 73 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 21 73 2.8E-12 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS19310 a114ea5a0985b0cb9f093d3db07da30c 73 SUPERFAMILY SSF55073 15 73 3.45E-13 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS19310 a114ea5a0985b0cb9f093d3db07da30c 73 Gene3D G3DSA:3.30.70.1230 16 73 1.9E-14 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 SUPERFAMILY SSF51556 59 389 1.91E-73 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 Gene3D G3DSA:2.30.40.10 4 68 1.1E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 Gene3D G3DSA:3.20.20.140 69 404 4.3E-81 T 06-07-2017 CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 Pfam PF01979 Amidohydrolase family 56 437 2.2E-52 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 SUPERFAMILY SSF51338 3 59 3.09E-30 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS19895 28285cb7c929be01f5c4b1f262f2ed24 508 SUPERFAMILY SSF51338 388 459 3.09E-30 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 Gene3D G3DSA:3.40.190.10 180 263 4.6E-21 T 06-07-2017 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 Pfam PF03466 LysR substrate binding domain 95 293 2.3E-35 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.3E-14 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 SUPERFAMILY SSF46785 1 87 9.98E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 SUPERFAMILY SSF53850 94 295 4.34E-35 T 06-07-2017 CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 Gene3D G3DSA:1.10.10.10 1 87 3.8E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14465 7a2a2ee7fe7b6fcad2eb6d02cae86ace 301 Gene3D G3DSA:3.40.190.10 95 179 1.8E-13 T 06-07-2017 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 SUPERFAMILY SSF46689 9 83 3.59E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 SUPERFAMILY SSF48498 89 202 3.71E-18 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 Gene3D G3DSA:1.10.10.60 9 72 2.8E-20 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 64 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 2.3E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 Gene3D G3DSA:1.10.357.10 80 203 2.3E-19 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 3.7E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24090 d75af0ba602f17493a7218ece92f0e6e 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 3.7E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 SUPERFAMILY SSF111369 181 329 3.79E-10 T 06-07-2017 CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 321 3.3E-20 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 Gene3D G3DSA:2.40.50.100 206 237 5.2E-15 T 06-07-2017 CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 Gene3D G3DSA:2.40.50.100 46 79 5.2E-15 T 06-07-2017 CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 2 330 50.728 T 06-07-2017 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG CDO28_RS27100 bf1ab9d8eb37913975410607e50c0028 334 SUPERFAMILY SSF111369 44 105 1.44E-7 T 06-07-2017 CDO28_RS09625 1c131683f1fa4159a75566627d9491aa 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 273 2.2E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09625 1c131683f1fa4159a75566627d9491aa 279 Gene3D G3DSA:1.10.3720.10 5 267 6.9E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09625 1c131683f1fa4159a75566627d9491aa 279 SUPERFAMILY SSF161098 8 279 6.54E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06835 7d0a7ad0163a0d4bce1aef047be612cc 480 TIGRFAM TIGR00937 2A51: chromate efflux transporter 42 415 4.2E-65 T 06-07-2017 IPR014047 Chromate transporter, long chain CDO28_RS06835 7d0a7ad0163a0d4bce1aef047be612cc 480 Pfam PF02417 Chromate transporter 276 470 7.4E-35 T 06-07-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 CDO28_RS06835 7d0a7ad0163a0d4bce1aef047be612cc 480 Pfam PF02417 Chromate transporter 38 198 5.5E-29 T 06-07-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 CDO28_RS06835 7d0a7ad0163a0d4bce1aef047be612cc 480 PIRSF PIRSF004810 13 477 7.6E-139 T 06-07-2017 IPR014047 Chromate transporter, long chain CDO28_RS09165 1bb622f7e442733f6cbf62690c4d70e1 413 PIRSF PIRSF003085 2 403 1.5E-148 T 06-07-2017 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 CDO28_RS09165 1bb622f7e442733f6cbf62690c4d70e1 413 SUPERFAMILY SSF53335 123 383 3.5E-76 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS09165 1bb622f7e442733f6cbf62690c4d70e1 413 Gene3D G3DSA:3.40.50.150 114 381 1.4E-91 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS09165 1bb622f7e442733f6cbf62690c4d70e1 413 Pfam PF02353 Mycolic acid cyclopropane synthetase 116 378 9.1E-96 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Pfam PF00005 ABC transporter 321 470 2.6E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Pfam PF00005 ABC transporter 26 185 7.2E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 SUPERFAMILY SSF52540 293 542 9.61E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 SUPERFAMILY SSF52540 5 257 1.52E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Gene3D G3DSA:3.40.50.300 292 544 6.5E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Gene3D G3DSA:3.40.50.300 5 259 5.0E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 522 554 9.2E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 269 4.7E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 SMART SM00382 329 536 3.0E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17620 e506cdc9782cf0760b9739e415a7b388 593 SMART SM00382 34 235 8.3E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26765 2c54d8d57e45a9510a74b003a0673f0f 334 SMART SM01133 67 315 3.3E-70 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS26765 2c54d8d57e45a9510a74b003a0673f0f 334 SUPERFAMILY SSF51569 61 317 1.47E-71 T 06-07-2017 CDO28_RS26765 2c54d8d57e45a9510a74b003a0673f0f 334 Pfam PF01791 DeoC/LacD family aldolase 70 281 1.1E-20 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS26765 2c54d8d57e45a9510a74b003a0673f0f 334 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 69 292 5.3E-42 T 06-07-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 CDO28_RS26765 2c54d8d57e45a9510a74b003a0673f0f 334 Gene3D G3DSA:3.20.20.70 60 325 9.7E-82 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 SUPERFAMILY SSF51621 13 269 5.13E-97 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 PIRSF PIRSF000388 1 272 8.7E-103 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 16 270 3.4E-94 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 14 264 1.8E-102 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 40.286 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS16470 d9811353ae40a22490f145faf0b7a07f 273 Gene3D G3DSA:3.20.20.60 9 270 5.1E-106 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS17285 7d04f4da871f7fe674e2d7220ac1768d 112 Pfam PF07439 Protein of unknown function (DUF1515) 1 112 6.0E-56 T 06-07-2017 IPR010889 Protein of unknown function DUF1515 CDO28_RS17285 7d04f4da871f7fe674e2d7220ac1768d 112 PIRSF PIRSF033399 1 112 2.9E-57 T 06-07-2017 IPR010889 Protein of unknown function DUF1515 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Gene3D G3DSA:3.30.470.30 84 193 6.0E-28 T 06-07-2017 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Pfam PF01068 ATP dependent DNA ligase domain 73 242 7.6E-28 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 SUPERFAMILY SSF56091 65 242 2.45E-45 T 06-07-2017 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Gene3D G3DSA:2.40.50.140 245 355 5.6E-24 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 65 355 1.9E-82 T 06-07-2017 IPR014146 DNA ligase D, ligase domain CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 SUPERFAMILY SSF50249 251 350 1.31E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 70 628 2.3E-142 T 06-07-2017 IPR014143 DNA ligase D CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Pfam PF04679 ATP dependent DNA ligase C terminal region 263 350 1.9E-15 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Gene3D G3DSA:3.30.1490.70 54 83 2.0E-17 T 06-07-2017 CDO28_RS26000 df2d32e98e1c7a9b67bf4d89f40d14ad 636 Gene3D G3DSA:3.30.1490.70 200 243 2.0E-17 T 06-07-2017 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 SMART SM00421 185 242 1.2E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 Gene3D G3DSA:1.10.10.10 186 245 2.9E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 218 1.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 218 230 1.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 202 1.6E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 Pfam PF00196 Bacterial regulatory proteins, luxR family 187 239 1.7E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 ProSitePatterns PS00622 LuxR-type HTH domain signature. 202 229 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS12385 3773f0ffeab99a43b24832450fb75a48 262 SUPERFAMILY SSF46894 184 245 5.78E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS13155 2f7588f195cae79ee1a825147351766b 101 Gene3D G3DSA:1.10.3340.10 2 87 3.8E-42 T 06-07-2017 IPR023163 SMc04008-like domain CDO28_RS13155 2f7588f195cae79ee1a825147351766b 101 Pfam PF06844 Protein of unknown function (DUF1244) 30 95 4.9E-37 T 06-07-2017 IPR023163 SMc04008-like domain CDO28_RS13155 2f7588f195cae79ee1a825147351766b 101 SUPERFAMILY SSF158757 3 79 8.24E-38 T 06-07-2017 IPR023163 SMc04008-like domain CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 83 6.5E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 Gene3D G3DSA:3.40.640.10 149 367 4.4E-61 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 Gene3D G3DSA:3.90.1150.10 368 463 7.6E-15 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 SUPERFAMILY SSF46785 17 86 9.08E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 SUPERFAMILY SSF53383 97 472 1.06E-87 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 Pfam PF00155 Aminotransferase class I and II 142 463 1.3E-36 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 SMART SM00345 24 83 5.0E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30790 b4041cd5888bb9cb22e0719953e70b81 474 Gene3D G3DSA:1.10.10.10 16 84 9.9E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06115 e24c911d80b3d2ea18670f2209e4aab0 471 PIRSF PIRSF004919 10 470 1.0E-136 T 06-07-2017 IPR025502 TldD CDO28_RS06115 e24c911d80b3d2ea18670f2209e4aab0 471 Pfam PF01523 Putative modulator of DNA gyrase 31 321 9.0E-58 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 CDO28_RS06115 e24c911d80b3d2ea18670f2209e4aab0 471 SUPERFAMILY SSF111283 23 469 2.88E-128 T 06-07-2017 CDO28_RS21280 c4025b43db1088fcddfab760b45f65b3 338 Gene3D G3DSA:3.40.50.2300 26 149 3.3E-22 T 06-07-2017 CDO28_RS21280 c4025b43db1088fcddfab760b45f65b3 338 Pfam PF13407 Periplasmic binding protein domain 31 291 8.5E-46 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS21280 c4025b43db1088fcddfab760b45f65b3 338 SUPERFAMILY SSF53822 29 309 1.5E-46 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS21280 c4025b43db1088fcddfab760b45f65b3 338 Gene3D G3DSA:3.40.50.2300 150 299 5.2E-20 T 06-07-2017 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Gene3D G3DSA:3.90.800.10 71 196 4.5E-40 T 06-07-2017 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 SUPERFAMILY SSF52374 6 315 4.83E-106 T 06-07-2017 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Gene3D G3DSA:3.40.50.620 6 70 4.2E-47 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Gene3D G3DSA:3.40.50.620 197 246 4.2E-47 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Gene3D G3DSA:1.10.1160.10 248 330 2.9E-27 T 06-07-2017 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 6 472 1.2E-142 T 06-07-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 SUPERFAMILY SSF48163 316 473 3.53E-32 T 06-07-2017 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 211 219 4.0E-24 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 205 4.0E-24 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.0E-24 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.0E-24 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.0E-24 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Gene3D G3DSA:1.10.10.350 391 473 3.3E-15 T 06-07-2017 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 322 1.2E-121 T 06-07-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS12590 9b0853abb49a803b4527402e664b0283 485 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 6 474 30.235 T 06-07-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 SUPERFAMILY SSF55326 393 562 1.44E-51 T 06-07-2017 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 SUPERFAMILY SSF56042 200 423 1.05E-55 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 SUPERFAMILY SSF56042 567 735 2.39E-35 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 PIRSF PIRSF001587 5 738 4.2E-283 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 SUPERFAMILY SSF55326 15 196 1.64E-49 T 06-07-2017 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 19 735 1.4E-300 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 743 330.739 T 06-07-2017 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 451 556 2.1E-20 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 87 189 2.5E-23 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Gene3D G3DSA:3.30.1330.10 51 195 6.2E-50 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Gene3D G3DSA:3.30.1330.10 413 559 6.8E-54 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 579 707 2.3E-19 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 204 353 3.9E-33 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS00375 ce7cc32a01af18cfbe5bedaffbac08f2 743 Gene3D G3DSA:3.90.650.10 214 355 2.7E-5 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 Pfam PF03466 LysR substrate binding domain 87 284 3.0E-39 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 Gene3D G3DSA:3.40.190.10 176 251 1.1E-18 T 06-07-2017 CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 Gene3D G3DSA:1.10.10.10 2 81 1.1E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 3.4E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 Gene3D G3DSA:3.40.190.10 90 175 1.4E-22 T 06-07-2017 CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 SUPERFAMILY SSF46785 2 110 2.13E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19810 cb7dd4c311badee10597fe101e340542 297 SUPERFAMILY SSF53850 87 290 5.97E-44 T 06-07-2017 CDO28_RS34410 e31fb3179e4f277d5a21349d0cc7687f 335 Pfam PF00589 Phage integrase family 127 301 3.2E-33 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS34410 e31fb3179e4f277d5a21349d0cc7687f 335 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 15 96 1.1E-15 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDO28_RS34410 e31fb3179e4f277d5a21349d0cc7687f 335 Gene3D G3DSA:1.10.443.10 127 307 8.9E-43 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS34410 e31fb3179e4f277d5a21349d0cc7687f 335 Gene3D G3DSA:1.10.150.130 15 99 9.2E-10 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS34410 e31fb3179e4f277d5a21349d0cc7687f 335 SUPERFAMILY SSF56349 125 312 2.94E-44 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS20540 aeeb070a24d399ee7f9dd8c996f47891 226 Gene3D G3DSA:3.40.50.150 15 224 3.2E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS20540 aeeb070a24d399ee7f9dd8c996f47891 226 Pfam PF13649 Methyltransferase domain 51 144 7.5E-13 T 06-07-2017 CDO28_RS20540 aeeb070a24d399ee7f9dd8c996f47891 226 SUPERFAMILY SSF53335 18 224 3.14E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 Gene3D G3DSA:3.30.565.10 279 439 5.5E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 SUPERFAMILY SSF47384 218 290 9.61E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 439 4.9E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 5.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 5.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 394 5.5E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 SMART SM00388 235 293 3.3E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 Pfam PF00672 HAMP domain 167 230 1.9E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 Gene3D G3DSA:1.10.287.130 225 278 1.5E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 285 1.0E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 SMART SM00387 332 441 7.7E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20040 f71daaa39ae08137ec309e80454b60d7 442 SUPERFAMILY SSF55874 290 438 3.27E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 167 7.4E-23 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 136 142 - T 06-07-2017 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 SUPERFAMILY SSF46767 86 170 1.7E-23 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 86 169 1.3E-27 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 Gene3D G3DSA:1.10.10.10 86 171 1.2E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 Gene3D G3DSA:3.30.160.70 3 75 5.9E-6 T 06-07-2017 CDO28_RS29835 cd597122e7541f9ebb2c47763baac357 183 SUPERFAMILY SSF53155 3 81 5.49E-13 T 06-07-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 Gene3D G3DSA:3.20.20.100 5 261 8.4E-93 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 Pfam PF00248 Aldo/keto reductase family 14 256 4.2E-57 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 37 54 - T 06-07-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 SUPERFAMILY SSF51430 5 261 3.8E-88 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 PRINTS PR00069 Aldo-keto reductase signature 33 57 4.9E-45 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 PRINTS PR00069 Aldo-keto reductase signature 120 137 4.9E-45 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 PRINTS PR00069 Aldo-keto reductase signature 89 107 4.9E-45 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 PRINTS PR00069 Aldo-keto reductase signature 191 215 4.9E-45 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 PRINTS PR00069 Aldo-keto reductase signature 154 183 4.9E-45 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS05710 a9e72bc28ca2a66452c844a3118a7efb 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 06-07-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CDO28_RS22660 4ec829e7ca0a1a7a08eda9ac78fcde4c 332 Gene3D G3DSA:1.10.3720.10 103 328 1.5E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22660 4ec829e7ca0a1a7a08eda9ac78fcde4c 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 332 1.2E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22660 4ec829e7ca0a1a7a08eda9ac78fcde4c 332 SUPERFAMILY SSF161098 103 315 6.1E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 312 337 - T 06-07-2017 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 SUPERFAMILY SSF51445 266 547 1.52E-64 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Gene3D G3DSA:2.60.120.260 2 143 2.6E-29 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 SUPERFAMILY SSF49303 159 259 6.71E-7 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Gene3D G3DSA:2.60.40.320 144 260 1.7E-14 T 06-07-2017 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Pfam PF00703 Glycosyl hydrolases family 2 155 259 4.9E-7 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 264 539 2.4E-28 T 06-07-2017 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 44 150 8.7E-12 T 06-07-2017 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 366 381 - T 06-07-2017 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 PRINTS PR00132 Glycosyl hydrolase family 2 signature 270 284 2.1E-8 T 06-07-2017 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 PRINTS PR00132 Glycosyl hydrolase family 2 signature 302 320 2.1E-8 T 06-07-2017 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 PRINTS PR00132 Glycosyl hydrolase family 2 signature 366 381 2.1E-8 T 06-07-2017 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 SUPERFAMILY SSF49785 2 153 1.13E-32 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS30580 b0ac1dd3b672bc62204c670b9cd7f205 754 Gene3D G3DSA:3.20.20.80 264 547 6.3E-62 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 SUPERFAMILY SSF52777 144 375 3.42E-66 T 06-07-2017 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Pfam PF00364 Biotin-requiring enzyme 7 77 1.8E-15 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Gene3D G3DSA:4.10.320.10 90 134 2.9E-15 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Pfam PF02817 e3 binding domain 88 122 1.7E-13 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Gene3D G3DSA:2.40.50.100 13 89 8.5E-21 T 06-07-2017 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Gene3D G3DSA:3.30.559.10 143 375 1.5E-68 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 148 375 7.6E-66 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 SUPERFAMILY SSF47005 84 125 1.44E-10 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS30675 30e38fbb9617b798b5ef92b0dd5c3bff 378 SUPERFAMILY SSF51230 14 92 1.07E-19 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS17865 47f978eab0e9aaee6eecb242a28fb8d6 61 SUPERFAMILY SSF53720 3 58 1.44E-10 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS17865 47f978eab0e9aaee6eecb242a28fb8d6 61 Gene3D G3DSA:3.40.605.10 3 54 9.0E-8 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 SMART SM00382 45 232 5.8E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 Pfam PF00005 ABC transporter 36 184 2.2E-38 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 Gene3D G3DSA:3.40.50.300 19 255 9.0E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 SUPERFAMILY SSF52540 21 254 1.77E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 PIRSF PIRSF039085 17 259 1.5E-106 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS20915 2967a87d6f32aa60c22381b6bd589d33 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 138 6.4E-31 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 7 343 9.8E-155 T 06-07-2017 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 SUPERFAMILY SSF51735 145 309 1.36E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 Gene3D G3DSA:3.40.50.720 177 291 4.5E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 SMART SM00829 16 342 7.1E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 Pfam PF00107 Zinc-binding dehydrogenase 178 305 8.7E-24 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 Gene3D G3DSA:3.90.180.10 2 176 4.7E-51 T 06-07-2017 IPR011032 GroES-like CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 SUPERFAMILY SSF50129 4 177 2.43E-55 T 06-07-2017 IPR011032 GroES-like CDO28_RS15645 33cf4a936dcae090fe9c81b2ab685d7a 344 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 5 344 58.442 T 06-07-2017 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 Hamap MF_00104 Ribonuclease 3 [rnc]. 14 225 25.886 T 06-07-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 Pfam PF14622 Ribonuclease-III-like 25 149 2.1E-31 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 ProSitePatterns PS00517 Ribonuclease III family signature. 46 54 - T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 SUPERFAMILY SSF54768 118 233 3.3E-25 T 06-07-2017 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 227 7.7E-69 T 06-07-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 Pfam PF00035 Double-stranded RNA binding motif 162 226 3.3E-13 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 SUPERFAMILY SSF69065 11 164 1.7E-45 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 Gene3D G3DSA:3.30.160.20 161 227 2.4E-21 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 Gene3D G3DSA:1.10.1520.10 13 150 4.9E-42 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 SMART SM00358 162 229 9.2E-19 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS05150 f408a4bf8be151c7e15f290319dd72ae 238 SMART SM00535 26 157 1.0E-42 T 06-07-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:1.10.3850.10 786 1000 1.2E-52 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.2090.10 185 265 1.6E-10 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82693 270 315 2.14E-11 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82693 140 184 2.14E-11 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.2090.10 692 777 4.1E-10 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:1.20.1640.10 302 495 2.8E-48 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82866 292 490 2.62E-40 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.70.1430 44 141 3.1E-20 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 535 552 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.0E-56 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82714 185 266 3.01E-10 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.70.1320 272 301 2.7E-8 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.70.1320 142 181 2.7E-8 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82714 692 778 2.35E-9 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Pfam PF00873 AcrB/AcrD/AcrF family 6 1000 3.6E-216 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 Gene3D G3DSA:3.30.70.1430 551 642 1.2E-13 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82866 782 1000 7.32E-44 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82693 44 134 5.23E-18 T 06-07-2017 CDO28_RS20060 5cab16601b46c6e01afe7252ee308dd0 1032 SUPERFAMILY SSF82693 548 643 1.1E-15 T 06-07-2017 CDO28_RS27810 abbfbcb933acea615e3f5dd4b1afd355 401 SUPERFAMILY SSF103473 14 395 4.84E-33 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS27810 abbfbcb933acea615e3f5dd4b1afd355 401 Gene3D G3DSA:1.20.1250.20 16 181 5.3E-17 T 06-07-2017 CDO28_RS27810 abbfbcb933acea615e3f5dd4b1afd355 401 Pfam PF07690 Major Facilitator Superfamily 18 321 1.1E-15 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Pfam PF12860 PAS fold 394 494 5.9E-11 T 06-07-2017 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 270 379 4.6E-9 T 06-07-2017 IPR000014 PAS domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SMART SM00387 660 772 3.7E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:1.10.287.130 551 601 1.2E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Pfam PF08447 PAS fold 281 366 3.7E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SMART SM00388 546 615 1.5E-25 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:3.30.565.10 602 769 2.7E-43 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Pfam PF00512 His Kinase A (phospho-acceptor) domain 546 615 2.4E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SUPERFAMILY SSF55874 604 769 4.06E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:3.30.450.20 478 500 6.8E-4 T 06-07-2017 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:3.30.450.20 536 550 6.8E-4 T 06-07-2017 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SMART SM00086 332 373 4.0E-8 T 06-07-2017 IPR001610 PAC motif CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 711 1.8E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 769 1.8E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 750 1.8E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SUPERFAMILY SSF47384 534 616 5.1E-23 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SUPERFAMILY SSF55785 370 489 1.59E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 SUPERFAMILY SSF55785 269 375 3.66E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:3.30.450.20 248 383 4.5E-19 T 06-07-2017 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Gene3D G3DSA:3.30.450.20 384 477 6.0E-9 T 06-07-2017 CDO28_RS05395 bd158d64a113e30a35821e0907d53aed 772 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 661 770 8.9E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 172 185 6.5E-7 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 6.5E-7 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 6.5E-7 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 SUPERFAMILY SSF54810 400 520 2.62E-51 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Pfam PF00117 Glutamine amidotransferase class-I 12 195 7.9E-37 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 SUPERFAMILY SSF52317 8 232 1.99E-55 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 520 54.132 T 06-07-2017 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Gene3D G3DSA:3.40.50.880 5 217 2.6E-57 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 SUPERFAMILY SSF52402 192 413 2.21E-60 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Gene3D G3DSA:3.40.50.620 218 392 9.1E-60 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Pfam PF00958 GMP synthase C terminal domain 428 519 9.2E-43 T 06-07-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 198 9.5E-68 T 06-07-2017 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 211 520 1.4E-146 T 06-07-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Gene3D G3DSA:3.30.300.10 396 520 9.8E-51 T 06-07-2017 CDO28_RS08990 3fa4e5f0cfc5dc5bf1ba0a77325a75e0 520 Pfam PF02540 NAD synthase 215 283 5.6E-6 T 06-07-2017 IPR022310 NAD/GMP synthase CDO28_RS12440 a77f0d5c5b497a2cc43a993e3eddfb31 410 Pfam PF00676 Dehydrogenase E1 component 82 379 1.8E-88 T 06-07-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 CDO28_RS12440 a77f0d5c5b497a2cc43a993e3eddfb31 410 SUPERFAMILY SSF52518 49 406 1.9E-95 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS12440 a77f0d5c5b497a2cc43a993e3eddfb31 410 Gene3D G3DSA:3.40.50.970 7 407 1.6E-134 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS12440 a77f0d5c5b497a2cc43a993e3eddfb31 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 6 45 3.2E-20 T 06-07-2017 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 ProSitePatterns PS00802 Transketolase signature 2. 431 447 - T 06-07-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 17 633 6.8E-240 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Gene3D G3DSA:3.40.50.970 247 340 4.9E-75 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Gene3D G3DSA:3.40.50.970 31 205 4.9E-75 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 14 634 44.203 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 SUPERFAMILY SSF52518 6 203 5.9E-79 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 SUPERFAMILY SSF52518 248 387 5.9E-79 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 15 288 9.8E-117 T 06-07-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 ProSitePatterns PS00801 Transketolase signature 1. 40 59 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Gene3D G3DSA:3.40.50.920 503 633 1.6E-33 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Pfam PF02780 Transketolase, C-terminal domain 502 625 7.2E-28 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 SMART SM00861 325 490 2.6E-62 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Gene3D G3DSA:3.40.50.970 341 502 1.7E-33 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 Pfam PF02779 Transketolase, pyrimidine binding domain 325 485 7.1E-39 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 SUPERFAMILY SSF52922 498 634 7.59E-32 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS06175 70aaefdaf847c32e2435dc14e488a48f 645 SUPERFAMILY SSF52518 322 511 8.52E-57 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS05775 cd6c2ad5b10fe3e150163a86fb701a4b 245 Pfam PF12570 Protein of unknown function (DUF3750) 55 183 4.2E-47 T 06-07-2017 IPR022224 Protein of unknown function DUF3750 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Gene3D G3DSA:3.90.600.10 326 417 8.9E-33 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 SMART SM01209 101 292 3.3E-133 T 06-07-2017 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 418 42.795 T 06-07-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 SMART SM01210 326 418 1.1E-46 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Gene3D G3DSA:3.30.1490.20 119 187 3.8E-28 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 SUPERFAMILY SSF51246 324 418 5.41E-29 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 292 6.2E-80 T 06-07-2017 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Gene3D G3DSA:3.40.50.20 2 93 1.7E-36 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Gene3D G3DSA:3.30.470.20 188 324 1.1E-62 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 418 1.3E-164 T 06-07-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 286 293 - T 06-07-2017 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.4E-35 T 06-07-2017 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 416 7.5E-28 T 06-07-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 SUPERFAMILY SSF56059 102 320 1.68E-61 T 06-07-2017 CDO28_RS06295 d4e87d13deb5534462810bfa42178d92 423 SUPERFAMILY SSF52440 1 101 3.31E-35 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 SUPERFAMILY SSF53850 94 299 2.53E-39 T 06-07-2017 CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 Gene3D G3DSA:1.10.10.10 11 86 1.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 9.8E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 Gene3D G3DSA:3.40.190.10 177 263 1.7E-18 T 06-07-2017 CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 Gene3D G3DSA:3.40.190.10 94 176 4.1E-11 T 06-07-2017 CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 SUPERFAMILY SSF46785 10 116 1.44E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12925 935040f54363b363ff0ae5b8dd2ffe66 318 Pfam PF03466 LysR substrate binding domain 92 298 3.2E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 Gene3D G3DSA:3.40.190.10 67 171 2.4E-33 T 06-07-2017 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 Gene3D G3DSA:3.40.190.10 311 352 2.4E-33 T 06-07-2017 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 SUPERFAMILY SSF53850 68 366 7.91E-65 T 06-07-2017 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 129 142 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 333 359 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 70 86 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 86 107 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 288 307 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 162 178 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 113 127 1.3E-29 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 Pfam PF13416 Bacterial extracellular solute-binding protein 81 325 4.4E-27 T 06-07-2017 CDO28_RS16035 0854345b3c4bd647e759741e64789a11 387 Gene3D G3DSA:3.40.190.10 172 310 6.4E-36 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Gene3D G3DSA:3.10.150.10 6 123 1.6E-17 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 SUPERFAMILY SSF55979 6 123 1.57E-15 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Gene3D G3DSA:3.10.150.10 266 379 2.2E-9 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Gene3D G3DSA:3.10.150.10 139 262 5.6E-17 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 SUPERFAMILY SSF55979 139 258 8.37E-8 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Pfam PF02767 DNA polymerase III beta subunit, central domain 140 257 6.1E-13 T 06-07-2017 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 SUPERFAMILY SSF55979 259 379 8.37E-9 T 06-07-2017 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 260 379 1.4E-5 T 06-07-2017 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 SMART SM00480 20 377 4.0E-28 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 6 376 2.5E-51 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS01785 aa8f64c639f31b4f9d3b813f37f64be9 387 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 6 124 1.2E-15 T 06-07-2017 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Gene3D G3DSA:2.40.30.110 699 786 2.2E-17 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Pfam PF09347 Domain of unknown function (DUF1989) 194 361 9.8E-42 T 06-07-2017 IPR018959 Domain of unknown function DUF1989 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 SUPERFAMILY SSF103025 411 697 1.16E-80 T 06-07-2017 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 SUPERFAMILY SSF101790 702 788 1.16E-17 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Gene3D G3DSA:3.30.1360.120 549 652 1.1E-25 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 684 775 1.8E-19 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Gene3D G3DSA:3.30.70.1400 463 522 6.8E-19 T 06-07-2017 CDO28_RS10080 e164cf6c19b4a29b4f9b532826c3862e 789 Pfam PF01571 Aminomethyltransferase folate-binding domain 417 674 8.4E-72 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 Gene3D G3DSA:1.20.5.100 256 291 1.8E-16 T 06-07-2017 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 SUPERFAMILY SSF46626 42 254 1.31E-66 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 115 135 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 148 172 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 50 69 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 255 270 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 236 255 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 70 89 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 216 235 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 PRINTS PR00603 Cytochrome C1 signature 204 215 2.1E-56 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 Gene3D G3DSA:1.10.760.10 46 255 2.5E-82 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS00175 255ffee3fc4619badf5b72afd502f183 291 Pfam PF02167 Cytochrome C1 family 52 288 1.8E-98 T 06-07-2017 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 SUPERFAMILY SSF56091 41 227 2.06E-48 T 06-07-2017 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Gene3D G3DSA:3.30.1490.70 38 66 3.3E-20 T 06-07-2017 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Gene3D G3DSA:3.30.1490.70 186 228 3.3E-20 T 06-07-2017 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Pfam PF04679 ATP dependent DNA ligase C terminal region 247 333 2.9E-17 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Gene3D G3DSA:2.40.50.140 231 337 3.8E-30 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Gene3D G3DSA:3.30.470.30 67 176 3.3E-29 T 06-07-2017 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 SUPERFAMILY SSF50249 235 333 1.43E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 Pfam PF01068 ATP dependent DNA ligase domain 56 226 7.7E-30 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS01670 a893b8d892e98ad8c2b1fff69f52e960 344 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 44 337 2.3E-89 T 06-07-2017 IPR014146 DNA ligase D, ligase domain CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 Gene3D G3DSA:3.40.140.10 138 257 2.0E-49 T 06-07-2017 CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 SUPERFAMILY SSF102712 181 228 1.44E-5 T 06-07-2017 CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 TIGRFAM TIGR00608 radc: DNA repair protein RadC 50 257 1.2E-66 T 06-07-2017 IPR001405 RadC protein CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 Pfam PF04002 RadC-like JAB domain 142 258 7.2E-45 T 06-07-2017 IPR025657 RadC-like JAB domain CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 SUPERFAMILY SSF47781 61 121 4.89E-7 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 211 216 - T 06-07-2017 IPR020891 Uncharacterised protein family UPF0758, conserved site CDO28_RS00640 0b0d763b2d1b0330ce393c1d71421897 262 Gene3D G3DSA:1.10.150.20 85 118 5.0E-6 T 06-07-2017 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 Pfam PF00230 Major intrinsic protein 152 216 3.8E-5 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 Pfam PF00230 Major intrinsic protein 6 155 7.1E-22 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 PRINTS PR00783 Major intrinsic protein family signature 7 26 6.2E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 PRINTS PR00783 Major intrinsic protein family signature 195 215 6.2E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 PRINTS PR00783 Major intrinsic protein family signature 128 146 6.2E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 PRINTS PR00783 Major intrinsic protein family signature 48 72 6.2E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 PRINTS PR00783 Major intrinsic protein family signature 85 104 6.2E-25 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 Gene3D G3DSA:1.20.1080.10 150 215 5.4E-8 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 Gene3D G3DSA:1.20.1080.10 4 142 4.9E-28 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS19855 acde4e797dc13e71006793947ab63c01 232 SUPERFAMILY SSF81338 5 217 3.27E-43 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 Pfam PF13551 Winged helix-turn helix 13 74 2.4E-11 T 06-07-2017 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 SUPERFAMILY SSF46689 10 118 6.99E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 SUPERFAMILY SSF53098 131 270 2.28E-16 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 Pfam PF00665 Integrase core domain 139 261 1.1E-7 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 Gene3D G3DSA:3.30.420.10 131 290 6.8E-17 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS02165 f787075ee21eed1b038be98152951244 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 410 457 3.0E-10 T 06-07-2017 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 Pfam PF13551 Winged helix-turn helix 13 74 2.4E-11 T 06-07-2017 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 SUPERFAMILY SSF46689 10 118 6.99E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 SUPERFAMILY SSF53098 131 270 2.28E-16 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 Pfam PF00665 Integrase core domain 139 261 1.1E-7 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 Gene3D G3DSA:3.30.420.10 131 290 6.8E-17 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS23510 f787075ee21eed1b038be98152951244 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 410 457 3.0E-10 T 06-07-2017 CDO28_RS05140 d6c1352208dd410678345335477fbb4f 241 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 10 227 8.4E-124 T 06-07-2017 IPR014063 Arsenate resistance ArsH CDO28_RS05140 d6c1352208dd410678345335477fbb4f 241 SUPERFAMILY SSF52218 8 228 6.71E-65 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS05140 d6c1352208dd410678345335477fbb4f 241 Gene3D G3DSA:3.40.50.360 7 230 3.6E-103 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS05140 d6c1352208dd410678345335477fbb4f 241 Pfam PF03358 NADPH-dependent FMN reductase 35 178 3.1E-27 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 SUPERFAMILY SSF51735 234 380 2.63E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Pfam PF02254 TrkA-N domain 236 354 1.1E-21 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Pfam PF02254 TrkA-N domain 3 126 3.6E-24 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 SUPERFAMILY SSF116726 368 451 1.7E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.0E-21 T 06-07-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.0E-21 T 06-07-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.0E-21 T 06-07-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.0E-21 T 06-07-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.0E-21 T 06-07-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Pfam PF02080 TrkA-C domain 385 451 9.5E-15 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Pfam PF02080 TrkA-C domain 157 227 1.5E-9 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Gene3D G3DSA:3.30.70.1450 154 227 9.2E-6 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Gene3D G3DSA:3.30.70.1450 384 452 4.5E-9 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 SUPERFAMILY SSF51735 1 152 7.88E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Gene3D G3DSA:3.40.50.720 234 380 8.5E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 Gene3D G3DSA:3.40.50.720 1 153 1.4E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03075 47565ac035b9fc6cd2326fddf121f16d 458 SUPERFAMILY SSF116726 136 227 1.31E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SMART SM00091 216 284 0.0025 T 06-07-2017 IPR000014 PAS domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Gene3D G3DSA:3.30.450.20 217 330 7.5E-9 T 06-07-2017 CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SMART SM00052 512 755 1.5E-92 T 06-07-2017 IPR001633 EAL domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Pfam PF12860 PAS fold 222 334 9.5E-14 T 06-07-2017 CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 342 498 2.4E-25 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Pfam PF00563 EAL domain 518 750 1.8E-63 T 06-07-2017 IPR001633 EAL domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SUPERFAMILY SSF55785 220 330 4.4E-5 T 06-07-2017 IPR000014 PAS domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SUPERFAMILY SSF55073 346 502 4.24E-31 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Gene3D G3DSA:3.20.20.450 515 757 4.3E-84 T 06-07-2017 IPR001633 EAL domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SMART SM00267 330 502 3.6E-27 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 SUPERFAMILY SSF141868 518 759 8.63E-79 T 06-07-2017 IPR001633 EAL domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Pfam PF00990 Diguanylate cyclase, GGDEF domain 343 495 1.3E-31 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12790 4cef18e5a3bd32a51bfa9e6d0ded2beb 773 Gene3D G3DSA:3.30.70.270 343 507 1.1E-35 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 1506 1859 1.6E-66 T 06-07-2017 IPR010080 Thioester reductase-like domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 ProSitePatterns PS00455 Putative AMP-binding domain signature. 642 653 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF13649 Methyltransferase domain 1022 1118 2.0E-11 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.40.50.980 500 650 1.5E-29 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF52777 51 214 2.61E-40 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF00550 Phosphopantetheine attachment site 1401 1460 4.3E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.40.50.980 651 803 3.5E-32 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.40.50.150 996 1131 7.4E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF56801 470 949 3.66E-119 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF56801 1337 1411 3.66E-119 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:1.10.1200.10 1403 1462 2.1E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF00501 AMP-binding enzyme 507 895 3.8E-75 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF51735 1505 1812 1.6E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:2.30.38.10 809 885 6.5E-21 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF13745 HxxPF-repeated domain 365 440 1.1E-18 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF53335 991 1135 4.22E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.40.50.720 1506 1811 3.0E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF52777 232 476 9.56E-49 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 SUPERFAMILY SSF47336 1393 1462 1.3E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.30.300.30 1342 1402 1.5E-26 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Gene3D G3DSA:3.30.300.30 890 947 1.5E-26 T 06-07-2017 CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 527 918 6.3E-98 T 06-07-2017 IPR010071 Amino acid adenylation domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF00668 Condensation domain 47 340 8.3E-57 T 06-07-2017 IPR001242 Condensation domain CDO28_RS34380 28eed779e794791bde22cdf33d8d9d76 1875 Pfam PF07993 Male sterility protein 1508 1750 1.8E-47 T 06-07-2017 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 CDO28_RS14105 aa5b86c475a957e00340b9d8bad8d3e1 646 Pfam PF01551 Peptidase family M23 509 606 3.9E-30 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS14105 aa5b86c475a957e00340b9d8bad8d3e1 646 SUPERFAMILY SSF51261 387 608 9.42E-61 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS14105 aa5b86c475a957e00340b9d8bad8d3e1 646 Gene3D G3DSA:2.70.70.10 465 608 8.9E-46 T 06-07-2017 CDO28_RS20975 6c4046c6784ff09e14c4b02d4809635d 304 Pfam PF00005 ABC transporter 26 184 4.7E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20975 6c4046c6784ff09e14c4b02d4809635d 304 SMART SM00382 35 234 3.0E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20975 6c4046c6784ff09e14c4b02d4809635d 304 Gene3D G3DSA:3.40.50.300 4 258 4.1E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20975 6c4046c6784ff09e14c4b02d4809635d 304 SUPERFAMILY SSF52540 22 255 3.74E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 72 743 9.9E-117 T 06-07-2017 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 70 743 1.2E-119 T 06-07-2017 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 Gene3D G3DSA:2.40.170.20 181 743 1.4E-99 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 175 5.3E-11 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 Pfam PF00593 TonB dependent receptor 486 741 8.4E-37 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 Gene3D G3DSA:2.170.130.10 71 180 8.1E-17 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS15270 9e43216a84160c3487e74bbfb55ba303 743 SUPERFAMILY SSF56935 64 743 1.08E-95 T 06-07-2017 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 194 8.3E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 Pfam PF00072 Response regulator receiver domain 5 113 2.6E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 SUPERFAMILY SSF52172 3 164 8.35E-33 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 SMART SM00421 137 194 2.4E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 SMART SM00448 3 113 6.5E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 Gene3D G3DSA:3.40.50.2300 3 145 1.1E-32 T 06-07-2017 CDO28_RS23380 2cffa121d2f3114c7c4414b8d18c8ec6 204 Gene3D G3DSA:1.10.10.10 146 201 3.4E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 SMART SM00967 48 124 9.8E-9 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 Gene3D G3DSA:3.30.1330.30 26 121 2.0E-29 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 Gene3D G3DSA:3.40.1280.10 131 281 1.2E-47 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 SUPERFAMILY SSF75217 121 282 3.34E-42 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 SUPERFAMILY SSF55315 20 120 4.59E-23 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 49 120 1.2E-8 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 CDO28_RS08590 7bebab848bbe19c6e6952846cb1be77b 288 Pfam PF00588 SpoU rRNA Methylase family 135 275 7.0E-35 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 10 238 4.2E-84 T 06-07-2017 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 SUPERFAMILY SSF64288 62 236 3.45E-34 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 Gene3D G3DSA:3.40.1410.10 92 228 3.4E-36 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 2.0E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 4.6E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 4.6E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 SMART SM00345 15 74 1.1E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 Gene3D G3DSA:1.10.10.10 6 82 5.2E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 Pfam PF07702 UTRA domain 96 232 6.6E-25 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 SMART SM00866 95 233 1.2E-20 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS19965 1ff06658acf66e3f9b63dcd80c0ec798 243 SUPERFAMILY SSF46785 7 78 2.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 SUPERFAMILY SSF46894 235 302 3.3E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 SMART SM00421 243 300 4.6E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 Gene3D G3DSA:1.10.10.10 245 302 1.4E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 Pfam PF00072 Response regulator receiver domain 13 125 1.8E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 SUPERFAMILY SSF52172 13 142 4.55E-40 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 246 260 8.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 276 288 8.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 260 276 8.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 SMART SM00448 11 124 2.2E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 Gene3D G3DSA:3.40.50.2300 12 136 2.4E-39 T 06-07-2017 CDO28_RS30345 e62e12bbe82061a864b218602d4a2fee 307 Pfam PF00196 Bacterial regulatory proteins, luxR family 246 300 1.2E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31365 806327dfb82e04f9a02a9a17f7e8af55 572 SUPERFAMILY SSF56300 9 128 3.14E-25 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS31365 806327dfb82e04f9a02a9a17f7e8af55 572 SUPERFAMILY SSF56300 210 386 3.14E-25 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS31365 806327dfb82e04f9a02a9a17f7e8af55 572 Pfam PF00149 Calcineurin-like phosphoesterase 9 338 1.6E-7 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS31365 806327dfb82e04f9a02a9a17f7e8af55 572 Gene3D G3DSA:3.60.21.10 9 116 8.1E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS31365 806327dfb82e04f9a02a9a17f7e8af55 572 Gene3D G3DSA:3.60.21.10 183 381 8.1E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PIRSF PIRSF000350 3 458 3.9E-90 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Gene3D G3DSA:3.50.50.60 147 253 1.5E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Gene3D G3DSA:3.50.50.60 8 145 1.1E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Gene3D G3DSA:3.50.50.60 254 330 2.2E-13 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 2.3E-23 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 2.3E-23 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.3E-23 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 2.3E-23 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 2.3E-23 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 311 6.1E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 260 274 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 309 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 337 358 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 3.0E-58 T 06-07-2017 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 SUPERFAMILY SSF55424 340 455 1.65E-31 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 341 448 9.4E-25 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 Gene3D G3DSA:3.30.390.30 339 451 8.0E-31 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS08295 5564059edc042e133638254f3ea8e9d8 473 SUPERFAMILY SSF51905 8 364 5.99E-45 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS09925 57403dd85e0f903377a9847de0c1d100 324 SUPERFAMILY SSF51556 5 322 9.77E-72 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS09925 57403dd85e0f903377a9847de0c1d100 324 Hamap MF_01962 Adenine deaminase. 1 311 59.926 T 06-07-2017 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS09925 57403dd85e0f903377a9847de0c1d100 324 Gene3D G3DSA:3.20.20.140 4 322 7.6E-83 T 06-07-2017 CDO28_RS09925 57403dd85e0f903377a9847de0c1d100 324 Pfam PF00962 Adenosine/AMP deaminase 5 319 1.2E-63 T 06-07-2017 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 CDO28_RS09925 57403dd85e0f903377a9847de0c1d100 324 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 322 8.4E-100 T 06-07-2017 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 CDO28_RS02230 529bf4bf03ef626e123b4013c0e8e39a 261 SUPERFAMILY SSF52777 171 235 2.3E-17 T 06-07-2017 CDO28_RS02230 529bf4bf03ef626e123b4013c0e8e39a 261 SUPERFAMILY SSF52777 2 140 2.3E-17 T 06-07-2017 CDO28_RS02230 529bf4bf03ef626e123b4013c0e8e39a 261 Gene3D G3DSA:3.30.559.10 22 235 3.8E-34 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 CDO28_RS20970 08d3a2d0652fa5bd5903b41dd36f2a52 273 Gene3D G3DSA:1.10.3720.10 59 266 1.9E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20970 08d3a2d0652fa5bd5903b41dd36f2a52 273 SUPERFAMILY SSF161098 63 250 1.3E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20970 08d3a2d0652fa5bd5903b41dd36f2a52 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 269 4.7E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Pfam PF01636 Phosphotransferase enzyme family 34 243 2.1E-24 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Gene3D G3DSA:2.70.70.10 429 531 8.9E-20 T 06-07-2017 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Pfam PF01551 Peptidase family M23 432 531 4.8E-17 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 SUPERFAMILY SSF53383 599 1005 3.43E-106 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 SUPERFAMILY SSF56112 13 320 9.77E-46 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Gene3D G3DSA:3.40.640.10 633 885 6.2E-74 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 SUPERFAMILY SSF51261 429 532 1.73E-19 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Gene3D G3DSA:3.90.1200.10 125 321 5.0E-20 T 06-07-2017 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Pfam PF00202 Aminotransferase class-III 599 1002 3.3E-72 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 Gene3D G3DSA:3.90.1150.10 886 1005 5.9E-34 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS28240 03cb8e06076e50a6dba14c1b502fb73c 1008 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 814 852 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 Gene3D G3DSA:3.20.20.80 578 645 1.4E-71 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 Gene3D G3DSA:3.20.20.80 297 540 1.4E-71 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 Gene3D G3DSA:2.60.40.320 199 296 1.2E-5 T 06-07-2017 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 SUPERFAMILY SSF51445 294 642 2.88E-107 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 SUPERFAMILY SSF49785 12 193 9.86E-49 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 Gene3D G3DSA:2.60.120.260 13 193 1.7E-17 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 SUPERFAMILY SSF49303 744 818 6.69E-11 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 CDO28_RS17745 2c607903456d29a277b30e08a4266602 824 SUPERFAMILY SSF49303 199 296 1.01E-13 T 06-07-2017 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 CDO28_RS05180 883677e8e7ba8640bda19cd4f66388ac 77 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 39 6.0E-7 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS05180 883677e8e7ba8640bda19cd4f66388ac 77 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 3 45 5.5E-17 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS05180 883677e8e7ba8640bda19cd4f66388ac 77 SMART SM00966 3 49 3.0E-10 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS05180 883677e8e7ba8640bda19cd4f66388ac 77 Gene3D G3DSA:2.10.260.10 2 39 7.2E-8 T 06-07-2017 CDO28_RS05180 883677e8e7ba8640bda19cd4f66388ac 77 SUPERFAMILY SSF89447 2 39 3.49E-9 T 06-07-2017 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 ProSitePatterns PS00211 ABC transporters family signature. 448 462 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Gene3D G3DSA:3.40.50.300 9 263 1.9E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Gene3D G3DSA:3.40.50.300 296 549 3.1E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 273 3.6E-5 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 530 553 0.033 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 SMART SM00382 39 239 5.7E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 SMART SM00382 333 540 5.3E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 SUPERFAMILY SSF52540 320 547 3.24E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Pfam PF00005 ABC transporter 30 190 2.3E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 Pfam PF00005 ABC transporter 324 476 4.7E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23410 1fb6a203dee9bb27257f9510122055aa 557 SUPERFAMILY SSF52540 10 261 2.08E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02360 740e0c4aacc94f4b68895787f8ab9f10 373 SUPERFAMILY SSF51395 1 370 1.32E-118 T 06-07-2017 CDO28_RS02360 740e0c4aacc94f4b68895787f8ab9f10 373 Gene3D G3DSA:3.20.20.70 2 368 3.8E-127 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS02360 740e0c4aacc94f4b68895787f8ab9f10 373 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 348 1.2E-85 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDO28_RS09520 c306c0a14b9d271fd32a851864c06bbb 421 Pfam PF07690 Major Facilitator Superfamily 25 305 1.1E-18 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS09520 c306c0a14b9d271fd32a851864c06bbb 421 Gene3D G3DSA:1.20.1250.20 209 388 1.3E-9 T 06-07-2017 CDO28_RS09520 c306c0a14b9d271fd32a851864c06bbb 421 SUPERFAMILY SSF103473 10 394 2.22E-34 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS09520 c306c0a14b9d271fd32a851864c06bbb 421 Gene3D G3DSA:1.20.1250.20 17 191 6.6E-15 T 06-07-2017 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 SUPERFAMILY SSF56003 145 729 2.22E-164 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 595 726 7.2E-56 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 352 442 7.2E-56 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 161 668 4.1E-123 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 174 272 2.3E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.90.1170.50 5 125 2.8E-33 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 32 137 2.6E-22 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 280 304 6.7E-14 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 126 173 6.7E-14 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 SMART SM01008 32 138 5.2E-28 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 Gene3D G3DSA:3.30.365.10 446 594 5.3E-30 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS20555 e66109209bea463d009b9a8edbad1753 732 SUPERFAMILY SSF54665 9 136 3.66E-32 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS24370 d78265b9907fec16f1fa1bfde1a6c1ae 85 Gene3D G3DSA:3.10.20.30 9 72 6.0E-8 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS24370 d78265b9907fec16f1fa1bfde1a6c1ae 85 SUPERFAMILY SSF54292 6 79 1.7E-14 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS24370 d78265b9907fec16f1fa1bfde1a6c1ae 85 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 6 77 5.0E-14 T 06-07-2017 CDO28_RS25290 db9e638864d5f7e68e2936210b84cd0d 360 Pfam PF04909 Amidohydrolase 44 349 7.1E-55 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS25290 db9e638864d5f7e68e2936210b84cd0d 360 SUPERFAMILY SSF51556 2 31 3.59E-62 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25290 db9e638864d5f7e68e2936210b84cd0d 360 SUPERFAMILY SSF51556 60 349 3.59E-62 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25290 db9e638864d5f7e68e2936210b84cd0d 360 Gene3D G3DSA:3.20.20.140 3 352 2.3E-63 T 06-07-2017 CDO28_RS13630 ce1031b3cf3ee9bede907e813a1d16d7 344 Gene3D G3DSA:3.40.190.10 30 115 2.7E-21 T 06-07-2017 CDO28_RS13630 ce1031b3cf3ee9bede907e813a1d16d7 344 Gene3D G3DSA:3.40.190.10 275 333 2.7E-21 T 06-07-2017 CDO28_RS13630 ce1031b3cf3ee9bede907e813a1d16d7 344 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 33 321 2.0E-68 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS13630 ce1031b3cf3ee9bede907e813a1d16d7 344 Gene3D G3DSA:3.40.190.100 117 274 1.2E-43 T 06-07-2017 CDO28_RS13630 ce1031b3cf3ee9bede907e813a1d16d7 344 SUPERFAMILY SSF53850 27 337 5.97E-79 T 06-07-2017 CDO28_RS12155 5da6e2e3c446b5b669d28cc747dcbb7b 164 PIRSF PIRSF008757 1 164 9.5E-64 T 06-07-2017 IPR010371 Uncharacterised protein family UPF0303 CDO28_RS12155 5da6e2e3c446b5b669d28cc747dcbb7b 164 Hamap MF_00761 UPF0303 protein . 4 155 35.525 T 06-07-2017 IPR010371 Uncharacterised protein family UPF0303 CDO28_RS12155 5da6e2e3c446b5b669d28cc747dcbb7b 164 SUPERFAMILY SSF143744 13 152 6.28E-26 T 06-07-2017 CDO28_RS12155 5da6e2e3c446b5b669d28cc747dcbb7b 164 Pfam PF03928 Haem-degrading 22 149 7.2E-32 T 06-07-2017 IPR005624 Haem-degrading CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 SUPERFAMILY SSF53067 2 242 5.87E-65 T 06-07-2017 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 288 433 1.4E-25 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 SUPERFAMILY SSF53067 243 475 4.05E-46 T 06-07-2017 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.4E-59 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 Gene3D G3DSA:3.30.420.40 1 241 8.8E-63 T 06-07-2017 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 PIRSF PIRSF000538 1 477 3.6E-127 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS14325 7dd563a0da1268e5f6ee8176ae86fd78 477 Gene3D G3DSA:3.30.420.40 245 456 5.2E-36 T 06-07-2017 CDO28_RS03900 f2ca3e296eb35acafc1698da4b61213e 234 Gene3D G3DSA:3.60.15.10 1 234 9.3E-45 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS03900 f2ca3e296eb35acafc1698da4b61213e 234 Pfam PF13483 Beta-lactamase superfamily domain 3 187 6.3E-19 T 06-07-2017 CDO28_RS03900 f2ca3e296eb35acafc1698da4b61213e 234 SMART SM00849 7 198 2.8E-8 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS03900 f2ca3e296eb35acafc1698da4b61213e 234 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 234 34.019 T 06-07-2017 IPR022877 Protein of unknown funcion UPF0173 CDO28_RS03900 f2ca3e296eb35acafc1698da4b61213e 234 SUPERFAMILY SSF56281 1 216 1.35E-28 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 SUPERFAMILY SSF55347 128 242 3.05E-13 T 06-07-2017 CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 SUPERFAMILY SSF51735 5 153 2.96E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 124 9.7E-22 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 Gene3D G3DSA:3.40.50.720 4 141 4.2E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 Gene3D G3DSA:3.30.360.10 299 354 1.4E-21 T 06-07-2017 CDO28_RS09630 05281603409eaca9c66b9186c6f309e0 354 Gene3D G3DSA:3.30.360.10 142 256 1.4E-21 T 06-07-2017 CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 Pfam PF00005 ABC transporter 40 183 6.9E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 SUPERFAMILY SSF52540 24 265 1.6E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 SUPERFAMILY SSF50331 258 363 6.23E-7 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 Gene3D G3DSA:3.40.50.300 22 262 1.4E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS02725 da609a8c80ed8a6013cee51d357d6ec0 369 SMART SM00382 48 233 1.3E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 SUPERFAMILY SSF50249 215 313 6.85E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 24 320 1.4E-89 T 06-07-2017 IPR014146 DNA ligase D, ligase domain CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Gene3D G3DSA:3.30.1490.70 166 208 1.7E-20 T 06-07-2017 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Gene3D G3DSA:3.30.1490.70 18 46 1.7E-20 T 06-07-2017 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 SUPERFAMILY SSF56091 14 207 9.11E-50 T 06-07-2017 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Pfam PF04679 ATP dependent DNA ligase C terminal region 227 313 1.7E-15 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Gene3D G3DSA:3.30.470.30 47 160 1.4E-32 T 06-07-2017 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Pfam PF01068 ATP dependent DNA ligase domain 36 206 1.1E-30 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS02035 ada1bd1368d12a3eaab9589106fb798b 323 Gene3D G3DSA:2.40.50.140 211 320 1.1E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 Pfam PF00361 Proton-conducting membrane transporter 134 446 1.7E-91 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 445 464 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 266 292 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 334 346 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 111 131 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 265 2.0E-56 T 06-07-2017 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 122 6.3E-27 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 85 105 9.9E-15 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 284 306 9.9E-15 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 59 83 9.9E-15 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 444 466 9.9E-15 T 06-07-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDO28_RS04070 44bff36b881554e464b4d1a2e9286760 664 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 659 1.7E-281 T 06-07-2017 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 226 7.6E-7 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 120 3.1E-23 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 Gene3D G3DSA:3.30.360.10 139 330 1.5E-38 T 06-07-2017 CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 Gene3D G3DSA:3.40.50.720 1 138 1.7E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 SUPERFAMILY SSF55347 129 296 2.62E-29 T 06-07-2017 CDO28_RS10830 a04a8794e12b19a0ddcb45f63e612e74 333 SUPERFAMILY SSF51735 2 151 2.63E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 Pfam PF00425 chorismate binding enzyme 119 373 3.6E-84 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 Gene3D G3DSA:3.60.120.10 23 377 1.6E-110 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 54 376 6.3E-124 T 06-07-2017 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 PRINTS PR00095 Anthranilate synthase component I signature 329 343 2.5E-10 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 PRINTS PR00095 Anthranilate synthase component I signature 234 247 2.5E-10 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 PRINTS PR00095 Anthranilate synthase component I signature 314 328 2.5E-10 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 PRINTS PR00095 Anthranilate synthase component I signature 220 233 2.5E-10 T 06-07-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS13130 ca1929027bc2ea431c0c236d3552c134 385 SUPERFAMILY SSF56322 7 377 8.11E-110 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS26855 ae3f0af293dc99ddbf22daffedc23a30 188 SUPERFAMILY SSF54427 47 176 2.44E-9 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS14930 41ae3d7c13b4d89643541dc0f84a1250 137 Pfam PF07883 Cupin domain 44 112 8.7E-18 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS14930 41ae3d7c13b4d89643541dc0f84a1250 137 SUPERFAMILY SSF51182 10 130 1.01E-26 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS14930 41ae3d7c13b4d89643541dc0f84a1250 137 PIRSF PIRSF037087 1 136 1.4E-69 T 06-07-2017 IPR017102 Uncharacterised conserved protein UCP037087 CDO28_RS14930 41ae3d7c13b4d89643541dc0f84a1250 137 Gene3D G3DSA:2.60.120.10 26 120 1.2E-23 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 SUPERFAMILY SSF52540 4 243 4.17E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Gene3D G3DSA:2.40.50.140 285 342 1.5E-8 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Gene3D G3DSA:2.40.50.100 239 284 1.0E-18 T 06-07-2017 CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Gene3D G3DSA:2.40.50.100 345 358 1.0E-18 T 06-07-2017 CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 SUPERFAMILY SSF50331 237 358 6.32E-24 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 SMART SM00382 28 211 1.8E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Pfam PF08402 TOBE domain 280 351 3.3E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Gene3D G3DSA:3.40.50.300 4 234 2.7E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26835 f5a03c42c965fcc7f2430ba3b10eca5b 377 Pfam PF00005 ABC transporter 19 161 4.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11665 20aeb179f77074800e455fc3b412a480 235 Gene3D G3DSA:3.40.50.10090 30 140 1.9E-12 T 06-07-2017 CDO28_RS11665 20aeb179f77074800e455fc3b412a480 235 Gene3D G3DSA:3.40.50.10090 141 198 4.4E-4 T 06-07-2017 CDO28_RS11665 20aeb179f77074800e455fc3b412a480 235 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 214 1.7E-26 T 06-07-2017 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11665 20aeb179f77074800e455fc3b412a480 235 SUPERFAMILY SSF69618 1 235 8.63E-40 T 06-07-2017 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS06170 b8026e233bb4c4424eb67f716465cf82 307 PIRSF PIRSF006232 16 300 2.1E-86 T 06-07-2017 IPR012093 Pirin CDO28_RS06170 b8026e233bb4c4424eb67f716465cf82 307 Gene3D G3DSA:2.60.120.10 27 264 4.1E-65 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS06170 b8026e233bb4c4424eb67f716465cf82 307 SUPERFAMILY SSF51182 21 304 1.03E-81 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS06170 b8026e233bb4c4424eb67f716465cf82 307 Pfam PF05726 Pirin C-terminal cupin domain 192 292 1.4E-29 T 06-07-2017 IPR008778 Pirin, C-terminal domain CDO28_RS06170 b8026e233bb4c4424eb67f716465cf82 307 Pfam PF02678 Pirin 34 139 6.8E-35 T 06-07-2017 IPR003829 Pirin, N-terminal domain CDO28_RS09595 58d2778e282df7845dadab7dcf517b2f 340 Pfam PF01380 SIS domain 198 280 4.2E-13 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS09595 58d2778e282df7845dadab7dcf517b2f 340 Pfam PF01380 SIS domain 43 162 8.9E-16 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS09595 58d2778e282df7845dadab7dcf517b2f 340 Gene3D G3DSA:3.40.50.10490 183 338 2.2E-35 T 06-07-2017 CDO28_RS09595 58d2778e282df7845dadab7dcf517b2f 340 Gene3D G3DSA:3.40.50.10490 4 182 1.1E-24 T 06-07-2017 CDO28_RS09595 58d2778e282df7845dadab7dcf517b2f 340 SUPERFAMILY SSF53697 4 338 5.15E-67 T 06-07-2017 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 Gene3D G3DSA:3.40.50.1000 8 224 3.8E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 9 203 3.8E-43 T 06-07-2017 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 113 126 3.5E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 8 19 3.5E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 188 201 3.5E-11 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 199 9.9E-16 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 11 190 8.9E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS19240 8d917a22d910c435f2761de5a7594535 234 SUPERFAMILY SSF56784 8 227 1.04E-42 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS17565 c0b16fbd8b41e58fd47b52cdad9d38d0 266 Pfam PF04773 FecR protein 20 119 5.6E-12 T 06-07-2017 IPR006860 FecR protein CDO28_RS19340 72fa7b1fe137640a9f36057020fa9abe 119 SUPERFAMILY SSF46785 7 116 1.12E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19340 72fa7b1fe137640a9f36057020fa9abe 119 Gene3D G3DSA:1.10.10.10 7 116 5.2E-36 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19340 72fa7b1fe137640a9f36057020fa9abe 119 Pfam PF01638 HxlR-like helix-turn-helix 18 104 1.2E-22 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS26440 cb48534bf919961593c92a570319b577 384 Pfam PF13477 Glycosyl transferase 4-like 22 163 5.5E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS26440 cb48534bf919961593c92a570319b577 384 Gene3D G3DSA:3.40.50.2000 202 360 2.1E-20 T 06-07-2017 CDO28_RS26440 cb48534bf919961593c92a570319b577 384 SUPERFAMILY SSF53756 22 375 8.46E-64 T 06-07-2017 CDO28_RS26440 cb48534bf919961593c92a570319b577 384 Pfam PF00534 Glycosyl transferases group 1 197 361 4.2E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 Pfam PF00459 Inositol monophosphatase family 4 242 1.1E-45 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 Gene3D G3DSA:3.40.190.80 156 260 3.7E-40 T 06-07-2017 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 Gene3D G3DSA:3.30.540.10 3 155 2.8E-38 T 06-07-2017 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 SUPERFAMILY SSF56655 2 260 7.72E-68 T 06-07-2017 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 6 257 1.7E-86 T 06-07-2017 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 1.6E-13 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 1.6E-13 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 1.6E-13 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS26405 626dec240979f1b1e1c99bfa5a4edb6e 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 1.6E-13 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 Gene3D G3DSA:2.40.50.100 61 92 7.4E-16 T 06-07-2017 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 Gene3D G3DSA:2.40.50.100 288 323 7.4E-16 T 06-07-2017 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 Pfam PF00529 HlyD membrane-fusion protein of T1SS 31 397 2.7E-21 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 SUPERFAMILY SSF111369 61 118 1.7E-5 T 06-07-2017 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 303 324 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 336 360 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 418 438 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 360 383 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 70 90 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 403 418 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 28 51 5.0E-59 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 17 439 2.3E-141 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS29185 4aa305506ad871aaa1c5328bf87d0e72 439 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 270 379 1.9E-9 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS22900 653b2e04d31d668edd30356214e39d86 336 SUPERFAMILY SSF53850 25 333 1.35E-67 T 06-07-2017 CDO28_RS22900 653b2e04d31d668edd30356214e39d86 336 Gene3D G3DSA:3.40.190.10 25 137 1.4E-10 T 06-07-2017 CDO28_RS22900 653b2e04d31d668edd30356214e39d86 336 Gene3D G3DSA:3.40.190.10 138 278 5.2E-33 T 06-07-2017 CDO28_RS22900 653b2e04d31d668edd30356214e39d86 336 Pfam PF13416 Bacterial extracellular solute-binding protein 42 301 2.5E-43 T 06-07-2017 CDO28_RS26110 ca0738034b1b97d444b688e16a56f34f 158 Pfam PF00583 Acetyltransferase (GNAT) family 57 136 6.9E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS26110 ca0738034b1b97d444b688e16a56f34f 158 SUPERFAMILY SSF55729 6 150 1.48E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS26110 ca0738034b1b97d444b688e16a56f34f 158 Gene3D G3DSA:3.40.630.30 6 136 3.3E-29 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00100 18d0ba875fbf502ad092a172424aee75 269 Pfam PF00005 ABC transporter 35 185 3.6E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS00100 18d0ba875fbf502ad092a172424aee75 269 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS00100 18d0ba875fbf502ad092a172424aee75 269 Gene3D G3DSA:3.40.50.300 15 246 4.1E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00100 18d0ba875fbf502ad092a172424aee75 269 SMART SM00382 44 233 1.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS00100 18d0ba875fbf502ad092a172424aee75 269 SUPERFAMILY SSF52540 18 246 3.09E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 SMART SM00421 180 237 3.7E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 4.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 4.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 4.7E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 Gene3D G3DSA:1.10.10.10 176 238 1.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 235 1.4E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 ProSitePatterns PS00622 LuxR-type HTH domain signature. 197 224 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33630 918b4ab75a5d734057d9edf23f38527c 244 SUPERFAMILY SSF46894 179 239 1.73E-18 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 SUPERFAMILY SSF55729 12 194 1.59E-37 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 ProSitePatterns PS00949 Autoinducer synthase family signature. 24 49 - T 06-07-2017 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 Gene3D G3DSA:3.40.630.30 11 200 7.2E-61 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 123 144 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 20 39 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 145 166 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 40 62 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 7.2E-37 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS23465 b6f53f969d8ef554741db6c876b5d93f 206 Pfam PF00765 Autoinducer synthase 18 191 1.3E-56 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS18170 d5a10206f09e1a2db66a116fed2555bd 530 Pfam PF13005 zinc-finger binding domain of transposase IS66 143 172 6.2E-8 T 06-07-2017 IPR024474 Zinc-finger binding domain of transposase IS66 CDO28_RS18170 d5a10206f09e1a2db66a116fed2555bd 530 Pfam PF13007 Transposase C of IS166 homeodomain 52 128 5.0E-12 T 06-07-2017 IPR024463 Transposase TnpC, homeodomain CDO28_RS18170 d5a10206f09e1a2db66a116fed2555bd 530 Pfam PF13817 IS66 C-terminal element 488 526 2.3E-15 T 06-07-2017 CDO28_RS18170 d5a10206f09e1a2db66a116fed2555bd 530 Pfam PF03050 Transposase IS66 family 192 481 9.7E-90 T 06-07-2017 IPR004291 Transposase, IS66 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 4.1E-45 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 PIRSF PIRSF036480 1 282 1.1E-109 T 06-07-2017 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 Pfam PF00551 Formyl transferase 86 263 1.1E-38 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 SUPERFAMILY SSF53328 86 282 2.62E-60 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 Gene3D G3DSA:3.40.50.170 86 282 1.8E-54 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 1.9E-98 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 Pfam PF13740 ACT domain 5 78 4.5E-5 T 06-07-2017 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 SUPERFAMILY SSF55021 3 82 1.37E-15 T 06-07-2017 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 46.271 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS22260 7fc9472dfcfdf52bdb584b2268ae3447 294 Gene3D G3DSA:3.30.70.260 1 81 2.0E-22 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 Gene3D G3DSA:3.30.390.30 320 404 1.2E-30 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 Gene3D G3DSA:3.50.50.60 4 104 1.2E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 Pfam PF14759 Reductase C-terminal 320 404 4.0E-30 T 06-07-2017 IPR028202 Reductase, C-terminal CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 301 1.0E-57 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 Gene3D G3DSA:3.50.50.60 105 310 6.7E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 SUPERFAMILY SSF51905 4 188 1.56E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 4.0E-20 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 4.0E-20 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 4.0E-20 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 4.0E-20 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.0E-20 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.7E-13 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.7E-13 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.7E-13 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 3.7E-13 T 06-07-2017 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 SUPERFAMILY SSF55424 314 404 1.17E-27 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS06640 c896603d18007b569de2fcfc7efd43ae 405 SUPERFAMILY SSF51905 141 312 1.01E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 190 424 4.9E-72 T 06-07-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 SUPERFAMILY SSF54675 2 157 1.29E-48 T 06-07-2017 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 SUPERFAMILY SSF51690 139 423 1.88E-86 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 PIRSF PIRSF000484 10 420 2.6E-65 T 06-07-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 Gene3D G3DSA:3.20.140.10 3 409 7.3E-148 T 06-07-2017 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 20 421 8.4E-91 T 06-07-2017 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDO28_RS07675 9baf1367e506631a62506fceaf52ddd5 434 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 17 427 41.206 T 06-07-2017 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDO28_RS10705 7ca81586c1c9164df3e90b33f46d5173 232 Pfam PF06242 Protein of unknown function (DUF1013) 35 172 4.6E-67 T 06-07-2017 IPR010421 Protein of unknown function DUF1013 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Gene3D G3DSA:3.40.190.10 91 170 3.6E-21 T 06-07-2017 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Gene3D G3DSA:3.40.190.10 271 297 3.6E-21 T 06-07-2017 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Gene3D G3DSA:3.40.190.10 171 267 4.7E-21 T 06-07-2017 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Gene3D G3DSA:1.10.10.10 2 84 4.6E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 SUPERFAMILY SSF53850 93 295 5.79E-33 T 06-07-2017 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.0E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 Pfam PF03466 LysR substrate binding domain 95 296 7.0E-22 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS09500 0af13a884c8869af79519d1d22d0389b 308 SUPERFAMILY SSF46785 3 82 1.09E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12450 611426855dc510d4bf8ceb46230ffc96 175 SUPERFAMILY SSF46785 51 151 1.5E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12450 611426855dc510d4bf8ceb46230ffc96 175 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 71 132 1.3E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12450 611426855dc510d4bf8ceb46230ffc96 175 Gene3D G3DSA:1.10.10.10 48 160 2.0E-39 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27135 dfefc4e9ceffc5a6105be82ee53cf7b8 219 Pfam PF00149 Calcineurin-like phosphoesterase 9 172 2.2E-10 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS27135 dfefc4e9ceffc5a6105be82ee53cf7b8 219 Gene3D G3DSA:3.60.21.10 7 205 2.4E-49 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS27135 dfefc4e9ceffc5a6105be82ee53cf7b8 219 SUPERFAMILY SSF56300 7 204 8.75E-43 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 SUPERFAMILY SSF52172 4 187 5.12E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 06-07-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Gene3D G3DSA:3.40.50.2300 4 126 2.1E-32 T 06-07-2017 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 484 504 7.0E-9 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 467 484 7.0E-9 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 SMART SM00448 3 116 1.9E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Pfam PF00158 Sigma-54 interaction domain 145 311 3.6E-67 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Pfam PF00072 Response regulator receiver domain 5 113 2.6E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 SUPERFAMILY SSF46689 453 504 2.19E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Gene3D G3DSA:1.10.8.60 318 391 4.1E-23 T 06-07-2017 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Pfam PF02954 Bacterial regulatory protein, Fis family 461 501 2.6E-12 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Gene3D G3DSA:1.10.10.60 438 504 1.2E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 Gene3D G3DSA:3.40.50.300 142 317 1.2E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 SUPERFAMILY SSF52540 144 389 1.31E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13140 e927028674540fbbbb9e5c2a1bd281db 513 SMART SM00382 165 309 1.6E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 201 221 6.4E-42 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 233 247 6.4E-42 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 298 325 6.4E-42 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 265 279 6.4E-42 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 465 484 6.4E-42 T 06-07-2017 IPR020591 Chromosomal replication control, initiator DnaA-like CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 SMART SM00760 415 484 8.6E-41 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Pfam PF11638 DnaA N-terminal domain 32 93 3.4E-19 T 06-07-2017 IPR024633 DnaA N-terminal domain CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 SUPERFAMILY SSF52540 166 383 1.08E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 ProSitePatterns PS01008 DnaA protein signature. 465 484 - T 06-07-2017 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 31 506 29.122 T 06-07-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Gene3D G3DSA:1.10.1750.10 407 506 4.7E-40 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Gene3D G3DSA:3.40.50.300 158 329 7.4E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Gene3D G3DSA:1.10.8.60 333 406 4.0E-11 T 06-07-2017 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Pfam PF00308 Bacterial dnaA protein 166 389 3.8E-88 T 06-07-2017 IPR013317 Chromosomal replication initiator protein DnaA CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 SUPERFAMILY SSF48295 405 506 2.09E-36 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 SMART SM00382 200 328 2.1E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 35 504 4.5E-147 T 06-07-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CDO28_RS08705 340d54d9af33450341512b86c0f60b52 507 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 416 484 4.4E-31 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 Gene3D G3DSA:3.30.1390.20 8 65 1.4E-26 T 06-07-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 Pfam PF00327 Ribosomal protein L30p/L7e 13 61 5.4E-14 T 06-07-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 7 65 16.872 T 06-07-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 PIRSF PIRSF002211 1 67 3.5E-22 T 06-07-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 11 65 7.8E-24 T 06-07-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 CDO28_RS03540 9db56cb0d7ca9f101787064e5dbb0e17 67 SUPERFAMILY SSF55129 9 63 1.14E-17 T 06-07-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CDO28_RS04160 fe8c2be80068e8e8c1cac58173089a9e 132 Gene3D G3DSA:2.60.120.10 9 130 1.1E-35 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS04160 fe8c2be80068e8e8c1cac58173089a9e 132 SUPERFAMILY SSF51182 9 130 8.89E-34 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS04160 fe8c2be80068e8e8c1cac58173089a9e 132 Pfam PF07883 Cupin domain 41 104 9.5E-13 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Pfam PF02779 Transketolase, pyrimidine binding domain 357 528 2.9E-46 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Gene3D G3DSA:3.40.50.970 7 324 5.9E-117 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 SUPERFAMILY SSF52922 538 668 1.57E-39 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Gene3D G3DSA:3.40.50.970 353 534 4.8E-72 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 SMART SM00861 358 529 2.4E-64 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Pfam PF02780 Transketolase, C-terminal domain 551 658 1.5E-11 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 SUPERFAMILY SSF52518 355 531 5.54E-66 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Gene3D G3DSA:3.40.50.920 543 667 2.9E-44 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 15 339 2.4E-132 T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 ProSitePatterns PS00802 Transketolase signature 2. 471 487 - T 06-07-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 ProSitePatterns PS00801 Transketolase signature 1. 23 43 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 SUPERFAMILY SSF52518 13 321 1.82E-109 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31575 ee50243c6381f2c01262afdad703c5e1 694 TIGRFAM TIGR00232 tktlase_bact: transketolase 17 665 7.6E-241 T 06-07-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 Pfam PF01145 SPFH domain / Band 7 family 28 196 6.7E-33 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 SMART SM00244 23 180 5.1E-60 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 SUPERFAMILY SSF117892 54 187 1.96E-41 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 156 174 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 132 155 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 30 52 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 200 223 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 175 196 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 77 98 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS28325 8c635b9302c8c1bb46ee9136d03f3886 259 PRINTS PR00721 Stomatin signature 112 129 8.3E-62 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 SUPERFAMILY SSF56003 129 749 5.5E-172 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 166 689 7.9E-130 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 461 616 3.9E-30 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 126 191 4.2E-26 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 299 370 4.2E-26 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 192 296 1.7E-34 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.90.1170.50 8 125 1.1E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 SUPERFAMILY SSF54665 11 156 2.88E-41 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 29 136 4.2E-28 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 617 749 6.4E-58 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 Gene3D G3DSA:3.30.365.10 374 455 6.4E-58 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS19475 7251981234dc4e2e84035d9546394e37 750 SMART SM01008 29 137 5.5E-39 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS10020 9624e8ce535d0d06392210d280d231bf 318 SUPERFAMILY SSF161098 78 304 6.15E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10020 9624e8ce535d0d06392210d280d231bf 318 Gene3D G3DSA:1.10.3720.10 85 308 2.3E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10020 9624e8ce535d0d06392210d280d231bf 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 305 6.4E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20410 7b41d240b5f9cc8d2b259b8846107bce 258 Pfam PF13427 Domain of unknown function (DUF4111) 152 252 1.4E-23 T 06-07-2017 IPR025184 Domain of unknown function DUF4111 CDO28_RS20410 7b41d240b5f9cc8d2b259b8846107bce 258 Pfam PF01909 Nucleotidyltransferase domain 19 76 2.5E-6 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CDO28_RS20410 7b41d240b5f9cc8d2b259b8846107bce 258 PIRSF PIRSF000819 6 257 6.6E-71 T 06-07-2017 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 CDO28_RS20410 7b41d240b5f9cc8d2b259b8846107bce 258 SUPERFAMILY SSF81301 13 76 1.59E-10 T 06-07-2017 CDO28_RS20410 7b41d240b5f9cc8d2b259b8846107bce 258 Gene3D G3DSA:3.30.460.10 15 74 7.7E-11 T 06-07-2017 CDO28_RS07360 4eef685bcda8c22d476e14fef06654ad 259 Gene3D G3DSA:1.10.3700.10 2 225 4.4E-93 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS07360 4eef685bcda8c22d476e14fef06654ad 259 Pfam PF06748 Protein of unknown function (DUF1217) 61 209 7.2E-58 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS07360 4eef685bcda8c22d476e14fef06654ad 259 SUPERFAMILY SSF158837 2 224 2.88E-81 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 Pfam PF07719 Tetratricopeptide repeat 248 281 1.6E-6 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 Pfam PF00515 Tetratricopeptide repeat 79 111 1.0E-6 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 Gene3D G3DSA:1.25.40.10 61 292 2.1E-64 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 214 247 0.061 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 180 213 2.7E-7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 112 145 3.1E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 78 111 3.1E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 248 281 5.0E-6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SMART SM00028 146 179 0.0041 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 Pfam PF13181 Tetratricopeptide repeat 112 145 1.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 Pfam PF13414 TPR repeat 153 191 3.2E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12825 db9de6a7014f4bf48d1c509e5f273fd1 295 SUPERFAMILY SSF48439 57 279 8.63E-46 T 06-07-2017 CDO28_RS31665 ff858806b6f58145014f992429084832 454 SUPERFAMILY SSF55874 298 439 3.41E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31665 ff858806b6f58145014f992429084832 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 437 5.1E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31665 ff858806b6f58145014f992429084832 454 Gene3D G3DSA:1.10.287.130 225 280 3.4E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31665 ff858806b6f58145014f992429084832 454 SMART SM00387 333 443 7.9E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31665 ff858806b6f58145014f992429084832 454 Pfam PF00672 HAMP domain 165 230 3.7E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS31665 ff858806b6f58145014f992429084832 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 1.1E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31665 ff858806b6f58145014f992429084832 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 1.1E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31665 ff858806b6f58145014f992429084832 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 1.1E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31665 ff858806b6f58145014f992429084832 454 SUPERFAMILY SSF47384 219 289 3.14E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31665 ff858806b6f58145014f992429084832 454 SMART SM00304 182 234 3.9E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS31665 ff858806b6f58145014f992429084832 454 SMART SM00388 235 293 0.0011 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31665 ff858806b6f58145014f992429084832 454 Gene3D G3DSA:3.30.565.10 281 440 7.9E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07560 a94a9d2358fcdeac268a21121271c74a 138 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 116 1.1E-21 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system CDO28_RS07560 a94a9d2358fcdeac268a21121271c74a 138 SUPERFAMILY SSF143100 3 52 3.4E-12 T 06-07-2017 CDO28_RS30450 ff1d92222f240b2975046c563cf1a178 413 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 150 396 7.8E-23 T 06-07-2017 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 CDO28_RS30450 ff1d92222f240b2975046c563cf1a178 413 Gene3D G3DSA:3.40.50.720 3 199 8.3E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30450 ff1d92222f240b2975046c563cf1a178 413 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 5 146 2.0E-33 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 CDO28_RS30450 ff1d92222f240b2975046c563cf1a178 413 SUPERFAMILY SSF51735 2 160 3.69E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14615 8aebd5dca1ce9761958f5cb185f51539 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 306 1.1E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14615 8aebd5dca1ce9761958f5cb185f51539 311 Gene3D G3DSA:1.10.3720.10 76 301 6.3E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14615 8aebd5dca1ce9761958f5cb185f51539 311 SUPERFAMILY SSF161098 70 298 1.96E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 Pfam PF01381 Helix-turn-helix 9 63 3.9E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 SMART SM00530 8 63 2.1E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 SUPERFAMILY SSF51182 59 182 7.13E-26 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 Gene3D G3DSA:2.60.120.10 89 182 8.5E-20 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 Gene3D G3DSA:1.10.260.40 3 70 2.0E-22 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 Pfam PF07883 Cupin domain 109 175 5.7E-19 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS10895 20a5cfbd86c6974d485de49b065bf7e1 182 SUPERFAMILY SSF47413 3 69 2.17E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 Gene3D G3DSA:3.40.50.720 7 201 1.3E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 PIRSF PIRSF000094 2 260 1.6E-118 T 06-07-2017 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 1.1E-86 T 06-07-2017 CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 5.0E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 5.0E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 5.0E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.0E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09355 5a95f957d8703ff3305557592df96e75 268 SUPERFAMILY SSF51735 6 254 3.52E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 Gene3D G3DSA:3.50.50.60 148 334 2.4E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 Gene3D G3DSA:3.50.50.60 2 147 8.3E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 Gene3D G3DSA:3.30.390.30 339 460 9.6E-29 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 SUPERFAMILY SSF51905 1 340 5.0E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 SUPERFAMILY SSF55424 344 461 4.81E-30 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PIRSF PIRSF000350 1 460 4.5E-69 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 2.7E-50 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 451 5.4E-26 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 3.5E-26 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 3.5E-26 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.5E-26 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 3.5E-26 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 3.5E-26 T 06-07-2017 CDO28_RS00635 9e9f059b2a87dbb3dc8d04a13609cb51 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 326 7.1E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS03160 1671cfbc993a0d28359e204311aa96e6 348 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 34 347 2.3E-158 T 06-07-2017 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CDO28_RS03160 1671cfbc993a0d28359e204311aa96e6 348 Pfam PF00676 Dehydrogenase E1 component 42 339 7.1E-111 T 06-07-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 CDO28_RS03160 1671cfbc993a0d28359e204311aa96e6 348 Gene3D G3DSA:3.40.50.970 27 346 1.4E-142 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS03160 1671cfbc993a0d28359e204311aa96e6 348 SUPERFAMILY SSF52518 29 347 1.64E-111 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS24505 b88765be4a8e48748f75f314ddba650b 305 Gene3D G3DSA:1.10.3720.10 87 287 6.2E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24505 b88765be4a8e48748f75f314ddba650b 305 SUPERFAMILY SSF161098 88 276 9.03E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24505 b88765be4a8e48748f75f314ddba650b 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 291 2.3E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23325 3be3e11bbda675d08dd0966419ef966a 639 SUPERFAMILY SSF52540 191 627 4.35E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23325 3be3e11bbda675d08dd0966419ef966a 639 TIGRFAM TIGR02767 TraG-Ti: Ti-type conjugative transfer system protein TraG 10 634 0.0 T 06-07-2017 IPR014135 Ti-type conjugative transfer system, TraG CDO28_RS23325 3be3e11bbda675d08dd0966419ef966a 639 Gene3D G3DSA:3.40.50.300 424 627 9.0E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23325 3be3e11bbda675d08dd0966419ef966a 639 Gene3D G3DSA:3.40.50.300 142 288 9.0E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23325 3be3e11bbda675d08dd0966419ef966a 639 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 169 635 7.2E-96 T 06-07-2017 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 CDO28_RS23760 dded079caa2a69fd3089f9a73b5e406b 354 Gene3D G3DSA:2.120.10.30 27 353 5.1E-71 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS23760 dded079caa2a69fd3089f9a73b5e406b 354 Pfam PF07995 Glucose / Sorbosone dehydrogenase 47 335 3.0E-60 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS23760 dded079caa2a69fd3089f9a73b5e406b 354 SUPERFAMILY SSF50952 22 315 3.14E-36 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 Gene3D G3DSA:2.30.40.10 508 571 1.9E-4 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 SUPERFAMILY SSF51338 34 98 1.73E-25 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 SUPERFAMILY SSF51338 529 575 1.73E-25 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 Gene3D G3DSA:2.30.40.10 33 128 2.8E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 SUPERFAMILY SSF51556 97 159 2.62E-43 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 SUPERFAMILY SSF51556 239 530 2.62E-43 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 Gene3D G3DSA:3.20.20.140 242 507 1.5E-18 T 06-07-2017 CDO28_RS25565 0c576cc4e7e0994260fe61e5e6fefb0e 661 Pfam PF07969 Amidohydrolase family 86 570 7.0E-120 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS15235 dd7889b56f24e3f0f80d03cdac2a4af9 638 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 308 438 4.1E-10 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS15235 dd7889b56f24e3f0f80d03cdac2a4af9 638 Gene3D G3DSA:3.40.50.300 263 459 4.3E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15235 dd7889b56f24e3f0f80d03cdac2a4af9 638 SUPERFAMILY SSF52540 308 525 1.24E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF00989 PAS fold 278 382 2.8E-14 T 06-07-2017 IPR013767 PAS fold GO:0006355 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 610 679 300.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 531 597 7.1E-11 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 405 474 0.0023 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 278 344 7.8E-12 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 155 222 4.4E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00091 22 92 65.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF08448 PAS fold 411 524 8.0E-8 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF08448 PAS fold 28 145 6.5E-10 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF08448 PAS fold 161 267 1.3E-7 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00086 351 393 0.033 T 06-07-2017 IPR001610 PAC motif CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00086 101 143 0.052 T 06-07-2017 IPR001610 PAC motif CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00086 603 645 1.0E-5 T 06-07-2017 IPR001610 PAC motif CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00086 225 266 1.9 T 06-07-2017 IPR001610 PAC motif CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 77 149 4.8E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 274 396 1.0E-21 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 155 271 3.1E-12 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 401 528 2.9E-11 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 530 650 2.5E-32 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55785 29 143 2.97E-14 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Gene3D G3DSA:3.30.450.20 415 521 1.6E-14 T 06-07-2017 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF13426 PAS domain 542 644 5.1E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55785 263 391 1.37E-25 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55874 740 843 9.63E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55785 140 264 4.19E-18 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Gene3D G3DSA:3.30.450.20 141 264 2.3E-17 T 06-07-2017 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Gene3D G3DSA:3.30.450.20 277 414 2.9E-26 T 06-07-2017 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55785 389 514 6.98E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SUPERFAMILY SSF55785 542 650 2.54E-29 T 06-07-2017 IPR000014 PAS domain CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Gene3D G3DSA:3.30.450.20 26 140 2.4E-17 T 06-07-2017 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Gene3D G3DSA:3.30.450.20 531 659 2.8E-29 T 06-07-2017 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 Pfam PF07536 HWE histidine kinase 658 738 1.1E-26 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS21000 00d6ef6eaf3825c359dec56f834cf56a 844 SMART SM00911 658 739 1.0E-33 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 SUPERFAMILY SSF53686 3 327 2.23E-92 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 Gene3D G3DSA:3.40.50.1100 3 42 3.7E-64 T 06-07-2017 CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 Gene3D G3DSA:3.40.50.1100 157 323 3.7E-64 T 06-07-2017 CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 06-07-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 Gene3D G3DSA:3.40.50.1100 43 150 1.2E-35 T 06-07-2017 CDO28_RS01740 75ccc02310c5b87f83e916310348beba 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 306 3.3E-68 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.70.1430 563 653 5.1E-5 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82693 41 133 1.05E-24 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.70.1320 139 178 9.3E-12 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.70.1320 269 298 9.3E-12 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.2090.10 707 802 2.0E-10 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Pfam PF00873 AcrB/AcrD/AcrF family 4 1015 1.2E-256 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:1.20.1640.10 299 497 7.1E-56 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82866 801 1019 1.57E-44 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.70.1430 41 138 3.2E-28 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82693 267 324 2.09E-14 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82693 138 181 2.09E-14 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82714 182 262 2.35E-15 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82714 707 798 1.83E-9 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82693 562 656 8.63E-10 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 2.4E-64 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:3.30.2090.10 182 261 5.5E-15 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 SUPERFAMILY SSF82866 289 489 1.96E-45 T 06-07-2017 CDO28_RS23185 c541b28e184be7e2f8d07e5ae66b5797 1065 Gene3D G3DSA:1.10.3850.10 805 1018 3.6E-56 T 06-07-2017 CDO28_RS07530 d3e51f9b4775d3b8f718730c75ac09c5 153 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 3.6E-25 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS07530 d3e51f9b4775d3b8f718730c75ac09c5 153 Gene3D G3DSA:3.90.960.10 2 151 1.2E-46 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS07530 d3e51f9b4775d3b8f718730c75ac09c5 153 SUPERFAMILY SSF55826 5 150 2.49E-39 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 Gene3D G3DSA:1.10.357.10 74 216 1.8E-36 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 5.5E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 5.5E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 SUPERFAMILY SSF48498 93 218 3.89E-38 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 SUPERFAMILY SSF46689 14 90 2.21E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 3.0E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24485 27b31ea63beed05516aff8d6a19e513f 219 Gene3D G3DSA:1.10.10.60 14 73 2.1E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 369 3.7E-158 T 06-07-2017 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 06-07-2017 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 SUPERFAMILY SSF52283 305 359 2.98E-66 T 06-07-2017 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 SUPERFAMILY SSF52283 1 137 2.98E-66 T 06-07-2017 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 Gene3D G3DSA:3.40.50.1770 199 358 9.7E-29 T 06-07-2017 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 PIRSF PIRSF000183 1 370 7.2E-155 T 06-07-2017 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 Gene3D G3DSA:3.40.50.1770 1 175 5.1E-59 T 06-07-2017 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 SMART SM01002 149 297 1.5E-92 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 SUPERFAMILY SSF51735 137 303 1.08E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 2.0E-47 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 351 5.5E-84 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 Gene3D G3DSA:3.50.50.60 176 198 1.4E-8 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS01715 ba634d490b326baeb41534a636bc4db8 372 SMART SM01003 4 137 1.7E-79 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDO28_RS20530 b043f3a68ec03a577508cdaa33399035 175 SUPERFAMILY SSF54427 43 164 1.22E-25 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS20530 b043f3a68ec03a577508cdaa33399035 175 Gene3D G3DSA:3.10.450.50 41 167 3.0E-23 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS20530 b043f3a68ec03a577508cdaa33399035 175 Pfam PF12680 SnoaL-like domain 61 153 9.1E-11 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 313 2.5E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 297 2.5E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 Pfam PF12833 Helix-turn-helix domain 236 314 4.4E-21 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 SMART SM00342 230 313 1.1E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 Pfam PF12852 Cupin 15 198 9.4E-46 T 06-07-2017 IPR032783 AraC-type transcription regulator, ligand-binding domain CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 SUPERFAMILY SSF46689 266 315 4.93E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 Gene3D G3DSA:1.10.10.60 268 315 7.8E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 Gene3D G3DSA:2.60.120.10 52 100 3.8E-5 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 SUPERFAMILY SSF46689 214 264 8.6E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 309 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 Gene3D G3DSA:1.10.10.60 212 267 8.2E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30400 773091cafdbaf97041e5872859e57106 328 SUPERFAMILY SSF51182 50 116 1.21E-5 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 Pfam PF01467 Cytidylyltransferase-like 5 138 3.2E-13 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 161 1.8E-53 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 163 32.208 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 2.4E-24 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 2.4E-24 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 2.4E-24 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 2.4E-24 T 06-07-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 Gene3D G3DSA:3.40.50.620 1 162 2.0E-46 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 59 5.5E-13 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDO28_RS02265 3813ae83d7e102f041b808812a6a7bc1 163 SUPERFAMILY SSF52374 1 161 1.66E-36 T 06-07-2017 CDO28_RS21390 fced11d9aece6e9e70e2b79a0b1bad2b 327 Gene3D G3DSA:3.40.50.720 1 190 4.0E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21390 fced11d9aece6e9e70e2b79a0b1bad2b 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 207 1.5E-18 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS21390 fced11d9aece6e9e70e2b79a0b1bad2b 327 Gene3D G3DSA:3.90.25.10 191 304 2.2E-37 T 06-07-2017 CDO28_RS21390 fced11d9aece6e9e70e2b79a0b1bad2b 327 SUPERFAMILY SSF51735 1 321 7.63E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 SMART SM00895 84 206 8.7E-14 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 Gene3D G3DSA:1.10.10.10 5 73 6.6E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 SUPERFAMILY SSF48008 82 205 4.45E-21 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 SMART SM00345 16 74 4.6E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 Pfam PF07729 FCD domain 84 202 3.0E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 68 1.5E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 SUPERFAMILY SSF46785 9 98 3.46E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25390 a509d3901b49f92be8235d4676bc4650 226 Gene3D G3DSA:1.20.120.530 77 216 9.2E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS13210 281eea14753341092561702404d14d50 260 Pfam PF01925 Sulfite exporter TauE/SafE 13 247 1.4E-28 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS02400 b1d0a71ec0ed8f06df5f6340b66c3fb0 174 Gene3D G3DSA:2.40.50.140 2 174 1.9E-50 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS02400 b1d0a71ec0ed8f06df5f6340b66c3fb0 174 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 174 7.5E-49 T 06-07-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CDO28_RS02400 b1d0a71ec0ed8f06df5f6340b66c3fb0 174 SUPERFAMILY SSF50249 4 174 8.23E-51 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS02400 b1d0a71ec0ed8f06df5f6340b66c3fb0 174 Pfam PF00436 Single-strand binding protein family 5 105 4.9E-39 T 06-07-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CDO28_RS02400 b1d0a71ec0ed8f06df5f6340b66c3fb0 174 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 35.787 T 06-07-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 SUPERFAMILY SSF54373 246 310 1.86E-20 T 06-07-2017 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 Pfam PF03275 UDP-galactopyranose mutase 147 343 4.7E-78 T 06-07-2017 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 Gene3D G3DSA:3.40.50.720 318 361 3.1E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 Gene3D G3DSA:3.40.50.720 182 255 3.1E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 Gene3D G3DSA:3.40.50.720 1 80 3.1E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 SUPERFAMILY SSF51971 1 263 3.12E-52 T 06-07-2017 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 SUPERFAMILY SSF51971 328 364 3.12E-52 T 06-07-2017 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 1 360 1.9E-118 T 06-07-2017 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDO28_RS33480 c8dd4e690fcff8f3f2978ba099cbf370 368 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 71 5.9E-15 T 06-07-2017 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 SUPERFAMILY SSF63380 276 370 1.51E-25 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 SUPERFAMILY SSF50022 7 116 1.07E-25 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Pfam PF00355 Rieske [2Fe-2S] domain 9 90 1.0E-13 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 SUPERFAMILY SSF52343 363 489 5.11E-23 T 06-07-2017 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 537 545 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Gene3D G3DSA:3.40.50.80 372 486 1.4E-23 T 06-07-2017 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 346 360 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 360 374 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 382 401 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 407 416 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 300 310 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 310 322 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 459 467 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 PRINTS PR00409 Phthalate dioxygenase reductase family signature 322 336 5.1E-42 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 512 579 9.9E-14 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Gene3D G3DSA:2.102.10.10 8 120 3.0E-24 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Gene3D G3DSA:3.10.20.30 487 586 4.6E-27 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 Gene3D G3DSA:2.40.30.10 273 371 3.2E-31 T 06-07-2017 CDO28_RS24670 5c793f0d6986334ab859f28745491545 588 SUPERFAMILY SSF54292 481 586 1.31E-28 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 37 55 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 82 100 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 278 296 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 281 297 0.35 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 174 190 0.0023 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 104 117 0.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 156 172 7.0E-4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 18 30 2.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 192 208 0.18 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 263 280 0.0039 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 218 234 0.0089 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 32 48 0.013 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 77 93 0.027 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 122 136 0.64 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 58 75 0.044 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 236 253 0.014 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 SUPERFAMILY SSF51120 168 352 3.66E-33 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 28 46 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 73 91 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Gene3D G3DSA:2.150.10.10 4 139 2.3E-30 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Gene3D G3DSA:2.150.10.10 151 226 1.2E-19 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 Gene3D G3DSA:2.150.10.10 227 360 2.4E-29 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 PRINTS PR00313 NodO calcium binding signature 201 210 2.5E-9 T 06-07-2017 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 PRINTS PR00313 NodO calcium binding signature 74 85 2.5E-9 T 06-07-2017 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 PRINTS PR00313 NodO calcium binding signature 156 164 2.5E-9 T 06-07-2017 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 PRINTS PR00313 NodO calcium binding signature 86 94 2.5E-9 T 06-07-2017 CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 91 109 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 242 260 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS26430 5305a180f08ae8a237f4baffed4c7ea0 387 SUPERFAMILY SSF51120 10 139 5.13E-22 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Pfam PF00512 His Kinase A (phospho-acceptor) domain 510 576 4.7E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SMART SM00388 507 579 2.9E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 621 738 9.4E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 PIRSF PIRSF037532 11 744 8.1E-246 T 06-07-2017 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SUPERFAMILY SSF47384 503 577 2.35E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SMART SM00304 324 377 8.7E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SUPERFAMILY SSF158472 325 374 5.23E-9 T 06-07-2017 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SUPERFAMILY SSF55785 382 497 9.33E-10 T 06-07-2017 IPR000014 PAS domain CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Pfam PF00672 HAMP domain 307 373 5.0E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 PRINTS PR00344 Bacterial sensor protein C-terminal signature 666 680 9.6E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 694 9.6E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 713 9.6E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 PRINTS PR00344 Bacterial sensor protein C-terminal signature 724 737 9.6E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Gene3D G3DSA:3.30.450.20 387 497 2.3E-12 T 06-07-2017 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SUPERFAMILY SSF55874 581 737 1.44E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Gene3D G3DSA:1.10.287.130 503 575 6.8E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 SMART SM00387 619 740 2.2E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03085 cfcd6ce8fbd6f683b7a56808b52b4268 757 Gene3D G3DSA:3.30.565.10 580 737 4.0E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 147 162 - T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 Gene3D G3DSA:3.40.50.150 36 221 4.8E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 SUPERFAMILY SSF53335 35 207 2.55E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 35 217 1.4E-55 T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 36 218 9.2E-56 T 06-07-2017 CDO28_RS24800 95ec44873c0a802dcf9dd1f5001eebd3 223 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 14 223 33.004 T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS25940 59ac5d21fe6798c8cbe02edf949fad4d 151 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 28 78 5.1E-15 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS25940 59ac5d21fe6798c8cbe02edf949fad4d 151 SUPERFAMILY SSF69118 6 145 6.62E-42 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS25940 59ac5d21fe6798c8cbe02edf949fad4d 151 Pfam PF02627 Carboxymuconolactone decarboxylase family 16 95 1.9E-16 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS25940 59ac5d21fe6798c8cbe02edf949fad4d 151 Gene3D G3DSA:1.20.1290.10 3 146 3.2E-49 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 Gene3D G3DSA:3.40.190.10 186 270 1.3E-24 T 06-07-2017 CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 1.4E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 Gene3D G3DSA:3.40.190.10 94 185 8.0E-24 T 06-07-2017 CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 SUPERFAMILY SSF53850 94 296 5.79E-36 T 06-07-2017 CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 SUPERFAMILY SSF46785 8 89 6.42E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 Gene3D G3DSA:1.10.10.10 4 89 5.1E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24995 a9e93131d13bc114ec71f785b9da7473 307 Pfam PF03466 LysR substrate binding domain 98 298 1.1E-23 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Gene3D G3DSA:1.20.272.10 265 382 4.1E-22 T 06-07-2017 CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Gene3D G3DSA:1.10.8.60 189 264 7.6E-30 T 06-07-2017 CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Gene3D G3DSA:3.40.50.300 36 188 2.7E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 20 380 6.6E-122 T 06-07-2017 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 255 396 3.9E-51 T 06-07-2017 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 SMART SM00382 55 201 1.6E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 SUPERFAMILY SSF52540 50 243 2.04E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 483 595 2.5E-37 T 06-07-2017 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 Pfam PF13177 DNA polymerase III, delta subunit 38 200 8.1E-34 T 06-07-2017 CDO28_RS09435 da84dea0fc3c3becc7611304c24d1d54 626 SUPERFAMILY SSF48019 265 391 1.79E-29 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 217 3.0E-25 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Gene3D G3DSA:1.10.540.10 2 119 4.1E-41 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 378 4.8E-47 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 118 5.0E-30 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 SUPERFAMILY SSF56645 2 242 6.81E-81 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Gene3D G3DSA:1.20.140.10 220 381 5.9E-64 T 06-07-2017 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 Gene3D G3DSA:2.40.110.10 123 219 1.3E-38 T 06-07-2017 CDO28_RS29990 a13ba003da13e04267ab1d714c87ec57 382 SUPERFAMILY SSF47203 228 381 1.61E-55 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 SUPERFAMILY SSF46785 18 88 1.32E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 SUPERFAMILY SSF53383 106 463 5.17E-68 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 Gene3D G3DSA:1.10.10.10 18 85 8.9E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 SMART SM00345 25 84 4.9E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 Pfam PF00155 Aminotransferase class I and II 142 456 1.5E-20 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 Gene3D G3DSA:3.40.640.10 139 358 1.7E-57 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS16865 9fca085bc3b6ebf8264c9dc7f1ec2a94 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 84 1.4E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 Gene3D G3DSA:2.60.120.200 218 459 9.8E-60 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 PRINTS PR00313 NodO calcium binding signature 31 42 2.0E-7 T 06-07-2017 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 PRINTS PR00313 NodO calcium binding signature 53 61 2.0E-7 T 06-07-2017 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 PRINTS PR00313 NodO calcium binding signature 124 132 2.0E-7 T 06-07-2017 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 PRINTS PR00313 NodO calcium binding signature 133 142 2.0E-7 T 06-07-2017 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 SUPERFAMILY SSF51120 11 219 1.7E-24 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 Pfam PF00722 Glycosyl hydrolases family 16 267 454 1.1E-31 T 06-07-2017 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 SUPERFAMILY SSF49899 211 459 6.63E-54 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 Gene3D G3DSA:2.150.10.10 105 217 2.4E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS24915 650692b49375bde1d413c3df8f207d96 465 Gene3D G3DSA:2.150.10.10 15 82 1.5E-4 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 186 304 8.6E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 Pfam PF07536 HWE histidine kinase 315 396 1.4E-27 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 SUPERFAMILY SSF55785 177 300 1.73E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 SUPERFAMILY SSF55874 389 501 1.87E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 SUPERFAMILY SSF55781 36 168 3.88E-15 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 Gene3D G3DSA:3.30.450.20 181 300 1.9E-20 T 06-07-2017 CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 Pfam PF08447 PAS fold 215 294 7.8E-9 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 SMART SM00091 189 256 9.4E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 Gene3D G3DSA:3.30.450.40 36 179 1.7E-9 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS15040 d00d19083c65ec02331a662f12eced6f 501 SMART SM00911 315 397 1.5E-33 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 5 256 2.1E-123 T 06-07-2017 IPR012700 Phosphonate C-P lyase system, PhnK CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 Gene3D G3DSA:3.40.50.300 5 253 4.9E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 PIRSF PIRSF037116 1 258 6.0E-146 T 06-07-2017 IPR012700 Phosphonate C-P lyase system, PhnK CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 Pfam PF00005 ABC transporter 23 179 1.3E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 SMART SM00382 31 229 6.5E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30040 7cb8535f3eb28152d426d77694088ba8 258 SUPERFAMILY SSF52540 5 254 8.15E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 SUPERFAMILY SSF56601 404 738 2.29E-101 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 SUPERFAMILY SSF56601 354 376 2.29E-101 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 Pfam PF07886 BA14K-like protein 752 780 2.7E-10 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 Gene3D G3DSA:3.40.710.10 375 739 3.0E-99 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 Gene3D G3DSA:1.10.3810.10 205 374 8.2E-65 T 06-07-2017 CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 Pfam PF00912 Transglycosylase 208 372 1.3E-58 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 Pfam PF00905 Penicillin binding protein transpeptidase domain 461 691 8.9E-21 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 SUPERFAMILY SSF53955 189 395 2.17E-67 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS18880 2e9bf4ea9bbb3e7e90ccee154858ce3f 781 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 210 726 3.9E-176 T 06-07-2017 CDO28_RS19635 8cde4b37ddf546e072cd39e8cbb766a7 136 Gene3D G3DSA:2.20.25.10 3 44 3.8E-19 T 06-07-2017 CDO28_RS19635 8cde4b37ddf546e072cd39e8cbb766a7 136 SUPERFAMILY SSF82784 3 133 1.96E-40 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS19635 8cde4b37ddf546e072cd39e8cbb766a7 136 Gene3D G3DSA:3.30.300.20 45 134 8.1E-31 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS19635 8cde4b37ddf546e072cd39e8cbb766a7 136 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 6 133 1.4E-47 T 06-07-2017 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CDO28_RS19635 8cde4b37ddf546e072cd39e8cbb766a7 136 Pfam PF02566 OsmC-like protein 37 130 1.7E-17 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 216 446 2.6E-80 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 SUPERFAMILY SSF47005 136 180 1.12E-12 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 447 2.3E-191 T 06-07-2017 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Pfam PF02817 e3 binding domain 141 176 1.1E-16 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Pfam PF00364 Biotin-requiring enzyme 4 77 4.8E-22 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 SUPERFAMILY SSF51230 1 93 1.83E-28 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Gene3D G3DSA:2.40.50.100 2 91 7.1E-33 T 06-07-2017 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Gene3D G3DSA:4.10.320.10 137 187 1.7E-20 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 SUPERFAMILY SSF52777 215 446 3.83E-79 T 06-07-2017 CDO28_RS03150 fabf76b29b0c9cae34167b3240695f45 447 Gene3D G3DSA:3.30.559.10 215 446 2.0E-89 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 CDO28_RS14510 55d7d642dc986d9ed725c3cae20eb3fa 344 Gene3D G3DSA:3.40.50.2300 52 173 2.5E-13 T 06-07-2017 CDO28_RS14510 55d7d642dc986d9ed725c3cae20eb3fa 344 Pfam PF13407 Periplasmic binding protein domain 52 313 1.5E-36 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS14510 55d7d642dc986d9ed725c3cae20eb3fa 344 Gene3D G3DSA:3.40.50.2300 174 324 3.7E-13 T 06-07-2017 CDO28_RS14510 55d7d642dc986d9ed725c3cae20eb3fa 344 SUPERFAMILY SSF53822 52 336 3.14E-33 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 Gene3D G3DSA:3.90.180.10 1 159 2.0E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 1.2E-20 T 06-07-2017 CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 SMART SM00829 10 334 3.3E-12 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 SUPERFAMILY SSF50129 1 142 2.13E-33 T 06-07-2017 IPR011032 GroES-like CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 4.2E-177 T 06-07-2017 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 Gene3D G3DSA:3.40.50.720 160 247 7.7E-18 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 91 6.8E-7 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS05335 a4cda00ddfa48671ceb1b3dd426db415 337 SUPERFAMILY SSF51735 117 286 8.45E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32180 961f8ec63d5073c69d72e8ec491f4154 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 320 9.5E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32180 961f8ec63d5073c69d72e8ec491f4154 328 SUPERFAMILY SSF161098 90 314 3.14E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32180 961f8ec63d5073c69d72e8ec491f4154 328 Gene3D G3DSA:1.20.58.370 28 60 3.1E-4 T 06-07-2017 CDO28_RS32180 961f8ec63d5073c69d72e8ec491f4154 328 Gene3D G3DSA:1.10.3720.10 93 319 2.9E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14925 5d8464f767c55588f7415786ffdf7498 263 Gene3D G3DSA:3.40.50.300 8 221 1.0E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14925 5d8464f767c55588f7415786ffdf7498 263 Pfam PF00005 ABC transporter 28 169 8.3E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14925 5d8464f767c55588f7415786ffdf7498 263 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14925 5d8464f767c55588f7415786ffdf7498 263 SMART SM00382 37 220 3.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14925 5d8464f767c55588f7415786ffdf7498 263 SUPERFAMILY SSF52540 9 236 6.47E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 Pfam PF00665 Integrase core domain 134 254 1.0E-18 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 Gene3D G3DSA:3.30.420.10 129 292 2.1E-32 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 Pfam PF13565 Homeodomain-like domain 41 112 7.6E-12 T 06-07-2017 CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 Gene3D G3DSA:1.10.10.60 12 60 8.1E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 SUPERFAMILY SSF46689 11 115 5.02E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03050 70a342e7bc4f186b24e2010df5fa3488 390 SUPERFAMILY SSF53098 129 299 4.68E-31 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 Pfam PF00665 Integrase core domain 134 254 1.0E-18 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 Gene3D G3DSA:3.30.420.10 129 292 2.1E-32 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 Pfam PF13565 Homeodomain-like domain 41 112 7.6E-12 T 06-07-2017 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 Gene3D G3DSA:1.10.10.60 12 60 8.1E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 SUPERFAMILY SSF46689 11 115 5.02E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17775 70a342e7bc4f186b24e2010df5fa3488 390 SUPERFAMILY SSF53098 129 299 4.68E-31 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS30750 5b0f0e541e11703872528b309f814543 411 Gene3D G3DSA:2.130.10.10 279 402 9.8E-12 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS30750 5b0f0e541e11703872528b309f814543 411 Gene3D G3DSA:2.130.10.10 38 182 9.8E-12 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS30750 5b0f0e541e11703872528b309f814543 411 SUPERFAMILY SSF50969 38 182 1.73E-14 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like CDO28_RS30750 5b0f0e541e11703872528b309f814543 411 SUPERFAMILY SSF50969 279 402 1.73E-14 T 06-07-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like CDO28_RS04240 419970c7cb893d8d03e2924325d7f09b 142 Gene3D G3DSA:3.40.50.720 12 140 5.4E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04240 419970c7cb893d8d03e2924325d7f09b 142 SMART SM00881 14 111 9.8E-22 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS04240 419970c7cb893d8d03e2924325d7f09b 142 Pfam PF13380 CoA binding domain 19 137 4.6E-38 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS04240 419970c7cb893d8d03e2924325d7f09b 142 SUPERFAMILY SSF51735 8 140 2.81E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 53.132 T 06-07-2017 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 Gene3D G3DSA:3.40.50.300 6 271 2.8E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 1.2E-135 T 06-07-2017 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 SUPERFAMILY SSF52540 5 283 1.27E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 PIRSF PIRSF000363 3 279 5.5E-119 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 2.3E-132 T 06-07-2017 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 PRINTS PR00091 Nitrogenase component II signature 10 23 9.6E-38 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 PRINTS PR00091 Nitrogenase component II signature 87 101 9.6E-38 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 PRINTS PR00091 Nitrogenase component II signature 125 140 9.6E-38 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 PRINTS PR00091 Nitrogenase component II signature 32 47 9.6E-38 T 06-07-2017 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 06-07-2017 IPR030655 NifH/chlL conserved site CDO28_RS23005 e82a9e81ab34017789bbf267049aabfd 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 06-07-2017 IPR030655 NifH/chlL conserved site CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 14 772 0.0 T 06-07-2017 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 28 136 2.2E-31 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 138 171 1.1E-28 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 281 356 1.1E-28 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 SMART SM01008 28 136 7.5E-51 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.90.1170.50 15 136 4.3E-42 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 449 605 1.8E-54 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 SUPERFAMILY SSF54665 14 136 4.19E-41 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 158 700 1.8E-205 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 357 448 4.2E-83 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 615 770 4.2E-83 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 SUPERFAMILY SSF56003 136 771 2.36E-209 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS26700 72932d803220cde1f6152643ebd8b615 777 Gene3D G3DSA:3.30.365.10 172 279 2.1E-34 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 Pfam PF01235 Sodium:alanine symporter family 52 452 1.7E-152 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 348 370 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 178 196 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 409 429 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 87 109 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 206 225 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 PRINTS PR00175 Sodium/alanine symporter signature 302 320 4.1E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS17705 fa7faae9416ce204feace58d1d1469d5 472 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 440 2.5E-148 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 SUPERFAMILY SSF46689 245 291 2.37E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 Pfam PF12833 Helix-turn-helix domain 215 290 1.2E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 SUPERFAMILY SSF46689 193 243 5.28E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 Gene3D G3DSA:1.10.10.60 247 289 1.3E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 SMART SM00342 209 292 4.7E-24 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 Pfam PF06719 AraC-type transcriptional regulator N-terminus 30 180 2.9E-47 T 06-07-2017 IPR009594 Transcription regulator HTH, AraC, N-terminal CDO28_RS13665 cc1cff6ee90f104c91a8573c93e423da 313 Gene3D G3DSA:1.10.10.60 189 246 2.0E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27085 28f39d934440251f1e415a5748a04a91 370 Pfam PF12698 ABC-2 family transporter protein 33 359 7.2E-42 T 06-07-2017 CDO28_RS09555 c27502a00d6086807a1a6070bbef4335 330 Gene3D G3DSA:3.40.50.2300 127 288 1.5E-56 T 06-07-2017 CDO28_RS09555 c27502a00d6086807a1a6070bbef4335 330 Pfam PF02608 Basic membrane protein 34 313 2.7E-55 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS09555 c27502a00d6086807a1a6070bbef4335 330 SUPERFAMILY SSF53822 35 267 1.73E-15 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Gene3D G3DSA:3.40.1170.10 22 147 4.7E-51 T 06-07-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Pfam PF05192 MutS domain III 303 601 9.2E-35 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SUPERFAMILY SSF55271 24 142 8.89E-41 T 06-07-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Pfam PF05188 MutS domain II 155 283 6.9E-30 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Pfam PF00488 MutS domain V 661 848 1.3E-85 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 30 911 9.2E-255 T 06-07-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Pfam PF05190 MutS family domain IV 465 560 2.2E-21 T 06-07-2017 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Pfam PF01624 MutS domain I 30 146 6.9E-44 T 06-07-2017 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Gene3D G3DSA:3.30.420.110 153 286 2.6E-27 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 739 755 - T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SMART SM00533 317 633 6.6E-78 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Gene3D G3DSA:3.40.50.300 609 848 6.5E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SMART SM00534 658 845 7.8E-114 T 06-07-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 PIRSF PIRSF037677 21 892 2.3E-155 T 06-07-2017 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SUPERFAMILY SSF52540 609 849 1.17E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SUPERFAMILY SSF48334 301 608 9.68E-75 T 06-07-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 SUPERFAMILY SSF53150 144 314 3.27E-33 T 06-07-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Gene3D G3DSA:1.10.1420.10 298 504 1.8E-44 T 06-07-2017 CDO28_RS08565 9bc4f0a82c24e74f662a74e8913b2732 916 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 29 905 23.659 T 06-07-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 Pfam PF13410 Glutathione S-transferase, C-terminal domain 207 279 2.1E-14 T 06-07-2017 CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 SUPERFAMILY SSF47616 180 328 2.37E-37 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 162 3.4E-21 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 Gene3D G3DSA:3.40.30.10 39 181 4.5E-18 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 SUPERFAMILY SSF52833 41 99 6.04E-14 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 SUPERFAMILY SSF52833 130 165 6.04E-14 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 PIRSF PIRSF015753 5 328 1.9E-135 T 06-07-2017 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 CDO28_RS15370 5357e0f2c42c5e4a975dd8001ad00d10 330 Gene3D G3DSA:1.20.1050.10 182 294 1.3E-24 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS12845 62ee43f1f4b821c4cf82b8724452366a 113 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 84 1.3E-31 T 06-07-2017 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12845 62ee43f1f4b821c4cf82b8724452366a 113 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 87 5.4E-39 T 06-07-2017 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 124 138 - T 06-07-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 SMART SM00363 25 83 9.4E-6 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 Gene3D G3DSA:3.10.290.10 27 88 3.8E-16 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 90 250 2.0E-45 T 06-07-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 Pfam PF01479 S4 domain 27 66 7.4E-9 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 SUPERFAMILY SSF55120 85 253 2.64E-41 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 Pfam PF00849 RNA pseudouridylate synthase 86 217 5.2E-18 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS30710 8fe2cb478c3e32af76b3e772fc1cde87 262 SUPERFAMILY SSF55174 27 112 3.97E-16 T 06-07-2017 CDO28_RS32865 bccf0669225ac6233846c79be0969ddf 73 Pfam PF14117 Domain of unknown function (DUF4287) 8 64 1.9E-26 T 06-07-2017 IPR025629 Protein of unknown function DUF4287 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 6.3E-54 T 06-07-2017 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 Gene3D G3DSA:1.10.8.50 2 72 4.2E-29 T 06-07-2017 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 06-07-2017 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 8.6E-32 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 PIRSF PIRSF002134 1 122 5.8E-44 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 28.448 T 06-07-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 SUPERFAMILY SSF46946 2 121 5.0E-46 T 06-07-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CDO28_RS03520 7d778bc40ae47648dce30ecfdfa74bb0 122 Gene3D G3DSA:4.10.910.10 73 122 1.9E-29 T 06-07-2017 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 06-07-2017 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 PIRSF PIRSF006092 1 157 1.8E-55 T 06-07-2017 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 Gene3D G3DSA:1.10.287.180 3 76 1.9E-32 T 06-07-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 3.0E-30 T 06-07-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 6 155 5.2E-62 T 06-07-2017 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 156 33.134 T 06-07-2017 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 SUPERFAMILY SSF54534 81 156 1.57E-23 T 06-07-2017 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 SUPERFAMILY SSF46557 4 79 1.26E-26 T 06-07-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 155 7.2E-29 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 06-07-2017 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CDO28_RS02315 25be1f9a99ca0aaa97f5aad55a5319fe 158 Gene3D G3DSA:3.10.50.30 77 156 1.9E-32 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 SMART SM00862 145 220 1.6E-12 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 Pfam PF00072 Response regulator receiver domain 4 111 1.0E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 SUPERFAMILY SSF46894 119 220 6.8E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 Gene3D G3DSA:3.40.50.2300 1 120 1.7E-34 T 06-07-2017 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 SUPERFAMILY SSF52172 1 132 8.4E-35 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 220 1.4E-15 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 Gene3D G3DSA:1.10.10.10 124 221 2.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27115 6600fe0ac4bfe3941b31823dc09c613d 223 SMART SM00448 1 112 2.6E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 9 477 3.4E-211 T 06-07-2017 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 SUPERFAMILY SSF56176 189 368 3.87E-54 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 PIRSF PIRSF036557 6 489 2.1E-195 T 06-07-2017 IPR012175 Xanthine dehydrogenase, small subunit, bacteria CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Gene3D G3DSA:1.10.150.120 90 168 2.5E-35 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Gene3D G3DSA:3.30.390.50 376 478 5.2E-37 T 06-07-2017 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 SUPERFAMILY SSF55447 372 482 8.9E-35 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Gene3D G3DSA:3.30.43.10 206 253 7.5E-23 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Gene3D G3DSA:3.10.20.30 7 89 1.3E-26 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 46 54 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Pfam PF01799 [2Fe-2S] binding domain 88 161 2.2E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 SUPERFAMILY SSF47741 100 211 4.06E-33 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 SUPERFAMILY SSF54292 8 92 2.42E-17 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 204 367 4.7E-51 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Gene3D G3DSA:3.30.465.10 254 367 4.0E-36 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 SMART SM01092 375 477 1.2E-36 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 74 2.7E-4 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS26695 4f1a91a10155606a7cd3b749760322ec 493 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 376 476 3.4E-33 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 Pfam PF03466 LysR substrate binding domain 88 306 1.1E-12 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 SUPERFAMILY SSF53850 88 294 1.47E-14 T 06-07-2017 CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 SUPERFAMILY SSF46785 1 82 2.29E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.8E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 Gene3D G3DSA:1.10.10.10 1 83 1.1E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20950 877065695fb409e2d4d14e50bbc8e294 313 Gene3D G3DSA:3.40.190.10 231 271 4.4E-5 T 06-07-2017 CDO28_RS09345 ead7a373b2d0335f824bf8acf64c4c0b 171 SUPERFAMILY SSF54637 4 169 8.29E-54 T 06-07-2017 IPR029069 HotDog domain CDO28_RS09345 ead7a373b2d0335f824bf8acf64c4c0b 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 171 49.053 T 06-07-2017 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS09345 ead7a373b2d0335f824bf8acf64c4c0b 171 Pfam PF07977 FabA-like domain 29 158 4.2E-48 T 06-07-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS09345 ead7a373b2d0335f824bf8acf64c4c0b 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 169 4.3E-91 T 06-07-2017 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS09345 ead7a373b2d0335f824bf8acf64c4c0b 171 Gene3D G3DSA:3.10.129.10 2 168 1.7E-53 T 06-07-2017 IPR029069 HotDog domain CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 SUPERFAMILY SSF46785 5 89 1.01E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 Gene3D G3DSA:1.10.10.10 4 85 3.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.4E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 Pfam PF03466 LysR substrate binding domain 90 294 6.7E-39 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 SUPERFAMILY SSF53850 92 298 4.71E-42 T 06-07-2017 CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 Gene3D G3DSA:3.40.190.10 94 179 7.4E-17 T 06-07-2017 CDO28_RS25015 de83666b0d94cbcf948894f92474158a 301 Gene3D G3DSA:3.40.190.10 180 264 9.9E-17 T 06-07-2017 CDO28_RS18955 fa6401a5a990fd1692faff9c8001bb72 183 Gene3D G3DSA:3.40.190.10 67 150 2.5E-16 T 06-07-2017 CDO28_RS18955 fa6401a5a990fd1692faff9c8001bb72 183 SUPERFAMILY SSF53850 66 179 1.77E-20 T 06-07-2017 CDO28_RS18955 fa6401a5a990fd1692faff9c8001bb72 183 Pfam PF03466 LysR substrate binding domain 67 179 1.0E-19 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 94 20.87 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 Gene3D G3DSA:3.30.1310.10 1 107 1.4E-39 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 SUPERFAMILY SSF82607 8 101 3.4E-29 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 1.0E-30 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 PIRSF PIRSF004555 1 107 4.0E-32 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS09430 77e5fb2b0ab12f6667b1b77125221627 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 8.8E-26 T 06-07-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 535 36.451 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 SUPERFAMILY SSF54849 137 190 1.31E-16 T 06-07-2017 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 Gene3D G3DSA:1.10.560.10 365 518 5.1E-36 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 SUPERFAMILY SSF48592 405 520 2.82E-65 T 06-07-2017 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 SUPERFAMILY SSF48592 10 133 2.82E-65 T 06-07-2017 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 Gene3D G3DSA:1.10.560.10 9 187 6.8E-37 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 2.6E-87 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 PRINTS PR00298 60kDa chaperonin signature 349 374 4.2E-59 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 PRINTS PR00298 60kDa chaperonin signature 267 290 4.2E-59 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 PRINTS PR00298 60kDa chaperonin signature 27 53 4.2E-59 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 PRINTS PR00298 60kDa chaperonin signature 397 418 4.2E-59 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 PRINTS PR00298 60kDa chaperonin signature 82 109 4.2E-59 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 404 415 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 525 4.2E-220 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 SUPERFAMILY SSF52029 183 375 1.39E-71 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS25875 08439afc557ad4897efb91cb20f695d6 546 Gene3D G3DSA:3.50.7.10 188 364 1.0E-83 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS31780 cfdc7c7f7f96a3047daf88dc350dfed3 361 SUPERFAMILY SSF53756 3 352 1.19E-10 T 06-07-2017 CDO28_RS31780 cfdc7c7f7f96a3047daf88dc350dfed3 361 Pfam PF13524 Glycosyl transferases group 1 255 346 1.3E-21 T 06-07-2017 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 SUPERFAMILY SSF52540 5 256 8.05E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 266 4.6E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 535 0.0024 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 SMART SM00382 34 234 6.7E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 SMART SM00382 311 503 7.9E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Pfam PF00005 ABC transporter 303 454 1.2E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Pfam PF00005 ABC transporter 26 184 1.1E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Gene3D G3DSA:3.40.50.300 275 527 8.2E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 Gene3D G3DSA:3.40.50.300 4 258 6.7E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09825 72cef0b8059bc1754b9b827355d8a652 542 SUPERFAMILY SSF52540 276 525 8.2E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 Gene3D G3DSA:1.10.10.10 14 80 2.4E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 Gene3D G3DSA:3.40.1410.10 81 250 1.5E-44 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 Pfam PF07702 UTRA domain 106 246 1.8E-36 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 SUPERFAMILY SSF46785 14 94 3.24E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 4.7E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 4.7E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 SUPERFAMILY SSF64288 72 250 1.19E-42 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 SMART SM00345 25 84 4.0E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 SMART SM00866 105 247 9.4E-29 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS29180 6047d9ade000b4d6236695ebf3871ab4 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 84 7.1E-20 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS16270 3cb7c5ee963c0cc8f770623d6645c561 313 Gene3D G3DSA:3.20.20.220 14 292 6.7E-93 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS16270 3cb7c5ee963c0cc8f770623d6645c561 313 SUPERFAMILY SSF51730 12 291 3.92E-83 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS16270 3cb7c5ee963c0cc8f770623d6645c561 313 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 16 288 5.1E-94 T 06-07-2017 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 CDO28_RS16270 3cb7c5ee963c0cc8f770623d6645c561 313 Pfam PF02219 Methylenetetrahydrofolate reductase 15 289 8.0E-84 T 06-07-2017 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS21010 52cc2ad6c2a4f461033624e1356047c3 386 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 221 378 3.6E-42 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21010 52cc2ad6c2a4f461033624e1356047c3 386 SUPERFAMILY SSF55073 226 380 1.57E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS21010 52cc2ad6c2a4f461033624e1356047c3 386 SMART SM00267 210 379 6.7E-54 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21010 52cc2ad6c2a4f461033624e1356047c3 386 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 375 1.1E-40 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21010 52cc2ad6c2a4f461033624e1356047c3 386 Gene3D G3DSA:3.30.70.270 224 382 3.8E-51 T 06-07-2017 CDO28_RS16295 9df2b41b5769ab561017a8255ec4b547 221 SUPERFAMILY SSF53335 11 190 3.1E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16295 9df2b41b5769ab561017a8255ec4b547 221 Gene3D G3DSA:3.40.50.150 18 162 3.8E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16295 9df2b41b5769ab561017a8255ec4b547 221 Pfam PF13649 Methyltransferase domain 52 150 2.2E-18 T 06-07-2017 CDO28_RS34275 b0335371618debb35aeb975d35e540fd 362 SUPERFAMILY SSF53955 81 199 2.78E-44 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS34275 b0335371618debb35aeb975d35e540fd 362 Pfam PF01464 Transglycosylase SLT domain 88 190 1.6E-26 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS34275 b0335371618debb35aeb975d35e540fd 362 Gene3D G3DSA:1.10.530.10 73 199 4.3E-44 T 06-07-2017 CDO28_RS15395 d11bd87a199a42450ed05e7605142aa5 337 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 57 190 7.8E-59 T 06-07-2017 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 CDO28_RS15395 d11bd87a199a42450ed05e7605142aa5 337 SUPERFAMILY SSF52540 33 312 5.93E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15395 d11bd87a199a42450ed05e7605142aa5 337 PIRSF PIRSF002849 2 336 2.1E-112 T 06-07-2017 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted CDO28_RS15395 d11bd87a199a42450ed05e7605142aa5 337 Gene3D G3DSA:3.40.50.300 39 206 6.3E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15395 d11bd87a199a42450ed05e7605142aa5 337 Gene3D G3DSA:1.10.8.300 220 334 1.1E-29 T 06-07-2017 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Pfam PF02910 Fumarate reductase flavoprotein C-term 473 613 1.2E-41 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Gene3D G3DSA:4.10.80.40 552 613 4.8E-25 T 06-07-2017 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Gene3D G3DSA:3.90.700.10 257 362 3.7E-42 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 56 65 - T 06-07-2017 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 22 613 3.6E-232 T 06-07-2017 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 SUPERFAMILY SSF51905 14 273 3.06E-77 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 SUPERFAMILY SSF51905 372 457 3.06E-77 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 SUPERFAMILY SSF46977 464 613 4.06E-46 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 19 613 3.7E-280 T 06-07-2017 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 PIRSF PIRSF000171 12 599 2.3E-33 T 06-07-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 SUPERFAMILY SSF56425 250 368 1.5E-41 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Pfam PF00890 FAD binding domain 22 418 2.6E-125 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Gene3D G3DSA:3.50.50.60 11 256 1.0E-122 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Gene3D G3DSA:3.50.50.60 364 436 1.0E-122 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11715 09a7b3bf67a12a514415eaee1b530906 613 Gene3D G3DSA:1.20.58.100 447 551 2.2E-38 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 SUPERFAMILY SSF51569 3 328 2.2E-97 T 06-07-2017 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 72 85 - T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 1.8E-88 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 3.7E-216 T 06-07-2017 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 4 329 3.6E-90 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 Gene3D G3DSA:3.20.20.70 1 335 1.0E-99 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31570 576e6928f4ceeec34476efa74152d59b 359 PIRSF PIRSF001359 1 329 4.1E-78 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS14785 d9feee527a9707dba3993633af43b178 295 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 248 270 1.3E-8 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDO28_RS14785 d9feee527a9707dba3993633af43b178 295 SMART SM00382 38 248 3.5E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14785 d9feee527a9707dba3993633af43b178 295 Pfam PF00005 ABC transporter 30 198 2.2E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14785 d9feee527a9707dba3993633af43b178 295 Gene3D G3DSA:3.40.50.300 9 270 3.2E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14785 d9feee527a9707dba3993633af43b178 295 SUPERFAMILY SSF52540 11 270 2.0E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13525 ec5b05f19df9fac8ada17890c046b720 122 SUPERFAMILY SSF52172 4 115 9.39E-17 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS13525 ec5b05f19df9fac8ada17890c046b720 122 Gene3D G3DSA:3.40.50.2300 4 113 6.2E-15 T 06-07-2017 CDO28_RS13525 ec5b05f19df9fac8ada17890c046b720 122 SMART SM00448 4 115 4.4E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13525 ec5b05f19df9fac8ada17890c046b720 122 Pfam PF00072 Response regulator receiver domain 7 113 1.6E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 270 2.8E-81 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 PIRSF PIRSF000193 8 272 4.6E-61 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 102 2.7E-11 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 Gene3D G3DSA:1.10.3730.10 165 270 1.6E-34 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 Gene3D G3DSA:3.40.50.720 9 162 9.1E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 165 270 6.0E-33 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 SUPERFAMILY SSF51735 9 162 9.54E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 270 25.429 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CDO28_RS15520 13c21fcc22dd13b0a03f400e4cb44a3c 272 SUPERFAMILY SSF48179 165 270 6.97E-31 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS02210 f5ed95daa3f4b71c29b0cdcc1deeda37 193 SUPERFAMILY SSF141523 52 104 1.11E-30 T 06-07-2017 CDO28_RS02210 f5ed95daa3f4b71c29b0cdcc1deeda37 193 SUPERFAMILY SSF141523 131 193 1.11E-30 T 06-07-2017 CDO28_RS02210 f5ed95daa3f4b71c29b0cdcc1deeda37 193 Gene3D G3DSA:2.40.440.10 54 193 8.2E-33 T 06-07-2017 CDO28_RS02210 f5ed95daa3f4b71c29b0cdcc1deeda37 193 Pfam PF03734 L,D-transpeptidase catalytic domain 58 192 4.3E-19 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF47384 989 1072 3.34E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55785 587 720 1.34E-21 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00086 681 723 1.2E-6 T 06-07-2017 IPR001610 PAC motif CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00086 809 851 0.21 T 06-07-2017 IPR001610 PAC motif CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00086 392 434 1.2E-8 T 06-07-2017 IPR001610 PAC motif CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00086 942 984 0.013 T 06-07-2017 IPR001610 PAC motif CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1119 1222 3.3E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55874 1083 1222 3.67E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00387 1118 1225 4.3E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00388 1006 1076 1.2E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55785 300 431 2.42E-22 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55785 502 598 9.6E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55785 848 981 1.1E-21 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SUPERFAMILY SSF55785 720 848 7.57E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1006 1071 3.0E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1172 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1174 1184 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1185 1203 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1209 1222 2.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00091 313 386 7.5 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00091 602 675 44.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00091 735 803 2.4 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 SMART SM00091 863 936 1.9 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 497 568 1.2E-18 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 436 463 1.2E-18 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 592 720 7.9E-26 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 726 848 1.2E-21 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 307 431 2.6E-27 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.450.20 853 981 5.4E-26 T 06-07-2017 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF05231 MASE1 14 294 3.6E-73 T 06-07-2017 IPR007895 MASE1 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 309 441 1.2E-14 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 732 858 2.3E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 602 730 9.1E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 859 991 4.8E-14 T 06-07-2017 IPR000014 PAS domain CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF08447 PAS fold 758 841 9.0E-11 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF08447 PAS fold 886 976 4.1E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF08447 PAS fold 657 715 8.2E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Pfam PF08447 PAS fold 337 424 1.8E-16 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS28580 e585c695760f1af06473fcf0d961ec60 1229 Gene3D G3DSA:3.30.565.10 1083 1222 2.2E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29640 c035e796830e3922747879e34297f7fb 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 208 1.8E-27 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29640 c035e796830e3922747879e34297f7fb 258 Gene3D G3DSA:3.20.20.150 2 257 7.3E-78 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29640 c035e796830e3922747879e34297f7fb 258 PIRSF PIRSF006241 1 258 1.2E-84 T 06-07-2017 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 CDO28_RS29640 c035e796830e3922747879e34297f7fb 258 SUPERFAMILY SSF51658 1 256 8.02E-73 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 SUPERFAMILY SSF160467 6 88 1.09E-10 T 06-07-2017 CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 SMART SM00797 255 535 1.5E-90 T 06-07-2017 IPR003778 Carboxyltransferase domain, subdomain A and B CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 SMART SM00796 5 195 2.7E-81 T 06-07-2017 IPR003833 Carboxyltransferase domain, subdomain C and D CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 Pfam PF02626 Allophanate hydrolase subunit 2 257 521 6.0E-76 T 06-07-2017 IPR003778 Carboxyltransferase domain, subdomain A and B CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 Gene3D G3DSA:3.30.1360.40 6 73 9.7E-9 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 SUPERFAMILY SSF50891 411 523 5.69E-16 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 Pfam PF02682 Allophanate hydrolase subunit 1 6 195 2.2E-62 T 06-07-2017 IPR003833 Carboxyltransferase domain, subdomain C and D CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 SUPERFAMILY SSF50891 85 206 2.24E-40 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 Gene3D G3DSA:2.40.100.10 411 524 4.5E-13 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS18410 77d56f18fa8db0e56e3f4c34ba1b49bd 535 Gene3D G3DSA:2.40.100.10 84 208 1.5E-47 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS12505 b4a2a07ce798d2b0d14318373688d828 266 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 15 254 2.1E-39 T 06-07-2017 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CDO28_RS12505 b4a2a07ce798d2b0d14318373688d828 266 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 15 254 2.8E-67 T 06-07-2017 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 31 482 2.4E-187 T 06-07-2017 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 SUPERFAMILY SSF53807 28 488 1.81E-163 T 06-07-2017 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 15 487 8.2E-260 T 06-07-2017 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 72 473 4.2E-110 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 Gene3D G3DSA:3.40.50.1980 223 327 1.1E-50 T 06-07-2017 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 Gene3D G3DSA:3.40.50.1980 13 219 1.4E-72 T 06-07-2017 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 162 176 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 91 98 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23010 e1f76c91422c925e9a8bb344b5f80d9a 500 Gene3D G3DSA:3.40.50.1980 353 490 1.6E-64 T 06-07-2017 CDO28_RS15605 8ae4766dd9a9f59ca87103177f453a2d 156 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 152 1.0E-22 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS15605 8ae4766dd9a9f59ca87103177f453a2d 156 Gene3D G3DSA:3.40.50.720 2 153 3.8E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15605 8ae4766dd9a9f59ca87103177f453a2d 156 SUPERFAMILY SSF51735 1 151 5.77E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 282 1.7E-57 T 06-07-2017 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 SUPERFAMILY SSF53335 6 283 7.13E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 285 41.666 T 06-07-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 189 195 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 Pfam PF05175 Methyltransferase small domain 118 197 3.9E-12 T 06-07-2017 IPR007848 Methyltransferase small domain GO:0008168 CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 Gene3D G3DSA:3.40.50.150 90 284 1.1E-60 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 Gene3D G3DSA:1.10.8.10 4 87 2.3E-21 T 06-07-2017 CDO28_RS14085 d4df516cc86adfd6a10dc0f13942cea3 293 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 281 1.5E-79 T 06-07-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 Pfam PF00696 Amino acid kinase family 20 248 2.4E-38 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 TIGRFAM TIGR01027 proB: glutamate 5-kinase 20 268 1.9E-69 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 SUPERFAMILY SSF53633 20 268 1.83E-54 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 Gene3D G3DSA:3.40.1160.10 19 269 2.3E-44 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PRINTS PR00474 Glutamate 5-kinase family signature 129 150 5.2E-41 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PRINTS PR00474 Glutamate 5-kinase family signature 89 117 5.2E-41 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PRINTS PR00474 Glutamate 5-kinase family signature 161 188 5.2E-41 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PRINTS PR00474 Glutamate 5-kinase family signature 56 70 5.2E-41 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PRINTS PR00474 Glutamate 5-kinase family signature 222 242 5.2E-41 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 Hamap MF_00456 Glutamate 5-kinase [proB]. 18 270 30.056 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS18145 acbef6072008758c8e6b29c49517590e 279 PIRSF PIRSF000729 15 278 4.4E-75 T 06-07-2017 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDO28_RS33045 5e6609af9dc380930a89571eda68b12f 327 Gene3D G3DSA:3.40.50.2300 148 299 3.3E-41 T 06-07-2017 CDO28_RS33045 5e6609af9dc380930a89571eda68b12f 327 SUPERFAMILY SSF53822 25 323 1.57E-60 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS33045 5e6609af9dc380930a89571eda68b12f 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 27 307 8.6E-44 T 06-07-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain CDO28_RS33045 5e6609af9dc380930a89571eda68b12f 327 PIRSF PIRSF002816 1 326 2.5E-132 T 06-07-2017 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 CDO28_RS33045 5e6609af9dc380930a89571eda68b12f 327 Gene3D G3DSA:3.40.50.2300 24 147 1.5E-39 T 06-07-2017 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.30.1490.20 205 253 2.4E-16 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1152 13.131 T 06-07-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF48108 449 604 1.26E-47 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.30.470.20 836 1025 4.0E-66 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.30.470.20 254 452 2.6E-77 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.30.1490.20 751 835 3.9E-19 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF56059 203 454 1.94E-100 T 06-07-2017 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 483 602 5.0E-41 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SMART SM01096 480 602 1.2E-72 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 924 931 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Pfam PF02142 MGS-like domain 1047 1132 1.2E-18 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF52335 1026 1162 1.96E-39 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 198 1143 0.0 T 06-07-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF56059 738 1024 7.78E-90 T 06-07-2017 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.40.50.1380 1028 1161 1.2E-40 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 660 670 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 835 854 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 1003 1021 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 869 886 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 924 953 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 778 790 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 631 645 4.7E-28 T 06-07-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 774 788 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:1.10.1030.10 453 591 2.0E-47 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.40.50.20 3 108 5.6E-44 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SMART SM00851 1046 1132 5.4E-31 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF52440 618 740 2.59E-45 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 SUPERFAMILY SSF52440 1 127 1.38E-49 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 738 801 4.2E-7 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 203 387 8.4E-65 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 828 961 2.2E-15 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 350 357 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS02300 241cba6ae2b41c1edf9d5653625c0114 1163 Gene3D G3DSA:3.40.50.20 592 727 2.3E-56 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 Pfam PF01011 PQQ enzyme repeat 504 537 2.7E-7 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 259 280 - T 06-07-2017 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SUPERFAMILY SSF50998 32 598 1.1E-174 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 Gene3D G3DSA:2.140.10.10 33 601 2.9E-167 T 06-07-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SMART SM00564 263 311 150.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SMART SM00564 80 113 14.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SMART SM00564 499 530 9.4E-4 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SMART SM00564 132 164 2.2E-4 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 SMART SM00564 178 215 180.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 Pfam PF13360 PQQ-like domain 78 214 1.6E-13 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat CDO28_RS31475 d126f19f83dc1cb99835d0bcbf86d394 601 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 18 558 1.7E-237 T 06-07-2017 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 12 163 5.9E-12 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 Gene3D G3DSA:3.30.70.1230 11 174 1.2E-24 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 Pfam PF13432 Tetratricopeptide repeat 427 487 2.5E-9 T 06-07-2017 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SUPERFAMILY SSF48452 411 585 2.49E-25 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SUPERFAMILY SSF55073 7 174 6.28E-42 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 Gene3D G3DSA:1.25.40.10 344 587 1.2E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SMART SM00028 420 453 0.0015 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SMART SM00028 454 487 0.024 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SMART SM00028 529 562 240.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS33180 ce4f76dac78766fc01481a9f19c04f63 624 SMART SM00028 563 596 270.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 1.6E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 1.6E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 1.6E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 Pfam PF09278 MerR, DNA binding 55 120 4.5E-18 T 06-07-2017 IPR015358 Transcription regulator MerR, DNA binding CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 Gene3D G3DSA:1.10.1660.10 67 146 3.7E-17 T 06-07-2017 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 SMART SM00422 13 81 2.0E-24 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 Pfam PF00376 MerR family regulatory protein 14 50 2.9E-13 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 SUPERFAMILY SSF46955 13 136 1.14E-29 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 12 151 1.2E-64 T 06-07-2017 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 CDO28_RS00140 50672bc65949d37adfefe8bda608736c 161 Gene3D G3DSA:1.10.1660.10 10 66 4.6E-21 T 06-07-2017 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 551 717 5.0E-36 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 SMART SM01008 208 287 1.4E-21 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 328 433 1.1E-29 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 SUPERFAMILY SSF56003 313 717 1.83E-110 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 32 185 5.7E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 310 555 3.7E-34 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 594 671 2.4E-14 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 15 180 8.5E-14 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 313 327 1.2E-5 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 435 460 1.2E-5 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.30.365.10 507 550 2.2E-7 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 SUPERFAMILY SSF56003 7 241 3.84E-45 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 PIRSF PIRSF036389 1 722 1.4E-230 T 06-07-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related CDO28_RS23830 8bf89a449f57e421e2c5eb212e7edf8b 723 Gene3D G3DSA:3.90.1170.50 186 286 1.8E-21 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 Gene3D G3DSA:3.40.50.720 6 117 4.6E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 235 251 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 298 9.8E-56 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 156 183 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 SUPERFAMILY SSF51735 106 299 4.3E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 19 329 3.9E-34 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 Gene3D G3DSA:3.40.50.720 118 301 1.3E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09735 b9da1ab2cc5208fe481aa0dff3ed1d75 334 SUPERFAMILY SSF52283 6 141 8.88E-36 T 06-07-2017 CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 Gene3D G3DSA:1.10.10.10 18 113 1.4E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 SMART SM00862 35 110 6.1E-14 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 SUPERFAMILY SSF48452 728 857 3.35E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 Pfam PF00486 Transcriptional regulatory protein, C terminal 35 110 6.2E-13 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 SUPERFAMILY SSF46894 18 111 6.52E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 Gene3D G3DSA:3.40.50.300 140 266 2.1E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 SUPERFAMILY SSF52540 123 400 2.09E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23905 9cd0965fa8b1c0a0d76f685ac1839500 955 Gene3D G3DSA:1.25.40.10 590 856 2.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 71 3.4E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 SUPERFAMILY SSF46785 10 80 1.41E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 Gene3D G3DSA:1.10.10.10 13 78 9.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 8.2E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 8.2E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 SUPERFAMILY SSF53383 120 479 4.03E-80 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 Gene3D G3DSA:3.40.640.10 152 367 8.3E-52 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 SMART SM00345 17 76 2.6E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS34190 2f38f770b1491b817a243009669d46bf 485 Pfam PF00155 Aminotransferase class I and II 137 449 1.1E-15 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS00035 e81f1da203306ddd325b12a5a068e46b 397 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 69 292 1.7E-40 T 06-07-2017 IPR008775 Phytanoyl-CoA dioxygenase CDO28_RS00035 e81f1da203306ddd325b12a5a068e46b 397 SUPERFAMILY SSF51197 83 364 5.13E-48 T 06-07-2017 CDO28_RS00035 e81f1da203306ddd325b12a5a068e46b 397 Gene3D G3DSA:2.60.120.620 83 291 9.2E-13 T 06-07-2017 CDO28_RS26935 cd470d2e29e399632f36a47ea1f948dd 235 Pfam PF06299 Protein of unknown function (DUF1045) 61 219 2.5E-60 T 06-07-2017 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS26935 cd470d2e29e399632f36a47ea1f948dd 235 PIRSF PIRSF033328 1 235 4.3E-86 T 06-07-2017 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS26935 cd470d2e29e399632f36a47ea1f948dd 235 TIGRFAM TIGR03223 Phn_opern_protn: putative phosphonate metabolism protein 2 227 2.0E-82 T 06-07-2017 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 SUPERFAMILY SSF46785 1 62 1.27E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 Gene3D G3DSA:1.10.10.10 1 52 1.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 2.1E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 2.1E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 2.1E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 Gene3D G3DSA:3.30.70.920 55 130 5.2E-17 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 SMART SM00344 2 108 9.2E-33 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 Pfam PF01037 Lrp/AsnC ligand binding domain 68 133 6.0E-15 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 48 6.3E-15 T 06-07-2017 CDO28_RS08840 f61aa3f6b4262b98b5adc3f8c432cbbe 145 SUPERFAMILY SSF54909 63 137 4.83E-15 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 Gene3D G3DSA:3.20.20.70 21 336 2.0E-66 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 260 345 2.3E-10 T 06-07-2017 IPR023885 4Fe4S-binding SPASM domain CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 Pfam PF13186 Iron-sulfur cluster-binding domain 252 318 1.5E-9 T 06-07-2017 IPR023885 4Fe4S-binding SPASM domain CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 SMART SM00729 22 225 0.0092 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 SUPERFAMILY SSF102114 20 327 4.58E-71 T 06-07-2017 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 Pfam PF13353 4Fe-4S single cluster domain 29 130 5.0E-6 T 06-07-2017 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 375 175.966 T 06-07-2017 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 Pfam PF04055 Radical SAM superfamily 28 183 4.2E-23 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 17 373 8.7E-184 T 06-07-2017 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 CDO28_RS31615 a48622222b36a89c336ca39b50d25ada 375 PIRSF PIRSF037420 10 365 4.4E-112 T 06-07-2017 IPR017200 Coenzyme PQQ synthesis protein E CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 SUPERFAMILY SSF54826 3 138 8.49E-41 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 SUPERFAMILY SSF51604 183 424 2.23E-69 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 1.1E-6 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 Gene3D G3DSA:3.30.390.10 1 177 2.3E-85 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 SMART SM00922 198 294 1.9E-23 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 Gene3D G3DSA:3.20.20.120 181 423 2.6E-92 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS26215 697408b1f806fe9fd2f481983e44bb50 425 Pfam PF13378 Enolase C-terminal domain-like 201 415 2.9E-58 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS01330 76bb422883d19dc05b95f8d89cda65b0 284 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 8 79 6.9E-34 T 06-07-2017 IPR018753 Azospirillum phage Cd, Gp10 CDO28_RS01330 76bb422883d19dc05b95f8d89cda65b0 284 Hamap MF_00797 UPF0335 protein . 3 80 22.554 T 06-07-2017 IPR018753 Azospirillum phage Cd, Gp10 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 321 344 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 173 197 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 80 108 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 212 240 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 247 273 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 10 34 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 PRINTS PR01874 DNA repair protein radA signature 122 139 5.3E-88 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 SMART SM00382 88 243 3.3E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 431 1.2E-168 T 06-07-2017 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 428 2.3E-7 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 Pfam PF13481 AAA domain 67 221 4.1E-19 T 06-07-2017 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 SUPERFAMILY SSF54211 302 429 4.93E-36 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 SUPERFAMILY SSF54211 254 268 4.93E-36 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 SUPERFAMILY SSF52540 65 289 8.8E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 Gene3D G3DSA:3.30.230.10 285 430 5.5E-31 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 Hamap MF_01498 DNA repair protein RadA [radA]. 21 454 43.986 T 06-07-2017 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CDO28_RS04875 dda5a9010ccb3894f84308d8b820070e 467 Gene3D G3DSA:3.40.50.300 66 276 3.9E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14670 207592f5ea9500a239160ba17cd13970 445 Gene3D G3DSA:3.40.605.10 2 226 6.1E-76 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS14670 207592f5ea9500a239160ba17cd13970 445 SUPERFAMILY SSF53720 2 441 5.89E-150 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS14670 207592f5ea9500a239160ba17cd13970 445 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 213 220 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS14670 207592f5ea9500a239160ba17cd13970 445 Gene3D G3DSA:3.40.309.10 227 405 8.4E-69 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS14670 207592f5ea9500a239160ba17cd13970 445 Pfam PF00171 Aldehyde dehydrogenase family 3 439 1.1E-153 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 SMART SM00382 33 230 5.7E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 SMART SM00382 379 568 1.4E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 SUPERFAMILY SSF52540 4 251 5.21E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 314 9.9E-17 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Gene3D G3DSA:3.40.50.300 2 256 2.5E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Gene3D G3DSA:3.40.50.300 341 592 8.5E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 ProSitePatterns PS00211 ABC transporters family signature. 491 505 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Pfam PF00005 ABC transporter 25 180 9.5E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Pfam PF00005 ABC transporter 371 517 1.6E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 SUPERFAMILY SSF52540 365 589 1.2E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 295 9.1E-17 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS19705 a12a88d48d1ff20f75737b1b5c68047f 678 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 573 629 8.7E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 SUPERFAMILY SSF53474 3 274 4.53E-67 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.7E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 1.7E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 1.7E-11 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 Gene3D G3DSA:3.40.50.1820 3 274 3.3E-76 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28540 5471f7e96f1b900815553adf0dc14dc0 276 Pfam PF00561 alpha/beta hydrolase fold 23 253 1.4E-28 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 278 332 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 33 558 9.3E-205 T 06-07-2017 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 Gene3D G3DSA:1.20.210.10 26 583 8.3E-178 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 SUPERFAMILY SSF81442 29 560 8.63E-154 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 42 506 4.1E-132 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 346 367 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 80 103 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 381 399 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 337 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 409 428 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 459 480 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 108 132 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 276 297 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14590 5fa28c0dc72876ae6c9a99f63169b032 593 PRINTS PR01165 Cytochrome c oxidase subunit I signature 32 57 3.2E-70 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24415 cf256184d0573c51030a031900c40361 338 SUPERFAMILY SSF51430 5 326 1.18E-67 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24415 cf256184d0573c51030a031900c40361 338 Gene3D G3DSA:3.20.20.100 5 326 5.2E-59 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24415 cf256184d0573c51030a031900c40361 338 Pfam PF00248 Aldo/keto reductase family 20 326 7.1E-50 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 177 240 4.0E-7 T 06-07-2017 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 5.2E-30 T 06-07-2017 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 SUPERFAMILY SSF101386 5 108 1.29E-26 T 06-07-2017 CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 TIGRFAM TIGR00444 mazG: MazG family protein 13 270 1.1E-92 T 06-07-2017 IPR011551 NTP pyrophosphohydrolase MazG CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 SUPERFAMILY SSF101386 152 249 3.43E-26 T 06-07-2017 CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 Gene3D G3DSA:1.10.287.1080 148 231 1.3E-13 T 06-07-2017 CDO28_RS03040 e30de09222b7caae8574f33ea9cd7acc 277 Gene3D G3DSA:1.10.287.1080 22 76 9.9E-8 T 06-07-2017 CDO28_RS21130 20e9d1ef25a3226686ca3f000385c3bc 479 Pfam PF05292 Malonyl-CoA decarboxylase (MCD) 83 416 1.9E-142 T 06-07-2017 IPR007956 Malonyl-CoA decarboxylase GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390918 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Gene3D G3DSA:1.10.220.30 20 79 8.4E-9 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 SUPERFAMILY SSF48029 129 337 4.45E-42 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 SUPERFAMILY SSF48029 20 109 8.11E-14 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Gene3D G3DSA:1.10.220.30 87 202 7.4E-20 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Gene3D G3DSA:1.10.220.30 208 343 9.6E-26 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Pfam PF01706 FliG C-terminal domain 230 337 4.1E-21 T 06-07-2017 IPR023087 Flagellar motor switch protein FliG, C-terminal CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 207 232 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 260 280 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 284 310 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 128 151 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 18 34 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 47 73 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 PRINTS PR00954 Flagellar motor switch protein FliG signature 238 258 7.8E-48 T 06-07-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Pfam PF14842 FliG N-terminal domain 18 109 3.5E-16 T 06-07-2017 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CDO28_RS07380 ff429df6bca83f6ea3c2b1dbf9b90720 345 Pfam PF14841 FliG middle domain 131 201 5.9E-17 T 06-07-2017 IPR032779 Flagellar motor switch protein FliG, middle domain CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 SUPERFAMILY SSF51971 388 483 5.65E-9 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Gene3D G3DSA:3.50.50.60 236 404 2.2E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Gene3D G3DSA:1.10.1060.10 3 148 6.9E-42 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 PRINTS PR00419 Adrenodoxin reductase family signature 147 169 8.3E-24 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 PRINTS PR00419 Adrenodoxin reductase family signature 170 183 8.3E-24 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 8.3E-24 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 PRINTS PR00419 Adrenodoxin reductase family signature 212 222 8.3E-24 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Gene3D G3DSA:3.40.50.720 149 235 4.2E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Gene3D G3DSA:3.40.50.720 414 482 4.2E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 SUPERFAMILY SSF51971 144 404 1.88E-64 T 06-07-2017 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 SUPERFAMILY SSF46548 2 156 7.85E-38 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 146 466 5.1E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 133 1.1E-25 T 06-07-2017 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CDO28_RS13065 9c59c2910505a2a6e81fa9510d329a16 485 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 484 4.1E-186 T 06-07-2017 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 SUPERFAMILY SSF50331 237 359 6.56E-28 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 SMART SM00382 29 212 1.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Pfam PF08402 TOBE domain 282 352 8.0E-9 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Gene3D G3DSA:2.40.50.140 286 345 6.3E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Pfam PF00005 ABC transporter 21 162 6.6E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 SUPERFAMILY SSF52540 5 244 8.6E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Gene3D G3DSA:3.40.50.300 4 235 1.2E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Gene3D G3DSA:2.40.50.100 346 360 2.9E-17 T 06-07-2017 CDO28_RS10040 257c5950c87d568e3b25c9521a855ae0 360 Gene3D G3DSA:2.40.50.100 240 285 2.9E-17 T 06-07-2017 CDO28_RS04665 00fd65403f2674ccfccaa4251a348f22 186 Gene3D G3DSA:1.10.3300.10 4 182 2.9E-36 T 06-07-2017 IPR023286 ABATE domain CDO28_RS04665 00fd65403f2674ccfccaa4251a348f22 186 Pfam PF07336 Putative stress-induced transcription regulator 13 132 4.9E-7 T 06-07-2017 IPR010852 Putative stress-induced transcription regulator CDO28_RS04665 00fd65403f2674ccfccaa4251a348f22 186 SUPERFAMILY SSF160904 4 179 1.24E-36 T 06-07-2017 CDO28_RS04665 00fd65403f2674ccfccaa4251a348f22 186 Pfam PF11706 CGNR zinc finger 139 179 1.2E-17 T 06-07-2017 IPR021005 Zinc finger, CGNR CDO28_RS03275 921eb819b6fbc20479a8cd3cbc0a04e9 124 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 33 101 20.267 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor CDO28_RS03275 921eb819b6fbc20479a8cd3cbc0a04e9 124 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 48 100 3.0E-25 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor CDO28_RS03275 921eb819b6fbc20479a8cd3cbc0a04e9 124 Pfam PF01809 Haemolytic domain 38 100 9.4E-24 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor CDO28_RS03275 921eb819b6fbc20479a8cd3cbc0a04e9 124 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 39 103 7.6E-23 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor CDO28_RS03275 921eb819b6fbc20479a8cd3cbc0a04e9 124 SMART SM01234 33 100 2.1E-32 T 06-07-2017 IPR002696 Putative membrane protein insertion efficiency factor CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Gene3D G3DSA:3.40.50.300 308 566 6.1E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 SUPERFAMILY SSF52540 308 564 4.5E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 ProSitePatterns PS00211 ABC transporters family signature. 465 479 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Pfam PF00005 ABC transporter 29 193 8.0E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Pfam PF00005 ABC transporter 337 492 2.9E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 544 575 1.7E-5 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 277 1.5E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 SMART SM00382 346 542 3.6E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 SMART SM00382 36 243 2.3E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 SUPERFAMILY SSF52540 7 264 4.18E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26570 cd07772f7f66df11b415057d6c6556e9 630 Gene3D G3DSA:3.40.50.300 6 269 2.9E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 SUPERFAMILY SSF52402 482 609 4.19E-67 T 06-07-2017 CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 SUPERFAMILY SSF52402 231 382 4.19E-67 T 06-07-2017 CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 Gene3D G3DSA:3.60.20.10 18 221 4.0E-85 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 PIRSF PIRSF001589 1 645 5.5E-165 T 06-07-2017 CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 Pfam PF00733 Asparagine synthase 240 632 6.1E-93 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 563 2.9E-153 T 06-07-2017 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 Pfam PF13537 Glutamine amidotransferase domain 45 163 3.7E-45 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 SUPERFAMILY SSF56235 14 220 4.63E-67 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 Gene3D G3DSA:3.40.50.620 477 632 1.4E-79 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS29550 f1d586dd7e0c6082af414a7e23fb5978 645 Gene3D G3DSA:3.40.50.620 222 378 1.4E-79 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS07150 b5344eb0362e58ad6decd3ea0ecb67ee 380 Gene3D G3DSA:1.10.3720.10 147 366 1.9E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07150 b5344eb0362e58ad6decd3ea0ecb67ee 380 Gene3D G3DSA:1.10.3720.10 4 49 1.9E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07150 b5344eb0362e58ad6decd3ea0ecb67ee 380 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 182 372 5.4E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07150 b5344eb0362e58ad6decd3ea0ecb67ee 380 SUPERFAMILY SSF161098 5 49 1.64E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07150 b5344eb0362e58ad6decd3ea0ecb67ee 380 SUPERFAMILY SSF161098 148 379 1.64E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Hamap MF_01953 Urease subunit alpha [ureC]. 3 570 56.634 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 SUPERFAMILY SSF51338 426 479 3.71E-6 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 SUPERFAMILY SSF51338 4 179 4.32E-64 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 ProSitePatterns PS00145 Urease active site. 319 335 - T 06-07-2017 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 SUPERFAMILY SSF51556 483 570 2.6E-197 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 SUPERFAMILY SSF51556 131 434 2.6E-197 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Gene3D G3DSA:3.20.20.140 139 431 9.7E-210 T 06-07-2017 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Gene3D G3DSA:3.20.20.140 490 568 9.7E-210 T 06-07-2017 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 570 9.8E-300 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 06-07-2017 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Pfam PF01979 Amidohydrolase family 127 453 6.2E-80 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Gene3D G3DSA:2.30.40.10 69 138 6.7E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 1.7E-57 T 06-07-2017 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 2.1E-34 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 2.1E-34 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 2.1E-34 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14850 44e5ca3cba34039aefafcc3eb5b9e8f7 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 2.1E-34 T 06-07-2017 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 Pfam PF03466 LysR substrate binding domain 94 297 3.3E-42 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 SUPERFAMILY SSF46785 5 117 4.73E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 Gene3D G3DSA:1.10.10.10 8 89 5.7E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 Gene3D G3DSA:3.40.190.10 97 181 5.5E-26 T 06-07-2017 CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 7.4E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 Gene3D G3DSA:3.40.190.10 182 266 6.0E-17 T 06-07-2017 CDO28_RS19205 36f0f4653d22924677bfbdefdb57b5e9 318 SUPERFAMILY SSF53850 95 298 1.33E-44 T 06-07-2017 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 Gene3D G3DSA:1.10.357.10 80 224 4.6E-29 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 79 1.2E-16 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 Gene3D G3DSA:1.10.10.60 20 79 1.8E-24 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 SUPERFAMILY SSF46689 20 91 4.99E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 SUPERFAMILY SSF48498 99 222 4.08E-35 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 1.1E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS10010 bc00dc70a08754da5eb7e991d7f6707e 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 1.1E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 PIRSF PIRSF036630 1 563 0.0 T 06-07-2017 IPR012047 Uncharacterised conserved protein UCP036630 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 Gene3D G3DSA:3.50.30.10 7 134 1.7E-42 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 Gene3D G3DSA:3.30.499.10 422 507 2.9E-6 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 Pfam PF01989 Protein of unknown function DUF126 26 101 2.8E-29 T 06-07-2017 IPR002840 Domain of unknown function DUF126 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 Pfam PF04412 Protein of unknown function (DUF521) 152 546 7.2E-141 T 06-07-2017 IPR007506 Domain of unknown function DUF521 CDO28_RS31920 0116726c1c1659c19322e76bc4b0a135 563 SUPERFAMILY SSF52016 7 129 5.57E-35 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SMART SM00316 648 719 1.4E-25 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:1.10.10.650 5 112 1.9E-42 T 06-07-2017 IPR023319 Tex-like protein, HTH domain CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Pfam PF16921 Tex protein YqgF-like domain 325 450 9.0E-51 T 06-07-2017 IPR032639 Tex protein, YqgF-like domain CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:1.10.150.310 498 629 1.9E-44 T 06-07-2017 IPR023097 Tex RuvX-like domain CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Pfam PF00575 S1 RNA binding domain 647 719 6.0E-21 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SUPERFAMILY SSF53098 320 468 5.31E-50 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SUPERFAMILY SSF158832 6 319 1.83E-109 T 06-07-2017 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SUPERFAMILY SSF50249 637 721 1.79E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SUPERFAMILY SSF47781 469 557 6.23E-27 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SMART SM00732 324 423 1.4E-38 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Pfam PF12836 Helix-hairpin-helix motif 490 554 7.2E-27 T 06-07-2017 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Pfam PF09371 Tex-like protein N-terminal domain 12 192 1.8E-65 T 06-07-2017 IPR018974 Tex-like protein, N-terminal CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 SUPERFAMILY SSF47781 560 630 2.0E-19 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:3.30.420.140 324 449 2.7E-51 T 06-07-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:2.40.50.140 633 720 1.0E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:1.10.3500.10 113 320 5.0E-94 T 06-07-2017 IPR023323 Tex-like domain CDO28_RS05110 3b8942a165e8bafebba07fd6da8028e2 768 Gene3D G3DSA:1.10.3500.10 450 497 5.0E-94 T 06-07-2017 IPR023323 Tex-like domain CDO28_RS03455 be1277f8a128cfa833a49d86f3545c9e 125 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 122 20.444 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDO28_RS03455 be1277f8a128cfa833a49d86f3545c9e 125 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 117 1.7E-24 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDO28_RS03455 be1277f8a128cfa833a49d86f3545c9e 125 TIGRFAM TIGR00494 crcB: protein CrcB 5 120 2.5E-28 T 06-07-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 SUPERFAMILY SSF51735 5 165 5.07E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 164 6.5E-39 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 SUPERFAMILY SSF48179 165 294 4.42E-29 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 PIRSF PIRSF000103 1 295 1.0E-74 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 Gene3D G3DSA:1.10.1040.10 167 293 3.9E-24 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 279 7.5E-17 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS29845 77af79e744be36586e5a0771b7c81bd6 295 Gene3D G3DSA:3.40.50.720 2 165 6.9E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 11 682 0.0 T 06-07-2017 IPR011966 Phenylacetic acid degradation protein PaaN CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 SUPERFAMILY SSF53720 11 512 6.94E-87 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 Gene3D G3DSA:3.40.309.10 272 463 3.1E-38 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 SUPERFAMILY SSF54637 538 683 1.38E-39 T 06-07-2017 IPR029069 HotDog domain CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 Pfam PF01575 MaoC like domain 549 648 6.5E-23 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 Gene3D G3DSA:3.40.605.10 11 271 3.2E-39 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 Pfam PF00171 Aldehyde dehydrogenase family 27 507 7.2E-62 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS30475 9d7156d56e5bc2f45f7e275d6b881550 688 Gene3D G3DSA:3.10.129.10 537 683 3.4E-46 T 06-07-2017 IPR029069 HotDog domain CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 ProSitePatterns PS00211 ABC transporters family signature. 420 434 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Gene3D G3DSA:3.40.50.300 5 256 7.9E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Pfam PF00005 ABC transporter 25 182 5.0E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Pfam PF00005 ABC transporter 300 447 2.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 266 5.3E-7 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 499 531 1.3E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 SUPERFAMILY SSF52540 293 519 7.41E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 SMART SM00382 309 497 7.5E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 SMART SM00382 33 232 1.8E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 Gene3D G3DSA:3.40.50.300 271 528 1.5E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14480 8b3765f2af0552a1500ab4da35b752e7 542 SUPERFAMILY SSF52540 20 254 2.97E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16425 8969e632d8a55b5177fb79adf3a407a3 309 Pfam PF08478 POTRA domain, FtsQ-type 89 157 7.4E-19 T 06-07-2017 IPR013685 Polypeptide-transport-associated, FtsQ-type CDO28_RS16425 8969e632d8a55b5177fb79adf3a407a3 309 Pfam PF03799 Cell division protein FtsQ 162 274 1.6E-15 T 06-07-2017 IPR005548 Cell division protein FtsQ/DivIB CDO28_RS16425 8969e632d8a55b5177fb79adf3a407a3 309 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 59 292 23.572 T 06-07-2017 IPR026579 Cell division protein FtsQ GO:0090529 CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 302 2.6E-18 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 Pfam PF00005 ABC transporter 28 186 9.7E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 320 4.1E-24 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 Gene3D G3DSA:3.40.50.300 7 260 2.9E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 SUPERFAMILY SSF52540 8 257 2.0E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14180 e8292b5d162e17e04188f8d53de1b92c 327 SMART SM00382 37 244 1.4E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31425 20f70e363ad5faf5b4d609c8660eebee 389 Pfam PF08495 FIST N domain 43 235 9.3E-33 T 06-07-2017 IPR013702 FIST domain, N-terminal CDO28_RS31425 20f70e363ad5faf5b4d609c8660eebee 389 Pfam PF10442 FIST C domain 238 365 7.7E-10 T 06-07-2017 IPR019494 FIST, C-domain CDO28_RS31425 20f70e363ad5faf5b4d609c8660eebee 389 SMART SM01204 238 368 1.2E-24 T 06-07-2017 IPR019494 FIST, C-domain CDO28_RS31425 20f70e363ad5faf5b4d609c8660eebee 389 SMART SM00897 40 237 5.8E-54 T 06-07-2017 IPR013702 FIST domain, N-terminal CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 SUPERFAMILY SSF90123 25 355 2.49E-44 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 ProSitePatterns PS00211 ABC transporters family signature. 511 525 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 Pfam PF00005 ABC transporter 386 539 9.1E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 Gene3D G3DSA:3.40.50.300 368 603 4.7E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 Pfam PF00664 ABC transporter transmembrane region 62 316 5.0E-11 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 Gene3D G3DSA:1.20.1560.10 33 350 4.4E-39 T 06-07-2017 CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 SUPERFAMILY SSF52540 360 609 1.81E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00160 c98128d4b4b3d6bcd52bcd1ceb3aec4f 621 SMART SM00382 394 585 2.1E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 SUPERFAMILY SSF49503 162 277 1.35E-16 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Pfam PF00394 Multicopper oxidase 216 281 2.0E-6 T 06-07-2017 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Gene3D G3DSA:2.60.40.420 37 159 5.5E-27 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Pfam PF07732 Multicopper oxidase 67 160 4.2E-27 T 06-07-2017 IPR011707 Multicopper oxidase, type 3 GO:0005507 CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Gene3D G3DSA:2.60.40.420 160 279 1.6E-22 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 ProSitePatterns PS00079 Multicopper oxidases signature 1. 441 461 - T 06-07-2017 IPR033138 Multicopper oxidases, conserved site CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 ProSitePatterns PS00080 Multicopper oxidases signature 2. 446 457 - T 06-07-2017 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 SUPERFAMILY SSF49503 313 463 7.16E-30 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Pfam PF07731 Multicopper oxidase 370 463 1.3E-23 T 06-07-2017 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 Gene3D G3DSA:2.60.40.420 346 463 2.2E-31 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS04535 1100364fb1b34ae6472f029029d4008b 464 SUPERFAMILY SSF49503 30 164 3.83E-30 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 Gene3D G3DSA:4.10.960.10 77 158 4.5E-29 T 06-07-2017 CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 Pfam PF00297 Ribosomal protein L3 86 181 2.8E-14 T 06-07-2017 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 06-07-2017 IPR019926 Ribosomal protein L3, conserved site CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 35.734 T 06-07-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 Gene3D G3DSA:2.40.30.10 159 212 3.2E-9 T 06-07-2017 CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 Gene3D G3DSA:2.40.30.10 4 33 3.2E-9 T 06-07-2017 CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 SUPERFAMILY SSF50447 1 213 3.88E-80 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS03630 f3ce74533a9e2f361d397b01372fca18 228 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 2.6E-84 T 06-07-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 Gene3D G3DSA:2.30.30.60 683 732 5.1E-15 T 06-07-2017 CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 SUPERFAMILY SSF82861 582 666 1.09E-12 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 Gene3D G3DSA:3.30.70.100 740 822 1.2E-20 T 06-07-2017 CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 SUPERFAMILY SSF50182 667 733 2.81E-16 T 06-07-2017 IPR010920 LSM domain CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 Pfam PF00924 Mechanosensitive ion channel 630 823 6.5E-50 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS17315 ad0c3716822813c686501aff8d02785a 854 SUPERFAMILY SSF82689 736 828 1.57E-21 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS14625 813100eccca859d6b076d33047ab9ca2 390 Gene3D G3DSA:3.90.1150.10 257 386 6.7E-30 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS14625 813100eccca859d6b076d33047ab9ca2 390 PIRSF PIRSF001434 5 388 4.0E-120 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS14625 813100eccca859d6b076d33047ab9ca2 390 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 18 384 1.8E-101 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS14625 813100eccca859d6b076d33047ab9ca2 390 SUPERFAMILY SSF53383 27 385 1.04E-93 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS14625 813100eccca859d6b076d33047ab9ca2 390 Gene3D G3DSA:3.40.640.10 17 256 3.8E-80 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 417 453 4300.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2560 2584 1900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 1616 1640 1400.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2324 2348 3100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2678 2702 1900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2442 2466 2200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 1852 1876 1700.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 1734 1758 3000.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2206 2230 1000.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2914 2938 6900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 1970 1994 3700.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2088 2112 3200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 3032 3056 5100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SMART SM00710 2796 2820 2000.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.120.260 537 728 4.0E-6 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2550 2614 1.5E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2312 2377 3.5E-6 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 1837 1905 2.1E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 1601 1672 1.5E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 1719 1792 3.1E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2192 2249 1.4E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2430 2488 1.6E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2663 2733 1.3E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 1955 2023 6.2E-8 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2073 2140 4.8E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2899 2970 3.4E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:2.60.40.360 2781 2851 2.4E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 SUPERFAMILY SSF141072 275 376 1.19E-7 T 06-07-2017 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Pfam PF04862 Protein of unknown function (DUF642) 547 727 3.3E-6 T 06-07-2017 IPR006946 Domain of unknown function DUF642 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2900 2928 7.5E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1602 1630 5.7E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2310 2338 3.1E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 3252 3303 2.4E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2546 2574 9.0E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2428 2456 9.4E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2074 2102 1.0E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1956 1984 6.4E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 3134 3158 3.1E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 3018 3045 4.4E-4 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1720 1747 2.5E-4 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1838 1866 3.4E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 413 455 8.7E-9 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2664 2692 9.0E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2782 2810 3.9E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2192 2220 2.4E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 744 788 5.0E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:4.10.1080.10 2417 2429 1.7E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:4.10.1080.10 2301 2311 1.7E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:4.10.1080.10 2537 2549 1.7E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:4.10.1080.10 2250 2266 1.7E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Gene3D G3DSA:4.10.1080.10 2184 2191 1.7E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Pfam PF01345 Domain of unknown function DUF11 731 783 2.7E-11 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Pfam PF01345 Domain of unknown function DUF11 3235 3298 7.7E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS23965 8d2003b97df5637161e1247fb356c3cd 3567 Pfam PF01345 Domain of unknown function DUF11 400 450 5.3E-10 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS31900 307f0e429ac04a9a63683f5144e7782f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 213 5.6E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31900 307f0e429ac04a9a63683f5144e7782f 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 108 3.6E-14 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS31900 307f0e429ac04a9a63683f5144e7782f 217 Gene3D G3DSA:1.10.3720.10 14 215 1.5E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31900 307f0e429ac04a9a63683f5144e7782f 217 SUPERFAMILY SSF161098 14 199 4.06E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30135 d5595ca4849bd33f01be6875ac91c4be 330 SUPERFAMILY SSF53850 27 263 2.45E-35 T 06-07-2017 CDO28_RS30135 d5595ca4849bd33f01be6875ac91c4be 330 Pfam PF09084 NMT1/THI5 like 46 258 1.0E-19 T 06-07-2017 IPR015168 SsuA/THI5-like CDO28_RS30135 d5595ca4849bd33f01be6875ac91c4be 330 Gene3D G3DSA:3.40.190.10 118 243 1.5E-17 T 06-07-2017 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 Gene3D G3DSA:3.40.50.300 332 504 3.5E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 540 549 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 418 433 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 SUPERFAMILY SSF55781 61 203 3.92E-7 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 Gene3D G3DSA:1.10.8.60 510 572 4.3E-16 T 06-07-2017 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 Pfam PF02954 Bacterial regulatory protein, Fis family 591 620 1.5E-8 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 603 623 2.0E-6 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 586 603 2.0E-6 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 Pfam PF00158 Sigma-54 interaction domain 335 498 1.5E-61 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 SUPERFAMILY SSF52540 334 570 3.8E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 SMART SM00382 352 495 1.3E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 Gene3D G3DSA:1.10.10.60 591 622 4.2E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 SUPERFAMILY SSF46689 587 622 2.37E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31110 5e5f957ea01c659c0aa965274190f90b 627 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 356 369 - T 06-07-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SUPERFAMILY SSF54211 435 549 1.34E-34 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Gene3D G3DSA:3.30.70.870 358 432 5.9E-13 T 06-07-2017 CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Pfam PF00679 Elongation factor G C-terminus 552 640 5.8E-17 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SUPERFAMILY SSF54980 552 642 1.29E-13 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Gene3D G3DSA:3.40.50.300 40 250 5.6E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Gene3D G3DSA:3.30.230.10 437 549 1.1E-40 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SMART SM00838 552 642 5.6E-5 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Pfam PF14492 Elongation Factor G, domain II 358 428 4.7E-9 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SUPERFAMILY SSF52540 1 249 4.43E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SUPERFAMILY SSF54980 358 432 3.13E-10 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 SMART SM00889 433 550 3.9E-53 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Pfam PF03764 Elongation factor G, domain IV 435 549 2.1E-36 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Gene3D G3DSA:3.30.70.240 550 645 5.0E-13 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS30840 c9f5a96b489c6767e81dc4b8b02fef30 653 Pfam PF00009 Elongation factor Tu GTP binding domain 52 248 2.0E-7 T 06-07-2017 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 SUPERFAMILY SSF46689 6 85 2.77E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 SUPERFAMILY SSF48498 80 191 3.11E-16 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 196 97.572 T 06-07-2017 IPR017757 Transcriptional repressor BetI CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 5.4E-16 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 3.1E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 3.1E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 Pfam PF13977 Bacterial transcriptional repressor 82 190 4.8E-26 T 06-07-2017 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 Gene3D G3DSA:1.10.357.10 1 190 7.5E-46 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS05795 5254dace3d8ca00c091d9129a024c634 203 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 190 1.2E-72 T 06-07-2017 IPR017757 Transcriptional repressor BetI CDO28_RS21845 0aaa4b1478aa5fe6c0a7202b8d19fdea 86 Pfam PF11154 Protein of unknown function (DUF2934) 40 74 4.5E-16 T 06-07-2017 IPR021327 Protein of unknown function DUF2934 CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 Gene3D G3DSA:3.40.50.300 211 367 3.5E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 06-07-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 Pfam PF00271 Helicase conserved C-terminal domain 235 339 1.6E-25 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 Pfam PF03880 DbpA RNA binding domain 470 540 4.9E-15 T 06-07-2017 IPR005580 DbpA, RNA-binding domain CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 SUPERFAMILY SSF52540 75 351 2.65E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 Gene3D G3DSA:3.40.50.300 6 210 6.3E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 SMART SM00490 258 339 1.4E-28 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 SMART SM00487 19 222 3.4E-46 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS08390 263c238b7f163eb8ee64349b40610fe9 630 Pfam PF00270 DEAD/DEAH box helicase 24 194 4.7E-41 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS15500 9c1611833d28a127d693a73ae3576d38 367 SUPERFAMILY SSF53335 5 355 5.73E-105 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS15500 9c1611833d28a127d693a73ae3576d38 367 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 62 296 1.3E-63 T 06-07-2017 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA Reactome: R-HSA-6799198 CDO28_RS26830 3e1c38d300a9eae721b17fc84b73f271 409 Pfam PF13416 Bacterial extracellular solute-binding protein 47 352 3.9E-38 T 06-07-2017 CDO28_RS26830 3e1c38d300a9eae721b17fc84b73f271 409 Gene3D G3DSA:3.40.190.10 156 339 5.7E-43 T 06-07-2017 CDO28_RS26830 3e1c38d300a9eae721b17fc84b73f271 409 SUPERFAMILY SSF53850 34 404 1.14E-77 T 06-07-2017 CDO28_RS26830 3e1c38d300a9eae721b17fc84b73f271 409 Gene3D G3DSA:3.40.190.10 36 155 1.1E-12 T 06-07-2017 CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 Gene3D G3DSA:3.40.190.10 91 176 3.4E-23 T 06-07-2017 CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 Pfam PF03466 LysR substrate binding domain 91 291 2.3E-43 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 SUPERFAMILY SSF53850 92 296 9.19E-44 T 06-07-2017 CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 Gene3D G3DSA:1.10.10.10 1 82 4.8E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 9.8E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 SUPERFAMILY SSF46785 3 113 5.36E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31220 a18c063d6a3a8a33f25c6ab3040e4822 298 Gene3D G3DSA:3.40.190.10 177 264 1.2E-19 T 06-07-2017 CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 Gene3D G3DSA:2.60.120.520 27 136 4.4E-42 T 06-07-2017 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 Gene3D G3DSA:2.60.120.500 137 282 3.6E-69 T 06-07-2017 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 PIRSF PIRSF006625 8 282 5.0E-133 T 06-07-2017 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 SUPERFAMILY SSF51182 9 266 3.69E-98 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 Pfam PF04962 KduI/IolB family 76 269 2.9E-30 T 06-07-2017 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS27355 657163148c3bab4c7d486ef0596b3647 282 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 8 282 55.486 T 06-07-2017 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SUPERFAMILY SSF54980 607 693 3.31E-29 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Pfam PF00679 Elongation factor G C-terminus 604 690 1.1E-29 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Gene3D G3DSA:3.40.50.300 5 291 4.3E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 694 0.0 T 06-07-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Gene3D G3DSA:3.30.230.10 488 602 9.5E-46 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 185 8.8E-36 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SUPERFAMILY SSF54980 408 485 8.63E-25 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Hamap MF_00054_B Elongation factor G [fusA]. 6 695 109.579 T 06-07-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Pfam PF03144 Elongation factor Tu domain 2 328 395 2.8E-16 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Pfam PF00009 Elongation factor Tu GTP binding domain 9 286 4.7E-68 T 06-07-2017 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SUPERFAMILY SSF54211 483 602 1.85E-41 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Pfam PF14492 Elongation Factor G, domain II 408 481 8.2E-35 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SMART SM00838 604 691 2.1E-52 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.8E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 PRINTS PR00315 GTP-binding elongation factor signature 135 144 4.8E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 PRINTS PR00315 GTP-binding elongation factor signature 99 110 4.8E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 PRINTS PR00315 GTP-binding elongation factor signature 83 93 4.8E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.8E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Gene3D G3DSA:2.40.30.10 309 409 5.6E-38 T 06-07-2017 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Pfam PF03764 Elongation factor G, domain IV 483 601 2.5E-45 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SUPERFAMILY SSF50447 269 408 3.06E-36 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SUPERFAMILY SSF52540 5 286 1.33E-106 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 SMART SM00889 484 602 5.4E-68 T 06-07-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Gene3D G3DSA:3.30.70.870 410 484 9.3E-39 T 06-07-2017 CDO28_RS03645 f5d139c61c8507bb9463e0e6a7186175 699 Gene3D G3DSA:3.30.70.240 603 689 4.6E-32 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Gene3D G3DSA:2.40.50.140 1015 1072 8.9E-4 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 SUPERFAMILY SSF89550 23 95 2.12E-10 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 SUPERFAMILY SSF89550 128 290 2.12E-10 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Gene3D G3DSA:1.10.150.280 854 887 2.0E-6 T 06-07-2017 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Pfam PF02811 PHP domain 25 202 3.0E-32 T 06-07-2017 IPR004013 PHP domain GO:0003824 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Pfam PF14579 Helix-hairpin-helix motif 829 917 6.5E-24 T 06-07-2017 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Gene3D G3DSA:3.20.20.140 23 284 5.6E-20 T 06-07-2017 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 SUPERFAMILY SSF160975 853 901 2.48E-5 T 06-07-2017 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 SMART SM00481 24 91 4.1E-18 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 325 756 7.5E-177 T 06-07-2017 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS04005 32d378cbe5b1ed937ffa855a587eb3bf 1169 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 23 1050 0.0 T 06-07-2017 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS31640 189dff9c684399a68097ef89c87b1fd7 627 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 52 226 4.4E-14 T 06-07-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CDO28_RS31640 189dff9c684399a68097ef89c87b1fd7 627 Gene3D G3DSA:2.60.120.260 479 626 2.5E-41 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS31640 189dff9c684399a68097ef89c87b1fd7 627 Pfam PF00578 AhpC/TSA family 324 431 2.1E-12 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS31640 189dff9c684399a68097ef89c87b1fd7 627 Gene3D G3DSA:3.40.30.10 311 453 5.1E-48 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS31640 189dff9c684399a68097ef89c87b1fd7 627 SUPERFAMILY SSF52833 307 448 2.11E-35 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 SMART SM00382 28 211 3.9E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Pfam PF00005 ABC transporter 20 161 7.1E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Gene3D G3DSA:3.40.50.300 4 234 7.5E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Gene3D G3DSA:2.40.50.100 239 283 4.2E-7 T 06-07-2017 CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Gene3D G3DSA:2.40.50.100 342 351 4.2E-7 T 06-07-2017 CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Gene3D G3DSA:2.40.50.140 284 336 1.9E-10 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 Pfam PF08402 TOBE domain 280 344 5.1E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 SUPERFAMILY SSF52540 4 242 6.62E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 SUPERFAMILY SSF50331 236 356 4.89E-26 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS11760 28a9459aba3bc5564f4766115007afbb 356 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 SUPERFAMILY SSF103190 162 245 1.57E-6 T 06-07-2017 IPR029151 Periplasmic sensor domain-like CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 SMART SM00044 417 617 2.1E-18 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Gene3D G3DSA:3.30.450.20 231 353 2.3E-6 T 06-07-2017 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Gene3D G3DSA:3.30.450.20 175 230 5.2E-18 T 06-07-2017 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Gene3D G3DSA:3.30.450.20 96 128 5.2E-18 T 06-07-2017 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 454 629 6.2E-33 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Pfam PF02743 Cache domain 54 327 2.4E-15 T 06-07-2017 IPR033479 Double Cache domain 1 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 SUPERFAMILY SSF55073 452 636 4.08E-56 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Gene3D G3DSA:3.30.70.1230 453 635 1.2E-45 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 Pfam PF00672 HAMP domain 358 425 4.9E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS09275 e02d3c380bf9fe57037b7b22e6d37f57 651 SMART SM00304 377 430 1.9E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 65 83 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 110 128 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 SUPERFAMILY SSF51120 20 206 5.23E-41 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 38 56 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 83 101 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Gene3D G3DSA:2.150.10.10 5 211 2.1E-55 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 101 119 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 77 94 0.002 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 59 76 6.8E-4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 41 58 0.011 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 105 121 2.9E-4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 142 150 9.2 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 139 0.11 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 22 2.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 26 40 0.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 119 137 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 92 110 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 PRINTS PR00313 NodO calcium binding signature 57 68 4.4E-13 T 06-07-2017 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 PRINTS PR00313 NodO calcium binding signature 132 141 4.4E-13 T 06-07-2017 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 PRINTS PR00313 NodO calcium binding signature 114 122 4.4E-13 T 06-07-2017 CDO28_RS27185 0b5ee719412d438c76faca46f0aad4bc 219 PRINTS PR00313 NodO calcium binding signature 78 86 4.4E-13 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Pfam PF04983 RNA polymerase Rpb1, domain 3 491 644 3.8E-26 T 06-07-2017 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 SMART SM00663 237 516 2.9E-180 T 06-07-2017 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 14 638 32.194 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 344 9.8E-90 T 06-07-2017 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 16 1370 10.307 T 06-07-2017 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Gene3D G3DSA:2.40.40.20 351 378 2.7E-37 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Gene3D G3DSA:2.40.40.20 419 491 2.7E-37 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 SUPERFAMILY SSF64484 17 940 0.0 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 SUPERFAMILY SSF64484 1126 1357 0.0 T 06-07-2017 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 20 1016 0.0 T 06-07-2017 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Pfam PF04998 RNA polymerase Rpb1, domain 5 762 1309 1.3E-71 T 06-07-2017 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Pfam PF00623 RNA polymerase Rpb1, domain 2 346 487 5.5E-34 T 06-07-2017 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 758 5.8E-18 T 06-07-2017 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03665 c98c6812e284db1a493c939374c79b35 1401 Gene3D G3DSA:2.40.50.100 1148 1202 1.1E-7 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 636 775 1.1E-25 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Gene3D G3DSA:3.30.413.10 649 770 3.2E-30 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 562 625 7.4E-13 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 SUPERFAMILY SSF55124 520 644 1.5E-24 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Gene3D G3DSA:3.50.50.60 116 308 4.1E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 682 698 - T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 SUPERFAMILY SSF51905 150 308 7.0E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 SUPERFAMILY SSF56014 637 805 1.31E-46 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00397 Sirohaem Fe-binding site signature 639 657 5.1E-6 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00397 Sirohaem Fe-binding site signature 682 700 5.1E-6 T 06-07-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PIRSF PIRSF037149 1 819 0.0 T 06-07-2017 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 282 4.5E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.0E-14 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 2.0E-14 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.0E-14 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 2.0E-14 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 9 799 2.0E-272 T 06-07-2017 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 SUPERFAMILY SSF51905 6 193 2.13E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Gene3D G3DSA:3.50.50.60 3 115 3.1E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 108 117 1.1E-10 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 1.1E-10 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 236 250 1.1E-10 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 1.1E-10 T 06-07-2017 CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Pfam PF04324 BFD-like [2Fe-2S] binding domain 487 536 2.2E-12 T 06-07-2017 IPR007419 BFD-like [2Fe-2S]-binding domain CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Pfam PF04324 BFD-like [2Fe-2S] binding domain 424 471 4.7E-12 T 06-07-2017 IPR007419 BFD-like [2Fe-2S]-binding domain CDO28_RS28295 11803010264bf7789537f2fdfc5dfdf4 820 Gene3D G3DSA:3.90.480.10 571 648 2.4E-8 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 PRINTS PR01438 Universal stress protein signature 118 140 1.6E-8 T 06-07-2017 IPR006015 Universal stress protein A CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 PRINTS PR01438 Universal stress protein signature 101 113 1.6E-8 T 06-07-2017 IPR006015 Universal stress protein A CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 PRINTS PR01438 Universal stress protein signature 2 20 1.6E-8 T 06-07-2017 IPR006015 Universal stress protein A CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 Pfam PF00582 Universal stress protein family 1 138 2.0E-23 T 06-07-2017 IPR006016 UspA GO:0006950 CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 Gene3D G3DSA:3.40.50.620 2 138 1.6E-24 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS05600 87adcbc1db3ea515e0b0b020a6cb6693 140 SUPERFAMILY SSF52402 1 140 3.1E-24 T 06-07-2017 CDO28_RS06010 e085ad272e0ba2705340124750dc4a47 242 Pfam PF02104 SURF1 family 19 227 3.6E-37 T 06-07-2017 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SUPERFAMILY SSF52540 942 1142 6.37E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SUPERFAMILY SSF52540 1 210 6.37E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1145 21.137 T 06-07-2017 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SUPERFAMILY SSF75553 467 644 5.49E-11 T 06-07-2017 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 Gene3D G3DSA:3.40.50.300 827 828 4.4E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 Gene3D G3DSA:3.40.50.300 1 166 4.4E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 Gene3D G3DSA:3.40.50.300 1007 1145 4.4E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SMART SM00968 507 596 5.7E-5 T 06-07-2017 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 1136 5.2E-59 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SUPERFAMILY SSF52540 308 409 1.95E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05905 abc3c0eee72a6eaa2b4ac56a638bf05c 1153 SUPERFAMILY SSF52540 1 52 1.95E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 9 194 31.375 T 06-07-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 Pfam PF00551 Formyl transferase 8 188 4.9E-59 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 SUPERFAMILY SSF53328 8 203 1.19E-64 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 140 163 - T 06-07-2017 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 198 1.4E-68 T 06-07-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CDO28_RS04580 73df7efe7cad40fab8a1d56b9c82cc81 220 Gene3D G3DSA:3.40.50.170 7 200 7.9E-69 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 Pfam PF07729 FCD domain 93 218 1.6E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 SUPERFAMILY SSF48008 89 224 1.28E-22 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 Gene3D G3DSA:1.10.10.10 7 77 1.6E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 2.6E-22 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 9.8E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 9.8E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 SMART SM00895 93 219 6.1E-15 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 Gene3D G3DSA:1.20.120.530 89 231 1.1E-28 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 SMART SM00345 14 73 3.8E-23 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32735 d5f33ecfce2649b002c20a3396fc20bf 246 SUPERFAMILY SSF46785 1 77 4.12E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07460 ffe3f834684d3d154ed48edc9b867240 121 SMART SM00448 3 116 3.6E-35 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07460 ffe3f834684d3d154ed48edc9b867240 121 Pfam PF00072 Response regulator receiver domain 5 117 2.7E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07460 ffe3f834684d3d154ed48edc9b867240 121 SUPERFAMILY SSF52172 3 120 7.26E-36 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS07460 ffe3f834684d3d154ed48edc9b867240 121 Gene3D G3DSA:3.40.50.2300 2 120 1.2E-36 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 5.4E-23 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.4E-23 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.4E-23 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 5.4E-23 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 5.4E-23 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 SUPERFAMILY SSF55424 318 408 7.28E-16 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Gene3D G3DSA:3.50.50.60 231 316 6.8E-12 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Gene3D G3DSA:3.50.50.60 1 104 1.1E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Pfam PF14759 Reductase C-terminal 323 407 2.2E-11 T 06-07-2017 IPR028202 Reductase, C-terminal CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 2.6E-13 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 2.6E-13 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 2.6E-13 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.6E-13 T 06-07-2017 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 SUPERFAMILY SSF51905 2 190 3.79E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 SUPERFAMILY SSF51905 144 313 1.3E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Gene3D G3DSA:3.50.50.60 105 230 6.0E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Gene3D G3DSA:3.30.390.30 324 408 2.1E-15 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS14555 05606090190d13dd855cfab7b62b26a7 409 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 304 2.0E-60 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS17240 a0c15b690ef46355fb11e322361961b5 134 SUPERFAMILY SSF81442 37 121 3.53E-9 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 Pfam PF07729 FCD domain 108 232 3.4E-25 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 Gene3D G3DSA:1.20.120.530 105 241 1.1E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 80 5.4E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 SMART SM00345 24 83 3.2E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 SUPERFAMILY SSF46785 23 87 2.99E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 SMART SM00895 108 233 1.0E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 6.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 6.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 SUPERFAMILY SSF48008 106 240 1.07E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20855 5ee61e04efa2828da76be0efee08fa7b 244 Gene3D G3DSA:1.10.10.10 24 87 1.4E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 315 333 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 349 3.0E-38 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Gene3D G3DSA:3.50.50.60 7 170 9.6E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Gene3D G3DSA:3.50.50.60 281 321 9.6E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Pfam PF01494 FAD binding domain 7 345 1.2E-82 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 SUPERFAMILY SSF52833 383 496 1.54E-14 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Gene3D G3DSA:3.30.9.10 330 357 4.3E-12 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Gene3D G3DSA:3.30.9.10 171 276 4.3E-12 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 Gene3D G3DSA:3.40.30.20 451 494 3.5E-6 T 06-07-2017 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 SUPERFAMILY SSF51905 8 180 3.04E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18965 9cc550f6b508dbb067b72f76c70c2697 505 SUPERFAMILY SSF51905 270 353 3.04E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 7 449 6.0E-133 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 SUPERFAMILY SSF47323 341 452 3.27E-20 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 21 333 2.3E-112 T 06-07-2017 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 Gene3D G3DSA:3.40.50.620 24 325 1.4E-98 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 SUPERFAMILY SSF52374 8 332 6.48E-88 T 06-07-2017 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 Gene3D G3DSA:1.20.120.640 337 383 9.1E-5 T 06-07-2017 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 7 456 35.841 T 06-07-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 234 255 2.2E-31 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 203 221 2.2E-31 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 30 41 2.2E-31 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDO28_RS04950 a100a03e98b56925b3e25717a6d9daca 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 68 77 2.2E-31 T 06-07-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 20 448 69.945 T 06-07-2017 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 Pfam PF04209 homogentisate 1,2-dioxygenase 21 446 9.0E-220 T 06-07-2017 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 SUPERFAMILY SSF51182 20 448 6.13E-168 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 20 446 1.5E-226 T 06-07-2017 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 Gene3D G3DSA:2.60.120.10 213 238 4.0E-70 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS12405 26859a3b9bca136df40dcda993c86a22 453 Gene3D G3DSA:2.60.120.10 299 416 4.0E-70 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS24145 48fcc5588ed7bb25602ef6a4a91df60f 113 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 9 92 1.3E-29 T 06-07-2017 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 SMART SM00382 28 211 1.9E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Pfam PF00005 ABC transporter 20 161 1.2E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Gene3D G3DSA:2.40.50.140 287 346 1.2E-8 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Gene3D G3DSA:3.40.50.300 4 234 6.7E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 SUPERFAMILY SSF50331 236 361 2.16E-23 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Pfam PF08402 TOBE domain 282 354 2.0E-6 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 SUPERFAMILY SSF52540 4 243 3.78E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Gene3D G3DSA:2.40.50.100 239 286 1.4E-8 T 06-07-2017 CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 Gene3D G3DSA:2.40.50.100 348 362 1.4E-8 T 06-07-2017 CDO28_RS27970 3e7c79f411b19afe1bf3965935956211 362 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS08195 81555e8f12bb9e42147cf6054c60b211 328 SUPERFAMILY SSF51430 1 321 8.51E-78 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS08195 81555e8f12bb9e42147cf6054c60b211 328 Gene3D G3DSA:3.20.20.100 1 317 4.5E-75 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS08195 81555e8f12bb9e42147cf6054c60b211 328 Pfam PF00248 Aldo/keto reductase family 15 316 1.8E-61 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS14295 bf0815449cf32cc978fe7c1d2065b399 109 SUPERFAMILY SSF54862 4 61 1.75E-16 T 06-07-2017 CDO28_RS14295 bf0815449cf32cc978fe7c1d2065b399 109 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 41 52 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS14295 bf0815449cf32cc978fe7c1d2065b399 109 Gene3D G3DSA:3.30.70.20 4 62 2.6E-12 T 06-07-2017 CDO28_RS14295 bf0815449cf32cc978fe7c1d2065b399 109 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS14295 bf0815449cf32cc978fe7c1d2065b399 109 Pfam PF13187 4Fe-4S dicluster domain 9 55 5.6E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 SUPERFAMILY SSF52540 29 288 1.34E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 Gene3D G3DSA:3.40.50.300 31 225 1.6E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 179 196 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 253 265 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 158 170 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 196 215 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 75 90 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 113 127 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 35 49 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00819 CbxX/CfqX superfamily signature 127 146 1.4E-75 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 TIGRFAM TIGR02880 cbbX_cfxQ: CbbX protein 16 299 3.3E-163 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 77 208 7.1E-17 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 285 299 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 89 104 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 245 256 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 260 271 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 146 159 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 30 44 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 PRINTS PR00820 CbxX/CfqX protein signature 48 62 2.5E-53 T 06-07-2017 IPR000470 CbxX/CfqX, monofunctional GO:0005524 CDO28_RS31555 8308961ca2d725c3eb61bff923cc11e8 311 SMART SM00382 72 211 7.6E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32805 a858e609b4538450c0746b19eb16bcf2 204 Gene3D G3DSA:1.10.10.60 3 68 1.3E-20 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32805 a858e609b4538450c0746b19eb16bcf2 204 SUPERFAMILY SSF48498 81 195 1.93E-28 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS32805 a858e609b4538450c0746b19eb16bcf2 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.3E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32805 a858e609b4538450c0746b19eb16bcf2 204 Gene3D G3DSA:1.10.357.10 70 196 1.0E-40 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS32805 a858e609b4538450c0746b19eb16bcf2 204 SUPERFAMILY SSF46689 4 85 8.72E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 Gene3D G3DSA:3.40.1280.10 6 245 1.3E-68 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 SUPERFAMILY SSF75217 77 244 2.05E-43 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 PIRSF PIRSF015601 6 244 1.4E-54 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 Pfam PF04452 RNA methyltransferase 24 239 8.4E-58 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 SUPERFAMILY SSF88697 6 76 7.95E-16 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS06735 f00f98a166e23f90c66d7b4542b10ef9 245 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 7 243 1.9E-39 T 06-07-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 PRINTS PR00061 Ribosomal protein L19 signature 8 37 1.0E-36 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 PRINTS PR00061 Ribosomal protein L19 signature 38 67 1.0E-36 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 PRINTS PR00061 Ribosomal protein L19 signature 92 117 1.0E-36 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 SUPERFAMILY SSF50104 1 128 1.91E-47 T 06-07-2017 IPR008991 Translation protein SH3-like domain CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 1.1E-48 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 06-07-2017 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 31.129 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11105 288471e6357da0bba4c858d29a7c4a71 177 Pfam PF01245 Ribosomal protein L19 2 116 5.2E-49 T 06-07-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS20240 e06369d260ecc6a299458b3b49c472ca 280 Pfam PF13614 AAA domain 8 194 2.1E-29 T 06-07-2017 IPR025669 AAA domain CDO28_RS20240 e06369d260ecc6a299458b3b49c472ca 280 Gene3D G3DSA:3.40.50.300 3 249 3.0E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20240 e06369d260ecc6a299458b3b49c472ca 280 SUPERFAMILY SSF52540 6 214 1.77E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 Gene3D G3DSA:3.30.540.10 1 129 8.5E-40 T 06-07-2017 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 210 224 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 55 71 1.4E-12 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 1.4E-12 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 33 53 1.4E-12 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 1.4E-12 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 255 1.3E-87 T 06-07-2017 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 Gene3D G3DSA:3.40.190.80 154 256 4.4E-34 T 06-07-2017 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 Pfam PF00459 Inositol monophosphatase family 4 238 3.8E-48 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14770 64288aa4750267cd7047b5aed0af19d6 258 SUPERFAMILY SSF56655 1 240 8.12E-67 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:2.20.25.90 259 302 4.2E-18 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.40.50.740 305 382 8.3E-85 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.40.50.740 575 777 8.3E-85 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.10.20.30 14 76 2.5E-9 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 858 885 - T 06-07-2017 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF01568 Molydopterin dinucleotide binding domain 820 924 1.3E-28 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF00384 Molybdopterin oxidoreductase 305 735 3.4E-72 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 101 140 6.0E-17 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SMART SM00926 248 302 2.1E-15 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SUPERFAMILY SSF54292 20 91 1.15E-18 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:2.40.40.20 778 930 4.3E-41 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.40.228.10 383 574 2.1E-58 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SUPERFAMILY SSF54862 93 243 1.3E-37 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF13187 4Fe-4S dicluster domain 177 234 1.5E-6 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 249 301 3.0E-15 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SUPERFAMILY SSF53706 249 778 3.14E-191 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SUPERFAMILY SSF50692 785 929 1.63E-41 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 221 232 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 SMART SM00929 101 141 8.3E-20 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 178 189 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.30.70.20 163 226 2.9E-14 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 PIRSF PIRSF036643 15 958 0.0 T 06-07-2017 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Gene3D G3DSA:3.30.70.20 227 258 3.6E-5 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 94 4.9E-24 T 06-07-2017 CDO28_RS12025 5ee848baca05d3af414e4b375f448e01 959 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 253 928 4.7E-292 T 06-07-2017 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 CDO28_RS24820 ad75c6a174c4175075462a09a79d5b59 222 SUPERFAMILY SSF50341 62 194 6.93E-21 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS24820 ad75c6a174c4175075462a09a79d5b59 222 Gene3D G3DSA:2.40.50.180 104 134 1.8E-4 T 06-07-2017 CDO28_RS24820 ad75c6a174c4175075462a09a79d5b59 222 SMART SM00260 58 192 2.8E-5 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS24820 ad75c6a174c4175075462a09a79d5b59 222 Pfam PF01584 CheW-like domain 66 194 5.6E-20 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 23 1.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 60 80 1.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 25 42 1.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 SUPERFAMILY SSF51735 3 97 1.49E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 4 96 4.2E-16 T 06-07-2017 CDO28_RS29760 215a9840dbb0798099364bc11e9d0b3c 99 Gene3D G3DSA:3.40.50.720 3 97 5.8E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 Gene3D G3DSA:3.30.70.260 251 357 7.9E-24 T 06-07-2017 CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 Gene3D G3DSA:3.40.50.300 14 250 9.7E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 SMART SM00930 279 354 3.3E-22 T 06-07-2017 IPR018449 NIL domain CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 SUPERFAMILY SSF55021 262 357 4.35E-20 T 06-07-2017 CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 Pfam PF09383 NIL domain 282 353 2.5E-17 T 06-07-2017 IPR018449 NIL domain CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 SMART SM00382 44 232 2.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 SUPERFAMILY SSF52540 18 253 6.69E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12655 ab989478451bc35a906e8fe586c626d2 358 Pfam PF00005 ABC transporter 35 183 3.2E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS08030 07db7f2f67a735f10842417a3908f813 344 Gene3D G3DSA:3.40.190.10 26 182 3.0E-32 T 06-07-2017 CDO28_RS08030 07db7f2f67a735f10842417a3908f813 344 SUPERFAMILY SSF53850 19 338 9.23E-69 T 06-07-2017 CDO28_RS08030 07db7f2f67a735f10842417a3908f813 344 Pfam PF12849 PBP superfamily domain 20 309 2.4E-50 T 06-07-2017 IPR024370 PBP domain CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 22 327 1.8E-56 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 Gene3D G3DSA:3.50.50.60 153 344 8.1E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 361 464 8.1E-25 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 Gene3D G3DSA:3.50.50.60 19 152 8.9E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 Gene3D G3DSA:3.30.390.30 345 467 8.8E-32 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 55 65 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PIRSF PIRSF000350 11 447 5.5E-85 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 187 205 1.2E-24 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 290 1.2E-24 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 1.2E-24 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 303 325 1.2E-24 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.2E-24 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 289 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 354 375 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 441 461 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 434 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 187 212 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 22 44 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 54 69 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 318 325 8.6E-44 T 06-07-2017 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 SUPERFAMILY SSF55424 360 468 2.23E-29 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS26790 fc604035e14613bfa09fb147313e2aab 473 SUPERFAMILY SSF51905 16 381 2.2E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS29715 07c4adf6e4d517fa02bc4c70bdc9ba02 278 SUPERFAMILY SSF51182 19 271 2.43E-85 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS29715 07c4adf6e4d517fa02bc4c70bdc9ba02 278 Pfam PF07883 Cupin domain 71 140 6.2E-12 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS29715 07c4adf6e4d517fa02bc4c70bdc9ba02 278 Pfam PF07883 Cupin domain 194 255 3.7E-8 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS29715 07c4adf6e4d517fa02bc4c70bdc9ba02 278 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 5 271 8.5E-120 T 06-07-2017 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 CDO28_RS29715 07c4adf6e4d517fa02bc4c70bdc9ba02 278 Gene3D G3DSA:2.60.120.10 5 270 1.3E-111 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 88 520 7.5E-141 T 06-07-2017 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 67 520 3.7E-136 T 06-07-2017 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 SUPERFAMILY SSF51735 192 279 2.87E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 Pfam PF02397 Bacterial sugar transferase 326 514 6.3E-56 T 06-07-2017 IPR003362 Bacterial sugar transferase CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 Gene3D G3DSA:3.40.50.720 190 268 2.0E-5 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04325 e7006906f12f7700f8ed9f9b63b4e384 520 Pfam PF13727 CoA-binding domain 110 290 5.6E-58 T 06-07-2017 CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 SUPERFAMILY SSF103473 20 208 1.1E-28 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 SUPERFAMILY SSF103473 258 430 1.1E-28 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 SUPERFAMILY SSF103473 490 508 1.1E-28 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 Gene3D G3DSA:1.20.1250.20 49 192 9.3E-15 T 06-07-2017 CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 Gene3D G3DSA:1.20.1250.20 267 431 6.9E-5 T 06-07-2017 CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 Pfam PF07690 Major Facilitator Superfamily 24 420 5.7E-30 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS29785 80757639921261e31ff2ea9e0832a271 550 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 506 7.2E-70 T 06-07-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CDO28_RS21990 0b644bf63f8416c8660e6a2ee993a524 343 SUPERFAMILY SSF47413 22 68 7.32E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS21990 0b644bf63f8416c8660e6a2ee993a524 343 Gene3D G3DSA:1.10.260.40 23 68 2.5E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS34415 2163bcaaaddad8311c1d9e8e4cfc0ca1 249 Pfam PF00589 Phage integrase family 48 229 2.3E-23 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS34415 2163bcaaaddad8311c1d9e8e4cfc0ca1 249 SUPERFAMILY SSF56349 47 234 4.41E-32 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS34415 2163bcaaaddad8311c1d9e8e4cfc0ca1 249 Gene3D G3DSA:1.10.443.10 47 234 3.7E-33 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS30625 afac350d840db85d6ea59054e80b9513 355 SUPERFAMILY SSF53474 31 350 2.38E-38 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30625 afac350d840db85d6ea59054e80b9513 355 Gene3D G3DSA:3.40.50.1820 31 352 3.6E-42 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30625 afac350d840db85d6ea59054e80b9513 355 Pfam PF12146 Serine aminopeptidase, S33 82 333 3.1E-16 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS02225 1a024a04f1aa815a5de214b4f41f261c 195 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 86 173 4.9E-15 T 06-07-2017 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 SMART SM00382 165 308 2.9E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Pfam PF00072 Response regulator receiver domain 7 115 5.9E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Gene3D G3DSA:3.40.50.300 144 317 8.9E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30360 ba073efdef408a81492356cb35158158 460 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 231 246 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 SUPERFAMILY SSF52540 145 378 7.64E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30360 ba073efdef408a81492356cb35158158 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 06-07-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Pfam PF02954 Bacterial regulatory protein, Fis family 398 438 2.0E-5 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Gene3D G3DSA:1.10.8.60 318 368 4.0E-21 T 06-07-2017 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Gene3D G3DSA:3.40.50.2300 5 129 1.4E-34 T 06-07-2017 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 SUPERFAMILY SSF46689 386 441 1.25E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Pfam PF00158 Sigma-54 interaction domain 145 311 9.6E-65 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 SUPERFAMILY SSF52172 5 190 6.83E-40 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS30360 ba073efdef408a81492356cb35158158 460 Gene3D G3DSA:1.10.10.60 369 440 7.8E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30360 ba073efdef408a81492356cb35158158 460 SMART SM00448 5 116 1.2E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 Pfam PF00171 Aldehyde dehydrogenase family 19 477 2.9E-160 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 SUPERFAMILY SSF53720 14 481 1.13E-163 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 4.6E-201 T 06-07-2017 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 Gene3D G3DSA:3.40.309.10 270 458 2.4E-64 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS25650 887f12b22741bcbaf6be0fbc0421bd70 484 Gene3D G3DSA:3.40.605.10 14 269 2.4E-97 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Pfam PF00005 ABC transporter 26 183 2.7E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Pfam PF00005 ABC transporter 329 478 1.2E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 SUPERFAMILY SSF52540 5 255 1.54E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 ProSitePatterns PS00211 ABC transporters family signature. 452 466 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 SUPERFAMILY SSF52540 302 551 9.43E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 SMART SM00382 337 529 1.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 SMART SM00382 34 233 1.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Gene3D G3DSA:3.40.50.300 300 553 4.0E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Gene3D G3DSA:3.40.50.300 4 257 4.7E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 263 1.2E-5 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS22395 c7b383e450ca49d30090b9e3ab172362 616 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 531 567 1.5E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 SUPERFAMILY SSF50465 341 438 6.23E-23 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 PRINTS PR00315 GTP-binding elongation factor signature 95 103 2.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 PRINTS PR00315 GTP-binding elongation factor signature 131 142 2.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 PRINTS PR00315 GTP-binding elongation factor signature 168 177 2.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 PRINTS PR00315 GTP-binding elongation factor signature 34 47 2.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 PRINTS PR00315 GTP-binding elongation factor signature 115 125 2.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 Gene3D G3DSA:2.40.30.10 250 353 1.2E-17 T 06-07-2017 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 SUPERFAMILY SSF52540 19 218 1.02E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 Gene3D G3DSA:3.40.50.300 21 237 7.3E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 88 103 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 Pfam PF00009 Elongation factor Tu GTP binding domain 34 232 1.0E-41 T 06-07-2017 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 33 437 6.9E-191 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 24 479 47.423 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 Gene3D G3DSA:2.40.30.10 354 439 7.1E-4 T 06-07-2017 CDO28_RS05840 ca70916534f8d12d81cf68f30d67ab68 498 SUPERFAMILY SSF50447 250 334 2.5E-19 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS02445 798e570a33b84c6398664feb540929c5 184 Pfam PF13091 PLD-like domain 53 162 9.3E-9 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS02445 798e570a33b84c6398664feb540929c5 184 Gene3D G3DSA:3.30.870.10 42 169 2.5E-11 T 06-07-2017 CDO28_RS02445 798e570a33b84c6398664feb540929c5 184 SUPERFAMILY SSF56024 41 170 2.79E-13 T 06-07-2017 CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 153 670 1.1E-188 T 06-07-2017 CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 Pfam PF00912 Transglycosylase 143 315 1.5E-64 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 SUPERFAMILY SSF53955 131 334 7.03E-75 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 SUPERFAMILY SSF56601 346 679 1.46E-118 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 SUPERFAMILY SSF56601 297 319 1.46E-118 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 Pfam PF00905 Penicillin binding protein transpeptidase domain 408 632 7.6E-31 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 Gene3D G3DSA:3.40.710.10 318 673 2.1E-116 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS09700 28c0304b1c55b72e16ddf8a0e75c1043 767 Gene3D G3DSA:1.10.3810.10 142 317 6.3E-74 T 06-07-2017 CDO28_RS03090 be59d97d2779782f8595839251472982 484 SMART SM00382 159 302 3.5E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS03090 be59d97d2779782f8595839251472982 484 Gene3D G3DSA:3.40.50.300 147 311 3.6E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03090 be59d97d2779782f8595839251472982 484 SUPERFAMILY SSF52540 139 380 1.41E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03090 be59d97d2779782f8595839251472982 484 Gene3D G3DSA:1.10.10.60 405 474 2.4E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03090 be59d97d2779782f8595839251472982 484 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS03090 be59d97d2779782f8595839251472982 484 Pfam PF00072 Response regulator receiver domain 6 114 1.2E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03090 be59d97d2779782f8595839251472982 484 SUPERFAMILY SSF46689 386 475 4.93E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03090 be59d97d2779782f8595839251472982 484 Pfam PF02954 Bacterial regulatory protein, Fis family 433 473 1.5E-13 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03090 be59d97d2779782f8595839251472982 484 SMART SM00448 4 115 1.2E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03090 be59d97d2779782f8595839251472982 484 Gene3D G3DSA:3.40.50.2300 3 146 2.8E-32 T 06-07-2017 CDO28_RS03090 be59d97d2779782f8595839251472982 484 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 06-07-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CDO28_RS03090 be59d97d2779782f8595839251472982 484 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 473 1.7E-211 T 06-07-2017 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 CDO28_RS03090 be59d97d2779782f8595839251472982 484 Gene3D G3DSA:1.10.8.60 312 388 2.3E-23 T 06-07-2017 CDO28_RS03090 be59d97d2779782f8595839251472982 484 Pfam PF00158 Sigma-54 interaction domain 139 305 3.8E-70 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS03090 be59d97d2779782f8595839251472982 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 439 456 8.6E-13 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03090 be59d97d2779782f8595839251472982 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 456 476 8.6E-13 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03090 be59d97d2779782f8595839251472982 484 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS03090 be59d97d2779782f8595839251472982 484 SUPERFAMILY SSF52172 1 183 1.99E-41 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS33590 3a802830bc982571f2e639de717a2aea 324 Gene3D G3DSA:3.40.50.720 2 179 6.4E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33590 3a802830bc982571f2e639de717a2aea 324 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 244 2.1E-51 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS33590 3a802830bc982571f2e639de717a2aea 324 Gene3D G3DSA:3.90.25.10 180 316 1.7E-30 T 06-07-2017 CDO28_RS33590 3a802830bc982571f2e639de717a2aea 324 SUPERFAMILY SSF51735 1 315 2.0E-87 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 3.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 3.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 3.0E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 Gene3D G3DSA:3.30.565.10 324 459 1.9E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 Pfam PF00672 HAMP domain 185 253 3.5E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 459 1.5E-17 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 Gene3D G3DSA:1.10.287.130 247 311 1.4E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 SMART SM00387 353 460 7.6E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 SUPERFAMILY SSF55874 324 459 4.45E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 SUPERFAMILY SSF47384 243 314 1.26E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 SMART SM00388 257 315 3.0E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS15530 ea1e39addef5c7d2acdebd73952e104f 460 SMART SM00304 204 256 0.0091 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS33320 4895148332f3bb6f0d181b32aac5f631 304 SUPERFAMILY SSF53448 28 181 7.76E-10 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33320 4895148332f3bb6f0d181b32aac5f631 304 Pfam PF01697 Glycosyltransferase family 92 31 288 2.3E-44 T 06-07-2017 IPR008166 Glycosyltransferase family 92 CDO28_RS33320 4895148332f3bb6f0d181b32aac5f631 304 Gene3D G3DSA:3.90.550.10 28 139 1.7E-4 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS31590 700172eb701cba938da8d20740f40897 313 SUPERFAMILY SSF46785 5 103 1.5E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31590 700172eb701cba938da8d20740f40897 313 Gene3D G3DSA:1.10.10.10 5 90 7.0E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31590 700172eb701cba938da8d20740f40897 313 Pfam PF03466 LysR substrate binding domain 91 295 5.1E-47 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS31590 700172eb701cba938da8d20740f40897 313 SUPERFAMILY SSF53850 93 299 1.23E-41 T 06-07-2017 CDO28_RS31590 700172eb701cba938da8d20740f40897 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.9E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS31590 700172eb701cba938da8d20740f40897 313 Gene3D G3DSA:3.40.190.10 177 266 5.2E-18 T 06-07-2017 CDO28_RS31590 700172eb701cba938da8d20740f40897 313 Gene3D G3DSA:3.40.190.10 93 176 1.5E-18 T 06-07-2017 CDO28_RS21455 3d274e13ba48d87cb5c66dfe3af4c78e 399 SUPERFAMILY SSF56796 8 393 6.41E-109 T 06-07-2017 CDO28_RS21455 3d274e13ba48d87cb5c66dfe3af4c78e 399 Gene3D G3DSA:3.40.50.1970 7 184 1.3E-49 T 06-07-2017 CDO28_RS21455 3d274e13ba48d87cb5c66dfe3af4c78e 399 Gene3D G3DSA:1.20.1090.10 185 390 1.4E-53 T 06-07-2017 CDO28_RS21455 3d274e13ba48d87cb5c66dfe3af4c78e 399 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 383 5.3E-108 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Gene3D G3DSA:3.30.1490.20 130 201 2.7E-30 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 SUPERFAMILY SSF56059 83 350 1.27E-69 T 06-07-2017 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Gene3D G3DSA:3.30.470.20 204 443 1.2E-94 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-45 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 SUPERFAMILY SSF52440 1 113 1.73E-49 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Gene3D G3DSA:3.40.50.20 1 129 7.3E-53 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 1.0E-216 T 06-07-2017 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Pfam PF02785 Biotin carboxylase C-terminal domain 334 439 1.5E-38 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 320 4.1E-78 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 SUPERFAMILY SSF51246 329 442 3.14E-43 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS03855 4a5806f116a8907ddff65761ca44a8ef 447 SMART SM00878 334 439 1.8E-62 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 Pfam PF00117 Glutamine amidotransferase class-I 5 186 4.6E-39 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 Pfam PF00425 chorismate binding enzyme 415 669 1.0E-90 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 187 1.3E-46 T 06-07-2017 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 Pfam PF04715 Anthranilate synthase component I, N terminal region 238 367 2.3E-20 T 06-07-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 Gene3D G3DSA:3.60.120.10 215 678 8.3E-146 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 SUPERFAMILY SSF56322 221 678 9.94E-131 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 Gene3D G3DSA:3.40.50.880 3 188 4.4E-60 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 SUPERFAMILY SSF52317 3 187 5.63E-50 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 3.0E-12 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00096 Glutamine amidotransferase superfamily signature 49 58 3.0E-12 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 3.0E-12 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 323 673 5.1E-110 T 06-07-2017 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 46 60 4.9E-5 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 4.9E-5 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 165 178 7.7E-29 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 77 88 7.7E-29 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 102 110 7.7E-29 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 49 58 7.7E-29 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 122 134 7.7E-29 T 06-07-2017 CDO28_RS34375 7c2fc92cffa8a2c48708d543a8c8b8c0 685 PRINTS PR00097 Anthranilate synthase component II signature 3 17 7.7E-29 T 06-07-2017 CDO28_RS17530 096ff655b1fd430716bd4e43023eaf9d 94 SUPERFAMILY SSF47598 10 52 1.22E-8 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS17530 096ff655b1fd430716bd4e43023eaf9d 94 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 14 65 5.7E-13 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS17530 096ff655b1fd430716bd4e43023eaf9d 94 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 12 71 4.6E-17 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 SUPERFAMILY SSF53822 78 332 3.85E-46 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 52 1.3E-12 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 Pfam PF13377 Periplasmic binding protein-like domain 176 335 2.8E-28 T 06-07-2017 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 Gene3D G3DSA:3.40.50.2300 78 181 4.5E-17 T 06-07-2017 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 Gene3D G3DSA:1.10.260.40 11 52 5.3E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 SMART SM00354 8 74 3.1E-6 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 Gene3D G3DSA:3.40.50.2300 182 310 2.1E-38 T 06-07-2017 CDO28_RS33165 34ec533fd96550ccb49569992c8017d4 342 SUPERFAMILY SSF47413 8 57 1.66E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 SUPERFAMILY SSF142695 207 363 9.15E-42 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 3 205 37.572 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 PIRSF PIRSF001259 3 366 3.5E-133 T 06-07-2017 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 6 201 2.7E-73 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 Pfam PF00925 GTP cyclohydrolase II 213 362 1.1E-29 T 06-07-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 SUPERFAMILY SSF55821 5 204 1.1E-80 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 10 200 2.3E-84 T 06-07-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS06065 875e520c44e80e40ed3e9a507add76c7 366 Gene3D G3DSA:3.90.870.10 4 210 9.2E-95 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain CDO28_RS06315 70cc3b866440012b340327db16963cf4 644 Pfam PF09972 Predicted membrane protein (DUF2207) 27 440 1.2E-76 T 06-07-2017 IPR018702 Protein of unknown function DUF2207, membrane CDO28_RS06315 70cc3b866440012b340327db16963cf4 644 Pfam PF09972 Predicted membrane protein (DUF2207) 450 564 9.2E-22 T 06-07-2017 IPR018702 Protein of unknown function DUF2207, membrane CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 Gene3D G3DSA:3.50.50.60 343 395 1.7E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 Gene3D G3DSA:3.50.50.60 170 250 1.7E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 Gene3D G3DSA:3.50.50.60 16 117 1.7E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 Pfam PF01266 FAD dependent oxidoreductase 28 379 1.7E-51 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 SUPERFAMILY SSF51905 343 400 2.33E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12290 18750bd7e354e79fcaabe4fdd793ebee 426 SUPERFAMILY SSF51905 27 251 2.33E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 Gene3D G3DSA:1.10.1740.10 3 79 7.3E-22 T 06-07-2017 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 Pfam PF08281 Sigma-70, region 4 104 156 5.0E-17 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 Pfam PF04542 Sigma-70 region 2 16 78 4.5E-14 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 SUPERFAMILY SSF88659 100 160 4.14E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 Gene3D G3DSA:1.10.10.10 102 161 3.9E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 SUPERFAMILY SSF88946 6 91 3.61E-20 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 33 64 - T 06-07-2017 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15035 05b9e6d79ba64321e96cfad3180e388e 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 160 2.3E-24 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS33815 3cabf053119a6f83e2120645932957c1 155 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 111 2.5E-13 T 06-07-2017 CDO28_RS33815 3cabf053119a6f83e2120645932957c1 155 Gene3D G3DSA:3.10.180.10 8 135 1.7E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS33815 3cabf053119a6f83e2120645932957c1 155 SUPERFAMILY SSF54593 9 148 1.49E-16 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 SUPERFAMILY SSF46785 16 108 6.03E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 78 4.3E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 Gene3D G3DSA:1.20.120.530 84 217 4.3E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 SUPERFAMILY SSF48008 87 216 6.02E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 Gene3D G3DSA:1.10.10.10 14 82 1.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 Pfam PF07729 FCD domain 91 214 1.4E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 SMART SM00345 23 81 6.5E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 2.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 2.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22860 1170399bfc05099caf5b6f277fd69301 231 SMART SM00895 91 215 1.5E-16 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 Gene3D G3DSA:3.40.640.10 90 307 6.0E-12 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 Gene3D G3DSA:3.40.640.10 500 742 3.0E-42 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 SUPERFAMILY SSF53383 21 399 6.79E-100 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 SUPERFAMILY SSF53383 922 945 7.43E-98 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 SUPERFAMILY SSF53383 472 880 7.43E-98 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 Pfam PF02347 Glycine cleavage system P-protein 20 444 1.1E-178 T 06-07-2017 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 Pfam PF02347 Glycine cleavage system P-protein 479 732 7.4E-8 T 06-07-2017 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 12 949 25.629 T 06-07-2017 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CDO28_RS02625 9ebf19ef7e728e5a6ff780688a610e95 954 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 21 943 0.0 T 06-07-2017 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Pfam PF00384 Molybdopterin oxidoreductase 12 392 7.4E-22 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Gene3D G3DSA:3.40.50.740 333 483 2.0E-56 T 06-07-2017 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Gene3D G3DSA:2.40.40.20 617 815 6.2E-45 T 06-07-2017 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Pfam PF01568 Molydopterin dinucleotide binding domain 695 810 1.2E-15 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 SUPERFAMILY SSF53706 1 652 1.24E-230 T 06-07-2017 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 815 0.0 T 06-07-2017 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 SUPERFAMILY SSF50692 633 815 5.2E-43 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Gene3D G3DSA:3.40.228.10 164 272 8.1E-78 T 06-07-2017 CDO28_RS20690 bc683db6c37666b6b7edbdbf8256760a 825 Gene3D G3DSA:3.40.228.10 4 120 8.1E-78 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:3.30.1490.20 138 209 1.7E-28 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:1.10.10.60 958 993 3.3E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF89000 839 1015 8.24E-57 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1107 1124 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:3.30.470.20 211 463 3.4E-95 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF52440 3 121 8.63E-40 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:3.10.600.10 994 1068 1.4E-33 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF02785 Biotin carboxylase C-terminal domain 351 458 5.1E-33 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 124 327 2.8E-72 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 161 175 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF00364 Biotin-requiring enzyme 1085 1149 8.4E-17 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF51230 1073 1150 1.2E-19 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:3.40.50.20 3 137 3.9E-45 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF00682 HMGL-like 539 810 1.0E-28 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF51569 531 842 1.61E-82 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 PIRSF PIRSF001594 1 1151 0.0 T 06-07-2017 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:3.20.20.70 516 825 1.1E-134 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF02436 Conserved carboxylase domain 834 1033 1.3E-73 T 06-07-2017 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 295 302 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SMART SM00878 351 458 8.0E-48 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 118 1.3E-37 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 Gene3D G3DSA:2.40.50.100 1075 1150 1.2E-24 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 5 1150 0.0 T 06-07-2017 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF56059 91 359 1.7E-63 T 06-07-2017 CDO28_RS10955 36f6e1b959f30d176e4ac0e6b9fcb414 1152 SUPERFAMILY SSF51246 346 464 2.2E-37 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 Gene3D G3DSA:3.40.190.10 102 187 3.6E-24 T 06-07-2017 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 73 5.9E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 SUPERFAMILY SSF53850 100 302 3.26E-38 T 06-07-2017 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 Gene3D G3DSA:3.40.190.10 188 267 6.2E-18 T 06-07-2017 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 Pfam PF03466 LysR substrate binding domain 98 302 9.7E-35 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 SUPERFAMILY SSF46785 12 91 3.84E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 2.8E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 2.8E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 2.8E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06500 0e54af677110632ce7d356f5f8b9eb13 326 Gene3D G3DSA:1.10.10.10 12 93 1.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 SUPERFAMILY SSF55447 225 325 1.96E-25 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Gene3D G3DSA:3.30.390.50 224 328 1.0E-32 T 06-07-2017 CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 SUPERFAMILY SSF56176 1 220 3.71E-61 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 226 298 5.2E-17 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 SMART SM01092 226 324 1.4E-27 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Gene3D G3DSA:3.30.43.10 1 51 9.2E-23 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 220 5.7E-54 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Gene3D G3DSA:3.30.465.10 157 220 6.2E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS27305 7fac916c44e34476cb253ce62bfcf0b7 328 Gene3D G3DSA:3.30.465.10 56 113 6.2E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 Pfam PF16859 Bacterial transcriptional repressor C-terminal 85 189 7.4E-22 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 Gene3D G3DSA:1.10.10.60 17 61 3.6E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 8.1E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 8.1E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 67 1.2E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 SUPERFAMILY SSF48498 84 199 3.26E-20 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 Gene3D G3DSA:1.10.357.10 65 196 3.8E-25 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS19315 4217d3e7cd7f747960595d4cd74b07fd 201 SUPERFAMILY SSF46689 14 73 5.99E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25890 3c6aba17952ce3ca6ceac0713e0a6239 239 SUPERFAMILY SSF49464 162 237 1.06E-12 T 06-07-2017 IPR008969 Carboxypeptidase-like, regulatory domain CDO28_RS25890 3c6aba17952ce3ca6ceac0713e0a6239 239 Gene3D G3DSA:2.60.40.1120 180 238 1.8E-9 T 06-07-2017 IPR014766 Carboxypeptidase, regulatory domain CDO28_RS25890 3c6aba17952ce3ca6ceac0713e0a6239 239 Gene3D G3DSA:2.60.40.420 97 179 8.0E-4 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS25890 3c6aba17952ce3ca6ceac0713e0a6239 239 SUPERFAMILY SSF49503 90 181 1.22E-9 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS25890 3c6aba17952ce3ca6ceac0713e0a6239 239 Pfam PF13620 Carboxypeptidase regulatory-like domain 186 237 2.7E-8 T 06-07-2017 CDO28_RS32580 492977994385572437391b19eb757aca 164 Gene3D G3DSA:3.60.21.10 1 159 1.0E-42 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS32580 492977994385572437391b19eb757aca 164 SUPERFAMILY SSF56300 1 138 1.12E-13 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 465 6.4E-145 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 06-07-2017 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SMART SM00997 227 386 3.6E-108 T 06-07-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 PIRSF PIRSF001109 1 466 3.8E-188 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 458 4.5E-182 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SUPERFAMILY SSF52283 387 466 4.19E-114 T 06-07-2017 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SUPERFAMILY SSF52283 179 226 4.19E-114 T 06-07-2017 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SUPERFAMILY SSF52283 4 143 4.19E-114 T 06-07-2017 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Gene3D G3DSA:3.40.50.720 229 385 5.4E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 227 386 2.5E-81 T 06-07-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Gene3D G3DSA:3.40.50.1480 5 228 6.3E-147 T 06-07-2017 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Gene3D G3DSA:3.40.50.1480 387 466 6.3E-147 T 06-07-2017 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 249 266 - T 06-07-2017 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SMART SM00996 6 465 0.0 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 458 47.726 T 06-07-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDO28_RS10445 ff8c2063389dee78ec067ebdff4d8e8d 466 SUPERFAMILY SSF51735 227 386 4.75E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 214 32.517 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 Gene3D G3DSA:3.40.50.880 1 214 1.6E-63 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 Pfam PF00117 Glutamine amidotransferase class-I 14 211 6.7E-18 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 213 2.7E-56 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 PIRSF PIRSF000495 1 216 5.2E-63 T 06-07-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDO28_RS10370 d87def9ef5920004e8268da152e32379 216 SUPERFAMILY SSF52317 3 205 8.25E-50 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 1.1E-145 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 SUPERFAMILY SSF51621 2 78 5.93E-89 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 SUPERFAMILY SSF51621 168 339 5.93E-89 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 SUPERFAMILY SSF50800 73 166 9.94E-26 T 06-07-2017 IPR011037 Pyruvate kinase-like, insert domain CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 5.9E-32 T 06-07-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Gene3D G3DSA:3.40.1380.20 325 468 8.3E-45 T 06-07-2017 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Gene3D G3DSA:2.40.33.10 76 165 3.2E-28 T 06-07-2017 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 SUPERFAMILY SSF52935 321 471 9.55E-39 T 06-07-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 4.8E-107 T 06-07-2017 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 311 327 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 242 266 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 215 241 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 62 78 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 188 202 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 292 310 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 PRINTS PR01050 Pyruvate kinase family signature 267 291 7.3E-66 T 06-07-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 213 225 - T 06-07-2017 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Gene3D G3DSA:3.20.20.60 169 324 1.5E-92 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS13170 0df509e4242e5d019078bf21d5b1ef7b 479 Gene3D G3DSA:3.20.20.60 5 75 1.5E-92 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS03490 a5b76f9ce0f2fc2d99d8e84351b402b5 313 Pfam PF00174 Oxidoreductase molybdopterin binding domain 89 246 2.9E-27 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS03490 a5b76f9ce0f2fc2d99d8e84351b402b5 313 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 1 313 60.125 T 06-07-2017 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 CDO28_RS03490 a5b76f9ce0f2fc2d99d8e84351b402b5 313 SUPERFAMILY SSF56524 57 309 6.15E-94 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS03490 a5b76f9ce0f2fc2d99d8e84351b402b5 313 Gene3D G3DSA:3.90.420.10 57 312 3.4E-73 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Pfam PF00310 Glutamine amidotransferases class-II 47 471 1.2E-187 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 SUPERFAMILY SSF56235 47 473 1.45E-157 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Pfam PF01493 GXGXG motif 1301 1487 1.3E-82 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Pfam PF04898 Glutamate synthase central domain 499 786 4.2E-119 T 06-07-2017 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Gene3D G3DSA:3.60.20.10 47 482 3.4E-187 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Gene3D G3DSA:3.20.20.70 895 1265 9.5E-183 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 SUPERFAMILY SSF51395 493 1266 5.7E-268 T 06-07-2017 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Gene3D G3DSA:3.20.20.70 488 836 3.6E-116 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Gene3D G3DSA:2.160.20.60 1275 1571 3.7E-108 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 SUPERFAMILY SSF69336 1270 1486 2.09E-92 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 SUPERFAMILY SSF69336 1515 1563 2.09E-92 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS13060 7a4227aca010d3f55807ea7e4a914cba 1574 Pfam PF01645 Conserved region in glutamate synthase 849 1221 8.8E-157 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CDO28_RS25920 c251f2108e12470dee4ee4b01d153565 100 Pfam PF08770 Sulphur oxidation protein SoxZ 6 91 4.3E-25 T 06-07-2017 IPR014880 Sulphur oxidation protein SoxZ CDO28_RS25920 c251f2108e12470dee4ee4b01d153565 100 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 6 92 1.7E-25 T 06-07-2017 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ CDO28_RS25920 c251f2108e12470dee4ee4b01d153565 100 SUPERFAMILY SSF81296 2 97 1.4E-24 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS25920 c251f2108e12470dee4ee4b01d153565 100 Gene3D G3DSA:2.60.40.10 1 97 4.7E-27 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS20905 fb7f098ff2dc11550e4b244a652bfff0 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 107 3.0E-26 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS20905 fb7f098ff2dc11550e4b244a652bfff0 218 SUPERFAMILY SSF161098 13 204 5.76E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20905 fb7f098ff2dc11550e4b244a652bfff0 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 215 5.2E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20905 fb7f098ff2dc11550e4b244a652bfff0 218 Gene3D G3DSA:1.10.3720.10 13 214 4.7E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 Pfam PF01227 GTP cyclohydrolase I 23 200 1.9E-75 T 06-07-2017 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 Gene3D G3DSA:1.10.286.10 17 68 6.5E-23 T 06-07-2017 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 80 96 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 Gene3D G3DSA:3.30.1130.10 75 201 5.7E-56 T 06-07-2017 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 SUPERFAMILY SSF55620 10 201 1.56E-76 T 06-07-2017 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 128 138 - T 06-07-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 18 201 39.93 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 CDO28_RS03285 3da681c16b085caecab24c13ebf01939 204 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 23 201 3.4E-65 T 06-07-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 CDO28_RS06320 9ef2d06e32a5166e8e68524a7b00f14a 182 Pfam PF04011 LemA family 7 182 2.0E-66 T 06-07-2017 IPR007156 LemA CDO28_RS06320 9ef2d06e32a5166e8e68524a7b00f14a 182 SUPERFAMILY SSF140478 21 170 3.66E-52 T 06-07-2017 IPR023353 LemA-like domain CDO28_RS06320 9ef2d06e32a5166e8e68524a7b00f14a 182 Gene3D G3DSA:1.20.1440.20 10 182 1.8E-63 T 06-07-2017 IPR023353 LemA-like domain CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 SUPERFAMILY SSF52540 324 556 1.56E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 Gene3D G3DSA:1.20.1560.10 15 317 4.7E-37 T 06-07-2017 CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 Pfam PF00664 ABC transporter transmembrane region 26 282 2.6E-13 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 Pfam PF00005 ABC transporter 352 497 4.5E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 17 557 4.9E-203 T 06-07-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 Gene3D G3DSA:3.40.50.300 331 556 1.7E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 SMART SM00382 358 545 5.6E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33400 d85e45077dbad67cf26ed6b478e9ef51 595 SUPERFAMILY SSF90123 14 317 4.45E-40 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 SUPERFAMILY SSF50331 236 361 6.38E-27 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Pfam PF00005 ABC transporter 19 161 1.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 SMART SM00382 28 211 1.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 SUPERFAMILY SSF52540 4 242 9.17E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Gene3D G3DSA:2.40.50.100 239 285 1.3E-8 T 06-07-2017 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Gene3D G3DSA:2.40.50.100 347 361 1.3E-8 T 06-07-2017 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Pfam PF08402 TOBE domain 281 353 2.4E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Gene3D G3DSA:2.40.50.140 286 346 1.8E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17740 ea8e28d5d4616b73da333685a339779b 361 Gene3D G3DSA:3.40.50.300 3 234 1.1E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 SUPERFAMILY SSF51735 112 297 1.54E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 Gene3D G3DSA:3.40.50.720 120 297 7.8E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 153 296 1.9E-49 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 SUPERFAMILY SSF52283 26 139 4.76E-9 T 06-07-2017 CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 Gene3D G3DSA:3.40.50.720 21 119 4.1E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33155 910ff4d1883dc98eef0bf4b1dbdc4bd9 336 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 49 327 2.6E-6 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS05055 13f5a78115f807903b72d1997e6a8933 218 SUPERFAMILY SSF109604 20 218 1.07E-55 T 06-07-2017 CDO28_RS05055 13f5a78115f807903b72d1997e6a8933 218 Pfam PF01966 HD domain 36 137 4.6E-12 T 06-07-2017 IPR006674 HD domain CDO28_RS05055 13f5a78115f807903b72d1997e6a8933 218 Gene3D G3DSA:1.10.3210.10 16 151 1.4E-37 T 06-07-2017 IPR006674 HD domain CDO28_RS05055 13f5a78115f807903b72d1997e6a8933 218 Gene3D G3DSA:1.10.3210.10 190 218 1.4E-37 T 06-07-2017 IPR006674 HD domain CDO28_RS05055 13f5a78115f807903b72d1997e6a8933 218 SMART SM00471 30 147 4.3E-8 T 06-07-2017 IPR003607 HD/PDEase domain CDO28_RS03945 f3ab2589cee1a1b7a33c63152ac3cb4d 383 SUPERFAMILY SSF102405 90 294 2.52E-36 T 06-07-2017 CDO28_RS03945 f3ab2589cee1a1b7a33c63152ac3cb4d 383 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 81 294 7.4E-61 T 06-07-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 CDO28_RS03945 f3ab2589cee1a1b7a33c63152ac3cb4d 383 Gene3D G3DSA:3.40.50.450 121 264 2.7E-5 T 06-07-2017 CDO28_RS03945 f3ab2589cee1a1b7a33c63152ac3cb4d 383 Pfam PF02481 DNA recombination-mediator protein A 84 285 9.9E-66 T 06-07-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 CDO28_RS31700 27f17221d79fa4c81ef51545acbcd767 228 Pfam PF04972 BON domain 143 211 1.1E-19 T 06-07-2017 IPR007055 BON domain CDO28_RS31700 27f17221d79fa4c81ef51545acbcd767 228 SMART SM00749 148 211 1.5E-10 T 06-07-2017 IPR014004 Transport-associated and nodulation domain, bacteria CDO28_RS30395 f70b1e6dd0fc6bb06c766e82d04fb9d5 401 Gene3D G3DSA:1.20.1250.20 221 396 7.8E-10 T 06-07-2017 CDO28_RS30395 f70b1e6dd0fc6bb06c766e82d04fb9d5 401 Gene3D G3DSA:1.20.1250.20 24 205 7.4E-29 T 06-07-2017 CDO28_RS30395 f70b1e6dd0fc6bb06c766e82d04fb9d5 401 SUPERFAMILY SSF103473 23 397 1.18E-53 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS30395 f70b1e6dd0fc6bb06c766e82d04fb9d5 401 Pfam PF07690 Major Facilitator Superfamily 30 351 3.9E-32 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 PIRSF PIRSF000018 13 460 1.5E-171 T 06-07-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 337 415 3.6E-8 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 SUPERFAMILY SSF46626 192 305 5.31E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 Gene3D G3DSA:1.10.760.10 327 421 3.1E-12 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 SUPERFAMILY SSF46626 36 167 3.43E-20 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 Pfam PF00034 Cytochrome c 46 146 7.2E-6 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 SUPERFAMILY SSF46626 330 425 2.22E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 Gene3D G3DSA:1.10.760.10 189 294 6.8E-7 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS32600 b563f77c2df22a77c07e0db9419c1cbb 462 Gene3D G3DSA:1.10.760.10 44 145 1.1E-14 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 Gene3D G3DSA:3.40.50.2300 2 123 2.1E-37 T 06-07-2017 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 Gene3D G3DSA:1.10.10.10 139 238 6.5E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 SUPERFAMILY SSF46894 134 237 3.4E-27 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 SMART SM00862 160 236 8.0E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 Pfam PF00072 Response regulator receiver domain 4 113 5.3E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 SMART SM00448 2 112 1.3E-37 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 236 2.1E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS10415 0c29b73b61ce3900e93ce383af6215bb 240 SUPERFAMILY SSF52172 2 122 9.68E-38 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Gene3D G3DSA:3.30.465.10 259 371 8.1E-38 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 SUPERFAMILY SSF54292 7 96 9.11E-18 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 SMART SM01092 380 481 1.7E-35 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 45 53 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Gene3D G3DSA:1.10.150.120 93 176 7.4E-36 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 SUPERFAMILY SSF55447 376 483 6.67E-34 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Gene3D G3DSA:3.30.43.10 210 258 2.1E-21 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 PIRSF PIRSF036557 5 494 1.4E-201 T 06-07-2017 IPR012175 Xanthine dehydrogenase, small subunit, bacteria CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 381 480 2.0E-32 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Gene3D G3DSA:3.30.390.50 381 481 3.6E-37 T 06-07-2017 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 8 480 2.7E-208 T 06-07-2017 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 SUPERFAMILY SSF47741 104 177 1.7E-32 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 SUPERFAMILY SSF56176 191 372 5.61E-55 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 61 6.8E-5 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 209 372 1.4E-52 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Pfam PF01799 [2Fe-2S] binding domain 92 165 3.4E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS28445 e3ef68691cf73ba2abdfda4a523a4843 495 Gene3D G3DSA:3.10.20.30 6 92 4.1E-26 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Gene3D G3DSA:1.20.272.10 243 341 3.5E-44 T 06-07-2017 CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Gene3D G3DSA:1.10.8.60 158 219 5.3E-7 T 06-07-2017 CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 SUPERFAMILY SSF48019 247 432 1.25E-75 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Pfam PF12002 MgsA AAA+ ATPase C terminal 262 427 4.6E-68 T 06-07-2017 IPR021886 MgsA AAA+ ATPase C-terminal CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 SMART SM00382 52 168 4.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 56 163 9.4E-15 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Pfam PF16193 AAA C-terminal domain 186 261 5.9E-20 T 06-07-2017 IPR032423 AAA ATPase, C-terminal domain CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Gene3D G3DSA:3.40.50.300 14 157 4.9E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 SUPERFAMILY SSF52540 16 228 5.44E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03480 e7143aa2912e8a7386870318e861dc0e 436 Gene3D G3DSA:1.10.3710.10 342 434 1.2E-32 T 06-07-2017 CDO28_RS09460 9683b9e80557971370df019f95631859 122 SUPERFAMILY SSF54593 6 121 3.1E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS09460 9683b9e80557971370df019f95631859 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 115 1.5E-9 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS09460 9683b9e80557971370df019f95631859 122 Gene3D G3DSA:3.10.180.10 3 118 3.6E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS09460 9683b9e80557971370df019f95631859 122 PIRSF PIRSF039020 1 122 5.9E-46 T 06-07-2017 IPR026275 Glyoxalase/bleomycin resistance protein/dioxygenase CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1419 1453 6.1E-4 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 573 624 4.1E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 Pfam PF01345 Domain of unknown function DUF11 561 619 1.7E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 SUPERFAMILY SSF117074 706 783 3.66E-9 T 06-07-2017 CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 Gene3D G3DSA:2.60.40.10 731 784 1.3E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 Gene3D G3DSA:2.60.40.10 471 521 1.2E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 SUPERFAMILY SSF49478 463 524 1.53E-7 T 06-07-2017 CDO28_RS08240 97b01ada190f31fa8af58a34d79a8477 1610 Pfam PF05738 Cna protein B-type domain 475 531 6.5E-6 T 06-07-2017 IPR008454 Collagen-binding surface protein Cna-like, B-type domain CDO28_RS26645 6d14a9e33e5b42d062c948621b770677 342 SUPERFAMILY SSF52540 7 244 2.99E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26645 6d14a9e33e5b42d062c948621b770677 342 Gene3D G3DSA:3.40.50.300 6 236 3.4E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26645 6d14a9e33e5b42d062c948621b770677 342 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26645 6d14a9e33e5b42d062c948621b770677 342 SMART SM00382 31 214 6.8E-20 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26645 6d14a9e33e5b42d062c948621b770677 342 Pfam PF00005 ABC transporter 23 164 1.5E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 SMART SM00829 13 338 3.3E-13 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 Gene3D G3DSA:3.90.180.10 15 171 6.0E-38 T 06-07-2017 IPR011032 GroES-like CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 SUPERFAMILY SSF50129 13 172 9.59E-37 T 06-07-2017 IPR011032 GroES-like CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 131 2.1E-8 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 Pfam PF00107 Zinc-binding dehydrogenase 177 299 5.0E-30 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 SUPERFAMILY SSF51735 143 316 2.3E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14965 4830bdafafb9218d94207472c28a029c 340 Gene3D G3DSA:3.40.50.720 172 287 5.5E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29765 a8b8295e948c5b761cacaca28b1cc50c 78 Pfam PF05199 GMC oxidoreductase 6 69 8.9E-14 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS29765 a8b8295e948c5b761cacaca28b1cc50c 78 Gene3D G3DSA:3.50.50.60 19 76 1.2E-14 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS29765 a8b8295e948c5b761cacaca28b1cc50c 78 SUPERFAMILY SSF51905 18 77 3.67E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 428 42.352 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 427 4.7E-161 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 06-07-2017 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 Pfam PF00815 Histidinol dehydrogenase 23 428 3.6E-169 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PIRSF PIRSF000099 5 430 1.6E-163 T 06-07-2017 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 SUPERFAMILY SSF53720 26 430 1.33E-84 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 Gene3D G3DSA:3.40.50.1980 28 240 1.6E-80 T 06-07-2017 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS07605 2c482edfbe04e87383bd3897becf393d 434 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 1.2E-87 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 173 737 2.5E-173 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 192 736 1.2E-161 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 226 472 6.0E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 558 720 4.1E-29 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 665 690 5.2E-5 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 634 650 5.2E-5 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF81665 196 257 2.22E-15 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF81665 687 709 2.22E-15 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF81665 355 448 2.22E-15 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF56784 452 472 1.53E-42 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF56784 504 734 1.53E-42 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 ProSitePatterns PS01047 Heavy-metal-associated domain. 45 74 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 454 468 1.6E-16 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 304 318 1.6E-16 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 653 1.6E-16 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 657 669 1.6E-16 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 591 1.6E-16 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Gene3D G3DSA:2.70.150.10 213 354 9.7E-18 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Pfam PF00702 haloacid dehalogenase-like hydrolase 450 647 6.1E-26 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Pfam PF00122 E1-E2 ATPase 225 445 2.7E-56 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Gene3D G3DSA:3.40.50.1000 554 702 1.3E-41 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Gene3D G3DSA:3.40.50.1000 427 470 1.3E-41 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF81653 261 354 6.67E-20 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 456 462 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 222 736 6.4E-108 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 Gene3D G3DSA:3.30.70.100 37 112 6.2E-15 T 06-07-2017 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 SUPERFAMILY SSF55008 36 114 2.09E-12 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS22610 ca2ef5131951072215903338525c5b65 759 ProSitePatterns PS01229 Hypothetical cof family signature 2. 634 656 - T 06-07-2017 CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 6.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 6.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 6.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 Gene3D G3DSA:3.40.50.720 4 244 4.0E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 6.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 242 1.3E-54 T 06-07-2017 CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 SUPERFAMILY SSF51735 5 243 1.92E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26870 d28d0a5b7f4b4f2ff9e3fe39dc278630 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS31970 36eaf0b51b369f7541e97857a64d83a5 192 Gene3D G3DSA:1.20.1290.10 155 189 3.9E-28 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS31970 36eaf0b51b369f7541e97857a64d83a5 192 Gene3D G3DSA:1.20.1290.10 14 103 3.9E-28 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS31970 36eaf0b51b369f7541e97857a64d83a5 192 SUPERFAMILY SSF69118 12 188 3.21E-37 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS31970 36eaf0b51b369f7541e97857a64d83a5 192 Pfam PF02627 Carboxymuconolactone decarboxylase family 58 124 2.6E-10 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS31970 36eaf0b51b369f7541e97857a64d83a5 192 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 17 191 1.5E-69 T 06-07-2017 IPR010195 Uncharacterised peroxidase-related CDO28_RS07695 455d9db0c79286625886583991a4e07f 471 SUPERFAMILY SSF53383 61 449 4.44E-105 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS07695 455d9db0c79286625886583991a4e07f 471 Pfam PF00155 Aminotransferase class I and II 98 439 9.9E-50 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS07695 455d9db0c79286625886583991a4e07f 471 Gene3D G3DSA:3.90.1150.10 334 440 2.1E-19 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS07695 455d9db0c79286625886583991a4e07f 471 Gene3D G3DSA:3.40.640.10 116 333 7.6E-83 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22805 409789a1c37b61e6e7a57d890df4e5ce 553 Pfam PF00884 Sulfatase 151 461 1.2E-8 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS22805 409789a1c37b61e6e7a57d890df4e5ce 553 SUPERFAMILY SSF53649 327 520 1.64E-5 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS22805 409789a1c37b61e6e7a57d890df4e5ce 553 SUPERFAMILY SSF53649 234 292 1.64E-5 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS28220 16f064d35846ac1007370673fe2ee43b 270 Gene3D G3DSA:1.10.3720.10 2 257 3.2E-65 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28220 16f064d35846ac1007370673fe2ee43b 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 259 6.6E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28220 16f064d35846ac1007370673fe2ee43b 270 SUPERFAMILY SSF161098 2 270 1.03E-72 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30130 76683ed20380553cc2c40da25d3aafc3 256 Gene3D G3DSA:3.40.50.300 12 217 1.0E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30130 76683ed20380553cc2c40da25d3aafc3 256 SUPERFAMILY SSF52540 13 247 1.08E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30130 76683ed20380553cc2c40da25d3aafc3 256 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30130 76683ed20380553cc2c40da25d3aafc3 256 Pfam PF00005 ABC transporter 31 170 6.3E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30130 76683ed20380553cc2c40da25d3aafc3 256 SMART SM00382 40 220 5.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02700 3555d1b2b3d7c40fe4eaa6090887800d 256 Gene3D G3DSA:3.40.1210.10 1 252 1.0E-79 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 CDO28_RS02700 3555d1b2b3d7c40fe4eaa6090887800d 256 Pfam PF01975 Survival protein SurE 3 184 2.1E-51 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 CDO28_RS02700 3555d1b2b3d7c40fe4eaa6090887800d 256 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 238 9.7E-64 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 CDO28_RS02700 3555d1b2b3d7c40fe4eaa6090887800d 256 SUPERFAMILY SSF64167 1 251 1.7E-78 T 06-07-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 CDO28_RS02700 3555d1b2b3d7c40fe4eaa6090887800d 256 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 255 35.492 T 06-07-2017 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:3.40.50.300 4 208 1.7E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:2.40.30.10 297 389 9.3E-45 T 06-07-2017 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF50465 299 391 5.18E-35 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF50447 202 298 6.09E-30 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 144 4.7E-16 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 3.0E-57 T 06-07-2017 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF52540 6 216 6.18E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 8.3E-33 T 06-07-2017 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 5.9E-15 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:2.40.30.10 209 295 7.2E-37 T 06-07-2017 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.724 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 391 4.9E-222 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03720 40c745859eb53df57c3e0ebe08c0e202 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:3.40.50.300 4 208 1.7E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:2.40.30.10 297 389 9.3E-45 T 06-07-2017 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF50465 299 391 5.18E-35 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF50447 202 298 6.09E-30 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.3E-24 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 144 4.7E-16 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 3.0E-57 T 06-07-2017 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 SUPERFAMILY SSF52540 6 216 6.18E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 8.3E-33 T 06-07-2017 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 5.9E-15 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Gene3D G3DSA:2.40.30.10 209 295 7.2E-37 T 06-07-2017 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.724 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 391 4.9E-222 T 06-07-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS03640 40c745859eb53df57c3e0ebe08c0e202 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS22880 c5f4d415cd0037a57c24eee83faadbcf 311 SMART SM00903 15 158 9.0E-58 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS22880 c5f4d415cd0037a57c24eee83faadbcf 311 Gene3D G3DSA:2.30.110.10 3 157 1.8E-56 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS22880 c5f4d415cd0037a57c24eee83faadbcf 311 Pfam PF01613 Flavin reductase like domain 16 157 3.5E-35 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS22880 c5f4d415cd0037a57c24eee83faadbcf 311 SUPERFAMILY SSF50475 6 158 1.96E-48 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS10840 f3f48133e504c0c02890cf748954b0ba 259 Gene3D G3DSA:3.90.226.10 2 252 1.2E-75 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS10840 f3f48133e504c0c02890cf748954b0ba 259 SUPERFAMILY SSF52096 3 258 8.9E-76 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS10840 f3f48133e504c0c02890cf748954b0ba 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 257 3.7E-51 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 349 41.76 T 06-07-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 Pfam PF02222 ATP-grasp domain 110 278 2.6E-53 T 06-07-2017 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 SUPERFAMILY SSF52440 2 96 2.73E-28 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 SUPERFAMILY SSF56059 99 298 2.98E-62 T 06-07-2017 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 SUPERFAMILY SSF51246 302 348 1.1E-12 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 Gene3D G3DSA:3.30.1490.20 114 178 5.2E-18 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 Gene3D G3DSA:3.30.470.20 179 346 1.6E-66 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 Gene3D G3DSA:3.40.50.20 1 107 2.6E-38 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS13185 4bf522a98eeddea670998978054316d3 349 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 346 2.4E-115 T 06-07-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CDO28_RS29450 bf94edaeb0049985aee394f4c19e2242 80 Pfam PF01850 PIN domain 8 76 2.1E-5 T 06-07-2017 IPR002716 PIN domain CDO28_RS29450 bf94edaeb0049985aee394f4c19e2242 80 Gene3D G3DSA:3.40.50.1010 28 80 7.9E-11 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS29450 bf94edaeb0049985aee394f4c19e2242 80 SUPERFAMILY SSF88723 3 80 1.93E-13 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS18380 840ee026a7277bc3b8d51c47795bc18a 334 Pfam PF01464 Transglycosylase SLT domain 136 237 6.8E-23 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS18380 840ee026a7277bc3b8d51c47795bc18a 334 Gene3D G3DSA:1.10.530.10 129 254 3.0E-39 T 06-07-2017 CDO28_RS18380 840ee026a7277bc3b8d51c47795bc18a 334 SUPERFAMILY SSF53955 118 253 3.44E-38 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 ProSitePatterns PS00211 ABC transporters family signature. 851 865 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.40.50.300 842 964 3.1E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.40.50.300 500 617 4.9E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.40.50.300 3 54 4.9E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.40.50.300 632 690 3.1E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Pfam PF00005 ABC transporter 831 881 4.3E-5 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 SUPERFAMILY SSF52540 453 591 5.54E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 SUPERFAMILY SSF52540 6 207 5.54E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.30.1490.20 203 242 2.2E-25 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:3.30.1490.20 133 156 2.2E-25 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:1.20.1580.10 272 305 2.0E-52 T 06-07-2017 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:1.20.1580.10 94 132 2.0E-52 T 06-07-2017 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:1.20.1580.10 427 499 2.0E-52 T 06-07-2017 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 SUPERFAMILY SSF52540 639 931 3.95E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 945 0.0 T 06-07-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:1.20.1580.10 715 841 1.7E-52 T 06-07-2017 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Hamap MF_00205 UvrABC system protein A [uvrA]. 4 961 22.605 T 06-07-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS02405 2e247708eb807b125c753e85cdeab77f 973 Gene3D G3DSA:1.10.8.280 307 426 3.7E-41 T 06-07-2017 CDO28_RS15945 fee440550297ee91cabac7621e3e0eb8 134 Gene3D G3DSA:3.30.2130.10 1 131 4.9E-53 T 06-07-2017 CDO28_RS15945 fee440550297ee91cabac7621e3e0eb8 134 SUPERFAMILY SSF55021 70 130 4.64E-20 T 06-07-2017 CDO28_RS15945 fee440550297ee91cabac7621e3e0eb8 134 Pfam PF10000 ACT domain 2 69 3.4E-25 T 06-07-2017 IPR018717 Domain of unknown function DUF2241 CDO28_RS15945 fee440550297ee91cabac7621e3e0eb8 134 Pfam PF13840 ACT domain 72 127 1.8E-14 T 06-07-2017 IPR027795 GATS-like ACT domain CDO28_RS15945 fee440550297ee91cabac7621e3e0eb8 134 SUPERFAMILY SSF55021 2 66 2.33E-19 T 06-07-2017 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 Gene3D G3DSA:1.10.10.10 14 96 7.5E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 5.6E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 Pfam PF03466 LysR substrate binding domain 98 288 1.6E-27 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 SUPERFAMILY SSF53850 100 294 1.72E-25 T 06-07-2017 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 4.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 4.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 4.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 Gene3D G3DSA:3.40.190.10 100 179 3.1E-13 T 06-07-2017 CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 SUPERFAMILY SSF46785 10 122 2.18E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29870 182d5f0aad5fd4a9fb8c8187a45b811c 301 Gene3D G3DSA:3.40.190.10 180 251 1.3E-7 T 06-07-2017 CDO28_RS12680 1e6e357ad092027cc8c923631ddc0f9f 157 SUPERFAMILY SSF55154 1 149 7.03E-38 T 06-07-2017 IPR033469 CYTH-like domain Reactome: R-HSA-196819 CDO28_RS12680 1e6e357ad092027cc8c923631ddc0f9f 157 PIRSF PIRSF016487 1 156 1.0E-62 T 06-07-2017 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like CDO28_RS12680 1e6e357ad092027cc8c923631ddc0f9f 157 Pfam PF01928 CYTH domain 3 136 1.4E-15 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 CDO28_RS12680 1e6e357ad092027cc8c923631ddc0f9f 157 Gene3D G3DSA:2.40.320.10 1 150 4.2E-50 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 CDO28_RS12680 1e6e357ad092027cc8c923631ddc0f9f 157 SMART SM01118 2 149 6.3E-16 T 06-07-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 CDO28_RS12910 13013cc1186ab040fc21f1d5350071df 292 SMART SM00460 176 247 1.0E-16 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS12910 13013cc1186ab040fc21f1d5350071df 292 SUPERFAMILY SSF54001 46 289 2.8E-50 T 06-07-2017 CDO28_RS12910 13013cc1186ab040fc21f1d5350071df 292 Pfam PF01841 Transglutaminase-like superfamily 133 245 1.4E-21 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS12910 13013cc1186ab040fc21f1d5350071df 292 Gene3D G3DSA:3.90.260.10 159 249 3.5E-14 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS12910 13013cc1186ab040fc21f1d5350071df 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 83 4.9E-15 T 06-07-2017 IPR013589 Bacterial transglutaminase-like, N-terminal CDO28_RS06530 258cdd3e990c364e7211b45e499b0c62 346 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 321 3.1E-84 T 06-07-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 CDO28_RS06530 258cdd3e990c364e7211b45e499b0c62 346 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 4 336 33.502 T 06-07-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 CDO28_RS06530 258cdd3e990c364e7211b45e499b0c62 346 SUPERFAMILY SSF52540 45 149 2.04E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06530 258cdd3e990c364e7211b45e499b0c62 346 Gene3D G3DSA:3.40.50.300 44 142 3.5E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06530 258cdd3e990c364e7211b45e499b0c62 346 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 18 296 4.8E-55 T 06-07-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.078 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.2E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 SUPERFAMILY SSF47336 2 76 5.76E-23 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 73 1.0E-12 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 Gene3D G3DSA:1.10.1200.10 3 76 2.0E-32 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS04790 acdd7c651a375f4957df5dbede9e39e6 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 3.2E-32 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 SMART SM00419 153 202 1.4E-14 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 Pfam PF00027 Cyclic nucleotide-binding domain 30 107 1.1E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 SMART SM00100 1 128 2.5E-11 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 159 175 6.3E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 175 190 6.3E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 Pfam PF13545 Crp-like helix-turn-helix domain 138 208 4.6E-20 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 SUPERFAMILY SSF46785 137 210 2.9E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 ProSitePatterns PS00042 Crp-type HTH domain signature. 161 184 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 SUPERFAMILY SSF51206 28 129 1.83E-20 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 Gene3D G3DSA:1.10.10.10 141 209 5.2E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22755 efa6bc65dfabea3b14226fe415c6b380 211 Gene3D G3DSA:2.60.120.10 30 140 3.4E-15 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Pfam PF07648 Kazal-type serine protease inhibitor domain 96 126 0.0024 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Pfam PF07648 Kazal-type serine protease inhibitor domain 47 75 0.0032 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Pfam PF07648 Kazal-type serine protease inhibitor domain 146 174 0.014 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SMART SM00280 135 183 0.0093 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SMART SM00280 91 133 0.032 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SMART SM00280 42 84 0.0026 T 06-07-2017 IPR002350 Kazal domain GO:0005515 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SUPERFAMILY SSF100895 143 183 4.99E-8 T 06-07-2017 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SUPERFAMILY SSF100895 94 134 2.08E-7 T 06-07-2017 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 SUPERFAMILY SSF100895 44 86 9.43E-9 T 06-07-2017 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Gene3D G3DSA:3.30.60.30 94 134 1.4E-10 T 06-07-2017 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Gene3D G3DSA:3.30.60.30 44 86 3.5E-12 T 06-07-2017 CDO28_RS18620 5fbf699517437b4899ec5743ad4b11d2 184 Gene3D G3DSA:3.30.60.30 143 184 1.5E-11 T 06-07-2017 CDO28_RS11165 bcc32d5c687539229f6f1c9449d3db03 202 Pfam PF08534 Redoxin 81 184 7.9E-14 T 06-07-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CDO28_RS11165 bcc32d5c687539229f6f1c9449d3db03 202 SUPERFAMILY SSF52833 79 197 5.46E-32 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11165 bcc32d5c687539229f6f1c9449d3db03 202 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 23 197 8.5E-58 T 06-07-2017 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 CDO28_RS11165 bcc32d5c687539229f6f1c9449d3db03 202 Gene3D G3DSA:3.40.30.10 25 197 2.9E-37 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11165 bcc32d5c687539229f6f1c9449d3db03 202 ProSitePatterns PS00194 Thioredoxin family active site. 90 108 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 SUPERFAMILY SSF103025 607 890 7.22E-95 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 295 1.9E-9 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 194 1.9E-9 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 424 1.9E-9 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:2.40.30.110 903 996 4.9E-22 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 192 4.3E-10 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 409 425 4.3E-10 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 301 4.3E-10 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.30.1360.120 608 667 1.9E-30 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.30.1360.120 762 856 1.9E-30 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 172 432 2.7E-13 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 102 4.1E-26 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 PIRSF PIRSF037980 1 997 0.0 T 06-07-2017 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 SUPERFAMILY SSF51905 144 480 3.67E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 886 985 2.2E-15 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.30.70.1400 668 747 1.4E-22 T 06-07-2017 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 SUPERFAMILY SSF101790 899 994 6.05E-21 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 4 997 0.0 T 06-07-2017 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.50.50.60 324 417 1.6E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.50.50.60 429 480 1.4E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Gene3D G3DSA:3.50.50.60 170 317 1.4E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12850 07b8d93ef34009b4d222b1a946926a56 997 Pfam PF01571 Aminomethyltransferase folate-binding domain 614 879 7.8E-74 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS04300 6f7736e8239942f72ddce309b9fe6ad0 216 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS04300 6f7736e8239942f72ddce309b9fe6ad0 216 Gene3D G3DSA:2.160.10.10 50 213 6.6E-49 T 06-07-2017 CDO28_RS04300 6f7736e8239942f72ddce309b9fe6ad0 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 156 5.8E-10 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS04300 6f7736e8239942f72ddce309b9fe6ad0 216 SUPERFAMILY SSF51161 53 212 1.66E-44 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 Pfam PF07593 ASPIC and UnbV 545 600 6.2E-10 T 06-07-2017 IPR011519 ASPIC/UnbV CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 Gene3D G3DSA:2.130.10.130 237 414 2.1E-10 T 06-07-2017 CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 Gene3D G3DSA:2.130.10.130 74 214 1.8E-7 T 06-07-2017 CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 SUPERFAMILY SSF69318 66 421 6.54E-50 T 06-07-2017 CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 SUPERFAMILY SSF69318 456 513 6.54E-50 T 06-07-2017 CDO28_RS20145 7a1105f876c2ff0ab135ce4187112bab 633 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 279 353 2.5E-10 T 06-07-2017 CDO28_RS03460 a8c3d61ba934aa1f1739f12193c50338 330 Pfam PF00849 RNA pseudouridylate synthase 104 257 7.4E-37 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS03460 a8c3d61ba934aa1f1739f12193c50338 330 SUPERFAMILY SSF55174 15 67 1.88E-7 T 06-07-2017 CDO28_RS03460 a8c3d61ba934aa1f1739f12193c50338 330 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 315 4.8E-63 T 06-07-2017 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS03460 a8c3d61ba934aa1f1739f12193c50338 330 SUPERFAMILY SSF55120 93 323 2.56E-61 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS03460 a8c3d61ba934aa1f1739f12193c50338 330 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 143 157 - T 06-07-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 SUPERFAMILY SSF53822 66 337 3.73E-70 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 06-07-2017 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 SUPERFAMILY SSF47413 6 65 5.34E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 9.2E-15 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 Gene3D G3DSA:3.40.50.2300 59 175 7.2E-35 T 06-07-2017 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 Pfam PF13377 Periplasmic binding protein-like domain 172 333 2.7E-37 T 06-07-2017 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 Gene3D G3DSA:1.10.260.40 7 58 1.6E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 Gene3D G3DSA:3.40.50.2300 176 313 3.6E-48 T 06-07-2017 CDO28_RS29880 f7fa93aa1d0cfd48d581fb28655e911d 341 SMART SM00354 6 76 2.7E-25 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Gene3D G3DSA:3.40.50.300 134 419 7.2E-109 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 162 366 3.4E-23 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SUPERFAMILY SSF52540 93 374 8.89E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Pfam PF07498 Rho termination factor, N-terminal domain 8 49 1.0E-17 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Pfam PF07497 Rho termination factor, RNA-binding domain 55 128 1.1E-30 T 06-07-2017 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SUPERFAMILY SSF50249 51 128 1.94E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 421 249.104 T 06-07-2017 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SMART SM00382 173 358 2.5E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SMART SM00357 55 121 3.3E-18 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Gene3D G3DSA:2.40.50.140 52 120 3.5E-34 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SUPERFAMILY SSF68912 4 48 3.06E-12 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 Gene3D G3DSA:1.10.720.10 4 49 1.2E-21 T 06-07-2017 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 SMART SM00959 8 50 1.0E-18 T 06-07-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 CDO28_RS10645 7d73a3fa5b34227286647515d38bd1f7 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 420 1.4E-215 T 06-07-2017 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CDO28_RS29510 196599abf05c410314e744f8534e34a6 271 Gene3D G3DSA:3.40.50.300 1 246 2.0E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29510 196599abf05c410314e744f8534e34a6 271 SUPERFAMILY SSF52540 1 256 8.07E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29510 196599abf05c410314e744f8534e34a6 271 PIRSF PIRSF003092 1 271 5.9E-86 T 06-07-2017 IPR025501 ATP binding protein MinD CDO28_RS29510 196599abf05c410314e744f8534e34a6 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 266 3.4E-104 T 06-07-2017 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 CDO28_RS29510 196599abf05c410314e744f8534e34a6 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 183 3.9E-29 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS14260 7f780d643c7310b82bca97d12f03f8b4 217 SUPERFAMILY SSF52499 11 215 1.57E-46 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS14260 7f780d643c7310b82bca97d12f03f8b4 217 Gene3D G3DSA:3.40.50.850 8 212 9.7E-53 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS14260 7f780d643c7310b82bca97d12f03f8b4 217 Pfam PF00857 Isochorismatase family 19 208 2.8E-34 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Pfam PF02503 Polyphosphate kinase middle domain 149 344 3.5E-58 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 SUPERFAMILY SSF56024 341 518 2.0E-57 T 06-07-2017 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Hamap MF_00347 Polyphosphate kinase [ppk]. 32 711 30.965 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Pfam PF13090 Polyphosphate kinase C-terminal domain 355 707 1.7E-150 T 06-07-2017 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Gene3D G3DSA:3.30.1840.10 137 323 1.5E-59 T 06-07-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Gene3D G3DSA:3.30.870.10 524 708 2.9E-70 T 06-07-2017 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 SUPERFAMILY SSF140356 32 133 1.19E-33 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 PIRSF PIRSF015589 8 724 5.4E-266 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Gene3D G3DSA:3.30.870.10 341 519 1.5E-77 T 06-07-2017 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 SUPERFAMILY SSF143724 137 336 5.69E-59 T 06-07-2017 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 Pfam PF13089 Polyphosphate kinase N-terminal domain 35 139 4.6E-33 T 06-07-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 SUPERFAMILY SSF56024 524 708 1.53E-68 T 06-07-2017 CDO28_RS04560 50009408a80213762cdf8dbd16c6629f 736 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 34 709 1.8E-283 T 06-07-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Pfam PF00149 Calcineurin-like phosphoesterase 28 248 3.9E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Gene3D G3DSA:3.10.350.10 578 627 9.5E-7 T 06-07-2017 IPR018392 LysM domain CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Gene3D G3DSA:3.90.780.10 336 533 1.5E-58 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Gene3D G3DSA:3.60.21.10 24 332 6.6E-96 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13105 5305c97130893519acf9767b4249284b 628 ProSitePatterns PS00786 5'-nucleotidase signature 2. 115 126 - T 06-07-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 SMART SM00257 579 626 5.6E-7 T 06-07-2017 IPR018392 LysM domain CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 470 489 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 273 293 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 393 416 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 212 229 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 231 254 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 PRINTS PR01607 Apyrase family signature 26 44 6.5E-39 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 SUPERFAMILY SSF56300 26 331 3.42E-87 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Pfam PF02872 5'-nucleotidase, C-terminal domain 336 496 8.8E-44 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 SUPERFAMILY SSF55816 334 532 2.49E-63 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 ProSitePatterns PS00785 5'-nucleotidase signature 1. 28 40 - T 06-07-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS13105 5305c97130893519acf9767b4249284b 628 Pfam PF01476 LysM domain 580 626 3.7E-8 T 06-07-2017 IPR018392 LysM domain CDO28_RS28010 5ec946789d32bd38e367294fbd1e5d2d 246 Pfam PF00005 ABC transporter 20 172 1.7E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28010 5ec946789d32bd38e367294fbd1e5d2d 246 Gene3D G3DSA:3.40.50.300 3 227 1.9E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28010 5ec946789d32bd38e367294fbd1e5d2d 246 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28010 5ec946789d32bd38e367294fbd1e5d2d 246 SMART SM00382 28 220 7.2E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28010 5ec946789d32bd38e367294fbd1e5d2d 246 SUPERFAMILY SSF52540 3 227 7.67E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06690 32fffb621385a5ae684f130bc214befc 231 Pfam PF03734 L,D-transpeptidase catalytic domain 70 205 8.3E-15 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS06690 32fffb621385a5ae684f130bc214befc 231 Gene3D G3DSA:2.40.440.10 64 206 2.1E-34 T 06-07-2017 CDO28_RS06690 32fffb621385a5ae684f130bc214befc 231 SUPERFAMILY SSF141523 144 206 5.49E-32 T 06-07-2017 CDO28_RS06690 32fffb621385a5ae684f130bc214befc 231 SUPERFAMILY SSF141523 64 116 5.49E-32 T 06-07-2017 CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Gene3D G3DSA:1.10.101.10 1160 1215 7.6E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Gene3D G3DSA:1.25.40.10 950 1117 1.0E-49 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SUPERFAMILY SSF81901 950 1104 4.97E-34 T 06-07-2017 CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Pfam PF01471 Putative peptidoglycan binding domain 1162 1208 2.9E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SMART SM00671 993 1028 1.0E-6 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SMART SM00671 1065 1100 1.0E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SMART SM00671 957 992 0.0025 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SMART SM00671 1029 1064 1.4E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Pfam PF08238 Sel1 repeat 995 1028 8.9E-6 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Pfam PF08238 Sel1 repeat 1029 1063 8.4E-5 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Pfam PF08238 Sel1 repeat 964 991 2.0E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 Pfam PF08238 Sel1 repeat 1066 1100 0.007 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS07900 5a23da6046e9177200eea0f82977ad6e 1220 SUPERFAMILY SSF47090 1160 1215 5.76E-12 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS15775 ced19c8237e125c31ab7026217c68170 364 Pfam PF01070 FMN-dependent dehydrogenase 26 345 7.7E-97 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 CDO28_RS15775 ced19c8237e125c31ab7026217c68170 364 PIRSF PIRSF000138 2 349 1.1E-99 T 06-07-2017 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 CDO28_RS15775 ced19c8237e125c31ab7026217c68170 364 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 243 249 - T 06-07-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 CDO28_RS15775 ced19c8237e125c31ab7026217c68170 364 SUPERFAMILY SSF51395 19 345 2.32E-77 T 06-07-2017 CDO28_RS15775 ced19c8237e125c31ab7026217c68170 364 Gene3D G3DSA:3.20.20.70 18 346 2.3E-104 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 SUPERFAMILY SSF46689 5 85 1.7E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 Pfam PF13977 Bacterial transcriptional repressor 82 190 8.4E-24 T 06-07-2017 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 Gene3D G3DSA:1.10.357.10 7 191 1.1E-42 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 1.4E-13 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 4 190 1.2E-71 T 06-07-2017 IPR017757 Transcriptional repressor BetI CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 SUPERFAMILY SSF48498 80 189 1.27E-16 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.5E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.5E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25265 3af124756f31bd229ed5dcaef2900fd7 203 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 196 66.304 T 06-07-2017 IPR017757 Transcriptional repressor BetI CDO28_RS28160 906050ca8f7079783337a71c3d4f4617 330 Pfam PF00535 Glycosyl transferase family 2 13 180 2.4E-28 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS28160 906050ca8f7079783337a71c3d4f4617 330 Gene3D G3DSA:3.90.550.10 13 218 5.6E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28160 906050ca8f7079783337a71c3d4f4617 330 SUPERFAMILY SSF53448 13 246 9.38E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 SUPERFAMILY SSF53850 11 267 1.52E-52 T 06-07-2017 CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 SMART SM00062 38 267 2.3E-48 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 Gene3D G3DSA:3.40.190.10 119 218 2.2E-15 T 06-07-2017 CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 Gene3D G3DSA:3.40.190.10 36 118 4.1E-29 T 06-07-2017 CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 Gene3D G3DSA:3.40.190.10 223 269 4.1E-29 T 06-07-2017 CDO28_RS26325 7c6f0d373eefa5f10ac76c3b663af3a0 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 265 1.2E-44 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS26155 9b407f1f912b7fa64c5b406356eff4e7 278 Pfam PF04909 Amidohydrolase 3 277 4.7E-47 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS26155 9b407f1f912b7fa64c5b406356eff4e7 278 SUPERFAMILY SSF51556 2 277 7.4E-64 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS26155 9b407f1f912b7fa64c5b406356eff4e7 278 Gene3D G3DSA:3.20.20.140 2 277 9.5E-63 T 06-07-2017 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 Gene3D G3DSA:3.40.190.10 102 185 1.4E-23 T 06-07-2017 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 8.8E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 Gene3D G3DSA:3.40.190.10 186 266 8.6E-10 T 06-07-2017 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 SUPERFAMILY SSF53850 100 302 4.16E-30 T 06-07-2017 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 Gene3D G3DSA:1.10.10.10 8 93 3.9E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 SUPERFAMILY SSF46785 12 94 7.18E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 Pfam PF03466 LysR substrate binding domain 99 300 1.1E-26 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28470 ddc21223bedfc06a16d45f94bf30b14b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 10 244 1.2E-55 T 06-07-2017 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 Pfam PF01311 Bacterial export proteins, family 1 10 243 1.6E-54 T 06-07-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 4.2E-18 T 06-07-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 4.2E-18 T 06-07-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 4.2E-18 T 06-07-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CDO28_RS07200 7fbc5efb037244ab163a373df5a88d1d 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 18 39 4.2E-18 T 06-07-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 Pfam PF00239 Resolvase, N terminal domain 16 165 7.2E-23 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 SUPERFAMILY SSF53041 15 165 1.83E-22 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 Pfam PF13408 Recombinase zinc beta ribbon domain 329 386 2.7E-7 T 06-07-2017 IPR025827 Recombinase zinc beta ribbon domain CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 SMART SM00857 16 166 2.1E-29 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 Gene3D G3DSA:3.40.50.1390 15 146 2.7E-14 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS17970 bbab5bf4f8cb3e0407204343ae135b7f 690 Pfam PF07508 Recombinase 191 311 1.0E-12 T 06-07-2017 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 CDO28_RS27365 cd4a9cb3c67e101a3ada09a8be8d35ee 427 PIRSF PIRSF006066 1 427 5.0E-146 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS27365 cd4a9cb3c67e101a3ada09a8be8d35ee 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 5.3E-107 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS27365 cd4a9cb3c67e101a3ada09a8be8d35ee 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 3.2E-130 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SUPERFAMILY SSF69705 8 130 2.22E-38 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SUPERFAMILY SSF54814 204 281 1.05E-31 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:3.30.300.20 203 281 4.3E-37 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:3.30.1480.10 8 130 9.3E-48 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:1.10.150.20 435 507 1.6E-14 T 06-07-2017 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SUPERFAMILY SSF47794 357 418 4.87E-16 T 06-07-2017 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SMART SM00316 138 204 3.5E-10 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 9 346 8.2E-141 T 06-07-2017 IPR010213 Transcription termination factor NusA GO:0003723 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Pfam PF00575 S1 RNA binding domain 136 198 1.9E-6 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:2.40.50.140 133 202 5.1E-29 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Pfam PF08529 NusA N-terminal domain 9 129 1.7E-34 T 06-07-2017 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SMART SM00322 234 307 1.1 T 06-07-2017 IPR004087 K Homology domain GO:0003676 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SMART SM00322 308 397 0.3 T 06-07-2017 IPR004087 K Homology domain GO:0003676 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SUPERFAMILY SSF50249 136 203 1.93E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:1.10.150.20 357 422 4.5E-21 T 06-07-2017 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 7 425 31.146 T 06-07-2017 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Gene3D G3DSA:3.30.300.20 283 350 6.7E-33 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 Pfam PF13184 NusA-like KH domain 234 300 1.0E-28 T 06-07-2017 IPR025249 KH domain, NusA-like GO:0003723 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 SUPERFAMILY SSF54814 283 346 7.85E-17 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 CDO28_RS09400 aba46f3358fe57835b56b919845eec5d 542 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 5.1E-20 T 06-07-2017 IPR010214 Transcription termination factor NusA, C-terminal duplication CDO28_RS09955 98572e12731dbd430fbe223e51fa0815 377 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 346 1.5E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 Pfam PF07291 Methylamine utilisation protein MauE 123 253 1.9E-4 T 06-07-2017 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 SUPERFAMILY SSF52833 13 85 1.38E-16 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 Gene3D G3DSA:3.40.30.10 17 85 1.0E-17 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 Pfam PF00462 Glutaredoxin 17 76 2.4E-10 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 PRINTS PR00160 Glutaredoxin signature 18 36 6.4E-6 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 PRINTS PR00160 Glutaredoxin signature 73 86 6.4E-6 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS21510 dea1cc8a90b960f277bf51d546da567d 262 PRINTS PR00160 Glutaredoxin signature 59 72 6.4E-6 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 SUPERFAMILY SSF51556 61 383 1.56E-45 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 Gene3D G3DSA:3.20.20.140 64 392 5.1E-56 T 06-07-2017 CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 Pfam PF01979 Amidohydrolase family 58 431 2.9E-27 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 SUPERFAMILY SSF51338 383 456 5.58E-31 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 SUPERFAMILY SSF51338 4 61 5.58E-31 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 Gene3D G3DSA:2.30.40.10 393 435 3.8E-19 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14220 6bb8ed4f3467bfda49b5b901ca5098bb 491 Gene3D G3DSA:2.30.40.10 5 63 3.8E-19 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS31160 d90b422190cdf1f451222964d016469d 295 SUPERFAMILY SSF103481 46 152 8.24E-12 T 06-07-2017 CDO28_RS31160 d90b422190cdf1f451222964d016469d 295 SUPERFAMILY SSF103481 193 292 1.57E-12 T 06-07-2017 CDO28_RS31160 d90b422190cdf1f451222964d016469d 295 Pfam PF00892 EamA-like transporter family 157 287 2.5E-11 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS31160 d90b422190cdf1f451222964d016469d 295 Pfam PF00892 EamA-like transporter family 12 148 3.1E-11 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS18440 de37dc8536683a5376fc00b58566de9c 334 SUPERFAMILY SSF52540 19 289 7.87E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18440 de37dc8536683a5376fc00b58566de9c 334 Gene3D G3DSA:3.30.450.90 26 118 4.5E-13 T 06-07-2017 CDO28_RS18440 de37dc8536683a5376fc00b58566de9c 334 Pfam PF00437 Type II/IV secretion system protein 27 290 1.7E-82 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CDO28_RS18440 de37dc8536683a5376fc00b58566de9c 334 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 13 315 4.5E-130 T 06-07-2017 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 CDO28_RS18440 de37dc8536683a5376fc00b58566de9c 334 Gene3D G3DSA:3.40.50.300 123 305 1.2E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19485 8be794925c12c61516d6fed085352158 286 Gene3D G3DSA:3.30.390.50 177 279 2.8E-30 T 06-07-2017 CDO28_RS19485 8be794925c12c61516d6fed085352158 286 Gene3D G3DSA:3.30.43.10 2 49 1.6E-13 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS19485 8be794925c12c61516d6fed085352158 286 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 177 278 2.1E-24 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS19485 8be794925c12c61516d6fed085352158 286 SUPERFAMILY SSF56176 2 167 2.34E-45 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS19485 8be794925c12c61516d6fed085352158 286 Gene3D G3DSA:3.30.465.10 55 167 7.6E-29 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS19485 8be794925c12c61516d6fed085352158 286 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 166 2.6E-38 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS19485 8be794925c12c61516d6fed085352158 286 SUPERFAMILY SSF55447 177 282 2.49E-26 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS19485 8be794925c12c61516d6fed085352158 286 SMART SM01092 176 279 6.0E-24 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS34345 b2fde2cda79dd7844e32e3a04071270f 240 SUPERFAMILY SSF51197 8 224 1.01E-20 T 06-07-2017 CDO28_RS34345 b2fde2cda79dd7844e32e3a04071270f 240 Gene3D G3DSA:2.60.120.620 9 223 7.4E-12 T 06-07-2017 CDO28_RS34345 b2fde2cda79dd7844e32e3a04071270f 240 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 125 212 3.3E-4 T 06-07-2017 IPR008775 Phytanoyl-CoA dioxygenase CDO28_RS34660 8cd8d3aabf8b1063bbe0025267a89026 389 Pfam PF13676 TIR domain 136 230 1.5E-17 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS34660 8cd8d3aabf8b1063bbe0025267a89026 389 SUPERFAMILY SSF52200 131 223 7.19E-16 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS34660 8cd8d3aabf8b1063bbe0025267a89026 389 Gene3D G3DSA:3.40.50.10140 135 212 4.7E-11 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Gene3D G3DSA:1.10.10.10 107 186 6.1E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 SUPERFAMILY SSF53850 194 408 5.53E-30 T 06-07-2017 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 108 167 5.2E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.9E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 SUPERFAMILY SSF46785 104 215 2.56E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Pfam PF03466 LysR substrate binding domain 193 403 5.3E-27 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 SUPERFAMILY SSF46785 5 91 9.52E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Gene3D G3DSA:1.10.10.10 4 86 1.6E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 Gene3D G3DSA:3.40.190.10 187 318 3.0E-22 T 06-07-2017 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.3E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.3E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00455 6bd35f2093b558db70c7b17015bfa78d 412 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.3E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 Gene3D G3DSA:3.40.50.1360 81 217 3.5E-10 T 06-07-2017 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 SMART SM01134 77 236 2.2E-49 T 06-07-2017 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.4E-11 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 Pfam PF00455 DeoR C terminal sensor domain 79 235 1.6E-41 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 SMART SM00420 6 58 2.5E-11 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 Gene3D G3DSA:1.10.10.10 1 52 5.0E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 SUPERFAMILY SSF46785 4 61 6.96E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 SUPERFAMILY SSF100950 79 237 1.99E-26 T 06-07-2017 CDO28_RS07505 02a3aa1f63aed9bde6e6df2d3df60e09 270 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS32045 ed90dbc6086f668bc1edc512ab1eead0 119 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 6 44 2.6E-5 T 06-07-2017 IPR018691 Protein of unknown function DUF2188 CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 SUPERFAMILY SSF53955 17 341 6.0E-92 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 Gene3D G3DSA:1.10.101.10 353 411 1.2E-5 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 Gene3D G3DSA:1.10.530.10 100 142 1.9E-50 T 06-07-2017 CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 Gene3D G3DSA:1.10.530.10 223 340 1.9E-50 T 06-07-2017 CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 SUPERFAMILY SSF47090 353 411 3.22E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 Pfam PF13406 Transglycosylase SLT domain 30 335 2.8E-100 T 06-07-2017 IPR031304 Transglycosylase SLT domain 2 CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 Pfam PF01471 Putative peptidoglycan binding domain 357 410 1.2E-4 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS09415 7254f97db78c1ff06b6c54261cb50a19 412 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 30 338 8.8E-109 T 06-07-2017 IPR011970 Lytic murein transglycosylase CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 SMART SM00898 2 137 1.2E-55 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 SUPERFAMILY SSF81624 2 160 1.44E-34 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 301 42.14 T 06-07-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Gene3D G3DSA:3.20.190.10 2 153 2.5E-37 T 06-07-2017 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 SMART SM01232 153 251 1.2E-37 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 SUPERFAMILY SSF57716 247 301 2.85E-15 T 06-07-2017 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 ProSitePatterns PS01242 Zinc finger FPG-type signature. 274 300 - T 06-07-2017 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 136 5.5E-33 T 06-07-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 SUPERFAMILY SSF46946 153 248 5.15E-24 T 06-07-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 300 1.7E-71 T 06-07-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Pfam PF06827 Zinc finger found in FPG and IleRS 271 301 1.4E-8 T 06-07-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 153 248 1.9E-17 T 06-07-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CDO28_RS08725 a6dae77da6bfd30a1a98ab005d5eec52 301 Gene3D G3DSA:1.10.8.50 154 301 2.0E-42 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82714 723 810 1.7E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82866 289 488 6.41E-46 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:3.30.2090.10 182 265 1.4E-11 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:3.30.70.1320 140 178 5.0E-11 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:3.30.70.1320 269 298 5.0E-11 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:3.30.70.1430 40 139 1.7E-22 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82693 40 133 1.88E-21 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82693 267 312 1.74E-14 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82693 138 181 1.74E-14 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:3.30.2090.10 723 814 3.7E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82693 551 618 2.17E-6 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82714 182 265 1.83E-12 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:1.10.3850.10 817 1032 2.6E-51 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Pfam PF00873 AcrB/AcrD/AcrF family 4 1031 7.2E-227 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 Gene3D G3DSA:1.20.1640.10 299 496 3.9E-54 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 SUPERFAMILY SSF82866 809 1032 2.88E-47 T 06-07-2017 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 538 555 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS14895 31ae429a2c121147d0d060f2c5042540 1103 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 4.5E-54 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS26820 f9170a4f65d3b47661e3240192724d4e 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 284 4.8E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26820 f9170a4f65d3b47661e3240192724d4e 294 Gene3D G3DSA:1.10.3720.10 60 287 8.9E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26820 f9170a4f65d3b47661e3240192724d4e 294 SUPERFAMILY SSF161098 54 277 2.35E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Gene3D G3DSA:2.40.30.10 345 430 1.2E-10 T 06-07-2017 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 PRINTS PR00315 GTP-binding elongation factor signature 123 134 8.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 PRINTS PR00315 GTP-binding elongation factor signature 26 39 8.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 PRINTS PR00315 GTP-binding elongation factor signature 107 117 8.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 PRINTS PR00315 GTP-binding elongation factor signature 160 169 8.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 PRINTS PR00315 GTP-binding elongation factor signature 87 95 8.9E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 442 624 2.7E-75 T 06-07-2017 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Pfam PF01583 Adenylylsulphate kinase 460 611 1.2E-74 T 06-07-2017 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 SUPERFAMILY SSF52540 459 628 9.69E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 SUPERFAMILY SSF52540 20 249 1.3E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 SUPERFAMILY SSF50447 237 325 1.99E-19 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Gene3D G3DSA:3.40.50.300 17 232 1.9E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 SUPERFAMILY SSF50465 329 430 8.63E-32 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Gene3D G3DSA:3.40.50.300 438 629 1.8E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Gene3D G3DSA:2.40.30.10 239 344 4.0E-21 T 06-07-2017 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 458 630 39.681 T 06-07-2017 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Pfam PF00009 Elongation factor Tu GTP binding domain 23 210 5.4E-40 T 06-07-2017 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 459 52.65 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS26400 9864d1ecf6d3d2d4b3f1270fff816f66 633 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 430 4.6E-190 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS16985 5deb842464d2c5e8fb9620af974e0fec 408 Gene3D G3DSA:3.40.640.10 48 264 2.9E-43 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS16985 5deb842464d2c5e8fb9620af974e0fec 408 Pfam PF00155 Aminotransferase class I and II 90 396 1.8E-27 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS16985 5deb842464d2c5e8fb9620af974e0fec 408 Gene3D G3DSA:3.90.1150.10 265 401 3.5E-36 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS16985 5deb842464d2c5e8fb9620af974e0fec 408 SUPERFAMILY SSF53383 3 401 2.99E-94 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS09675 5fe6b7e076b5aa37d83a163966c59890 334 Pfam PF01384 Phosphate transporter family 24 166 1.3E-39 T 06-07-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CDO28_RS09675 5fe6b7e076b5aa37d83a163966c59890 334 Pfam PF01384 Phosphate transporter family 171 323 2.8E-54 T 06-07-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CDO28_RS31880 5406aadd3b0de93bdffc2382de5f7c69 345 Gene3D G3DSA:1.10.1530.10 7 72 1.2E-15 T 06-07-2017 CDO28_RS31880 5406aadd3b0de93bdffc2382de5f7c69 345 Pfam PF02615 Malate/L-lactate dehydrogenase 9 333 1.3E-93 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS31880 5406aadd3b0de93bdffc2382de5f7c69 345 SUPERFAMILY SSF89733 5 336 2.22E-96 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS31880 5406aadd3b0de93bdffc2382de5f7c69 345 Gene3D G3DSA:3.30.1370.60 73 278 1.5E-76 T 06-07-2017 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 06-07-2017 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 Gene3D G3DSA:1.10.260.40 10 59 7.6E-21 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 SUPERFAMILY SSF53822 68 315 9.42E-46 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 Pfam PF13377 Periplasmic binding protein-like domain 177 314 5.9E-22 T 06-07-2017 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 SUPERFAMILY SSF47413 10 67 1.25E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 5.4E-16 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 Gene3D G3DSA:3.40.50.2300 181 315 1.4E-32 T 06-07-2017 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 Gene3D G3DSA:3.40.50.2300 60 180 1.7E-29 T 06-07-2017 CDO28_RS29630 1af0a7829f59739a425528ea769c3ec3 334 SMART SM00354 10 80 3.5E-25 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS01750 56f55c4c7367d47fad63996dec425917 79 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 5 39 1.8E-8 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS01750 56f55c4c7367d47fad63996dec425917 79 SMART SM00966 4 50 8.5E-10 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS01750 56f55c4c7367d47fad63996dec425917 79 SUPERFAMILY SSF89447 3 40 1.36E-8 T 06-07-2017 CDO28_RS01750 56f55c4c7367d47fad63996dec425917 79 Gene3D G3DSA:2.10.260.10 5 37 5.7E-7 T 06-07-2017 CDO28_RS01750 56f55c4c7367d47fad63996dec425917 79 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 3 45 1.0E-17 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS34715 b0e70727a873aa88e447eafde02726d9 323 Gene3D G3DSA:3.20.20.70 15 292 6.3E-32 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS34715 b0e70727a873aa88e447eafde02726d9 323 Pfam PF13353 4Fe-4S single cluster domain 23 137 1.1E-5 T 06-07-2017 CDO28_RS34715 b0e70727a873aa88e447eafde02726d9 323 Pfam PF04055 Radical SAM superfamily 21 161 2.2E-10 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS34715 b0e70727a873aa88e447eafde02726d9 323 SUPERFAMILY SSF102114 13 283 6.41E-33 T 06-07-2017 CDO28_RS34520 fbc2603b81ed93f62a05f8724562769d 237 PIRSF PIRSF009320 3 235 1.7E-37 T 06-07-2017 CDO28_RS34520 fbc2603b81ed93f62a05f8724562769d 237 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 136 1.0E-16 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS34520 fbc2603b81ed93f62a05f8724562769d 237 Gene3D G3DSA:3.40.50.300 4 225 3.4E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34520 fbc2603b81ed93f62a05f8724562769d 237 SMART SM00382 2 132 0.0097 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS34520 fbc2603b81ed93f62a05f8724562769d 237 SUPERFAMILY SSF52540 7 226 4.02E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 177 9.2E-38 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 SMART SM00865 210 328 8.4E-57 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 SUPERFAMILY SSF52490 15 211 2.35E-67 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 SMART SM00864 16 208 1.5E-105 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 323 9.4E-119 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 Gene3D G3DSA:3.30.1330.20 218 322 3.8E-49 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 Pfam PF12327 FtsZ family, C-terminal domain 225 320 3.5E-38 T 06-07-2017 IPR024757 Cell division protein FtsZ, C-terminal CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 393 36.708 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 SUPERFAMILY SSF55307 210 322 2.98E-42 T 06-07-2017 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 TIGRFAM TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension 476 589 8.2E-36 T 06-07-2017 IPR017844 Cell division protein FtsZ, C-terminal extension GO:0000910|GO:0005525|GO:0005737 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 Gene3D G3DSA:3.40.50.1440 16 217 4.2E-91 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 PRINTS PR00423 Cell division protein FtsZ signature 192 214 3.5E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 PRINTS PR00423 Cell division protein FtsZ signature 101 121 3.5E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 PRINTS PR00423 Cell division protein FtsZ signature 129 150 3.5E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS16435 6969f01af3b91f170ec9b697ab1d7f7c 590 PRINTS PR00423 Cell division protein FtsZ signature 215 236 3.5E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 Gene3D G3DSA:3.30.43.10 3 90 6.4E-20 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 Gene3D G3DSA:1.10.45.10 413 452 6.4E-19 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 Pfam PF02913 FAD linked oxidases, C-terminal domain 213 452 1.1E-48 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 SUPERFAMILY SSF56176 2 213 7.48E-69 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 SUPERFAMILY SSF55103 186 452 5.4E-48 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 Pfam PF01565 FAD binding domain 37 173 2.7E-34 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS26295 0fccf30272546ed15956b8de7e1ac133 456 Gene3D G3DSA:3.30.465.10 93 213 1.5E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 114 3.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 262 276 3.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 PRINTS PR00111 Alpha/beta hydrolase fold signature 146 159 3.1E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 Gene3D G3DSA:3.40.50.1820 53 317 7.1E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 SUPERFAMILY SSF53474 51 317 9.4E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19380 67d89120690b744453e17052a0b50fdc 322 Pfam PF00561 alpha/beta hydrolase fold 75 305 2.2E-24 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS23990 cf05675073ca48054891f67bbecab9c8 281 SUPERFAMILY SSF46785 1 81 3.49E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23990 cf05675073ca48054891f67bbecab9c8 281 SUPERFAMILY SSF53850 109 266 2.35E-9 T 06-07-2017 CDO28_RS23990 cf05675073ca48054891f67bbecab9c8 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 54 5.1E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23990 cf05675073ca48054891f67bbecab9c8 281 Gene3D G3DSA:1.10.10.10 1 73 2.9E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 Gene3D G3DSA:3.90.76.10 45 193 9.8E-34 T 06-07-2017 CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 Gene3D G3DSA:3.10.105.10 309 499 7.6E-41 T 06-07-2017 CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 430 1.5E-74 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 Gene3D G3DSA:3.40.190.10 194 308 8.2E-34 T 06-07-2017 CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 SUPERFAMILY SSF53850 29 522 6.33E-117 T 06-07-2017 CDO28_RS33945 dc23ea6605379610a5bdb8c95dd60dc7 531 PIRSF PIRSF002741 20 526 1.6E-82 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.2E-68 T 06-07-2017 IPR023798 Ribosomal protein S7 domain CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 PIRSF PIRSF002122 2 156 7.9E-63 T 06-07-2017 IPR000235 Ribosomal protein S5/S7 GO:0006412 CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 Gene3D G3DSA:1.10.455.10 7 156 1.0E-67 T 06-07-2017 IPR023798 Ribosomal protein S7 domain CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 SUPERFAMILY SSF47973 3 149 7.85E-64 T 06-07-2017 IPR023798 Ribosomal protein S7 domain CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 06-07-2017 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.061 T 06-07-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS03650 769e7c4266bfff636f2d2c48e10b55af 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 6.3E-69 T 06-07-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS28975 d79e26296c240496cbc94841d832e942 258 Pfam PF04989 Cephalosporin hydroxylase 39 257 2.9E-94 T 06-07-2017 IPR007072 Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase GO:0008168|GO:0008610 CDO28_RS28975 d79e26296c240496cbc94841d832e942 258 SUPERFAMILY SSF53335 22 257 3.58E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28975 d79e26296c240496cbc94841d832e942 258 Gene3D G3DSA:3.40.50.150 45 236 3.3E-8 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Gene3D G3DSA:3.30.1490.100 281 382 3.0E-32 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Gene3D G3DSA:3.30.70.270 105 203 4.2E-27 T 06-07-2017 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Pfam PF11799 impB/mucB/samB family C-terminal domain 279 382 3.5E-19 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Gene3D G3DSA:1.10.150.20 207 277 4.2E-20 T 06-07-2017 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Pfam PF00817 impB/mucB/samB family 48 194 8.2E-47 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 Hamap MF_01113 DNA polymerase IV [dinB]. 42 386 34.769 T 06-07-2017 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 SUPERFAMILY SSF100879 279 378 4.12E-28 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS03995 d0ce63848587c9fa6dd04cec5ac7b6ed 430 SUPERFAMILY SSF56672 42 274 1.51E-79 T 06-07-2017 CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 Gene3D G3DSA:3.40.50.620 1 223 6.5E-66 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 1 215 48.298 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 202 6.9E-53 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 PIRSF PIRSF006293 1 221 2.0E-76 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 SUPERFAMILY SSF52402 1 223 5.29E-60 T 06-07-2017 CDO28_RS28065 1379baded4874cb276b751fe88331bb7 236 Pfam PF06508 Queuosine biosynthesis protein QueC 2 208 4.8E-55 T 06-07-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 Pfam PF00072 Response regulator receiver domain 5 117 8.8E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 Gene3D G3DSA:1.10.10.10 130 226 5.4E-35 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 225 5.2E-103 T 06-07-2017 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 SMART SM00862 150 225 4.9E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 SUPERFAMILY SSF52172 3 125 1.71E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 SUPERFAMILY SSF46894 129 226 5.57E-32 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 SMART SM00448 3 116 1.7E-42 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 3.8E-27 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS08005 dd83d53e6c48720ed865bb8534af16cf 227 Gene3D G3DSA:3.40.50.2300 3 124 5.4E-39 T 06-07-2017 CDO28_RS06030 737b50b1585d464f3829d7cdcf9ebb95 198 SUPERFAMILY SSF110111 57 183 2.48E-52 T 06-07-2017 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06030 737b50b1585d464f3829d7cdcf9ebb95 198 PIRSF PIRSF005413 3 197 1.7E-76 T 06-07-2017 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 CDO28_RS06030 737b50b1585d464f3829d7cdcf9ebb95 198 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 186 45.071 T 06-07-2017 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 CDO28_RS06030 737b50b1585d464f3829d7cdcf9ebb95 198 Gene3D G3DSA:2.60.370.10 58 195 1.5E-54 T 06-07-2017 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06030 737b50b1585d464f3829d7cdcf9ebb95 198 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 35 179 1.2E-56 T 06-07-2017 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Gene3D G3DSA:3.40.50.300 3 234 1.2E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Gene3D G3DSA:2.40.50.100 239 278 2.1E-4 T 06-07-2017 CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Gene3D G3DSA:2.40.50.100 333 347 2.1E-4 T 06-07-2017 CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Gene3D G3DSA:2.40.50.140 288 331 4.6E-8 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 SUPERFAMILY SSF50331 236 347 5.83E-24 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 SMART SM00382 28 211 1.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Pfam PF08402 TOBE domain 273 339 2.5E-9 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 Pfam PF00005 ABC transporter 20 161 4.0E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 SUPERFAMILY SSF52540 4 242 1.68E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31750 895f2a86bc19f4da4195fe75fb52e5fe 363 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 Gene3D G3DSA:3.40.50.620 241 250 1.3E-61 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 Gene3D G3DSA:3.40.50.620 4 207 1.3E-61 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 26 254 2.2E-66 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 1 299 58.878 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 PIRSF PIRSF002936 1 299 2.6E-151 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 6 299 4.1E-158 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS23120 8247234252e4f543125106e77e3ff7a5 299 SUPERFAMILY SSF52402 2 207 1.21E-72 T 06-07-2017 CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 SUPERFAMILY SSF53850 29 522 9.15E-116 T 06-07-2017 CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 430 2.9E-74 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 Gene3D G3DSA:3.40.190.10 194 308 7.4E-34 T 06-07-2017 CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 Gene3D G3DSA:3.90.76.10 45 193 7.6E-33 T 06-07-2017 CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 PIRSF PIRSF002741 21 525 6.1E-82 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS23425 6c786106f2e075ac5dad9258e8a3689c 531 Gene3D G3DSA:3.10.105.10 309 499 4.9E-41 T 06-07-2017 CDO28_RS32100 b498f11bd0af74e6df8701b98b22d850 215 SMART SM01120 34 210 1.1E-57 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32100 b498f11bd0af74e6df8701b98b22d850 215 Pfam PF02734 DAK2 domain 34 209 1.9E-45 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32100 b498f11bd0af74e6df8701b98b22d850 215 SUPERFAMILY SSF101473 8 211 1.23E-47 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32100 b498f11bd0af74e6df8701b98b22d850 215 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 12 209 5.2E-54 T 06-07-2017 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 SUPERFAMILY SSF52540 3 167 6.54E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 382 462 5.0E-31 T 06-07-2017 IPR032859 GTPase Der, C-terminal KH-domain-like CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 462 1.3E-164 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 159 6.0E-25 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 203 371 3.0E-26 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 PIRSF PIRSF006485 1 470 5.8E-158 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 SUPERFAMILY SSF52540 138 167 3.93E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 SUPERFAMILY SSF52540 202 468 3.93E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Hamap MF_00195 GTPase Der [der]. 2 465 36.318 T 06-07-2017 IPR016484 GTP-binding protein EngA GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Gene3D G3DSA:3.40.50.300 202 388 9.7E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Gene3D G3DSA:3.40.50.300 2 172 7.8E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Gene3D G3DSA:3.30.300.20 389 464 8.1E-31 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Pfam PF01926 50S ribosome-binding GTPase 206 324 3.3E-20 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 Pfam PF01926 50S ribosome-binding GTPase 5 120 8.1E-28 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 54 69 5.0E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS28360 bbade0e492d95ad1642aa0abef43108b 476 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.0E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 Pfam PF00664 ABC transporter transmembrane region 23 288 1.1E-43 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 Pfam PF00005 ABC transporter 352 500 3.9E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 Gene3D G3DSA:3.40.50.300 335 563 4.8E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 SUPERFAMILY SSF52540 330 568 4.88E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 SUPERFAMILY SSF90123 11 299 5.89E-46 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 TIGRFAM TIGR01192 chvA: glucan exporter ATP-binding protein 1 585 0.0 T 06-07-2017 IPR005896 Glucan exporter ATP-binding protein, NdvA GO:0005886|GO:0015441|GO:0015775 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 Gene3D G3DSA:1.20.1560.10 10 314 9.0E-42 T 06-07-2017 CDO28_RS10945 9fc582cb206ff4d1aa612f9f0d79ae69 585 SMART SM00382 360 546 7.3E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 SMART SM00347 27 127 2.2E-22 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 SUPERFAMILY SSF46785 8 143 8.02E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.5E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 1.5E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.5E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.5E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 Gene3D G3DSA:1.10.10.10 3 142 1.0E-36 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04845 7c5deccda4e1b452e335f7aa42d28aee 150 Pfam PF12802 MarR family 33 91 1.4E-14 T 06-07-2017 CDO28_RS24585 b71ae96e4fdb81bb0aef4a4277b41095 251 Gene3D G3DSA:1.10.3720.10 41 234 2.4E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24585 b71ae96e4fdb81bb0aef4a4277b41095 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 245 2.0E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24585 b71ae96e4fdb81bb0aef4a4277b41095 251 SUPERFAMILY SSF161098 49 234 1.83E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16545 fabcff59db094a75cf7394b3f29fd533 165 Pfam PF05981 CreA protein 28 154 1.8E-46 T 06-07-2017 IPR010292 Uncharacterised protein family CreA CDO28_RS16545 fabcff59db094a75cf7394b3f29fd533 165 PIRSF PIRSF003174 2 165 9.2E-48 T 06-07-2017 IPR010292 Uncharacterised protein family CreA CDO28_RS22490 6e97f3e07fa4ff011567a889d175c18c 399 Gene3D G3DSA:3.40.50.20 8 104 4.4E-6 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS22490 6e97f3e07fa4ff011567a889d175c18c 399 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 101 301 2.5E-17 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22490 6e97f3e07fa4ff011567a889d175c18c 399 Gene3D G3DSA:3.30.470.20 105 381 1.4E-36 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS22490 6e97f3e07fa4ff011567a889d175c18c 399 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 265 272 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22490 6e97f3e07fa4ff011567a889d175c18c 399 SUPERFAMILY SSF56059 92 303 2.86E-42 T 06-07-2017 CDO28_RS22510 6e97f3e07fa4ff011567a889d175c18c 399 Gene3D G3DSA:3.40.50.20 8 104 4.4E-6 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS22510 6e97f3e07fa4ff011567a889d175c18c 399 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 101 301 2.5E-17 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22510 6e97f3e07fa4ff011567a889d175c18c 399 Gene3D G3DSA:3.30.470.20 105 381 1.4E-36 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS22510 6e97f3e07fa4ff011567a889d175c18c 399 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 265 272 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22510 6e97f3e07fa4ff011567a889d175c18c 399 SUPERFAMILY SSF56059 92 303 2.86E-42 T 06-07-2017 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 152 1.1E-46 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 31 152 3.7E-49 T 06-07-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 06-07-2017 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 84 139 5.0E-27 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 SUPERFAMILY SSF143243 7 185 4.71E-65 T 06-07-2017 CDO28_RS04125 85408eda989d096bcc15233307f49058 201 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 160 33.134 T 06-07-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 Gene3D G3DSA:3.40.190.10 87 163 4.4E-6 T 06-07-2017 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 Pfam PF03466 LysR substrate binding domain 90 296 2.4E-33 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 SUPERFAMILY SSF46785 5 114 1.28E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 Gene3D G3DSA:3.40.190.10 164 266 2.3E-18 T 06-07-2017 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 SUPERFAMILY SSF53850 92 297 7.42E-39 T 06-07-2017 CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 Gene3D G3DSA:1.10.10.10 5 86 2.7E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23725 67b5fa910f3c18d9907d3d1c76581936 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.3E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 Gene3D G3DSA:3.40.190.10 113 210 2.1E-27 T 06-07-2017 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 Gene3D G3DSA:3.40.190.10 32 112 1.4E-47 T 06-07-2017 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 Gene3D G3DSA:3.40.190.10 213 255 1.4E-47 T 06-07-2017 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 SMART SM00062 35 254 5.6E-74 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 SUPERFAMILY SSF53850 2 254 1.94E-71 T 06-07-2017 CDO28_RS10970 4bc3c4ec2d29b9cfcafb9b0996279ba7 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 252 2.4E-67 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 Gene3D G3DSA:3.40.50.720 426 692 8.0E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 SUPERFAMILY SSF51735 426 695 1.98E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 589 608 3.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 515 526 3.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 569 577 3.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 27 224 4.5E-22 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 657 677 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 439 456 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 589 608 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 515 526 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 563 579 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 610 627 6.6E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 26 699 0.0 T 06-07-2017 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 SUPERFAMILY SSF53639 26 255 4.12E-37 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 Gene3D G3DSA:3.40.225.10 24 236 2.8E-36 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 445 692 1.6E-46 T 06-07-2017 CDO28_RS07510 01073918332c893ad0cc03c7cf3f8550 699 SMART SM01007 27 229 1.2E-39 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 ProSitePatterns PS00455 Putative AMP-binding domain signature. 153 164 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Gene3D G3DSA:3.40.50.980 162 313 1.1E-21 T 06-07-2017 CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Gene3D G3DSA:2.30.38.10 315 389 3.6E-11 T 06-07-2017 CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Gene3D G3DSA:3.40.50.980 5 161 6.4E-14 T 06-07-2017 CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Pfam PF13193 AMP-binding enzyme C-terminal domain 404 477 4.6E-11 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 SUPERFAMILY SSF56801 3 490 1.44E-87 T 06-07-2017 CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Pfam PF00501 AMP-binding enzyme 11 395 2.1E-41 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS06140 e380e4bca4023fe5cd2fef8b237b6478 498 Gene3D G3DSA:3.30.300.30 392 486 7.5E-21 T 06-07-2017 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 SUPERFAMILY SSF54849 138 203 1.42E-22 T 06-07-2017 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 SUPERFAMILY SSF48592 406 521 1.37E-75 T 06-07-2017 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 SUPERFAMILY SSF48592 7 134 1.37E-75 T 06-07-2017 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 42.471 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 2.9E-97 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 Gene3D G3DSA:1.10.560.10 3 188 2.6E-46 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 SUPERFAMILY SSF52029 184 376 6.43E-87 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 7.1E-257 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 Gene3D G3DSA:3.50.7.10 189 366 1.9E-103 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS06630 709c634df2db823c27b2962ace5e0812 545 Gene3D G3DSA:1.10.560.10 367 518 1.2E-43 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 Pfam PF00266 Aminotransferase class-V 72 316 2.8E-15 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 20 373 1.0E-143 T 06-07-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 PIRSF PIRSF000524 15 398 1.2E-50 T 06-07-2017 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 SUPERFAMILY SSF53383 18 379 8.97E-79 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 Gene3D G3DSA:3.90.1150.10 267 372 4.5E-40 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 383 183.603 T 06-07-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 19 375 1.9E-145 T 06-07-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CDO28_RS27615 d259a0a0b1a2b27b7bd84dec666e5652 398 Gene3D G3DSA:3.40.640.10 33 266 1.2E-41 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS01725 b464e7e8bed840de6513bc3d29e5204d 187 Pfam PF00583 Acetyltransferase (GNAT) family 86 162 4.8E-5 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS01725 b464e7e8bed840de6513bc3d29e5204d 187 SUPERFAMILY SSF55729 51 172 1.15E-16 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS01725 b464e7e8bed840de6513bc3d29e5204d 187 Gene3D G3DSA:3.40.630.30 21 170 1.9E-12 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 Pfam PF04055 Radical SAM superfamily 102 250 7.5E-9 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 PIRSF PIRSF004911 1 348 2.8E-121 T 06-07-2017 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 TIGRFAM TIGR00238 TIGR00238: KamA family protein 7 314 1.2E-76 T 06-07-2017 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 TIGRFAM TIGR03822 AblA_like_2: lysine-2,3-aminomutase-related protein 7 327 1.6E-179 T 06-07-2017 IPR022447 Lysine-2,3-aminomutase-related CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 SUPERFAMILY SSF102114 85 326 9.68E-31 T 06-07-2017 CDO28_RS09180 669c313ca45a5e3a92a04e9ed3997afe 350 Gene3D G3DSA:3.20.20.70 87 300 3.4E-18 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 Gene3D G3DSA:1.10.10.10 24 84 3.8E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 SUPERFAMILY SSF53067 90 390 4.16E-41 T 06-07-2017 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 Gene3D G3DSA:3.30.420.40 86 231 5.3E-34 T 06-07-2017 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 Pfam PF00480 ROK family 92 367 4.7E-30 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 Gene3D G3DSA:3.30.420.40 232 370 1.9E-22 T 06-07-2017 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 Pfam PF13412 Winged helix-turn-helix DNA-binding 27 65 6.5E-7 T 06-07-2017 CDO28_RS26390 8622cc01ec330d4b81b85c98d019f9f1 409 SUPERFAMILY SSF46785 20 79 1.93E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 Pfam PF01386 Ribosomal L25p family 7 94 8.5E-24 T 06-07-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 186 29.724 T 06-07-2017 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 184 8.0E-44 T 06-07-2017 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 SUPERFAMILY SSF50715 4 193 1.19E-58 T 06-07-2017 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 Gene3D G3DSA:2.170.120.20 100 193 2.9E-29 T 06-07-2017 IPR020057 Ribosomal protein L25, beta domain CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 97 3.0E-48 T 06-07-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 Gene3D G3DSA:2.40.240.10 5 97 2.0E-32 T 06-07-2017 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDO28_RS15450 7f7a7caf16c590e39c5730ad9e739c20 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 185 3.6E-28 T 06-07-2017 IPR020057 Ribosomal protein L25, beta domain CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 Pfam PF01266 FAD dependent oxidoreductase 27 382 4.2E-60 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 Gene3D G3DSA:3.50.50.60 347 397 4.0E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 Gene3D G3DSA:3.50.50.60 19 116 4.0E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 Gene3D G3DSA:3.50.50.60 169 250 4.0E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 SUPERFAMILY SSF51905 25 251 1.42E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25655 8ce8926cbfb21a5df0f438ea9d9dced0 425 SUPERFAMILY SSF51905 347 413 1.42E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 Gene3D G3DSA:3.10.50.40 491 595 3.3E-4 T 06-07-2017 CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 Gene3D G3DSA:3.10.50.40 260 374 2.2E-13 T 06-07-2017 CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 SUPERFAMILY SSF109998 241 296 7.06E-20 T 06-07-2017 IPR027304 Trigger factor/SurA domain CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 SUPERFAMILY SSF109998 40 167 7.06E-20 T 06-07-2017 IPR027304 Trigger factor/SurA domain CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 Pfam PF13624 SurA N-terminal domain 1 163 1.1E-35 T 06-07-2017 CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 SUPERFAMILY SSF54534 220 353 3.38E-7 T 06-07-2017 CDO28_RS01060 4a2b63b6a9094e68a8475453300d8b6a 630 Pfam PF13145 PPIC-type PPIASE domain 247 368 2.1E-25 T 06-07-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 CDO28_RS29735 6d76887d477d3907c92a2a73c485da82 213 Gene3D G3DSA:3.40.50.1820 13 210 4.9E-34 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS29735 6d76887d477d3907c92a2a73c485da82 213 SUPERFAMILY SSF53474 8 155 8.39E-24 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04045 1737e847a35dc965a87f8d75e3d864db 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 1.7E-21 T 06-07-2017 CDO28_RS04045 1737e847a35dc965a87f8d75e3d864db 134 SUPERFAMILY SSF54593 1 133 1.61E-34 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS04045 1737e847a35dc965a87f8d75e3d864db 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 4 133 2.8E-51 T 06-07-2017 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|Reactome: R-HSA-71032 CDO28_RS04045 1737e847a35dc965a87f8d75e3d864db 134 Gene3D G3DSA:3.10.180.10 1 133 3.0E-46 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 Gene3D G3DSA:3.40.50.300 4 194 4.2E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 Gene3D G3DSA:3.40.50.300 281 508 2.6E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 Pfam PF00005 ABC transporter 25 148 1.5E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 Pfam PF00005 ABC transporter 301 433 6.1E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 SUPERFAMILY SSF52540 3 195 6.16E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 SUPERFAMILY SSF52540 272 469 9.01E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 Pfam PF16326 ABC transporter C-terminal domain 532 600 7.2E-19 T 06-07-2017 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 SMART SM00382 30 193 8.3E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11090 2d80373a6f722ea5ca13a3c0163daa87 613 SMART SM00382 307 478 1.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 106 7.4E-15 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 SMART SM00862 31 106 9.8E-15 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 SMART SM00382 166 294 0.0022 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 SUPERFAMILY SSF48452 595 778 2.28E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 Gene3D G3DSA:1.10.10.10 11 109 7.9E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 SUPERFAMILY SSF52540 141 343 1.35E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 SUPERFAMILY SSF46894 11 108 1.98E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS19625 13f0944022401e081b877c80c756c28a 926 Gene3D G3DSA:3.40.50.300 145 292 1.2E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 Pfam PF00005 ABC transporter 21 179 2.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 SMART SM00382 30 228 9.5E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 TIGRFAM TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA 6 256 2.5E-149 T 06-07-2017 IPR014343 Ectoine/hydroxyectoine ABC transporter, ATP-binding protein CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 Gene3D G3DSA:3.40.50.300 4 251 9.8E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 SUPERFAMILY SSF52540 5 250 1.77E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 PIRSF PIRSF039085 2 256 1.4E-105 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS32685 de7fb01308d36571c454dc1117169d22 261 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 Pfam PF00005 ABC transporter 39 192 9.0E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 SUPERFAMILY SSF52540 24 263 1.65E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 242 330 5.3E-25 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 Gene3D G3DSA:3.40.50.300 7 265 9.2E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 310 8.0E-18 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS22675 d02ab9c30f5557fe6abbd29f89f8e27b 337 SMART SM00382 47 250 5.8E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS18760 6ea1fdfb9ac956441b660f045295f0a8 672 Gene3D G3DSA:3.30.1330.60 548 660 3.1E-25 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS18760 6ea1fdfb9ac956441b660f045295f0a8 672 SUPERFAMILY SSF103088 547 660 8.24E-23 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS18760 6ea1fdfb9ac956441b660f045295f0a8 672 Pfam PF00691 OmpA family 557 652 8.7E-16 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 290 6.9E-126 T 06-07-2017 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 SUPERFAMILY SSF48179 160 291 1.36E-42 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 Gene3D G3DSA:1.10.1040.10 162 291 1.0E-46 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 SUPERFAMILY SSF51735 2 160 2.36E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 Gene3D G3DSA:3.40.50.720 1 161 1.9E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 289 3.7E-40 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 3.5E-50 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS29980 5fadfc1f3721db28cc566fd5c8d86928 298 PIRSF PIRSF000103 1 298 4.7E-78 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS20620 7c4e6a77e0c2b7fd59bcc397962d2674 389 SUPERFAMILY SSF103473 9 384 3.27E-39 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS20620 7c4e6a77e0c2b7fd59bcc397962d2674 389 Pfam PF07690 Major Facilitator Superfamily 15 344 5.1E-26 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS20620 7c4e6a77e0c2b7fd59bcc397962d2674 389 Gene3D G3DSA:1.20.1250.20 10 191 2.4E-22 T 06-07-2017 CDO28_RS25060 229ce8e06af887173236d714699870aa 388 Gene3D G3DSA:2.40.50.100 59 92 2.2E-18 T 06-07-2017 CDO28_RS25060 229ce8e06af887173236d714699870aa 388 Gene3D G3DSA:2.40.50.100 166 197 2.2E-18 T 06-07-2017 CDO28_RS25060 229ce8e06af887173236d714699870aa 388 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 285 4.8E-14 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS25060 229ce8e06af887173236d714699870aa 388 SUPERFAMILY SSF111369 48 290 4.18E-63 T 06-07-2017 CDO28_RS25060 229ce8e06af887173236d714699870aa 388 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 366 3.6E-80 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 SUPERFAMILY SSF53850 54 525 1.48E-109 T 06-07-2017 CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 PIRSF PIRSF002741 21 535 1.6E-69 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 Gene3D G3DSA:3.40.190.10 214 314 9.0E-19 T 06-07-2017 CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 Gene3D G3DSA:3.90.76.10 75 213 4.9E-35 T 06-07-2017 CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 107 449 1.4E-66 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS25680 3d6e7f81cb6a94ab9248072479573f30 536 Gene3D G3DSA:3.10.105.10 315 498 4.0E-30 T 06-07-2017 CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 SMART SM00028 13 46 0.0061 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 SUPERFAMILY SSF48452 9 47 8.99E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 Gene3D G3DSA:3.40.50.150 68 253 5.3E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 Gene3D G3DSA:1.25.40.10 16 47 3.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 Pfam PF13489 Methyltransferase domain 99 249 1.1E-12 T 06-07-2017 CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 SUPERFAMILY SSF53335 65 260 2.26E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS18720 530ae26ed4ea5da2b9347b7ced9a257c 275 Pfam PF07719 Tetratricopeptide repeat 17 46 3.1E-6 T 06-07-2017 IPR013105 Tetratricopeptide repeat 2 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Gene3D G3DSA:3.40.47.10 12 128 3.2E-56 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Gene3D G3DSA:3.40.47.10 195 267 3.2E-56 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 13 387 7.1E-113 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Pfam PF00108 Thiolase, N-terminal domain 12 256 7.0E-69 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Gene3D G3DSA:3.40.47.10 273 389 1.4E-46 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Gene3D G3DSA:3.40.47.10 150 194 1.4E-46 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 06-07-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 Pfam PF02803 Thiolase, C-terminal domain 273 387 4.2E-29 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 SUPERFAMILY SSF53901 272 388 1.1E-25 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 SUPERFAMILY SSF53901 12 265 3.51E-64 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06145 267d4dd5308135cf0e75cf674a7ddf73 397 PIRSF PIRSF000429 6 392 8.1E-125 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS11575 3b4686bb0e52fa19a2cc2a5255d4f3e5 123 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.1E-37 T 06-07-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11575 3b4686bb0e52fa19a2cc2a5255d4f3e5 123 SUPERFAMILY SSF141091 1 101 7.06E-35 T 06-07-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11575 3b4686bb0e52fa19a2cc2a5255d4f3e5 123 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 25.753 T 06-07-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11575 3b4686bb0e52fa19a2cc2a5255d4f3e5 123 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 6.1E-34 T 06-07-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS05880 57f5caaa7042a5b3cc6460e5ff40e82d 302 SUPERFAMILY SSF56281 17 288 5.55E-53 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS05880 57f5caaa7042a5b3cc6460e5ff40e82d 302 SMART SM00849 39 215 2.1E-22 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS05880 57f5caaa7042a5b3cc6460e5ff40e82d 302 Pfam PF00753 Metallo-beta-lactamase superfamily 37 215 1.6E-16 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS05880 57f5caaa7042a5b3cc6460e5ff40e82d 302 Gene3D G3DSA:3.60.15.10 11 241 5.0E-44 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS22145 e848d4ea2749fe4e4f46c2b5944e5630 252 SUPERFAMILY SSF53448 4 243 1.44E-29 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS22145 e848d4ea2749fe4e4f46c2b5944e5630 252 Pfam PF12804 MobA-like NTP transferase domain 4 131 7.6E-15 T 06-07-2017 IPR025877 MobA-like NTP transferase CDO28_RS22145 e848d4ea2749fe4e4f46c2b5944e5630 252 Gene3D G3DSA:3.90.550.10 3 241 8.3E-27 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS06740 7e332a7084a9638993f513a63e01f467 457 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 51 361 6.8E-84 T 06-07-2017 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CDO28_RS06740 7e332a7084a9638993f513a63e01f467 457 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 10 457 2.2E-186 T 06-07-2017 IPR011556 Glutamate--cysteine ligase, plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CDO28_RS06740 7e332a7084a9638993f513a63e01f467 457 PIRSF PIRSF017901 1 457 1.2E-176 T 06-07-2017 CDO28_RS06740 7e332a7084a9638993f513a63e01f467 457 SUPERFAMILY SSF55931 24 267 1.37E-63 T 06-07-2017 CDO28_RS06740 7e332a7084a9638993f513a63e01f467 457 SUPERFAMILY SSF55931 307 453 1.37E-63 T 06-07-2017 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 SUPERFAMILY SSF52402 31 219 3.28E-47 T 06-07-2017 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 SMART SM00893 32 224 5.7E-44 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 PIRSF PIRSF000089 28 361 9.0E-101 T 06-07-2017 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 SUPERFAMILY SSF52467 237 355 5.14E-43 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 300 326 - T 06-07-2017 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 Gene3D G3DSA:3.40.50.620 31 226 6.0E-68 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 237 319 5.4E-33 T 06-07-2017 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 Gene3D G3DSA:3.40.50.1220 234 356 2.4E-48 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS22970 7f67d75a38abe89ed14e43b46b178d72 370 Pfam PF01012 Electron transfer flavoprotein domain 32 202 1.6E-40 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS00265 4eab4b02fce2acbb8e82156b1716983a 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 253 266 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS00265 4eab4b02fce2acbb8e82156b1716983a 319 SUPERFAMILY SSF53613 8 290 6.24E-47 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS00265 4eab4b02fce2acbb8e82156b1716983a 319 Pfam PF00294 pfkB family carbohydrate kinase 8 294 1.6E-38 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS00265 4eab4b02fce2acbb8e82156b1716983a 319 Gene3D G3DSA:3.40.1190.20 7 311 2.0E-59 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 50 74 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 18 342 1.4E-122 T 06-07-2017 IPR030830 5-dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 SUPERFAMILY SSF53613 17 342 1.71E-67 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 286 299 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 337 643 7.8E-127 T 06-07-2017 IPR018659 Protein of unknown function DUF2090 CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 Gene3D G3DSA:3.40.1190.20 16 347 6.6E-83 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS08790 cf74ca8f8af2cfeaf0869a1226a3a966 650 Pfam PF00294 pfkB family carbohydrate kinase 20 334 1.1E-43 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS03250 33e24c50280e47b8ef0d41790b22200f 194 SUPERFAMILY SSF55469 6 191 2.49E-36 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS03250 33e24c50280e47b8ef0d41790b22200f 194 PIRSF PIRSF000232 3 193 4.0E-58 T 06-07-2017 IPR026021 Putative NAD(P)H nitroreductase YdjA-like CDO28_RS03250 33e24c50280e47b8ef0d41790b22200f 194 Gene3D G3DSA:3.40.109.10 7 190 5.4E-41 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS03250 33e24c50280e47b8ef0d41790b22200f 194 Pfam PF00881 Nitroreductase family 12 169 5.1E-24 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDO28_RS14245 ce48954870d0237951db32fe9e69aa4d 235 SMART SM00382 26 212 1.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14245 ce48954870d0237951db32fe9e69aa4d 235 SUPERFAMILY SSF52540 2 228 5.53E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14245 ce48954870d0237951db32fe9e69aa4d 235 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14245 ce48954870d0237951db32fe9e69aa4d 235 Gene3D G3DSA:3.40.50.300 1 225 1.3E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14245 ce48954870d0237951db32fe9e69aa4d 235 Pfam PF00005 ABC transporter 18 163 1.8E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 SUPERFAMILY SSF53822 57 329 4.52E-83 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 SMART SM00354 1 68 1.2E-19 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 Gene3D G3DSA:3.40.50.2300 55 162 1.9E-33 T 06-07-2017 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 Gene3D G3DSA:3.40.50.2300 163 329 2.6E-63 T 06-07-2017 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 SUPERFAMILY SSF47413 2 56 1.41E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 Gene3D G3DSA:1.10.260.40 2 54 9.3E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 Pfam PF13377 Periplasmic binding protein-like domain 167 327 5.4E-39 T 06-07-2017 CDO28_RS29665 2dd6c6163c67cccba4d26ac91cc3e6a0 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 6.1E-14 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS29810 6808f270325bb17769503f8524eb21f0 153 Gene3D G3DSA:3.90.280.10 2 152 6.2E-46 T 06-07-2017 IPR008914 Phosphatidylethanolamine-binding protein CDO28_RS29810 6808f270325bb17769503f8524eb21f0 153 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 151 5.3E-28 T 06-07-2017 IPR008914 Phosphatidylethanolamine-binding protein CDO28_RS29810 6808f270325bb17769503f8524eb21f0 153 SUPERFAMILY SSF49777 3 152 1.7E-41 T 06-07-2017 IPR008914 Phosphatidylethanolamine-binding protein CDO28_RS29810 6808f270325bb17769503f8524eb21f0 153 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 22 151 2.8E-25 T 06-07-2017 IPR005247 YbhB/YbcL CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SUPERFAMILY SSF47644 666 753 2.48E-28 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Pfam PF02607 B12 binding domain 673 746 1.9E-24 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Gene3D G3DSA:3.20.20.330 21 378 5.4E-124 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Gene3D G3DSA:3.20.20.20 379 651 1.3E-114 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Pfam PF02310 B12 binding domain 768 857 1.3E-17 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Gene3D G3DSA:3.40.50.280 764 915 1.2E-60 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Pfam PF00809 Pterin binding enzyme 375 613 3.0E-60 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SUPERFAMILY SSF51717 371 645 6.41E-89 T 06-07-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 PIRSF PIRSF000381 18 1218 0.0 T 06-07-2017 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 TIGRFAM TIGR02082 metH: methionine synthase 29 1215 0.0 T 06-07-2017 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SUPERFAMILY SSF56507 923 1249 3.66E-132 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SUPERFAMILY SSF82282 24 414 5.23E-115 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 959 1230 3.2E-118 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Gene3D G3DSA:1.10.1240.10 664 751 1.4E-38 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Gene3D G3DSA:3.10.196.10 979 1250 6.6E-108 T 06-07-2017 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 Pfam PF02574 Homocysteine S-methyltransferase 33 340 3.2E-89 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SUPERFAMILY SSF52242 763 912 1.31E-42 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS12165 dd9ffebbcb6f6a63671c7040b99a0e78 1257 SMART SM01018 671 754 4.6E-46 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 SUPERFAMILY SSF55261 295 425 9.97E-33 T 06-07-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 SUPERFAMILY SSF55681 115 298 6.57E-95 T 06-07-2017 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 SUPERFAMILY SSF55681 430 590 6.57E-95 T 06-07-2017 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Pfam PF02938 GAD domain 314 407 3.6E-9 T 06-07-2017 IPR029351 GAD domain Reactome: R-HSA-379726 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 SUPERFAMILY SSF50249 4 107 2.29E-31 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Gene3D G3DSA:2.40.50.140 4 109 9.2E-38 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 563 3.1E-92 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Gene3D G3DSA:3.30.930.10 420 588 6.9E-97 T 06-07-2017 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Gene3D G3DSA:3.30.930.10 136 282 6.9E-97 T 06-07-2017 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Gene3D G3DSA:3.30.1360.30 283 419 1.1E-47 T 06-07-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 588 7.6E-185 T 06-07-2017 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 Reactome: R-HSA-379726 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 2.9E-22 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 2.9E-22 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 2.9E-22 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 2.9E-22 T 06-07-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 569 33.199 T 06-07-2017 CDO28_RS04520 2710b417f7707520a7ecb7f2d095c627 595 Pfam PF01336 OB-fold nucleic acid binding domain 21 104 9.3E-17 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 SUPERFAMILY SSF64288 71 244 4.55E-41 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 Pfam PF07702 UTRA domain 104 241 4.6E-35 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 Gene3D G3DSA:1.10.10.10 16 87 3.1E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 83 8.2E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 2.7E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 2.7E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 Gene3D G3DSA:3.40.1410.10 101 237 6.8E-48 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 SMART SM00345 24 83 5.6E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 SUPERFAMILY SSF46785 16 87 2.48E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 19 244 1.8E-95 T 06-07-2017 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 CDO28_RS13640 64ac17dc3bd1f816cbb634845dd1b676 247 SMART SM00866 104 241 1.8E-33 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 SUPERFAMILY SSF50129 7 146 5.35E-37 T 06-07-2017 IPR011032 GroES-like CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 SMART SM00829 16 330 2.1E-53 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 7 331 5.4E-140 T 06-07-2017 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 Gene3D G3DSA:3.40.50.720 152 269 6.7E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 Gene3D G3DSA:3.90.180.10 6 151 3.3E-46 T 06-07-2017 IPR011032 GroES-like CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 104 3.1E-9 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 SUPERFAMILY SSF51735 118 294 8.49E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05780 343f2c9bf734b049b921038515f6cad4 333 Pfam PF00107 Zinc-binding dehydrogenase 157 275 2.8E-30 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS30150 c7efa126936ede80ad027397dc27f7bd 185 SUPERFAMILY SSF52218 5 168 1.18E-29 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS30150 c7efa126936ede80ad027397dc27f7bd 185 Gene3D G3DSA:3.40.50.360 2 177 1.0E-33 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS30150 c7efa126936ede80ad027397dc27f7bd 185 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 5 177 5.1E-76 T 06-07-2017 IPR019912 FMN reductase, MsuE-like KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 CDO28_RS30150 c7efa126936ede80ad027397dc27f7bd 185 Pfam PF03358 NADPH-dependent FMN reductase 4 149 1.8E-30 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS15300 f73d914efe76d96f02a959e6120c82c9 192 PIRSF PIRSF016919 1 192 2.9E-66 T 06-07-2017 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein CDO28_RS15300 f73d914efe76d96f02a959e6120c82c9 192 Pfam PF04955 HupE / UreJ protein 13 189 4.5E-56 T 06-07-2017 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Pfam PF00271 Helicase conserved C-terminal domain 251 355 4.4E-15 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Pfam PF00270 DEAD/DEAH box helicase 54 209 2.4E-16 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Gene3D G3DSA:3.40.50.300 38 222 3.9E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SMART SM00341 561 635 3.3E-18 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Gene3D G3DSA:1.10.150.80 566 634 1.6E-19 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Gene3D G3DSA:3.40.50.300 230 368 3.0E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SUPERFAMILY SSF52540 232 474 2.06E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 39 632 1.7E-227 T 06-07-2017 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Pfam PF00570 HRDC domain 565 631 4.6E-24 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SMART SM00487 46 242 3.6E-31 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SMART SM00490 274 355 6.3E-25 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Pfam PF16124 RecQ zinc-binding 367 429 5.8E-16 T 06-07-2017 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SUPERFAMILY SSF47819 560 634 2.83E-24 T 06-07-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 40 488 4.7E-146 T 06-07-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Pfam PF09382 RQC domain 431 541 2.4E-35 T 06-07-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SUPERFAMILY SSF52540 38 221 8.12E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 SMART SM00956 436 539 1.8E-46 T 06-07-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CDO28_RS15635 c54b36cae52d37e55ba0623d395624cd 636 Gene3D G3DSA:1.10.10.10 369 540 5.8E-55 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 SUPERFAMILY SSF52540 2 242 7.16E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 SUPERFAMILY SSF52540 304 525 2.56E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Gene3D G3DSA:3.40.50.300 123 277 7.6E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Gene3D G3DSA:3.40.50.300 323 531 1.2E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Gene3D G3DSA:3.40.50.300 1 88 7.6E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 SMART SM00382 26 235 7.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 SMART SM00382 349 516 6.6E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Pfam PF12848 ABC transporter 229 312 3.5E-25 T 06-07-2017 IPR032781 ABC-transporter extension domain CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Pfam PF00005 ABC transporter 341 471 4.8E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20785 951c3f8046a6ab8f6972d1283bf690e8 540 Pfam PF00005 ABC transporter 21 190 8.1E-24 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 1.6E-36 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 PRINTS PR00478 Phosphoribulokinase family signature 125 143 1.6E-36 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 PRINTS PR00478 Phosphoribulokinase family signature 163 180 1.6E-36 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 PRINTS PR00478 Phosphoribulokinase family signature 181 204 1.6E-36 T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 SUPERFAMILY SSF52540 5 285 2.88E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 Gene3D G3DSA:3.40.50.300 1 286 9.8E-124 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 163 176 - T 06-07-2017 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CDO28_RS31580 15778a65e8d0cecd1eaaf9d6ca3065d8 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 213 1.7E-70 T 06-07-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.9E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 Gene3D G3DSA:3.40.50.720 1 247 3.6E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 SUPERFAMILY SSF51735 6 247 2.34E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 1.9E-51 T 06-07-2017 CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 0.001 T 06-07-2017 CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29975 f6a7c2b8b29550d962823a8429e3bb3d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14005 920f4054fa8deff3c54034b80e81c60b 284 Pfam PF13624 SurA N-terminal domain 6 90 2.7E-6 T 06-07-2017 CDO28_RS14005 920f4054fa8deff3c54034b80e81c60b 284 SUPERFAMILY SSF109998 27 165 9.42E-18 T 06-07-2017 IPR027304 Trigger factor/SurA domain CDO28_RS14005 920f4054fa8deff3c54034b80e81c60b 284 Gene3D G3DSA:3.10.50.40 135 249 2.7E-42 T 06-07-2017 CDO28_RS14005 920f4054fa8deff3c54034b80e81c60b 284 SUPERFAMILY SSF54534 136 225 3.07E-30 T 06-07-2017 CDO28_RS14005 920f4054fa8deff3c54034b80e81c60b 284 Pfam PF13616 PPIC-type PPIASE domain 134 227 2.1E-23 T 06-07-2017 CDO28_RS20470 c26d4c7a3c58ccf4c9a87077383643d7 431 Gene3D G3DSA:1.20.1250.20 232 422 1.4E-9 T 06-07-2017 CDO28_RS20470 c26d4c7a3c58ccf4c9a87077383643d7 431 Gene3D G3DSA:1.20.1250.20 37 218 2.1E-9 T 06-07-2017 CDO28_RS20470 c26d4c7a3c58ccf4c9a87077383643d7 431 SUPERFAMILY SSF103473 33 427 1.01E-29 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS20470 c26d4c7a3c58ccf4c9a87077383643d7 431 TIGRFAM TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family 33 419 3.9E-194 T 06-07-2017 IPR014090 Siderophore transporter, RhtX/FptX family CDO28_RS20470 c26d4c7a3c58ccf4c9a87077383643d7 431 Pfam PF13000 Acetyl-coenzyme A transporter 1 38 115 4.9E-10 T 06-07-2017 IPR024371 Acetyl-coenzyme A transporter 1 GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 06-07-2017 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 9.8E-16 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 SUPERFAMILY SSF47413 10 68 6.25E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 5.7E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 5.7E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 Pfam PF13377 Periplasmic binding protein-like domain 176 333 5.3E-33 T 06-07-2017 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 SUPERFAMILY SSF53822 70 334 1.07E-57 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 Gene3D G3DSA:3.40.50.2300 63 182 1.1E-27 T 06-07-2017 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 SMART SM00354 10 80 6.0E-25 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 Gene3D G3DSA:1.10.260.40 11 62 5.7E-22 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30445 71ba5d0857897bae8c95e9b73eac2b46 340 Gene3D G3DSA:3.40.50.2300 183 314 4.9E-37 T 06-07-2017 CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 SUPERFAMILY SSF69318 1306 1637 3.4E-7 T 06-07-2017 CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 SUPERFAMILY SSF69318 969 1318 2.09E-9 T 06-07-2017 CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 ProSitePatterns PS00018 EF-hand calcium-binding domain. 641 653 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 SUPERFAMILY SSF69318 1688 1933 6.8E-6 T 06-07-2017 CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 Gene3D G3DSA:1.10.238.10 422 483 4.6E-4 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS25735 378f69c1cd953761ff819a4cac5ab361 2036 Gene3D G3DSA:1.10.238.10 626 657 4.6E-4 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS33995 c1a1ad69afe5adb3586408465c051221 404 Pfam PF11800 Replication protein C C-terminal region 194 396 3.6E-83 T 06-07-2017 IPR021760 Replication protein-C C-terminal CDO28_RS33995 c1a1ad69afe5adb3586408465c051221 404 Pfam PF03428 Replication protein C N-terminal domain 13 187 8.9E-70 T 06-07-2017 IPR005090 Replication protein C CDO28_RS33995 c1a1ad69afe5adb3586408465c051221 404 Gene3D G3DSA:1.10.10.10 92 138 6.1E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Gene3D G3DSA:3.90.550.10 34 259 8.2E-62 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 SUPERFAMILY SSF53448 34 258 4.51E-52 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 267 422 31.767 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 134 141 - T 06-07-2017 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Gene3D G3DSA:3.30.1330.50 266 422 4.4E-65 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 31 423 42.693 T 06-07-2017 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 35 260 2.7E-59 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Pfam PF02542 YgbB family 268 420 1.2E-57 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 35 258 3.3E-76 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 32 268 27.447 T 06-07-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 SUPERFAMILY SSF69765 267 422 1.26E-61 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 268 421 5.1E-58 T 06-07-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS03105 78af10e79dfc64951eebcc62d8ed6cd0 434 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 301 316 - T 06-07-2017 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 SUPERFAMILY SSF52540 252 501 1.56E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 SMART SM00382 45 233 3.5E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 SMART SM00382 294 496 5.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 Pfam PF00005 ABC transporter 287 439 9.7E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 Pfam PF00005 ABC transporter 36 185 1.0E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 SUPERFAMILY SSF52540 21 243 4.28E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 Gene3D G3DSA:3.40.50.300 266 507 2.7E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21470 07064ac9e94842bc99b5fca274f20fd6 530 Gene3D G3DSA:3.40.50.300 20 246 9.1E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00412 Epoxide hydrolase signature 308 330 1.2E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00412 Epoxide hydrolase signature 106 121 1.2E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00412 Epoxide hydrolase signature 274 290 1.2E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00412 Epoxide hydrolase signature 86 104 1.2E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 Pfam PF00561 alpha/beta hydrolase fold 80 314 1.8E-26 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 276 290 2.1E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 121 2.1E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 150 163 2.1E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 Gene3D G3DSA:3.40.50.1820 59 330 9.5E-75 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS14810 d2d03a51c07208e81dfa83c17875388e 333 SUPERFAMILY SSF53474 60 330 2.79E-65 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19470 ee523e39d1e4ed70cedc4d51b3277186 81 Gene3D G3DSA:3.10.20.30 2 77 2.8E-10 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS19470 ee523e39d1e4ed70cedc4d51b3277186 81 SUPERFAMILY SSF54285 1 81 4.67E-11 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDO28_RS19470 ee523e39d1e4ed70cedc4d51b3277186 81 Pfam PF02597 ThiS family 5 81 2.0E-6 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 CDO28_RS09680 abb25963721e9bfd9cd8e11571207804 211 PIRSF PIRSF033303 1 211 1.4E-110 T 06-07-2017 IPR014581 Uncharacterised conserved protein UCP033303 CDO28_RS09680 abb25963721e9bfd9cd8e11571207804 211 Pfam PF07040 Protein of unknown function (DUF1326) 15 194 3.4E-58 T 06-07-2017 IPR009758 Protein of unknown function DUF1326 CDO28_RS04420 ab39a8b272cd86f042cfb0084779dce3 167 Pfam PF07883 Cupin domain 46 117 6.6E-20 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS04420 ab39a8b272cd86f042cfb0084779dce3 167 Gene3D G3DSA:2.60.120.10 8 164 1.2E-25 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS04420 ab39a8b272cd86f042cfb0084779dce3 167 SUPERFAMILY SSF51182 29 150 2.46E-23 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 SUPERFAMILY SSF52821 173 301 2.49E-23 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 Gene3D G3DSA:3.40.250.10 172 301 1.5E-24 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 SMART SM00450 28 153 7.6E-11 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 SMART SM00450 176 297 8.0E-8 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 Pfam PF00581 Rhodanese-like domain 178 293 1.2E-9 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 Pfam PF00581 Rhodanese-like domain 30 149 4.1E-16 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 Gene3D G3DSA:3.40.250.10 22 171 4.9E-31 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS27680 6102da756f20b1919221c73ea68cdc41 305 SUPERFAMILY SSF52821 23 173 2.88E-27 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Pfam PF03459 TOBE domain 267 323 1.2E-12 T 06-07-2017 IPR005116 Transport-associated OB, type 1 CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Gene3D G3DSA:3.40.50.300 3 234 1.6E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Gene3D G3DSA:2.40.50.100 319 333 2.0E-5 T 06-07-2017 CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Gene3D G3DSA:2.40.50.100 242 259 2.0E-5 T 06-07-2017 CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Gene3D G3DSA:2.40.50.140 260 318 1.0E-18 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 SUPERFAMILY SSF52540 4 242 1.39E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 SMART SM00382 28 211 3.2E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 SUPERFAMILY SSF50331 236 330 1.24E-24 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 Pfam PF00005 ABC transporter 22 161 8.8E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15000 d19ec01aacf781829708e07c6f044bef 333 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 Gene3D G3DSA:3.40.50.2300 117 170 3.2E-7 T 06-07-2017 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 SUPERFAMILY SSF47413 2 59 2.48E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 1.8E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 SMART SM00354 3 73 8.2E-10 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 Gene3D G3DSA:1.10.260.40 3 59 5.5E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 SUPERFAMILY SSF53822 113 328 2.57E-28 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 Gene3D G3DSA:3.40.50.2300 171 330 1.4E-28 T 06-07-2017 CDO28_RS32030 7739b65212defed5dcbae9f9d5b64b5e 331 Pfam PF13377 Periplasmic binding protein-like domain 178 329 3.8E-20 T 06-07-2017 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 507 688 1.4E-58 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 Gene3D G3DSA:1.10.287.950 457 661 4.4E-57 T 06-07-2017 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SUPERFAMILY SSF58104 409 689 1.1E-67 T 06-07-2017 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SUPERFAMILY SSF103190 98 194 4.19E-14 T 06-07-2017 IPR029151 Periplasmic sensor domain-like CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SUPERFAMILY SSF158472 308 356 1.1E-8 T 06-07-2017 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 Gene3D G3DSA:3.30.450.20 150 284 2.0E-29 T 06-07-2017 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 Pfam PF00672 HAMP domain 289 357 3.8E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SMART SM00304 389 441 9.9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SMART SM00304 308 361 2.4E-5 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 Pfam PF02743 Cache domain 48 267 3.8E-30 T 06-07-2017 IPR033479 Double Cache domain 1 CDO28_RS06190 4be50d9336e759a3e4f8314fe5390773 707 SMART SM00283 442 689 1.2E-104 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 343 519 4.6E-52 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Gene3D G3DSA:3.40.50.2300 177 304 4.7E-43 T 06-07-2017 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SUPERFAMILY SSF47384 84 144 1.63E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SMART SM00388 78 146 8.2E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Pfam PF00512 His Kinase A (phospho-acceptor) domain 84 144 1.9E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Gene3D G3DSA:1.10.287.130 87 142 2.3E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SUPERFAMILY SSF52172 178 318 1.57E-44 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Pfam PF00072 Response regulator receiver domain 181 293 4.7E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SMART SM00448 179 292 6.8E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 Gene3D G3DSA:3.30.70.1230 336 519 2.1E-61 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SUPERFAMILY SSF55073 336 517 2.04E-55 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS32375 28aa63b3e41f37043d01cc69f33f82ed 520 SMART SM00044 314 510 2.1E-60 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 SUPERFAMILY SSF53187 12 88 1.08E-46 T 06-07-2017 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 SUPERFAMILY SSF53187 182 344 1.08E-46 T 06-07-2017 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 Gene3D G3DSA:3.40.630.10 174 342 3.6E-50 T 06-07-2017 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 Gene3D G3DSA:3.40.630.10 7 77 3.6E-50 T 06-07-2017 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 Pfam PF05343 M42 glutamyl aminopeptidase 53 341 1.5E-74 T 06-07-2017 IPR008007 Peptidase M42 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 Gene3D G3DSA:2.40.30.40 78 173 1.2E-22 T 06-07-2017 IPR023367 Peptidase M42, domain 2 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 SUPERFAMILY SSF101821 78 190 4.88E-25 T 06-07-2017 CDO28_RS32860 34446be2c258ccd243c67084f00274ae 385 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 8 349 2.0E-181 T 06-07-2017 IPR017537 Peptidase M42, hydrolase CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 Pfam PF12838 4Fe-4S dicluster domain 36 80 1.6E-9 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 Pfam PF12838 4Fe-4S dicluster domain 106 153 1.8E-10 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 37 48 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 Gene3D G3DSA:3.30.70.20 76 112 1.4E-7 T 06-07-2017 CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 139 150 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 Gene3D G3DSA:3.30.70.20 113 159 4.3E-16 T 06-07-2017 CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 SUPERFAMILY SSF54862 34 162 1.46E-20 T 06-07-2017 CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24080 bcf02ab61171b122a79ca8aca0f003cf 166 Gene3D G3DSA:3.30.70.20 35 75 1.5E-12 T 06-07-2017 CDO28_RS04745 d8ff75f1572c392c2a3d57eeacc591fc 781 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 11 767 16.906 T 06-07-2017 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 CDO28_RS04745 d8ff75f1572c392c2a3d57eeacc591fc 781 Pfam PF04453 Organic solvent tolerance protein 311 705 5.4E-80 T 06-07-2017 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 CDO28_RS04745 d8ff75f1572c392c2a3d57eeacc591fc 781 Gene3D G3DSA:2.60.450.10 52 206 3.5E-15 T 06-07-2017 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 SMART SM00382 315 508 4.2E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 SMART SM00382 35 235 7.6E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Gene3D G3DSA:3.40.50.300 6 259 5.2E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Gene3D G3DSA:3.40.50.300 277 533 3.3E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 SUPERFAMILY SSF52540 280 530 9.97E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 510 538 5.4E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 273 2.5E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Pfam PF00005 ABC transporter 28 185 8.2E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 Pfam PF00005 ABC transporter 306 458 1.9E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31155 77002f941527fd8b77253db4a21624f1 546 SUPERFAMILY SSF52540 6 257 9.19E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 SUPERFAMILY SSF49503 60 194 5.74E-40 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 ProSitePatterns PS00080 Multicopper oxidases signature 2. 315 326 - T 06-07-2017 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 Pfam PF07731 Multicopper oxidase 216 328 3.7E-21 T 06-07-2017 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 SUPERFAMILY SSF49503 164 327 1.66E-35 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 Pfam PF07732 Multicopper oxidase 81 192 3.1E-37 T 06-07-2017 IPR011707 Multicopper oxidase, type 3 GO:0005507 CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 Gene3D G3DSA:2.60.40.420 39 189 2.9E-39 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 Gene3D G3DSA:2.60.40.420 199 323 5.7E-25 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07645 e655598ebb6ddf405ef663caf85d04af 449 Gene3D G3DSA:2.60.40.420 390 425 5.7E-25 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 Pfam PF08402 TOBE domain 280 348 8.3E-12 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 SMART SM00382 33 216 2.4E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 Gene3D G3DSA:3.40.50.300 8 238 5.6E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 SUPERFAMILY SSF50331 242 348 6.8E-11 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 SUPERFAMILY SSF52540 9 248 1.65E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 Pfam PF00005 ABC transporter 26 166 3.4E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32400 462e3a08ee6db4e908a4598e908a927e 353 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 Gene3D G3DSA:1.10.10.10 6 79 6.3E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 Pfam PF01418 Helix-turn-helix domain, rpiR family 20 78 4.5E-9 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 SUPERFAMILY SSF53697 102 262 2.02E-20 T 06-07-2017 CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 SUPERFAMILY SSF46689 7 79 1.97E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 Gene3D G3DSA:3.40.50.10490 108 245 4.8E-18 T 06-07-2017 CDO28_RS31960 c6a7cb20b91705b716668bbe03bae7d7 296 Pfam PF01380 SIS domain 134 252 8.7E-14 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 197 8.1E-101 T 06-07-2017 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 201 46.015 T 06-07-2017 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 PIRSF PIRSF005624 2 201 1.4E-48 T 06-07-2017 CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 SUPERFAMILY SSF52540 2 197 8.94E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 180 8.7E-37 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS14890 80c49522ec356ddd93bf643203b43555 203 Gene3D G3DSA:3.40.50.300 7 197 1.1E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10160 2a0a492525a4348719c7280980d64f95 228 Gene3D G3DSA:2.160.20.60 20 197 2.9E-35 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS10160 2a0a492525a4348719c7280980d64f95 228 PIRSF PIRSF006519 1 228 4.5E-87 T 06-07-2017 IPR012061 Glutamate synthase, large subunit domain 3 stand-alone protein CDO28_RS10160 2a0a492525a4348719c7280980d64f95 228 Pfam PF01493 GXGXG motif 20 183 1.7E-13 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS10160 2a0a492525a4348719c7280980d64f95 228 SUPERFAMILY SSF69336 5 208 3.01E-44 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS25980 5de104584bfd659f8f569f9b1284c710 168 SUPERFAMILY SSF55068 2 160 1.83E-66 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25980 5de104584bfd659f8f569f9b1284c710 168 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 2 157 34.893 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25980 5de104584bfd659f8f569f9b1284c710 168 Pfam PF01625 Peptide methionine sulfoxide reductase 5 151 2.7E-59 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25980 5de104584bfd659f8f569f9b1284c710 168 Gene3D G3DSA:3.30.1060.10 2 152 3.0E-67 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25980 5de104584bfd659f8f569f9b1284c710 168 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 3 151 6.4E-52 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 Gene3D G3DSA:2.30.22.10 137 194 7.4E-29 T 06-07-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 PRINTS PR00773 GrpE protein signature 57 73 1.1E-27 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 PRINTS PR00773 GrpE protein signature 145 160 1.1E-27 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 PRINTS PR00773 GrpE protein signature 85 100 1.1E-27 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 PRINTS PR00773 GrpE protein signature 172 191 1.1E-27 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 Pfam PF01025 GrpE 26 193 2.6E-54 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 ProSitePatterns PS01071 grpE protein signature. 148 191 - T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 SUPERFAMILY SSF58014 41 137 6.67E-26 T 06-07-2017 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 SUPERFAMILY SSF51064 138 194 8.11E-21 T 06-07-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 Gene3D G3DSA:3.90.20.20 38 136 6.7E-31 T 06-07-2017 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CDO28_RS08655 8db4848b5d15220033398f364a1aab8b 208 Hamap MF_01151 Protein GrpE [grpE]. 3 193 20.438 T 06-07-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 Gene3D G3DSA:3.40.710.10 37 294 7.8E-102 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 SUPERFAMILY SSF56601 37 294 9.94E-76 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 40 64 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 114 139 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 150 174 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 71 88 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 176 201 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 212 227 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 PRINTS PR00118 Beta-lactamase class A signature 229 244 4.2E-61 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS05630 8084480decd913e076039ba9c64a1840 296 Pfam PF13354 Beta-lactamase enzyme family 61 269 3.7E-43 T 06-07-2017 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 SMART SM00065 24 170 5.7E-17 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 SUPERFAMILY SSF51621 428 726 2.31E-90 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 SUPERFAMILY SSF47831 200 320 5.62E-29 T 06-07-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 SUPERFAMILY SSF52009 302 421 2.75E-25 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Gene3D G3DSA:3.50.30.10 310 433 1.4E-29 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Pfam PF13185 GAF domain 24 158 2.5E-15 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 06-07-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Pfam PF00391 PEP-utilising enzyme, mobile domain 330 401 7.1E-16 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 SUPERFAMILY SSF55781 12 158 1.74E-26 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Gene3D G3DSA:3.30.450.40 12 162 8.9E-43 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 430 716 1.6E-87 T 06-07-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 7.0E-16 T 06-07-2017 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 7.0E-16 T 06-07-2017 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 7.0E-16 T 06-07-2017 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 7.0E-16 T 06-07-2017 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Gene3D G3DSA:3.20.20.60 434 744 9.6E-90 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Pfam PF05524 PEP-utilising enzyme, N-terminal 185 303 1.3E-22 T 06-07-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 183 741 3.7E-125 T 06-07-2017 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CDO28_RS14075 a6535fe0a5e40e546d2e4ca4bce37af8 755 Gene3D G3DSA:1.10.274.10 200 309 3.6E-33 T 06-07-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 212 220 5.0E-6 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 5.0E-6 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 164 5.0E-6 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 5.0E-6 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 5.0E-6 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Gene3D G3DSA:3.40.50.80 96 237 5.1E-37 T 06-07-2017 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 SUPERFAMILY SSF52343 94 242 8.91E-33 T 06-07-2017 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00406 Cytochrome B5 reductase signature 116 135 4.7E-10 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00406 Cytochrome B5 reductase signature 153 164 4.7E-10 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 4.7E-10 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 4.7E-10 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 SUPERFAMILY SSF63380 3 105 1.29E-23 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Gene3D G3DSA:2.40.30.10 3 95 3.3E-22 T 06-07-2017 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Pfam PF00175 Oxidoreductase NAD-binding domain 119 225 9.9E-16 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Gene3D G3DSA:3.10.20.30 238 356 3.4E-32 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 305 313 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 SUPERFAMILY SSF54292 236 354 1.06E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 357 1.6E-129 T 06-07-2017 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Pfam PF00970 Oxidoreductase FAD-binding domain 8 103 7.0E-8 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS30480 3fa8bfbe366ca49f261018f65a7de76b 358 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 272 347 9.1E-16 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 403 589 7.5E-57 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SUPERFAMILY SSF158472 210 260 7.06E-9 T 06-07-2017 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SMART SM00283 343 590 5.1E-100 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SUPERFAMILY SSF58104 321 591 2.44E-67 T 06-07-2017 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SMART SM00304 210 263 3.3E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SMART SM00304 291 342 0.24 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 Pfam PF17200 Single Cache domain 2 39 188 2.4E-45 T 06-07-2017 IPR033480 Single Cache domain 2 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 SMART SM01049 33 127 1.6E-41 T 06-07-2017 IPR033480 Single Cache domain 2 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 Gene3D G3DSA:3.30.450.20 22 179 2.0E-55 T 06-07-2017 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 Gene3D G3DSA:1.10.287.950 358 562 2.7E-57 T 06-07-2017 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 Pfam PF00672 HAMP domain 192 259 4.1E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 468 3.2E-45 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 393 3.2E-45 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 470 499 3.2E-45 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS18615 de156183accb45fc1407c93e0baf32ab 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 518 547 3.2E-45 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS25660 703ac4c5155d861be0dcd329762ff703 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 44 189 1.1E-9 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25660 703ac4c5155d861be0dcd329762ff703 222 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 8 183 4.6E-14 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS25660 703ac4c5155d861be0dcd329762ff703 222 SUPERFAMILY SSF56784 6 220 1.26E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25660 703ac4c5155d861be0dcd329762ff703 222 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 7 200 2.1E-61 T 06-07-2017 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 CDO28_RS25660 703ac4c5155d861be0dcd329762ff703 222 Gene3D G3DSA:3.40.50.1000 81 205 1.1E-23 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS04590 e1707cd3ffc3497b975d6ea6958bb481 868 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 554 840 5.1E-98 T 06-07-2017 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal CDO28_RS04590 e1707cd3ffc3497b975d6ea6958bb481 868 SUPERFAMILY SSF55729 661 838 1.12E-17 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04590 e1707cd3ffc3497b975d6ea6958bb481 868 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 36 313 6.4E-9 T 06-07-2017 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CDO28_RS09395 70e7e92ae522162e143fc322a21ba8d5 230 Pfam PF04296 Protein of unknown function (DUF448) 24 99 7.4E-21 T 06-07-2017 IPR007393 Domain of unknown function DUF448 CDO28_RS09395 70e7e92ae522162e143fc322a21ba8d5 230 Gene3D G3DSA:3.30.1230.10 17 108 1.1E-28 T 06-07-2017 IPR007393 Domain of unknown function DUF448 CDO28_RS09395 70e7e92ae522162e143fc322a21ba8d5 230 SUPERFAMILY SSF55315 106 196 3.2E-5 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS09395 70e7e92ae522162e143fc322a21ba8d5 230 SUPERFAMILY SSF64376 19 108 9.81E-25 T 06-07-2017 IPR007393 Domain of unknown function DUF448 CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 SUPERFAMILY SSF46785 16 86 4.88E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 Pfam PF07729 FCD domain 96 213 2.0E-15 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 82 3.9E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 SMART SM00895 92 215 9.0E-10 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 Gene3D G3DSA:1.10.10.10 11 83 8.0E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 Gene3D G3DSA:1.20.120.530 89 227 4.3E-20 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 42 53 4.6E-5 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 53 72 4.6E-5 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 SUPERFAMILY SSF48008 91 220 5.75E-17 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31125 8a88dea70c9c138950dbf73eff188c37 234 SMART SM00345 24 82 3.8E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 Pfam PF00107 Zinc-binding dehydrogenase 152 256 5.0E-31 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 SUPERFAMILY SSF51735 112 266 3.36E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 1.2E-9 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 SMART SM00829 11 323 4.9E-40 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 Gene3D G3DSA:3.40.50.720 147 257 2.3E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 Gene3D G3DSA:3.90.180.10 3 146 2.0E-45 T 06-07-2017 IPR011032 GroES-like CDO28_RS01000 a28df508faff429ff00bbea48a9fa68a 325 SUPERFAMILY SSF50129 3 145 5.03E-37 T 06-07-2017 IPR011032 GroES-like CDO28_RS23180 cadfedf6b2dc5755e2f714c569076efc 161 Pfam PF01575 MaoC like domain 11 131 1.2E-31 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS23180 cadfedf6b2dc5755e2f714c569076efc 161 Gene3D G3DSA:3.10.129.10 7 150 7.0E-32 T 06-07-2017 IPR029069 HotDog domain CDO28_RS23180 cadfedf6b2dc5755e2f714c569076efc 161 SUPERFAMILY SSF54637 7 148 6.93E-34 T 06-07-2017 IPR029069 HotDog domain CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 SUPERFAMILY SSF54506 8 289 8.93E-52 T 06-07-2017 CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 9 270 3.7E-46 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 Pfam PF02567 Phenazine biosynthesis-like protein 9 271 3.9E-42 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 Gene3D G3DSA:3.10.310.10 8 129 1.3E-27 T 06-07-2017 CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 Gene3D G3DSA:3.10.310.10 130 270 9.2E-37 T 06-07-2017 CDO28_RS21210 b5f8f4ab8129ca1d3231bbfa98d30c3c 290 PIRSF PIRSF016184 1 290 2.1E-83 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 SUPERFAMILY SSF52540 263 478 2.24E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 Pfam PF00005 ABC transporter 278 429 6.1E-18 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 Pfam PF00005 ABC transporter 31 174 2.3E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 Gene3D G3DSA:3.40.50.300 17 231 3.9E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 SMART SM00382 40 221 4.8E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 SMART SM00382 286 480 1.1E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 SUPERFAMILY SSF52540 18 233 9.37E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 Gene3D G3DSA:3.40.50.300 276 489 3.1E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33845 633247743876fd5f5b55d3bfb24e151b 505 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33570 d6a8af20f976bc6cb640961f2c95bc28 166 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 109 137 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS33570 d6a8af20f976bc6cb640961f2c95bc28 166 SUPERFAMILY SSF51161 2 160 4.02E-37 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS33570 d6a8af20f976bc6cb640961f2c95bc28 166 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 24 57 1.0E-4 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS33570 d6a8af20f976bc6cb640961f2c95bc28 166 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 135 7.7E-6 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS33570 d6a8af20f976bc6cb640961f2c95bc28 166 Gene3D G3DSA:2.160.10.10 14 158 8.1E-36 T 06-07-2017 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 173 181 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 296 309 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 149 162 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 376 390 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 433 444 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 495 508 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 206 219 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 220 235 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 PRINTS PR00415 Aconitase family signature 282 295 6.0E-40 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Gene3D G3DSA:3.30.499.10 373 577 6.2E-61 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 21 894 0.0 T 06-07-2017 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 ProSitePatterns PS01244 Aconitase family signature 2. 495 508 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Pfam PF00694 Aconitase C-terminal domain 695 823 6.2E-42 T 06-07-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Gene3D G3DSA:3.30.499.10 23 252 2.5E-83 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Gene3D G3DSA:3.20.19.10 640 894 2.6E-79 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Gene3D G3DSA:3.40.1060.10 253 371 2.5E-35 T 06-07-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 ProSitePatterns PS00450 Aconitase family signature 1. 429 445 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 SUPERFAMILY SSF52016 632 893 7.06E-85 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 Pfam PF00330 Aconitase family (aconitate hydratase) 78 564 2.5E-185 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11190 fdc28ae3a9cafcdce0effb1e08d2f4d9 896 SUPERFAMILY SSF53732 5 629 1.96E-225 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS06970 1f9a663b2a2aa08078d1a080ab6f897c 154 Pfam PF02082 Transcriptional regulator 1 81 4.5E-25 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS06970 1f9a663b2a2aa08078d1a080ab6f897c 154 Gene3D G3DSA:1.10.10.10 1 133 5.0E-42 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06970 1f9a663b2a2aa08078d1a080ab6f897c 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 2.5E-34 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS06970 1f9a663b2a2aa08078d1a080ab6f897c 154 SUPERFAMILY SSF46785 2 133 4.83E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06970 1f9a663b2a2aa08078d1a080ab6f897c 154 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 06-07-2017 IPR030489 Transcription regulator Rrf2-type, conserved site CDO28_RS25325 7d6fa047851ac3ec1b7139b3a73afac6 280 Gene3D G3DSA:3.40.50.300 3 240 2.4E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25325 7d6fa047851ac3ec1b7139b3a73afac6 280 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS25325 7d6fa047851ac3ec1b7139b3a73afac6 280 SUPERFAMILY SSF52540 4 234 3.09E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25325 7d6fa047851ac3ec1b7139b3a73afac6 280 SMART SM00382 30 219 1.9E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS25325 7d6fa047851ac3ec1b7139b3a73afac6 280 Pfam PF00005 ABC transporter 21 169 1.2E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16390 c8bfac7f855b4c4f40e701b0c012f1d6 384 Pfam PF01098 Cell cycle protein 21 364 1.6E-80 T 06-07-2017 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 CDO28_RS16390 c8bfac7f855b4c4f40e701b0c012f1d6 384 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 18 363 1.6E-106 T 06-07-2017 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 SUPERFAMILY SSF53850 88 298 3.44E-37 T 06-07-2017 CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 61 1.7E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 Gene3D G3DSA:3.40.190.10 91 178 4.4E-13 T 06-07-2017 CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 Gene3D G3DSA:3.40.190.10 179 263 4.0E-19 T 06-07-2017 CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 Gene3D G3DSA:1.10.10.10 1 87 5.0E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 Pfam PF03466 LysR substrate binding domain 87 293 9.2E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS25245 eb782cab605e0ab3952416dcbe6d2bcc 316 SUPERFAMILY SSF46785 1 110 1.7E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Pfam PF00270 DEAD/DEAH box helicase 629 787 1.5E-15 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Gene3D G3DSA:3.40.50.300 612 808 4.8E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SUPERFAMILY SSF141259 495 570 1.83E-19 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 33 1167 27.653 T 06-07-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SUPERFAMILY SSF52540 12 358 4.6E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SMART SM01058 502 598 2.7E-43 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Gene3D G3DSA:3.30.2060.10 137 209 5.0E-11 T 06-07-2017 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SMART SM00487 622 812 9.4E-30 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SUPERFAMILY SSF143517 1016 1165 9.68E-40 T 06-07-2017 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SUPERFAMILY SSF52540 392 492 3.98E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Gene3D G3DSA:3.40.50.300 809 985 3.2E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Pfam PF02559 CarD-like/TRCF domain 503 596 3.4E-22 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SMART SM00490 848 932 4.6E-20 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SUPERFAMILY SSF52540 673 940 3.0E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 SMART SM00982 1027 1127 9.5E-43 T 06-07-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Pfam PF00271 Helicase conserved C-terminal domain 827 931 2.7E-17 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 Pfam PF03461 TRCF domain 1030 1120 3.9E-25 T 06-07-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CDO28_RS01100 0a134e0aebd43085fc7ef80e03ca29b9 1171 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 152 1100 0.0 T 06-07-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Gene3D G3DSA:3.30.460.10 101 192 2.2E-8 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SUPERFAMILY SSF55021 732 790 2.62E-9 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Pfam PF01909 Nucleotidyltransferase domain 101 173 4.1E-6 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SUPERFAMILY SSF81593 221 334 4.24E-9 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SUPERFAMILY SSF81301 11 202 6.22E-31 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Pfam PF08335 GlnD PII-uridylyltransferase 209 347 1.3E-36 T 06-07-2017 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SUPERFAMILY SSF81891 396 637 2.75E-23 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Gene3D G3DSA:3.30.70.260 841 896 4.5E-14 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Gene3D G3DSA:3.30.70.260 733 783 2.1E-5 T 06-07-2017 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Gene3D G3DSA:1.10.3210.10 464 658 4.6E-29 T 06-07-2017 IPR006674 HD domain CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SMART SM00471 490 637 3.4E-7 T 06-07-2017 IPR003607 HD/PDEase domain CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Pfam PF01966 HD domain 494 608 4.9E-15 T 06-07-2017 IPR006674 HD domain CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 34 922 307.314 T 06-07-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 Pfam PF01842 ACT domain 844 894 6.4E-7 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 PIRSF PIRSF006288 26 923 0.0 T 06-07-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 51 915 0.0 T 06-07-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDO28_RS08560 f0684b303043f3efe3177b7719220299 949 SUPERFAMILY SSF55021 841 911 8.74E-13 T 06-07-2017 CDO28_RS24685 6fd747797c1385267140976335067109 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 9.5E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24685 6fd747797c1385267140976335067109 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 9.5E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24685 6fd747797c1385267140976335067109 256 SUPERFAMILY SSF48008 72 202 9.15E-18 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24685 6fd747797c1385267140976335067109 256 SMART SM00895 76 199 2.6E-9 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS24685 6fd747797c1385267140976335067109 256 SUPERFAMILY SSF46785 4 70 6.55E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24685 6fd747797c1385267140976335067109 256 Gene3D G3DSA:1.10.10.10 3 67 1.3E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24685 6fd747797c1385267140976335067109 256 SMART SM00345 8 66 5.0E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24685 6fd747797c1385267140976335067109 256 Gene3D G3DSA:1.20.120.530 69 202 4.2E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24685 6fd747797c1385267140976335067109 256 Pfam PF07729 FCD domain 76 196 4.1E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS24685 6fd747797c1385267140976335067109 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 66 1.2E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 Gene3D G3DSA:3.40.190.10 92 179 3.6E-11 T 06-07-2017 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.0E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 Pfam PF03466 LysR substrate binding domain 89 287 6.7E-22 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 SUPERFAMILY SSF53850 90 286 7.78E-23 T 06-07-2017 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 Gene3D G3DSA:1.10.10.10 1 81 1.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 SUPERFAMILY SSF46785 1 80 5.26E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 Gene3D G3DSA:3.40.190.10 180 257 5.4E-11 T 06-07-2017 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25970 bc9f44954c5cfef0539b1ee8503c5b6f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 437 582 3.8E-11 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Pfam PF01261 Xylose isomerase-like TIM barrel 20 218 7.5E-37 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Gene3D G3DSA:3.20.20.150 1 268 8.2E-78 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 SUPERFAMILY SSF51658 1 271 1.37E-76 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Gene3D G3DSA:3.10.180.10 280 415 3.1E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 SUPERFAMILY SSF54593 279 617 3.96E-57 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Gene3D G3DSA:3.10.180.10 434 619 8.0E-39 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS30190 c38c7421679ce348409ee3ccc4c246aa 629 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 287 415 5.1E-27 T 06-07-2017 CDO28_RS28035 3af4f7a2223f731b4737b872924feb59 83 SMART SM00530 24 78 4.0E-10 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS28035 3af4f7a2223f731b4737b872924feb59 83 Pfam PF01381 Helix-turn-helix 25 76 2.9E-10 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS28035 3af4f7a2223f731b4737b872924feb59 83 SUPERFAMILY SSF47413 18 80 7.11E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28035 3af4f7a2223f731b4737b872924feb59 83 Gene3D G3DSA:1.10.260.40 21 81 2.3E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 389 2.1E-16 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 SMART SM01086 317 412 1.4E-32 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 310 2.3E-49 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 SUPERFAMILY SSF57716 16 51 1.2E-11 T 06-07-2017 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Gene3D G3DSA:3.40.50.300 294 310 3.4E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Gene3D G3DSA:3.40.50.300 68 255 3.4E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 415 53.941 T 06-07-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 SMART SM00382 113 266 5.6E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 SMART SM00994 15 54 1.7E-24 T 06-07-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Pfam PF06689 ClpX C4-type zinc finger 16 53 2.7E-20 T 06-07-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 13 409 7.7E-201 T 06-07-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 SUPERFAMILY SSF52540 66 402 2.2E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04200 c48338169430026d19cba30bbcf71447 425 Gene3D G3DSA:1.10.8.60 317 417 9.8E-38 T 06-07-2017 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 SUPERFAMILY SSF53223 8 197 2.91E-74 T 06-07-2017 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 SUPERFAMILY SSF51735 203 447 6.9E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 185 4.5E-50 T 06-07-2017 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Gene3D G3DSA:1.10.285.10 7 67 4.4E-26 T 06-07-2017 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Gene3D G3DSA:1.10.285.10 373 447 7.0E-23 T 06-07-2017 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 PIRSF PIRSF000185 22 448 8.5E-120 T 06-07-2017 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Gene3D G3DSA:3.40.192.10 68 188 1.2E-61 T 06-07-2017 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 1.2E-30 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 194 216 1.2E-30 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 236 256 1.2E-30 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 1.2E-30 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 203 446 2.7E-88 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 Gene3D G3DSA:3.40.50.720 210 372 1.3E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21355 9206d27b986ae6ee127defad23442989 448 SMART SM00839 205 446 3.5E-86 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 Pfam PF00033 Cytochrome b/b6/petB 33 220 2.8E-72 T 06-07-2017 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 SUPERFAMILY SSF81648 280 405 6.76E-41 T 06-07-2017 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 SUPERFAMILY SSF81342 18 278 3.92E-104 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 Gene3D G3DSA:1.20.810.10 16 401 5.4E-169 T 06-07-2017 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 276 384 1.4E-42 T 06-07-2017 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 CDO28_RS00170 763acca92d15fa1a1189ad7470b31277 426 PIRSF PIRSF038885 6 415 4.2E-198 T 06-07-2017 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 440 457 0.048 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 317 331 0.44 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 334 351 0.051 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 404 416 8.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 422 439 0.04 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 353 367 0.42 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Gene3D G3DSA:3.40.390.10 16 210 8.3E-39 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 SUPERFAMILY SSF55486 19 207 2.3E-43 T 06-07-2017 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 340 358 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 SMART SM00235 20 209 2.8E-5 T 06-07-2017 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 SUPERFAMILY SSF51120 356 541 6.93E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Gene3D G3DSA:2.150.10.10 317 370 7.8E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Gene3D G3DSA:2.150.10.10 236 278 7.8E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Gene3D G3DSA:2.150.10.10 402 493 2.1E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 Pfam PF08548 Peptidase M10 serralysin C terminal 209 518 2.7E-14 T 06-07-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 SUPERFAMILY SSF51120 209 372 1.7E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 437 455 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 PRINTS PR00313 NodO calcium binding signature 353 361 9.3E-11 T 06-07-2017 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 PRINTS PR00313 NodO calcium binding signature 344 352 9.3E-11 T 06-07-2017 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 PRINTS PR00313 NodO calcium binding signature 450 459 9.3E-11 T 06-07-2017 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 PRINTS PR00313 NodO calcium binding signature 314 325 9.3E-11 T 06-07-2017 CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 349 367 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS20780 c57fa37dd398dbed25a03f2381a1fbed 551 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 428 446 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 102 267 6.5E-33 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 SUPERFAMILY SSF110849 106 183 2.62E-15 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 Pfam PF02195 ParB-like nuclease domain 103 179 1.6E-15 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 Pfam PF07506 RepB plasmid partitioning protein 182 298 2.7E-18 T 06-07-2017 IPR011111 RepB plasmid partition CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 Gene3D G3DSA:3.90.1530.10 106 185 3.9E-14 T 06-07-2017 CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 SMART SM00470 86 180 2.7E-15 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 SUPERFAMILY SSF109709 175 244 2.09E-6 T 06-07-2017 CDO28_RS30275 bab2210d91683258cb3787e091fe0792 353 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 6 348 3.0E-116 T 06-07-2017 IPR017819 Plasmid partitioning protein, RepB CDO28_RS16510 8193b5563a9103c720e375128eb1e64d 291 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 19 290 3.1E-65 T 06-07-2017 CDO28_RS16510 8193b5563a9103c720e375128eb1e64d 291 SUPERFAMILY SSF53335 44 289 3.68E-38 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16510 8193b5563a9103c720e375128eb1e64d 291 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 28.458 T 06-07-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CDO28_RS16510 8193b5563a9103c720e375128eb1e64d 291 PIRSF PIRSF000401 7 291 3.0E-63 T 06-07-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CDO28_RS16510 8193b5563a9103c720e375128eb1e64d 291 Gene3D G3DSA:3.40.50.150 112 286 2.2E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 13 152 4.2E-36 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 450 516 6.9E-8 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 105 119 4.9E-23 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 269 284 4.9E-23 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 240 253 4.9E-23 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 223 4.9E-23 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 SUPERFAMILY SSF53738 277 413 9.03E-36 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Gene3D G3DSA:3.30.310.50 400 542 3.8E-62 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 293 406 1.1E-29 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 SUPERFAMILY SSF53738 3 211 2.79E-50 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 SUPERFAMILY SSF53738 182 290 1.57E-30 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 183 285 6.2E-14 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 SUPERFAMILY SSF55957 408 542 1.33E-48 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Gene3D G3DSA:3.40.120.10 195 281 2.9E-36 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Gene3D G3DSA:3.40.120.10 3 194 7.0E-66 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 106 115 - T 06-07-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS12880 eb8045f91ae1a8f1e167feaff672966b 542 Gene3D G3DSA:3.40.120.10 282 399 5.0E-42 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 Gene3D G3DSA:3.40.50.300 7 204 4.5E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 SMART SM00833 228 322 4.0E-15 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 Gene3D G3DSA:3.30.1220.10 218 323 6.1E-38 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 SUPERFAMILY SSF52540 7 214 1.0E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 SUPERFAMILY SSF90002 228 322 1.7E-27 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 185 3.4E-61 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS11445 cebca5103736d2cb8ec2f4fd17ba7977 329 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 229 321 8.4E-24 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS31925 d798514b3f04140cea56af5264251dca 342 SUPERFAMILY SSF54506 1 333 9.62E-110 T 06-07-2017 CDO28_RS31925 d798514b3f04140cea56af5264251dca 342 Gene3D G3DSA:3.10.310.10 1 155 9.8E-57 T 06-07-2017 CDO28_RS31925 d798514b3f04140cea56af5264251dca 342 Gene3D G3DSA:3.10.310.10 156 322 7.4E-59 T 06-07-2017 CDO28_RS31925 d798514b3f04140cea56af5264251dca 342 PIRSF PIRSF029792 1 336 4.3E-114 T 06-07-2017 IPR008794 Proline racemase family CDO28_RS31925 d798514b3f04140cea56af5264251dca 342 Pfam PF05544 Proline racemase 9 334 1.2E-132 T 06-07-2017 IPR008794 Proline racemase family CDO28_RS05235 eac0a0aec6505ef3f6b86211dfa68a4e 310 Pfam PF00589 Phage integrase family 141 294 2.2E-27 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS05235 eac0a0aec6505ef3f6b86211dfa68a4e 310 Gene3D G3DSA:1.10.443.10 139 299 1.3E-36 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS05235 eac0a0aec6505ef3f6b86211dfa68a4e 310 SUPERFAMILY SSF56349 40 297 2.06E-46 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS08940 59e9c26feefe963b4328c86cd68f9679 124 Gene3D G3DSA:2.40.40.10 32 123 1.7E-9 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS08940 59e9c26feefe963b4328c86cd68f9679 124 Pfam PF03330 Lytic transglycolase 34 119 7.2E-26 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS08940 59e9c26feefe963b4328c86cd68f9679 124 SUPERFAMILY SSF50685 37 123 7.67E-14 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS08940 59e9c26feefe963b4328c86cd68f9679 124 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 36 123 1.1E-34 T 06-07-2017 IPR012997 Rare lipoprotein A CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Gene3D G3DSA:1.10.150.20 618 670 3.1E-20 T 06-07-2017 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Gene3D G3DSA:3.40.1440.10 66 145 2.0E-8 T 06-07-2017 IPR027299 GIY-YIG domain CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Pfam PF02151 UvrB/uvrC motif 257 285 1.8E-8 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Hamap MF_00203 UvrABC system protein C [uvrC]. 52 667 27.272 T 06-07-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 SUPERFAMILY SSF46600 238 291 7.32E-12 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 430 602 1.9E-51 T 06-07-2017 IPR001162 UvrC family homology region CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 SUPERFAMILY SSF82771 66 148 5.75E-21 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Pfam PF01541 GIY-YIG catalytic domain 67 139 4.1E-10 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 58 648 3.9E-166 T 06-07-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 SMART SM00465 65 146 5.6E-17 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 Gene3D G3DSA:4.10.860.10 230 291 6.2E-16 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS04635 93e867e46e3968094a1eed25e8fa249e 674 SUPERFAMILY SSF47781 582 671 3.5E-22 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Gene3D G3DSA:3.40.50.970 409 589 5.5E-44 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 7 615 2.7E-287 T 06-07-2017 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 SUPERFAMILY SSF52518 398 605 7.12E-46 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 222 353 2.1E-37 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 419 572 2.4E-33 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Gene3D G3DSA:3.40.50.970 2 213 1.2E-53 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 SUPERFAMILY SSF52518 5 212 1.39E-31 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 SUPERFAMILY SSF52467 183 383 3.07E-44 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 198 6.7E-38 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 Gene3D G3DSA:3.40.50.1220 214 408 2.3E-48 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS08795 6cc825abe9c2f44e475a312a2cba93e3 617 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 455 474 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CDO28_RS19020 da606752ac5a219a21c56570bd7e6387 121 Pfam PF08808 RES domain 16 98 7.6E-10 T 06-07-2017 IPR014914 RES domain CDO28_RS24215 58e374f58f422fcdad4c0f0c748d2daf 435 Gene3D G3DSA:3.40.190.10 26 153 4.0E-17 T 06-07-2017 CDO28_RS24215 58e374f58f422fcdad4c0f0c748d2daf 435 Gene3D G3DSA:3.40.190.10 154 363 6.0E-45 T 06-07-2017 CDO28_RS24215 58e374f58f422fcdad4c0f0c748d2daf 435 SUPERFAMILY SSF53850 17 430 1.0E-72 T 06-07-2017 CDO28_RS24215 58e374f58f422fcdad4c0f0c748d2daf 435 Pfam PF01547 Bacterial extracellular solute-binding protein 36 346 4.2E-27 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Pfam PF13193 AMP-binding enzyme C-terminal domain 412 487 6.2E-15 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Pfam PF00501 AMP-binding enzyme 14 403 3.9E-101 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Gene3D G3DSA:3.40.50.980 13 164 3.3E-38 T 06-07-2017 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Gene3D G3DSA:2.30.38.10 320 394 7.0E-28 T 06-07-2017 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Gene3D G3DSA:3.30.300.30 398 497 1.4E-29 T 06-07-2017 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 Gene3D G3DSA:3.40.50.980 165 319 1.1E-39 T 06-07-2017 CDO28_RS21125 a9b78660c4912c651466bb6fad5f27fb 508 SUPERFAMILY SSF56801 10 500 1.7E-149 T 06-07-2017 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 155 264 5.4E-10 T 06-07-2017 IPR000014 PAS domain CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 SUPERFAMILY SSF55785 136 262 1.13E-17 T 06-07-2017 IPR000014 PAS domain CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 SUPERFAMILY SSF52172 444 563 1.85E-33 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 SMART SM00448 443 558 1.4E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 Gene3D G3DSA:3.30.450.20 152 263 3.9E-18 T 06-07-2017 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 Gene3D G3DSA:3.30.450.20 17 137 9.8E-5 T 06-07-2017 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 Gene3D G3DSA:3.40.50.2300 442 563 1.2E-35 T 06-07-2017 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 SMART SM00091 152 218 0.0011 T 06-07-2017 IPR000014 PAS domain CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 Pfam PF00072 Response regulator receiver domain 445 554 1.4E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS06510 5696a4679d2bebcc43458bbbc0674b4b 578 Pfam PF08448 PAS fold 158 263 2.2E-15 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS18015 810f8a26fe2d841d1f438a055989865b 102 Gene3D G3DSA:2.60.120.10 28 101 6.7E-11 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS18015 810f8a26fe2d841d1f438a055989865b 102 Pfam PF00027 Cyclic nucleotide-binding domain 30 101 6.3E-10 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS18015 810f8a26fe2d841d1f438a055989865b 102 SUPERFAMILY SSF51206 22 101 9.3E-16 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 Gene3D G3DSA:2.30.40.10 9 76 1.8E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 SUPERFAMILY SSF51556 74 374 2.1E-83 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 SUPERFAMILY SSF51338 375 412 1.69E-32 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 SUPERFAMILY SSF51338 13 74 1.69E-32 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 Gene3D G3DSA:3.20.20.140 77 357 1.7E-37 T 06-07-2017 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 TIGRFAM TIGR01224 hutI: imidazolonepropionase 33 411 3.6E-132 T 06-07-2017 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 Gene3D G3DSA:2.30.40.10 358 392 4.4E-8 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 Pfam PF01979 Amidohydrolase family 71 388 1.7E-18 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS26905 e4e2ec0df2f0682c1d4a8e56954c2417 415 Hamap MF_00372 Imidazolonepropionase [hutI]. 12 413 41.419 T 06-07-2017 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 Pfam PF00905 Penicillin binding protein transpeptidase domain 260 558 2.9E-56 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 SUPERFAMILY SSF56519 85 212 5.23E-34 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 Pfam PF03717 Penicillin-binding Protein dimerisation domain 88 196 2.7E-13 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 SUPERFAMILY SSF56601 234 567 1.67E-80 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 Gene3D G3DSA:3.90.1310.10 155 211 1.8E-11 T 06-07-2017 CDO28_RS16365 a039cec035f7eee775085e601f1457e8 582 Gene3D G3DSA:3.40.710.10 234 561 5.4E-77 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 Gene3D G3DSA:3.40.50.2300 64 171 5.3E-21 T 06-07-2017 CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 SUPERFAMILY SSF47413 10 66 2.53E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 Pfam PF13407 Periplasmic binding protein domain 72 285 1.7E-12 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 SUPERFAMILY SSF53822 69 319 5.78E-29 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 58 3.3E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 Gene3D G3DSA:3.40.50.2300 172 335 1.9E-23 T 06-07-2017 CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 SMART SM00354 8 81 3.0E-15 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32910 091eb3f4728369a5794242d8604ffc4c 356 Gene3D G3DSA:1.10.260.40 9 63 2.4E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS31100 1d9b10378bc1c5a688409fcbc09cb6f2 323 Gene3D G3DSA:3.20.20.30 3 321 1.5E-58 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS31100 1d9b10378bc1c5a688409fcbc09cb6f2 323 SUPERFAMILY SSF51679 4 321 9.29E-51 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS31100 1d9b10378bc1c5a688409fcbc09cb6f2 323 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 4 321 7.9E-83 T 06-07-2017 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related CDO28_RS31100 1d9b10378bc1c5a688409fcbc09cb6f2 323 Pfam PF00296 Luciferase-like monooxygenase 11 294 2.4E-42 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS31100 1d9b10378bc1c5a688409fcbc09cb6f2 323 TIGRFAM TIGR03885 flavin_revert: probable non-F420 flavinoid oxidoreductase 4 320 5.8E-154 T 06-07-2017 IPR023907 Non-F420 flavinoid oxidoreductase CDO28_RS20035 111e7caa9e7176f807c43083a9c16045 402 Pfam PF07690 Major Facilitator Superfamily 39 345 2.4E-26 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS20035 111e7caa9e7176f807c43083a9c16045 402 SUPERFAMILY SSF103473 16 400 1.01E-50 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS20035 111e7caa9e7176f807c43083a9c16045 402 Gene3D G3DSA:1.20.1250.20 27 210 2.4E-24 T 06-07-2017 CDO28_RS20035 111e7caa9e7176f807c43083a9c16045 402 Gene3D G3DSA:1.20.1250.20 223 400 1.1E-10 T 06-07-2017 CDO28_RS09120 83594723b0fe9674ba35598c07fb82f5 119 Pfam PF12893 Putative lumazine-binding 2 116 1.4E-34 T 06-07-2017 CDO28_RS09120 83594723b0fe9674ba35598c07fb82f5 119 Gene3D G3DSA:3.10.450.50 2 118 4.8E-37 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS09120 83594723b0fe9674ba35598c07fb82f5 119 SUPERFAMILY SSF54427 2 118 2.6E-34 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 Gene3D G3DSA:1.10.10.10 154 209 4.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 SMART SM00421 151 208 2.8E-24 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 SUPERFAMILY SSF46894 148 209 2.65E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.1E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.1E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.1E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 SMART SM00448 5 117 1.4E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 3.1E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 Gene3D G3DSA:3.40.50.2300 2 153 2.4E-31 T 06-07-2017 CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 SUPERFAMILY SSF52172 4 130 1.18E-25 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS29495 704d2a040f8478ddec9273d4c020188a 219 Pfam PF00072 Response regulator receiver domain 7 117 1.9E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS08060 8658c6bf471c4fb6d719df2d9abf0e8a 265 SUPERFAMILY SSF53850 34 263 2.68E-33 T 06-07-2017 CDO28_RS08060 8658c6bf471c4fb6d719df2d9abf0e8a 265 Pfam PF13531 Bacterial extracellular solute-binding protein 38 263 6.4E-29 T 06-07-2017 CDO28_RS08060 8658c6bf471c4fb6d719df2d9abf0e8a 265 Gene3D G3DSA:3.40.190.10 33 97 3.7E-6 T 06-07-2017 CDO28_RS08060 8658c6bf471c4fb6d719df2d9abf0e8a 265 Gene3D G3DSA:3.40.190.10 116 260 6.2E-26 T 06-07-2017 CDO28_RS21630 b8ad6269a98bdee2b6fce6bf9912b78d 171 SUPERFAMILY SSF141868 15 168 6.02E-12 T 06-07-2017 IPR001633 EAL domain CDO28_RS21630 b8ad6269a98bdee2b6fce6bf9912b78d 171 Pfam PF00563 EAL domain 14 168 2.9E-12 T 06-07-2017 IPR001633 EAL domain CDO28_RS21630 b8ad6269a98bdee2b6fce6bf9912b78d 171 Gene3D G3DSA:3.20.20.450 15 168 9.1E-12 T 06-07-2017 IPR001633 EAL domain CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 Pfam PF00092 von Willebrand factor type A domain 221 392 4.3E-9 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 9 56 2.3E-9 T 06-07-2017 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 SUPERFAMILY SSF53300 168 182 8.76E-18 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 SUPERFAMILY SSF53300 216 400 8.76E-18 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 SMART SM00327 169 396 0.0032 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 Gene3D G3DSA:3.40.50.410 216 398 1.1E-14 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS12905 496807ec63b68a5889ac3f78c2be3d2b 410 Gene3D G3DSA:3.40.50.410 170 182 1.1E-14 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS13835 bcb4d75ed00cbcf92a9751ce3fcff93a 260 Gene3D G3DSA:3.40.1130.10 60 211 2.2E-15 T 06-07-2017 CDO28_RS13835 bcb4d75ed00cbcf92a9751ce3fcff93a 260 SUPERFAMILY SSF69593 7 210 4.84E-36 T 06-07-2017 CDO28_RS13835 bcb4d75ed00cbcf92a9751ce3fcff93a 260 Pfam PF01553 Acyltransferase 59 183 4.1E-20 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS13835 bcb4d75ed00cbcf92a9751ce3fcff93a 260 SMART SM00563 72 186 9.7E-22 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 Gene3D G3DSA:3.40.630.10 142 459 1.2E-114 T 06-07-2017 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 152 454 2.9E-102 T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 311 318 - T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 PRINTS PR00481 Cytosol aminopeptidase signature 226 243 4.8E-45 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 PRINTS PR00481 Cytosol aminopeptidase signature 285 306 4.8E-45 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 PRINTS PR00481 Cytosol aminopeptidase signature 335 350 4.8E-45 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 PRINTS PR00481 Cytosol aminopeptidase signature 248 269 4.8E-45 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 PRINTS PR00481 Cytosol aminopeptidase signature 307 327 4.8E-45 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 SUPERFAMILY SSF53187 148 459 1.95E-105 T 06-07-2017 CDO28_RS09845 29983777c3e677ec889f2749e13db3c3 463 SUPERFAMILY SSF52949 37 135 3.83E-5 T 06-07-2017 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 93 7.5E-21 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 32.22 T 06-07-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 Pfam PF01479 S4 domain 95 141 7.6E-18 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 SMART SM01390 3 93 5.7E-37 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 6 205 8.0E-71 T 06-07-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 SUPERFAMILY SSF55174 5 205 3.01E-62 T 06-07-2017 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 06-07-2017 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 Gene3D G3DSA:1.10.1050.10 1 96 6.4E-33 T 06-07-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 SMART SM00363 94 158 2.8E-19 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS00330 22a53a21a7dca5063446b01df43d9b0b 205 Gene3D G3DSA:3.10.290.10 97 192 1.7E-30 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS08600 8e7d5c2d485699147d2203455775dc01 152 Gene3D G3DSA:3.30.530.20 1 151 5.0E-56 T 06-07-2017 IPR023393 START-like domain CDO28_RS08600 8e7d5c2d485699147d2203455775dc01 152 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 5.6E-49 T 06-07-2017 IPR010419 Carbon monoxide dehydrogenase subunit G CDO28_RS08600 8e7d5c2d485699147d2203455775dc01 152 SUPERFAMILY SSF55961 1 141 2.2E-40 T 06-07-2017 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 391 545 2.0E-32 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 ProSitePatterns PS01176 Initiation factor 2 signature. 840 862 - T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 SUPERFAMILY SSF50447 791 887 8.05E-31 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 311 361 6.0E-10 T 06-07-2017 IPR006847 Translation initiation factor IF-2, N-terminal CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Gene3D G3DSA:2.40.30.10 791 887 8.0E-36 T 06-07-2017 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 304 889 1.4E-239 T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 15 54 1.8E-6 T 06-07-2017 IPR013575 Initiation factor 2 associated domain, bacterial CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Gene3D G3DSA:2.40.30.10 558 651 5.5E-23 T 06-07-2017 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 887 16.988 T 06-07-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 SUPERFAMILY SSF52540 383 559 8.63E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 SUPERFAMILY SSF52156 673 796 3.92E-36 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Gene3D G3DSA:3.40.50.300 384 546 3.5E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Gene3D G3DSA:3.40.50.10050 690 768 1.0E-23 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 SUPERFAMILY SSF50447 559 643 3.95E-24 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Pfam PF11987 Translation-initiation factor 2 674 779 7.8E-39 T 06-07-2017 IPR023115 Translation initiation factor IF- 2, domain 3 CDO28_RS09390 877d7067f9bacf58218d4c689d0c005f 889 Pfam PF00009 Elongation factor Tu GTP binding domain 392 547 7.4E-33 T 06-07-2017 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 Pfam PF04552 Sigma-54, DNA binding domain 338 497 4.3E-69 T 06-07-2017 IPR007634 RNA polymerase sigma factor 54, DNA-binding CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 Pfam PF04963 Sigma-54 factor, core binding domain 136 323 1.3E-48 T 06-07-2017 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 51 2.2E-16 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 PRINTS PR00045 Sigma-54 factor signature 397 409 2.4E-32 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 PRINTS PR00045 Sigma-54 factor signature 413 424 2.4E-32 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 PRINTS PR00045 Sigma-54 factor signature 472 490 2.4E-32 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 PRINTS PR00045 Sigma-54 factor signature 209 226 2.4E-32 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 496 1.8E-128 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 PIRSF PIRSF000774 1 499 8.9E-140 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 385 404 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS18010 c418f9c7569fb8d76ba74b32ccafc006 508 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 477 484 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS14885 917fe340f0fc9605aa555d7195b1231d 223 PIRSF PIRSF009467 6 223 5.3E-62 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CDO28_RS14885 917fe340f0fc9605aa555d7195b1231d 223 Pfam PF01730 UreF 41 180 3.5E-23 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CDO28_RS14885 917fe340f0fc9605aa555d7195b1231d 223 Hamap MF_01385 Urease accessory protein UreF [ureF]. 9 223 26.671 T 06-07-2017 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CDO28_RS21380 4d17ed457705df299848c905c5b79d78 592 Pfam PF00920 Dehydratase family 45 572 3.8E-152 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS21380 4d17ed457705df299848c905c5b79d78 592 SUPERFAMILY SSF143975 5 379 6.41E-115 T 06-07-2017 CDO28_RS21380 4d17ed457705df299848c905c5b79d78 592 SUPERFAMILY SSF52016 382 575 2.43E-47 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 ProSitePatterns PS00211 ABC transporters family signature. 432 446 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 SMART SM00382 316 509 2.5E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 SMART SM00382 37 237 5.9E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Gene3D G3DSA:3.40.50.300 273 538 9.4E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 SUPERFAMILY SSF52540 8 259 7.38E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 SUPERFAMILY SSF52540 281 531 2.83E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Gene3D G3DSA:3.40.50.300 4 263 8.6E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 511 538 1.4E-5 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 283 3.6E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Pfam PF00005 ABC transporter 308 459 9.7E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24500 0db486d626f3fb010eebb97876e366f2 550 Pfam PF00005 ABC transporter 29 187 2.7E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 Gene3D G3DSA:3.30.590.10 144 464 2.0E-92 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 277 292 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 SMART SM01230 141 397 4.1E-110 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 Pfam PF00120 Glutamine synthetase, catalytic domain 143 472 4.0E-102 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 Gene3D G3DSA:3.10.20.70 35 143 1.7E-15 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 SUPERFAMILY SSF54368 32 139 3.01E-19 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS07100 744ba67db24bbd83f74d6a40a1b68db7 478 SUPERFAMILY SSF55931 142 475 8.73E-107 T 06-07-2017 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 Gene3D G3DSA:3.40.50.2300 8 124 4.4E-25 T 06-07-2017 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 SMART SM00448 5 119 1.0E-13 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 213 3.7E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 Gene3D G3DSA:1.10.10.10 125 216 2.7E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 SMART SM00421 159 216 1.7E-19 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 SUPERFAMILY SSF52172 8 134 7.97E-23 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 Pfam PF00072 Response regulator receiver domain 8 120 9.5E-17 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 192 4.5E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 204 4.5E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 176 4.5E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS24810 d5863f800dad02197583e4ff31d15857 227 SUPERFAMILY SSF46894 155 216 1.53E-18 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 147 4.7E-42 T 06-07-2017 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:3.20.70.20 43 65 5.3E-97 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:3.20.70.20 101 299 5.3E-97 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:3.20.70.20 872 918 5.3E-97 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:3.20.70.20 390 591 5.3E-97 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:3.20.70.20 664 710 5.3E-97 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 SUPERFAMILY SSF75625 296 393 2.35E-13 T 06-07-2017 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 SUPERFAMILY SSF51998 841 925 3.05E-125 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 SUPERFAMILY SSF51998 197 302 3.05E-125 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 SUPERFAMILY SSF51998 394 716 3.05E-125 T 06-07-2017 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 PRINTS PR01183 Ribonucleotide reductase large chain signature 543 565 4.2E-5 T 06-07-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 PRINTS PR01183 Ribonucleotide reductase large chain signature 275 294 4.2E-5 T 06-07-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Gene3D G3DSA:1.10.10.200 300 370 2.6E-4 T 06-07-2017 IPR017856 Integrase, N-terminal zinc-binding domain-like CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Pfam PF02867 Ribonucleotide reductase, barrel domain 807 913 5.0E-17 T 06-07-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 Pfam PF02867 Ribonucleotide reductase, barrel domain 198 749 1.0E-106 T 06-07-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDO28_RS02415 21998ec2971366fb72639d9d329515ea 1263 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 126 753 7.8E-141 T 06-07-2017 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS14915 c0d8d911e1989c087e983ebbfd067550 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 290 6.0E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14915 c0d8d911e1989c087e983ebbfd067550 294 SUPERFAMILY SSF161098 90 274 8.37E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14915 c0d8d911e1989c087e983ebbfd067550 294 Gene3D G3DSA:1.10.3720.10 16 33 1.7E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14915 c0d8d911e1989c087e983ebbfd067550 294 Gene3D G3DSA:1.10.3720.10 77 289 1.7E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 447 4.8E-63 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 Gene3D G3DSA:3.90.76.10 87 180 1.9E-18 T 06-07-2017 CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 SUPERFAMILY SSF53850 47 511 1.05E-103 T 06-07-2017 CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 PIRSF PIRSF002741 13 521 6.8E-65 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 Gene3D G3DSA:3.40.190.10 181 302 3.6E-27 T 06-07-2017 CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 17 39 2.2E-4 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS15955 47033c5bb03358f6e97f3766413491d9 529 Gene3D G3DSA:3.10.105.10 303 490 1.4E-31 T 06-07-2017 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 Gene3D G3DSA:1.10.10.60 277 328 6.3E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 Pfam PF12833 Helix-turn-helix domain 248 326 1.1E-15 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 293 308 8.3E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 308 324 8.3E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 197 3.6E-43 T 06-07-2017 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 SMART SM00342 241 324 6.2E-17 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS24555 a7c2fd1b52d65d25d11ea1cfa62e38ca 347 SUPERFAMILY SSF46689 277 328 2.24E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 Gene3D G3DSA:2.60.40.1610 89 224 1.2E-51 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 Pfam PF06863 Protein of unknown function (DUF1254) 90 219 2.2E-26 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 Gene3D G3DSA:1.10.3360.10 225 309 8.0E-34 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 SUPERFAMILY SSF160935 42 494 1.83E-122 T 06-07-2017 CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 Gene3D G3DSA:2.60.120.600 320 495 4.9E-46 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS02105 1092308f68a268cb3753baba200ff193 495 Pfam PF06742 Protein of unknown function (DUF1214) 373 477 4.7E-27 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS30495 727ce8969b3d83ebfbe3428a27a25a80 94 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 5 94 4.7E-44 T 06-07-2017 IPR009359 Phenylacetic acid degradation B CDO28_RS30495 727ce8969b3d83ebfbe3428a27a25a80 94 Pfam PF06243 Phenylacetic acid degradation B 4 90 3.1E-39 T 06-07-2017 IPR009359 Phenylacetic acid degradation B CDO28_RS30495 727ce8969b3d83ebfbe3428a27a25a80 94 PIRSF PIRSF030200 1 94 7.1E-44 T 06-07-2017 IPR009359 Phenylacetic acid degradation B CDO28_RS10715 cbe9b6e9cb5fa13476929e830202c4a2 66 Pfam PF07896 Protein of unknown function (DUF1674) 27 66 5.1E-14 T 06-07-2017 IPR012875 Protein of unknown function DUF1674 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 ProSitePatterns PS00099 Thiolases active site. 383 396 - T 06-07-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Pfam PF00108 Thiolase, N-terminal domain 4 229 4.9E-47 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 06-07-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 SUPERFAMILY SSF53901 280 401 1.52E-40 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Gene3D G3DSA:3.40.47.10 185 285 5.0E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Gene3D G3DSA:3.40.47.10 4 126 5.0E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Pfam PF02803 Thiolase, C-terminal domain 279 401 5.8E-44 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 400 7.5E-123 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 06-07-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 SUPERFAMILY SSF53901 1 273 3.54E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 PIRSF PIRSF000429 1 402 8.0E-120 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Gene3D G3DSA:3.40.47.10 286 401 3.8E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07910 d09364c89a0a32a72b22705155e58f21 402 Gene3D G3DSA:3.40.47.10 145 184 3.8E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS23420 41727c3766df993f5f8aa19758f7c97c 325 SUPERFAMILY SSF161098 94 308 3.79E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23420 41727c3766df993f5f8aa19758f7c97c 325 Gene3D G3DSA:1.10.3720.10 92 319 2.3E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23420 41727c3766df993f5f8aa19758f7c97c 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 322 1.3E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 SUPERFAMILY SSF46689 247 295 1.48E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 195 239 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 Gene3D G3DSA:1.10.10.60 248 295 1.7E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 Pfam PF12833 Helix-turn-helix domain 216 295 9.3E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 247 289 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 Gene3D G3DSA:1.10.10.60 192 247 2.5E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 SUPERFAMILY SSF46689 194 244 6.09E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 SMART SM00342 210 293 2.4E-28 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 293 9.5E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS27730 46ffd4673549766fd136c953bd9286fc 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 262 277 9.5E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS13780 f8b754b76bc037869d39e8e056b0c82d 212 Pfam PF02592 Putative vitamin uptake transporter 83 195 6.2E-17 T 06-07-2017 IPR003744 Protein of unknown function DUF165 CDO28_RS13780 f8b754b76bc037869d39e8e056b0c82d 212 Pfam PF02592 Putative vitamin uptake transporter 43 85 4.4E-9 T 06-07-2017 IPR003744 Protein of unknown function DUF165 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 Pfam PF08281 Sigma-70, region 4 112 163 6.8E-15 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 Gene3D G3DSA:1.10.10.10 109 168 1.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 40 71 - T 06-07-2017 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 Pfam PF04542 Sigma-70 region 2 22 83 4.6E-17 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 SUPERFAMILY SSF88659 108 167 1.64E-14 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 166 1.0E-24 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 Gene3D G3DSA:1.10.1740.10 15 86 9.1E-20 T 06-07-2017 CDO28_RS29295 75eba199c4fd30d49de8d03efd2b8db4 173 SUPERFAMILY SSF88946 15 103 6.28E-19 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 Pfam PF00696 Amino acid kinase family 3 237 1.5E-44 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 Pfam PF01842 ACT domain 285 340 1.3E-12 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 Gene3D G3DSA:3.40.1160.10 1 264 1.3E-73 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 Gene3D G3DSA:3.30.70.260 288 351 1.1E-5 T 06-07-2017 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 SUPERFAMILY SSF55021 346 422 4.07E-20 T 06-07-2017 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 SUPERFAMILY SSF53633 3 261 2.09E-69 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 Pfam PF13840 ACT domain 354 417 2.4E-13 T 06-07-2017 IPR027795 GATS-like ACT domain CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 SUPERFAMILY SSF55021 266 344 2.15E-20 T 06-07-2017 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 PIRSF PIRSF000726 54 424 1.4E-120 T 06-07-2017 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 420 1.3E-124 T 06-07-2017 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 06-07-2017 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS14070 5beea7fc5ae2debc151c14aab001efdb 424 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 419 5.1E-123 T 06-07-2017 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS14595 9c576a077d8660069acb9d9552ce9294 314 SUPERFAMILY SSF49503 111 256 6.1E-45 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS14595 9c576a077d8660069acb9d9552ce9294 314 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 117 237 4.9E-17 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14595 9c576a077d8660069acb9d9552ce9294 314 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 188 236 - T 06-07-2017 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14595 9c576a077d8660069acb9d9552ce9294 314 Gene3D G3DSA:1.10.287.90 35 78 8.3E-4 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14595 9c576a077d8660069acb9d9552ce9294 314 Gene3D G3DSA:2.60.40.420 109 262 2.5E-42 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 1.6E-21 T 06-07-2017 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 SUPERFAMILY SSF53807 3 512 3.92E-165 T 06-07-2017 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 Gene3D G3DSA:3.40.50.1980 343 467 9.4E-53 T 06-07-2017 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 Gene3D G3DSA:3.40.50.1980 70 214 6.5E-53 T 06-07-2017 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 489 5.7E-115 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 3 513 1.6E-278 T 06-07-2017 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 CDO28_RS23015 aeaa074dbe012adc36b75df2eadceebe 513 Gene3D G3DSA:3.40.50.1980 215 317 5.3E-38 T 06-07-2017 CDO28_RS17115 5e3b9e2c4a0555c5e5b834823b88567a 153 Gene3D G3DSA:1.10.1220.10 92 121 8.1E-4 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS17115 5e3b9e2c4a0555c5e5b834823b88567a 153 SUPERFAMILY SSF143100 3 67 5.36E-18 T 06-07-2017 CDO28_RS17115 5e3b9e2c4a0555c5e5b834823b88567a 153 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 124 2.6E-40 T 06-07-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system CDO28_RS17115 5e3b9e2c4a0555c5e5b834823b88567a 153 SUPERFAMILY SSF47598 92 129 2.49E-6 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS04755 c86011fab720de1deea8ad03b47a0069 342 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 40 330 6.9E-101 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS04755 c86011fab720de1deea8ad03b47a0069 342 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 9 334 1.6E-125 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS04755 c86011fab720de1deea8ad03b47a0069 342 Gene3D G3DSA:3.40.718.10 5 336 3.2E-127 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS04755 c86011fab720de1deea8ad03b47a0069 342 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 5 334 35.856 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS04755 c86011fab720de1deea8ad03b47a0069 342 SUPERFAMILY SSF53659 8 336 1.05E-111 T 06-07-2017 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 Pfam PF00005 ABC transporter 374 522 6.6E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 SMART SM00382 383 567 8.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 SUPERFAMILY SSF90123 14 341 4.97E-36 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 Pfam PF00664 ABC transporter transmembrane region 75 301 2.6E-19 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 SUPERFAMILY SSF52540 348 576 2.51E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 Gene3D G3DSA:1.20.1560.10 15 341 7.1E-33 T 06-07-2017 CDO28_RS27030 d563cca4cfb27adf3baf9a9ae7ebd2ed 597 Gene3D G3DSA:3.40.50.300 356 578 6.2E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 SUPERFAMILY SSF46785 4 62 7.36E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 Pfam PF00455 DeoR C terminal sensor domain 76 230 6.8E-44 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 Gene3D G3DSA:3.30.750.70 76 167 2.3E-5 T 06-07-2017 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-8 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-8 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 SMART SM01134 73 233 1.5E-57 T 06-07-2017 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 SUPERFAMILY SSF100950 75 234 1.57E-21 T 06-07-2017 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 6.8E-17 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 Gene3D G3DSA:1.10.10.10 5 56 7.5E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16120 a9785b314c89bcfac506dee8a396bf37 261 SMART SM00420 6 58 2.8E-16 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Gene3D G3DSA:3.40.50.300 3 203 1.8E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Pfam PF00009 Elongation factor Tu GTP binding domain 2 194 4.3E-59 T 06-07-2017 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Pfam PF00679 Elongation factor G C-terminus 395 479 9.7E-21 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 SUPERFAMILY SSF54980 398 511 1.53E-25 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 SUPERFAMILY SSF50447 149 297 2.29E-28 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Gene3D G3DSA:3.30.70.870 302 400 5.6E-34 T 06-07-2017 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 SMART SM00838 395 483 0.0063 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 138 3.0E-25 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Pfam PF03144 Elongation factor Tu domain 2 217 288 1.4E-14 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Gene3D G3DSA:2.40.30.10 204 301 3.1E-23 T 06-07-2017 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Gene3D G3DSA:2.40.50.250 482 576 9.3E-40 T 06-07-2017 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 SUPERFAMILY SSF52540 3 198 3.87E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 PRINTS PR00315 GTP-binding elongation factor signature 49 57 1.0E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 PRINTS PR00315 GTP-binding elongation factor signature 5 18 1.0E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 PRINTS PR00315 GTP-binding elongation factor signature 69 79 1.0E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 PRINTS PR00315 GTP-binding elongation factor signature 85 96 1.0E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 PRINTS PR00315 GTP-binding elongation factor signature 121 130 1.0E-15 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 SUPERFAMILY SSF54980 301 386 6.83E-14 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 598 2.2E-277 T 06-07-2017 IPR006298 GTP-binding protein TypA GO:0005525 CDO28_RS11615 019d76cf551be5c062c47b667a020898 608 Gene3D G3DSA:3.30.70.240 401 479 8.4E-31 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS33715 327c26cf51524d2e19e7e50c27ede7a4 36 SUPERFAMILY SSF53955 2 25 3.09E-6 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS33715 327c26cf51524d2e19e7e50c27ede7a4 36 Gene3D G3DSA:1.20.141.10 2 25 4.6E-7 T 06-07-2017 CDO28_RS33715 327c26cf51524d2e19e7e50c27ede7a4 36 Pfam PF05838 Glycosyl hydrolase 108 2 25 5.1E-7 T 06-07-2017 IPR008565 Protein of unknown function DUF847 CDO28_RS00995 5e3452c0a96bd7f6603f8c6db0c53e4c 241 PIRSF PIRSF000851 5 241 1.3E-90 T 06-07-2017 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 CDO28_RS00995 5e3452c0a96bd7f6603f8c6db0c53e4c 241 Pfam PF01066 CDP-alcohol phosphatidyltransferase 21 85 6.2E-6 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS28300 b983dff6548dd2118f5320c71a91652b 112 Gene3D G3DSA:2.102.10.10 1 105 3.9E-29 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS28300 b983dff6548dd2118f5320c71a91652b 112 Pfam PF13806 Rieske-like [2Fe-2S] domain 4 101 8.9E-16 T 06-07-2017 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CDO28_RS28300 b983dff6548dd2118f5320c71a91652b 112 SUPERFAMILY SSF50022 3 105 2.1E-34 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS28300 b983dff6548dd2118f5320c71a91652b 112 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 102 1.7E-32 T 06-07-2017 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 Gene3D G3DSA:3.40.50.620 6 227 5.8E-79 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 18 34 1.2E-26 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.2E-26 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 217 227 1.2E-26 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 1.2E-26 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 5 353 38.12 T 06-07-2017 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 Gene3D G3DSA:1.10.240.10 228 347 4.6E-17 T 06-07-2017 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 6 352 1.0E-85 T 06-07-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 SUPERFAMILY SSF52374 7 352 3.01E-88 T 06-07-2017 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 23 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS08545 b982fde6917c1e88d8a5b1619a4fa558 354 Pfam PF00579 tRNA synthetases class I (W and Y) 7 304 3.8E-71 T 06-07-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Pfam PF00342 Phosphoglucose isomerase 44 533 6.5E-213 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Gene3D G3DSA:3.40.50.10490 91 281 3.5E-79 T 06-07-2017 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 38 516 41.02 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Gene3D G3DSA:1.10.1390.10 499 539 3.9E-19 T 06-07-2017 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Gene3D G3DSA:3.40.50.10490 284 498 3.9E-131 T 06-07-2017 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 Gene3D G3DSA:3.40.50.10490 6 90 3.9E-131 T 06-07-2017 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 329 350 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 142 161 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 475 489 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 489 502 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 252 270 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 457 475 6.0E-55 T 06-07-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 489 506 - T 06-07-2017 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 SUPERFAMILY SSF53697 7 538 5.56E-209 T 06-07-2017 CDO28_RS08095 8d197c381b553cf921a3da79bcf4527c 541 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 256 269 - T 06-07-2017 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS32695 55d185fc063c13fc8b734c02a0fcbb83 219 SUPERFAMILY SSF161098 10 196 1.7E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32695 55d185fc063c13fc8b734c02a0fcbb83 219 TIGRFAM TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transporter, permease protein EhuC 5 218 5.1E-113 T 06-07-2017 IPR014342 Ectoine/hydroxyectoine ABC transporter, permease protein EhuC CDO28_RS32695 55d185fc063c13fc8b734c02a0fcbb83 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 105 1.1E-26 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS32695 55d185fc063c13fc8b734c02a0fcbb83 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 211 1.8E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32695 55d185fc063c13fc8b734c02a0fcbb83 219 Gene3D G3DSA:1.10.3720.10 10 211 1.5E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 SMART SM00138 26 294 7.6E-147 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 SUPERFAMILY SSF53335 94 279 2.76E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 Gene3D G3DSA:3.40.50.150 93 291 3.1E-66 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 Pfam PF03705 CheR methyltransferase, all-alpha domain 28 76 2.9E-12 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 Pfam PF01739 CheR methyltransferase, SAM binding domain 94 291 1.0E-69 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PIRSF PIRSF000410 1 296 9.7E-111 T 06-07-2017 IPR026024 Chemotaxis protein methyltransferase CheR CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 Gene3D G3DSA:1.10.155.10 20 92 2.3E-19 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 127 147 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 252 275 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 48 61 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 87 99 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 233 247 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 PRINTS PR00996 Glutamate methyltransferase family signature 162 178 2.5E-49 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS07445 3fa956ac3ca2d29f015111b079919900 302 SUPERFAMILY SSF47757 21 93 6.15E-16 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 SUPERFAMILY SSF50331 236 363 1.68E-22 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Pfam PF03459 TOBE domain 303 356 1.4E-6 T 06-07-2017 IPR005116 Transport-associated OB, type 1 CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Gene3D G3DSA:2.40.50.140 291 350 1.4E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 SUPERFAMILY SSF52540 4 242 1.11E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Pfam PF00005 ABC transporter 20 161 8.1E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Gene3D G3DSA:2.40.50.100 351 363 3.3E-7 T 06-07-2017 CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Gene3D G3DSA:2.40.50.100 239 290 3.3E-7 T 06-07-2017 CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 SMART SM00382 28 212 1.9E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 Gene3D G3DSA:3.40.50.300 3 234 1.7E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24235 fcb22148ab88665bf758d8a66f787d90 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 825 839 1.4E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 882 895 1.4E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 858 876 1.4E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 PRINTS PR00344 Bacterial sensor protein C-terminal signature 843 853 1.4E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Gene3D G3DSA:3.40.50.2300 915 1033 2.2E-28 T 06-07-2017 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SUPERFAMILY SSF52172 918 1039 5.12E-30 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Gene3D G3DSA:3.30.565.10 744 897 6.7E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SMART SM00448 920 1029 6.8E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Gene3D G3DSA:1.10.287.130 668 738 1.3E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SUPERFAMILY SSF47384 662 743 6.67E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Pfam PF00512 His Kinase A (phospho-acceptor) domain 677 742 4.0E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SMART SM00388 676 742 4.2E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SMART SM00387 789 898 1.9E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 SUPERFAMILY SSF55874 732 894 4.71E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 790 895 5.1E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30340 e7016e9b43559a25a1675239c91f99f5 1126 Pfam PF00072 Response regulator receiver domain 922 1029 9.7E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Pfam PF00501 AMP-binding enzyme 70 457 8.3E-60 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 SUPERFAMILY SSF56801 64 551 4.32E-100 T 06-07-2017 CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 ProSitePatterns PS00012 Phosphopantetheine attachment site. 590 605 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Gene3D G3DSA:3.40.50.980 213 371 7.1E-31 T 06-07-2017 CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Gene3D G3DSA:3.40.50.980 66 212 1.3E-28 T 06-07-2017 CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Pfam PF00550 Phosphopantetheine attachment site 569 628 5.3E-10 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 SUPERFAMILY SSF47336 562 628 5.63E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Gene3D G3DSA:1.10.1200.10 573 633 1.9E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34390 746a7c238107e688d47e97c656167a11 643 Gene3D G3DSA:3.30.300.30 452 572 5.6E-19 T 06-07-2017 CDO28_RS27150 1f843ff72f8d56d5e70c80374bae89d3 325 Gene3D G3DSA:3.40.50.1820 165 190 8.9E-5 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS27150 1f843ff72f8d56d5e70c80374bae89d3 325 Gene3D G3DSA:3.40.50.1820 58 120 8.9E-5 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS27150 1f843ff72f8d56d5e70c80374bae89d3 325 SUPERFAMILY SSF53474 52 165 4.31E-7 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS32945 526be6987a5a379e5ddacf4971d11edb 232 SUPERFAMILY SSF53639 8 210 1.1E-62 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS32945 526be6987a5a379e5ddacf4971d11edb 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 13 186 3.0E-47 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS32945 526be6987a5a379e5ddacf4971d11edb 232 SMART SM01007 13 186 3.4E-61 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS32945 526be6987a5a379e5ddacf4971d11edb 232 Gene3D G3DSA:3.40.225.10 10 211 1.1E-59 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS26775 85d3d11730b10d6d09d0ad22a12ec97b 151 SUPERFAMILY SSF102546 1 146 1.02E-40 T 06-07-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS26775 85d3d11730b10d6d09d0ad22a12ec97b 151 Pfam PF05025 RbsD / FucU transport protein family 3 146 4.9E-32 T 06-07-2017 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS26775 85d3d11730b10d6d09d0ad22a12ec97b 151 Gene3D G3DSA:3.40.1650.10 1 147 2.7E-48 T 06-07-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS01220 ed4b11ac888ca469ea850c0ea98536a4 355 Gene3D G3DSA:1.10.150.130 70 165 9.6E-12 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS01220 ed4b11ac888ca469ea850c0ea98536a4 355 Gene3D G3DSA:1.10.443.10 177 342 1.6E-15 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS01220 ed4b11ac888ca469ea850c0ea98536a4 355 Pfam PF00589 Phage integrase family 189 338 8.0E-7 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS01220 ed4b11ac888ca469ea850c0ea98536a4 355 SUPERFAMILY SSF56349 70 342 1.03E-33 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.30.420.40 235 259 1.0E-20 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.30.420.40 326 380 1.0E-20 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 SUPERFAMILY SSF53067 27 222 9.5E-47 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 PIRSF PIRSF003101 17 442 1.3E-123 T 06-07-2017 IPR020823 Cell division protein FtsA GO:0007049 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.30.420.40 193 234 1.0E-17 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.30.420.40 21 115 1.0E-17 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.90.640.10 260 325 8.9E-22 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Pfam PF02491 SHS2 domain inserted in FTSA 112 187 3.9E-19 T 06-07-2017 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 25 405 7.1E-104 T 06-07-2017 IPR020823 Cell division protein FtsA GO:0007049 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 SMART SM00842 25 221 9.7E-82 T 06-07-2017 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 SUPERFAMILY SSF53067 224 406 7.78E-41 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Pfam PF14450 Cell division protein FtsA 27 220 2.2E-9 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Pfam PF14450 Cell division protein FtsA 232 402 3.0E-23 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Gene3D G3DSA:3.30.1490.110 116 190 4.8E-13 T 06-07-2017 CDO28_RS16430 3b913c959f097b06e228b416b309e39d 442 Hamap MF_02033 Cell division protein FtsA [ftsA]. 21 442 26.398 T 06-07-2017 IPR020823 Cell division protein FtsA GO:0007049 CDO28_RS24970 bf686e6f55c00bcb436856e77f93f275 584 SUPERFAMILY SSF51735 433 564 2.01E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24970 bf686e6f55c00bcb436856e77f93f275 584 Pfam PF02254 TrkA-N domain 436 549 1.8E-26 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDO28_RS24970 bf686e6f55c00bcb436856e77f93f275 584 Pfam PF00999 Sodium/hydrogen exchanger family 11 396 8.3E-71 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDO28_RS24970 bf686e6f55c00bcb436856e77f93f275 584 Gene3D G3DSA:3.40.50.720 431 565 2.3E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 Pfam PF02545 Maf-like protein 6 192 3.1E-48 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 Hamap MF_00528 Septum formation protein Maf [maf]. 6 199 31.964 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 SUPERFAMILY SSF52972 5 193 1.7E-54 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 192 5.8E-45 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 Gene3D G3DSA:3.90.950.10 5 196 1.4E-58 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS07585 228f5f415485665ed9d2c65e72e22a1e 206 PIRSF PIRSF006305 1 199 8.4E-48 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 SUPERFAMILY SSF103473 8 393 1.83E-55 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 Gene3D G3DSA:1.20.1250.20 208 388 4.0E-9 T 06-07-2017 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 PRINTS PR01036 Tetracycline resistance protein TetB signature 104 124 6.5E-6 T 06-07-2017 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 PRINTS PR01036 Tetracycline resistance protein TetB signature 159 183 6.5E-6 T 06-07-2017 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 6.5E-6 T 06-07-2017 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 Pfam PF07690 Major Facilitator Superfamily 16 356 4.8E-39 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 15 363 2.4E-64 T 06-07-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 CDO28_RS11300 1ecc38efe19428d8a9090f9c24351f49 412 Gene3D G3DSA:1.20.1250.20 8 190 1.1E-29 T 06-07-2017 CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 SUPERFAMILY SSF46785 25 134 6.94E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 Gene3D G3DSA:1.10.10.10 26 110 1.9E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 SUPERFAMILY SSF53850 114 324 8.84E-28 T 06-07-2017 CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 Gene3D G3DSA:3.40.190.10 202 277 6.5E-13 T 06-07-2017 CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 86 1.1E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 Pfam PF03466 LysR substrate binding domain 112 323 8.7E-27 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS28730 d582a48721dc7042e8e332366252b109 326 Gene3D G3DSA:3.40.190.10 114 201 1.6E-8 T 06-07-2017 CDO28_RS31465 38b306a6a7f90f1802653f4561d3e04d 276 Gene3D G3DSA:3.40.50.1820 1 274 8.3E-70 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS31465 38b306a6a7f90f1802653f4561d3e04d 276 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 273 4.4E-144 T 06-07-2017 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 CDO28_RS31465 38b306a6a7f90f1802653f4561d3e04d 276 SUPERFAMILY SSF53474 1 274 3.24E-81 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS31465 38b306a6a7f90f1802653f4561d3e04d 276 Pfam PF00756 Putative esterase 21 273 1.6E-53 T 06-07-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 443 449 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 658 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 441 455 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 674 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 290 304 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 564 575 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 596 1.1E-27 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Pfam PF00403 Heavy-metal-associated domain 9 54 7.7E-12 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Gene3D G3DSA:3.30.70.100 6 72 7.1E-17 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF55008 6 75 8.12E-14 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Gene3D G3DSA:2.70.150.10 192 341 8.0E-30 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF81653 243 340 1.44E-26 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 ProSitePatterns PS01047 Heavy-metal-associated domain. 12 41 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Gene3D G3DSA:3.40.50.1000 416 455 3.8E-44 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Gene3D G3DSA:3.40.50.1000 567 707 3.8E-44 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF81665 192 244 5.49E-16 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF81665 341 435 5.49E-16 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF81665 688 726 5.49E-16 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Pfam PF00702 haloacid dehalogenase-like hydrolase 437 653 4.5E-39 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF56784 440 459 7.15E-50 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 SUPERFAMILY SSF56784 536 739 7.15E-50 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 213 716 4.8E-84 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Pfam PF00122 E1-E2 ATPase 211 432 3.1E-67 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00941 Cadmium-transporting ATPase signature 225 245 1.0E-9 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00941 Cadmium-transporting ATPase signature 325 339 1.0E-9 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00941 Cadmium-transporting ATPase signature 306 322 1.0E-9 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00941 Cadmium-transporting ATPase signature 10 19 1.0E-9 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 PRINTS PR00941 Cadmium-transporting ATPase signature 245 261 1.0E-9 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 208 741 5.6E-122 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 190 741 4.0E-176 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 190 497 1.2E-99 T 06-07-2017 CDO28_RS09980 b8c8277cef4b16a310d9936797d8a646 743 Gene3D G3DSA:3.40.1110.10 456 566 7.0E-13 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 PRINTS PR00332 Histidine triad family signature 9 25 4.4E-19 T 06-07-2017 IPR001310 Histidine triad (HIT) protein CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 PRINTS PR00332 Histidine triad family signature 30 48 4.4E-19 T 06-07-2017 IPR001310 Histidine triad (HIT) protein CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 PRINTS PR00332 Histidine triad family signature 97 107 4.4E-19 T 06-07-2017 IPR001310 Histidine triad (HIT) protein CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 Gene3D G3DSA:3.30.428.10 7 138 1.7E-38 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 Pfam PF01230 HIT domain 15 111 1.0E-27 T 06-07-2017 IPR001310 Histidine triad (HIT) protein CDO28_RS02925 7101bb7573a09594bac2baec8f1f7628 139 SUPERFAMILY SSF54197 3 139 4.95E-39 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 PRINTS PR00315 GTP-binding elongation factor signature 70 81 4.5E-5 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 PRINTS PR00315 GTP-binding elongation factor signature 54 64 4.5E-5 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 PRINTS PR00315 GTP-binding elongation factor signature 2 15 4.5E-5 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF50447 174 262 1.19E-20 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:2.40.30.10 175 274 1.5E-27 T 06-07-2017 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF52540 2 161 2.35E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:2.40.30.10 275 352 2.2E-5 T 06-07-2017 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 629 1.9E-128 T 06-07-2017 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Pfam PF00009 Elongation factor Tu GTP binding domain 2 155 1.7E-26 T 06-07-2017 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:1.10.10.10 437 500 8.5E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF46785 506 569 7.92E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF46785 437 504 1.41E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Pfam PF03144 Elongation factor Tu domain 2 191 259 3.2E-10 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:1.10.10.10 507 568 3.0E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:1.10.10.10 574 630 2.3E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Pfam PF09107 Elongation factor SelB, winged helix 586 629 5.7E-17 T 06-07-2017 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Pfam PF09106 Elongation factor SelB, winged helix 444 499 2.4E-13 T 06-07-2017 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 Gene3D G3DSA:3.40.50.300 3 161 3.8E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF50465 269 365 3.09E-18 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS20720 af76f1cf16a12bceffdbdf0f99e278e9 666 SUPERFAMILY SSF46785 577 630 1.17E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 4.0E-31 T 06-07-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 4.0E-48 T 06-07-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 260 1.2E-117 T 06-07-2017 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 SUPERFAMILY SSF117143 92 222 3.14E-33 T 06-07-2017 CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 4.2E-26 T 06-07-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 Pfam PF00460 Flagella basal body rod protein 4 34 6.8E-13 T 06-07-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CDO28_RS07325 1aa288ecf0e53e4591244a4e78999883 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 06-07-2017 IPR019776 Flagellar basal body rod protein, conserved site CDO28_RS00280 4bc5e1c6d97d697cc043a57c0b805fa5 551 Pfam PF01740 STAS domain 440 526 3.5E-14 T 06-07-2017 IPR002645 STAS domain CDO28_RS00280 4bc5e1c6d97d697cc043a57c0b805fa5 551 SUPERFAMILY SSF52091 438 545 1.2E-19 T 06-07-2017 IPR002645 STAS domain CDO28_RS00280 4bc5e1c6d97d697cc043a57c0b805fa5 551 Pfam PF00916 Sulfate permease family 22 386 6.7E-79 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CDO28_RS00280 4bc5e1c6d97d697cc043a57c0b805fa5 551 Gene3D G3DSA:3.30.750.24 440 545 3.9E-19 T 06-07-2017 IPR002645 STAS domain CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 PIRSF PIRSF000497 1 411 3.4E-146 T 06-07-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Gene3D G3DSA:3.30.300.10 12 154 8.3E-32 T 06-07-2017 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 410 2.7E-133 T 06-07-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Pfam PF02772 S-adenosylmethionine synthetase, central domain 137 255 1.5E-35 T 06-07-2017 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 121 2.0E-32 T 06-07-2017 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 138 148 - T 06-07-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 283 291 - T 06-07-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Gene3D G3DSA:3.30.300.10 155 257 5.9E-29 T 06-07-2017 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 SUPERFAMILY SSF55973 4 129 1.29E-29 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 SUPERFAMILY SSF55973 257 410 3.1E-65 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Gene3D G3DSA:3.30.300.10 268 410 7.9E-67 T 06-07-2017 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 SUPERFAMILY SSF55973 133 256 1.1E-39 T 06-07-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS08485 bb333aae498dec7be6adb0e3c944cbec 426 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 257 399 1.3E-65 T 06-07-2017 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Gene3D G3DSA:1.20.120.430 373 439 2.8E-49 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Gene3D G3DSA:1.20.120.430 122 182 2.8E-49 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Gene3D G3DSA:1.20.120.430 248 272 2.8E-49 T 06-07-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 SUPERFAMILY SSF116878 121 221 3.14E-43 T 06-07-2017 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 SUPERFAMILY SSF116878 368 439 3.14E-43 T 06-07-2017 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Gene3D G3DSA:3.40.50.300 214 247 3.3E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 18 439 1.8E-76 T 06-07-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 SUPERFAMILY SSF52540 188 360 9.56E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 SUPERFAMILY SSF52540 73 152 9.56E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Gene3D G3DSA:3.30.1360.120 3 121 1.8E-40 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Pfam PF01926 50S ribosome-binding GTPase 219 306 2.7E-18 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 218 346 2.4E-20 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 PRINTS PR00449 Transforming protein P21 ras signature 318 331 1.9E-6 T 06-07-2017 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 PRINTS PR00449 Transforming protein P21 ras signature 258 280 1.9E-6 T 06-07-2017 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 PRINTS PR00449 Transforming protein P21 ras signature 218 239 1.9E-6 T 06-07-2017 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 439 29.492 T 06-07-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 1.9E-34 T 06-07-2017 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 CDO28_RS10650 f74c1411b67899a59629318cfda62a4a 439 Pfam PF12631 MnmE helical domain 123 436 6.6E-45 T 06-07-2017 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 Gene3D G3DSA:2.30.30.60 170 218 1.2E-11 T 06-07-2017 CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 PIRSF PIRSF026673 1 342 2.0E-141 T 06-07-2017 IPR016846 Predicted ion channel, cNMP-binding CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 SUPERFAMILY SSF82689 223 318 2.75E-8 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 Gene3D G3DSA:3.30.70.100 227 308 1.4E-4 T 06-07-2017 CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 SUPERFAMILY SSF50182 153 220 1.24E-12 T 06-07-2017 IPR010920 LSM domain CDO28_RS28555 83b1d75f78e3582e1d6e1e677058db14 343 Pfam PF00924 Mechanosensitive ion channel 114 310 8.3E-30 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS16600 da67b92177ce97093322aa0de7fa5ead 1246 Pfam PF13502 AsmA-like C-terminal region 883 1107 1.3E-17 T 06-07-2017 IPR032712 AsmA-like, C-terminal CDO28_RS16600 da67b92177ce97093322aa0de7fa5ead 1246 PIRSF PIRSF034039 2 1244 0.0 T 06-07-2017 IPR017023 Uncharacterised conserved protein UCP034039 CDO28_RS16600 da67b92177ce97093322aa0de7fa5ead 1246 Pfam PF05170 AsmA family 6 125 6.7E-9 T 06-07-2017 IPR007844 AsmA CDO28_RS05845 347edff4ab7ccc93336032eb0aece14d 63 SUPERFAMILY SSF47413 6 61 5.63E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS05845 347edff4ab7ccc93336032eb0aece14d 63 Gene3D G3DSA:1.10.260.40 6 62 2.7E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS05845 347edff4ab7ccc93336032eb0aece14d 63 SMART SM00530 6 61 1.5E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS05845 347edff4ab7ccc93336032eb0aece14d 63 Pfam PF01381 Helix-turn-helix 13 61 1.0E-11 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS23275 fb6ba4204e2df4ec813bcbfcbbff0984 313 Pfam PF13871 C-terminal domain on Strawberry notch homologue 163 232 5.1E-11 T 06-07-2017 IPR026937 Strawberry notch, helicase C domain CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 SUPERFAMILY SSF53474 53 328 2.06E-64 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 Pfam PF00561 alpha/beta hydrolase fold 77 312 3.4E-26 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 Gene3D G3DSA:3.40.50.1820 56 328 2.4E-72 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 117 8.6E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 146 159 8.6E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS23890 ef6602250e3fd815c40a07313d74870f 329 PRINTS PR00111 Alpha/beta hydrolase fold signature 272 286 8.6E-10 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS06470 a79b879f7d06b631e4c0002599236b98 212 Pfam PF01081 KDPG and KHG aldolase 11 191 1.7E-24 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS06470 a79b879f7d06b631e4c0002599236b98 212 SUPERFAMILY SSF51569 9 204 1.19E-52 T 06-07-2017 CDO28_RS06470 a79b879f7d06b631e4c0002599236b98 212 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 125 138 - T 06-07-2017 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS06470 a79b879f7d06b631e4c0002599236b98 212 Gene3D G3DSA:3.20.20.70 10 206 1.5E-58 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 253 3.5E-68 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS18750 7eef0c647044c7937f43156796227000 260 SMART SM00062 29 256 1.0E-65 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS18750 7eef0c647044c7937f43156796227000 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 9 253 2.7E-78 T 06-07-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 Gene3D G3DSA:3.40.190.10 117 205 3.0E-22 T 06-07-2017 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 52 65 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 SMART SM00079 29 255 2.8E-5 T 06-07-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 Gene3D G3DSA:3.40.190.10 215 257 3.6E-48 T 06-07-2017 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 Gene3D G3DSA:3.40.190.10 28 115 3.6E-48 T 06-07-2017 CDO28_RS18750 7eef0c647044c7937f43156796227000 260 SUPERFAMILY SSF53850 8 257 1.94E-73 T 06-07-2017 CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 228 394 9.2E-43 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 Pfam PF00990 Diguanylate cyclase, GGDEF domain 230 391 2.3E-43 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 SMART SM00052 406 647 8.3E-74 T 06-07-2017 IPR001633 EAL domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 Gene3D G3DSA:3.30.70.270 232 399 2.5E-45 T 06-07-2017 CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 SUPERFAMILY SSF141868 414 649 1.19E-70 T 06-07-2017 IPR001633 EAL domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 Pfam PF00563 EAL domain 414 642 1.9E-62 T 06-07-2017 IPR001633 EAL domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 SUPERFAMILY SSF55073 235 398 6.12E-39 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 Gene3D G3DSA:3.20.20.450 411 648 2.8E-73 T 06-07-2017 IPR001633 EAL domain CDO28_RS12340 c08ece2b06e96e18df056ed519c9fe41 664 SMART SM00267 219 396 4.2E-48 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 364 24.211 T 06-07-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 Pfam PF00953 Glycosyl transferase family 4 100 289 3.9E-31 T 06-07-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 ProSitePatterns PS01348 MraY family signature 2. 195 206 - T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 366 2.0E-121 T 06-07-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.8E-5 T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16380 663c9f07f3098ebcbca58b2a24fb8e4b 366 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 06-07-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 6.0E-21 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 SUPERFAMILY SSF47616 78 197 1.13E-29 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 Pfam PF00043 Glutathione S-transferase, C-terminal domain 111 193 8.7E-13 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 SUPERFAMILY SSF52833 1 84 1.19E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 Gene3D G3DSA:3.40.30.10 2 87 4.6E-31 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32655 735c3bcf8d2a1256922c75614e424a36 208 Gene3D G3DSA:1.20.1050.10 88 192 3.6E-25 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 SMART SM00388 358 423 2.8E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Gene3D G3DSA:3.30.565.10 409 591 1.9E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Gene3D G3DSA:1.10.287.130 350 408 1.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 590 9.5E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Pfam PF00672 HAMP domain 282 353 2.2E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 541 5.7E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 527 5.7E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 577 590 5.7E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 5.7E-13 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 SMART SM00387 475 593 4.6E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 SUPERFAMILY SSF55874 413 591 4.71E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 SMART SM00304 301 357 4.5E-5 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 422 6.5E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Pfam PF13755 Sensor N-terminal transmembrane domain 33 107 1.6E-34 T 06-07-2017 IPR025908 Sensor N-terminal transmembrane domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 Pfam PF13756 Stimulus-sensing domain 134 241 8.6E-37 T 06-07-2017 IPR025919 Stimulus-sensing domain CDO28_RS10420 59cf390c91bdf0ca8ad5a34783fc2ea7 595 SUPERFAMILY SSF47384 341 422 5.1E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Gene3D G3DSA:2.150.10.10 27 55 8.3E-36 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Gene3D G3DSA:2.150.10.10 113 235 8.3E-36 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 172 190 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Pfam PF08548 Peptidase M10 serralysin C terminal 4 282 5.8E-17 T 06-07-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 PRINTS PR00313 NodO calcium binding signature 149 157 3.3E-12 T 06-07-2017 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 PRINTS PR00313 NodO calcium binding signature 185 194 3.3E-12 T 06-07-2017 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 PRINTS PR00313 NodO calcium binding signature 137 148 3.3E-12 T 06-07-2017 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 PRINTS PR00313 NodO calcium binding signature 158 166 3.3E-12 T 06-07-2017 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 122 138 0.39 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 157 174 0.001 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 175 191 0.015 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 139 156 0.0014 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 145 163 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 SUPERFAMILY SSF51120 4 68 1.05E-30 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 SUPERFAMILY SSF51120 125 270 1.05E-30 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS29370 08a1fcb0aee766e8fbea0ad7e0da3fcd 292 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 136 154 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 372 381 - T 06-07-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Gene3D G3DSA:1.10.1140.10 384 503 9.1E-56 T 06-07-2017 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 SUPERFAMILY SSF52540 109 387 2.23E-89 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Hamap MF_01347 ATP synthase subunit beta [atpB]. 33 499 57.458 T 06-07-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 PIRSF PIRSF039072 1 504 2.9E-287 T 06-07-2017 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 162 381 1.5E-62 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 35 499 1.9E-254 T 06-07-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 SUPERFAMILY SSF47917 384 499 5.76E-54 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Gene3D G3DSA:3.40.50.300 109 383 1.1E-110 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 SUPERFAMILY SSF50615 33 107 2.51E-27 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Gene3D G3DSA:2.40.10.170 30 107 1.1E-34 T 06-07-2017 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 38 105 1.5E-24 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11895 f402625c50b6519469cb51e28786d041 504 SMART SM00382 174 444 3.7E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 107 516 1.0E-80 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 Gene3D G3DSA:3.10.105.10 335 570 1.6E-34 T 06-07-2017 CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 SUPERFAMILY SSF53850 52 600 1.99E-113 T 06-07-2017 CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 Gene3D G3DSA:3.40.190.10 221 334 2.2E-23 T 06-07-2017 CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 PIRSF PIRSF002741 4 604 7.8E-93 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS01150 eb59afcef35c8b100a77816e4cec341d 604 Gene3D G3DSA:3.90.76.10 66 220 4.7E-35 T 06-07-2017 CDO28_RS19080 f65ae9bfb836c3cab04aafb506da645f 285 SUPERFAMILY SSF103481 65 166 1.31E-17 T 06-07-2017 CDO28_RS19080 f65ae9bfb836c3cab04aafb506da645f 285 SUPERFAMILY SSF103481 213 285 1.7E-6 T 06-07-2017 CDO28_RS19080 f65ae9bfb836c3cab04aafb506da645f 285 Pfam PF00892 EamA-like transporter family 33 163 6.7E-24 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS19080 f65ae9bfb836c3cab04aafb506da645f 285 Pfam PF00892 EamA-like transporter family 175 285 1.5E-15 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS10745 e73cf700af65e0cd4ad2114d7d8ccd32 463 Gene3D G3DSA:1.20.1250.20 32 225 9.8E-8 T 06-07-2017 CDO28_RS10745 e73cf700af65e0cd4ad2114d7d8ccd32 463 Gene3D G3DSA:1.20.1250.20 258 459 7.8E-11 T 06-07-2017 CDO28_RS10745 e73cf700af65e0cd4ad2114d7d8ccd32 463 SUPERFAMILY SSF103473 32 458 2.09E-32 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS10745 e73cf700af65e0cd4ad2114d7d8ccd32 463 Pfam PF11700 Vacuole effluxer Atg22 like 61 455 4.0E-34 T 06-07-2017 IPR024671 Autophagy-related protein 22-like CDO28_RS31390 9df2387e6a168ec0ed00de96971dbc38 374 Pfam PF13531 Bacterial extracellular solute-binding protein 47 317 2.8E-23 T 06-07-2017 CDO28_RS31390 9df2387e6a168ec0ed00de96971dbc38 374 SUPERFAMILY SSF53850 43 368 6.73E-30 T 06-07-2017 CDO28_RS31390 9df2387e6a168ec0ed00de96971dbc38 374 Gene3D G3DSA:3.40.190.10 143 299 6.5E-36 T 06-07-2017 CDO28_RS31390 9df2387e6a168ec0ed00de96971dbc38 374 Gene3D G3DSA:3.40.190.10 300 336 3.6E-14 T 06-07-2017 CDO28_RS31390 9df2387e6a168ec0ed00de96971dbc38 374 Gene3D G3DSA:3.40.190.10 10 142 3.6E-14 T 06-07-2017 CDO28_RS25130 68a268cf67697494900887ef1253cae9 416 SUPERFAMILY SSF53474 97 278 1.08E-13 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25130 68a268cf67697494900887ef1253cae9 416 Gene3D G3DSA:3.40.50.1820 114 330 3.8E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25130 68a268cf67697494900887ef1253cae9 416 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 98 325 2.2E-85 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS25130 68a268cf67697494900887ef1253cae9 416 PIRSF PIRSF033909 1 356 2.5E-155 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 Pfam PF13404 AsnC-type helix-turn-helix domain 17 56 4.1E-12 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 Gene3D G3DSA:3.30.70.920 80 152 4.2E-12 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 Gene3D G3DSA:1.10.10.10 17 67 2.4E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 43 4.2E-9 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 43 62 4.2E-9 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 16 32 4.2E-9 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 SUPERFAMILY SSF46785 16 70 4.48E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 SUPERFAMILY SSF54909 78 152 7.37E-14 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 SMART SM00344 17 122 1.4E-14 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS29350 f2ded4758ffd8bb04a569b85746067ca 153 Pfam PF01037 Lrp/AsnC ligand binding domain 83 151 4.5E-14 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82693 57 151 1.29E-24 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 27 51 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 55 73 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 343 366 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 370 391 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 476 499 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 451 474 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 PRINTS PR00702 Acriflavin resistance protein family signature 398 422 8.5E-70 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Pfam PF00873 AcrB/AcrD/AcrF family 21 1018 7.0E-268 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:1.10.3850.10 806 1020 9.1E-54 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:1.10.3850.10 286 504 1.8E-54 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82866 803 1022 1.02E-42 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82866 304 502 1.44E-45 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:3.30.70.1430 57 157 5.5E-29 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82714 715 798 9.42E-15 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82693 153 198 1.88E-17 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82693 280 335 1.88E-17 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:3.30.2090.10 715 799 1.1E-15 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:3.30.70.1430 570 661 4.0E-16 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82693 565 663 2.01E-20 T 06-07-2017 CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 SUPERFAMILY SSF82714 200 278 2.35E-13 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS16585 6d520e919edc36b3e2bb7fdc85170357 1044 Gene3D G3DSA:3.30.2090.10 200 278 3.9E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS05920 3a9a977fc05ecc3bed67d4001bb6b382 168 PIRSF PIRSF032064 1 168 3.0E-80 T 06-07-2017 IPR010593 Protein of unknown function DUF1159 CDO28_RS05920 3a9a977fc05ecc3bed67d4001bb6b382 168 Pfam PF05258 Protein of unknown function (DUF721) 13 113 1.6E-19 T 06-07-2017 IPR007922 Protein of unknown function DUF721/UPF0232 CDO28_RS34005 98f42a163c25fb154dcb2599c6599ad5 400 Pfam PF13614 AAA domain 119 298 1.5E-38 T 06-07-2017 IPR025669 AAA domain CDO28_RS34005 98f42a163c25fb154dcb2599c6599ad5 400 Gene3D G3DSA:3.40.50.300 119 398 2.2E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34005 98f42a163c25fb154dcb2599c6599ad5 400 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 17 400 3.5E-192 T 06-07-2017 IPR017818 Plasmid partitioning protein, RepA CDO28_RS34005 98f42a163c25fb154dcb2599c6599ad5 400 SUPERFAMILY SSF52540 120 387 7.92E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 Pfam PF01432 Peptidase family M3 233 684 1.2E-122 T 06-07-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 Gene3D G3DSA:1.10.1370.10 513 685 9.7E-114 T 06-07-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 Gene3D G3DSA:1.10.1370.10 149 355 9.7E-114 T 06-07-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 SUPERFAMILY SSF55486 17 681 1.87E-184 T 06-07-2017 CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 Gene3D G3DSA:1.20.1050.40 18 147 3.4E-20 T 06-07-2017 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal CDO28_RS10815 f9f79e6f79f1d4c1acacec0ccddbaa94 687 Gene3D G3DSA:3.40.390.10 365 512 2.2E-49 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 SUPERFAMILY SSF88946 19 104 4.71E-15 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 Pfam PF04542 Sigma-70 region 2 28 90 1.1E-10 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 SUPERFAMILY SSF88659 111 173 2.16E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 172 1.1E-21 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 Gene3D G3DSA:1.10.1740.10 19 92 4.3E-17 T 06-07-2017 CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 Gene3D G3DSA:1.10.10.10 111 174 9.5E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16780 42ce646669596b3be5d9ed09c8c5275b 184 Pfam PF08281 Sigma-70, region 4 115 168 6.2E-14 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 SUPERFAMILY SSF53955 33 337 4.5E-87 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 Pfam PF13406 Transglycosylase SLT domain 44 330 1.3E-86 T 06-07-2017 IPR031304 Transglycosylase SLT domain 2 CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 SUPERFAMILY SSF47090 337 405 1.1E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 Gene3D G3DSA:1.10.101.10 339 405 1.2E-12 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 Gene3D G3DSA:1.10.530.10 85 141 4.9E-43 T 06-07-2017 CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 Gene3D G3DSA:1.10.530.10 222 336 4.9E-43 T 06-07-2017 CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 Pfam PF01471 Putative peptidoglycan binding domain 351 405 7.1E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16285 ec13da7d1e266e6407f2c7cfea8c20cd 405 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 43 335 3.8E-107 T 06-07-2017 IPR011970 Lytic murein transglycosylase CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 7.5E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 7.5E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 7.5E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.5E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 7.5E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 Gene3D G3DSA:3.40.50.720 6 226 6.1E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 Pfam PF00106 short chain dehydrogenase 8 192 1.1E-47 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14410 93e24b8537407f5462239b22da045684 242 SUPERFAMILY SSF51735 6 234 1.21E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14410 93e24b8537407f5462239b22da045684 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS30025 4c5e884126b174c7d07e242d3dd243c3 200 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 12 196 1.7E-60 T 06-07-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 CDO28_RS30025 4c5e884126b174c7d07e242d3dd243c3 200 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 11 198 3.2E-64 T 06-07-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 CDO28_RS30025 4c5e884126b174c7d07e242d3dd243c3 200 PIRSF PIRSF020680 1 200 1.6E-70 T 06-07-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 CDO28_RS30025 4c5e884126b174c7d07e242d3dd243c3 200 SUPERFAMILY SSF159709 18 198 1.96E-60 T 06-07-2017 CDO28_RS08330 1e6cf4e77c2d4e36d171d0f7cdf894ed 217 Pfam PF01926 50S ribosome-binding GTPase 36 163 3.7E-20 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS08330 1e6cf4e77c2d4e36d171d0f7cdf894ed 217 SUPERFAMILY SSF52540 31 212 8.41E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08330 1e6cf4e77c2d4e36d171d0f7cdf894ed 217 Gene3D G3DSA:3.40.50.300 30 212 3.2E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08330 1e6cf4e77c2d4e36d171d0f7cdf894ed 217 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 2 215 26.187 T 06-07-2017 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CDO28_RS08330 1e6cf4e77c2d4e36d171d0f7cdf894ed 217 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 19 211 9.2E-61 T 06-07-2017 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Pfam PF01266 FAD dependent oxidoreductase 10 369 2.9E-59 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 SUPERFAMILY SSF51905 9 228 1.81E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 SUPERFAMILY SSF51905 330 416 1.81E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 SUPERFAMILY SSF54373 228 329 5.1E-30 T 06-07-2017 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.50.50.60 145 227 1.3E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.50.50.60 6 86 1.3E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.50.50.60 330 388 1.3E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.30.70.1400 505 571 1.8E-26 T 06-07-2017 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 706 800 6.1E-20 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 SUPERFAMILY SSF103025 422 721 1.22E-98 T 06-07-2017 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Pfam PF01571 Aminomethyltransferase folate-binding domain 430 700 1.9E-77 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.30.1360.120 572 677 3.1E-23 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.30.1360.120 425 504 6.1E-14 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:2.40.30.110 720 800 1.5E-21 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 SUPERFAMILY SSF101790 724 814 1.14E-19 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Pfam PF16350 FAD dependent oxidoreductase central domain 372 427 7.3E-20 T 06-07-2017 IPR032503 FAD dependent oxidoreductase, central domain CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.30.9.10 90 144 4.3E-52 T 06-07-2017 CDO28_RS15880 72ff7597174e933447eb452ff44ab437 815 Gene3D G3DSA:3.30.9.10 228 329 4.3E-52 T 06-07-2017 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 SUPERFAMILY SSF50331 238 354 6.32E-25 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Pfam PF00005 ABC transporter 19 163 1.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Gene3D G3DSA:2.40.50.140 283 338 6.3E-7 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Gene3D G3DSA:2.40.50.100 340 353 1.2E-7 T 06-07-2017 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Gene3D G3DSA:2.40.50.100 241 282 1.2E-7 T 06-07-2017 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Pfam PF08402 TOBE domain 279 346 7.6E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 Gene3D G3DSA:3.40.50.300 3 233 9.3E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 SMART SM00382 28 212 1.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24240 79a2da2e0664980088d30b313eda7c4c 358 SUPERFAMILY SSF52540 4 243 8.67E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 SUPERFAMILY SSF53901 274 393 1.84E-40 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 PIRSF PIRSF000429 1 395 1.5E-112 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Pfam PF00108 Thiolase, N-terminal domain 7 265 6.2E-89 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 06-07-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 393 1.6E-126 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 SUPERFAMILY SSF53901 7 272 2.52E-76 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Gene3D G3DSA:3.40.47.10 279 394 9.1E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Gene3D G3DSA:3.40.47.10 145 197 9.1E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Pfam PF02803 Thiolase, C-terminal domain 274 393 2.9E-39 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Gene3D G3DSA:3.40.47.10 198 278 3.3E-67 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24545 45fa301cb8b42f9c8a134694b20c8946 396 Gene3D G3DSA:3.40.47.10 7 126 3.3E-67 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Gene3D G3DSA:3.40.50.300 280 543 1.6E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 SUPERFAMILY SSF52540 284 534 2.04E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Gene3D G3DSA:3.40.50.300 5 258 3.8E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 264 0.0042 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 515 547 8.7E-9 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Pfam PF00005 ABC transporter 313 463 7.3E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 Pfam PF00005 ABC transporter 25 184 5.5E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 SMART SM00382 34 242 4.7E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 SMART SM00382 321 513 2.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13020 5eb6386e8451977f4bd417e4156c9176 567 SUPERFAMILY SSF52540 5 255 3.79E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 Pfam PF00155 Aminotransferase class I and II 141 440 4.9E-14 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 Gene3D G3DSA:3.40.640.10 130 345 1.4E-48 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 Gene3D G3DSA:1.10.10.10 12 79 2.0E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 SMART SM00345 19 78 2.2E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 6.7E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 SUPERFAMILY SSF46785 12 82 1.75E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32680 ac6bb0cc34b6d34ceb89c0dbfd45493f 461 SUPERFAMILY SSF53383 73 448 6.12E-66 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 70 7.2E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 SMART SM00345 12 70 9.0E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 SUPERFAMILY SSF48008 75 207 1.62E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 Gene3D G3DSA:1.20.120.530 73 208 1.1E-29 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 SUPERFAMILY SSF46785 9 89 4.36E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 Pfam PF07729 FCD domain 80 202 3.5E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 SMART SM00895 80 203 3.4E-15 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14170 50818ab1d756b4ced0033ef175108df1 225 Gene3D G3DSA:1.10.10.10 10 71 1.1E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 Gene3D G3DSA:1.10.10.10 3 84 8.7E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 Gene3D G3DSA:3.40.190.10 92 177 6.8E-22 T 06-07-2017 CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.9E-17 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 Gene3D G3DSA:3.40.190.10 178 261 1.1E-25 T 06-07-2017 CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 Pfam PF03466 LysR substrate binding domain 89 294 2.8E-43 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 SUPERFAMILY SSF53850 88 297 8.32E-44 T 06-07-2017 CDO28_RS20790 e61fc4ef0c2fc9fb8ca0a9c748372d0b 299 SUPERFAMILY SSF46785 4 84 8.17E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 SUPERFAMILY SSF51182 68 194 2.52E-20 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 Gene3D G3DSA:1.10.260.40 14 80 2.3E-22 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 Gene3D G3DSA:2.60.120.10 81 193 1.4E-19 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 SMART SM00530 20 75 7.3E-18 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 Pfam PF01381 Helix-turn-helix 21 73 2.5E-15 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS09200 08f51255f39d73a594d1f71f094466ce 197 SUPERFAMILY SSF47413 15 80 6.17E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 SMART SM00345 26 85 3.8E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 Pfam PF07729 FCD domain 111 230 6.8E-28 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 SUPERFAMILY SSF46785 18 89 1.37E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 Gene3D G3DSA:1.20.120.530 105 243 6.6E-32 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 SUPERFAMILY SSF48008 107 238 7.85E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 85 1.2E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 Gene3D G3DSA:1.10.10.10 19 88 8.9E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 SMART SM00895 110 232 9.0E-18 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.5E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS29615 4db39c9df47926eccfbbfdb5158d2cda 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.5E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 Gene3D G3DSA:3.40.190.80 154 256 1.3E-22 T 06-07-2017 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.6E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 206 230 2.6E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.6E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 2.6E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 2.6E-22 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 SUPERFAMILY SSF56655 5 256 2.62E-70 T 06-07-2017 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 5 256 1.1E-98 T 06-07-2017 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 Pfam PF00459 Inositol monophosphatase family 14 255 1.3E-45 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13000 2a83d785cd6c8b44e29dd28e75c6e036 259 Gene3D G3DSA:3.30.540.10 7 153 1.1E-37 T 06-07-2017 CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 Gene3D G3DSA:1.10.1200.10 1 76 5.4E-24 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 Pfam PF00550 Phosphopantetheine attachment site 9 70 9.0E-14 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 37 72 4.0E-5 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 4 74 1.2E-23 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 SUPERFAMILY SSF47336 4 77 8.24E-18 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS26070 c40ef9851fbc15fafefbaa95cb0e5cba 82 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 18.15 T 06-07-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 98 228 2.8E-13 T 06-07-2017 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 80 2.3E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 SUPERFAMILY SSF48498 96 230 1.33E-23 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 PRINTS PR00400 Tetracycline repressor protein signature 213 227 4.0E-11 T 06-07-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 PRINTS PR00400 Tetracycline repressor protein signature 48 71 4.0E-11 T 06-07-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 PRINTS PR00400 Tetracycline repressor protein signature 101 120 4.0E-11 T 06-07-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 SUPERFAMILY SSF46689 29 89 3.74E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08270 2e258f679646d3a5d0c968ddb351ac45 231 Gene3D G3DSA:1.10.357.10 24 229 4.0E-52 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS05640 f4b97918d8ea392d8557e948217edf63 167 Pfam PF00583 Acetyltransferase (GNAT) family 72 149 1.8E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS05640 f4b97918d8ea392d8557e948217edf63 167 SUPERFAMILY SSF55729 10 154 5.83E-29 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS05640 f4b97918d8ea392d8557e948217edf63 167 Gene3D G3DSA:3.40.630.30 18 151 1.6E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 PIRSF PIRSF001586 1 223 2.4E-85 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 SMART SM01211 1 221 7.1E-122 T 06-07-2017 CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 219 41.896 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 SUPERFAMILY SSF52317 1 219 6.88E-72 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 219 2.5E-95 T 06-07-2017 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 203 1.1E-38 T 06-07-2017 CDO28_RS00400 7eefc9842d48ea1481aa4b1272ee9690 223 Gene3D G3DSA:3.40.50.880 1 219 4.2E-38 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS10405 7ec77ad67e6147d9588133691652fb62 144 SUPERFAMILY SSF75620 10 104 1.65E-8 T 06-07-2017 CDO28_RS10405 7ec77ad67e6147d9588133691652fb62 144 Pfam PF00472 RF-1 domain 10 138 4.4E-23 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDO28_RS10405 7ec77ad67e6147d9588133691652fb62 144 Gene3D G3DSA:3.30.160.200 8 110 2.3E-29 T 06-07-2017 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 77 99 4.3E-12 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 211 230 4.3E-12 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 46 67 4.3E-12 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 120 145 4.3E-12 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 191 210 4.3E-12 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33690 7f2a68d8f34291f93d031cf0e564e15b 274 Pfam PF01061 ABC-2 type transporter 28 233 4.5E-12 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Pfam PF04898 Glutamate synthase central domain 491 778 1.0E-116 T 06-07-2017 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Gene3D G3DSA:3.20.20.70 480 824 1.1E-113 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Pfam PF01645 Conserved region in glutamate synthase 841 1213 6.9E-155 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Pfam PF00310 Glutamine amidotransferases class-II 39 463 1.7E-187 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Pfam PF01493 GXGXG motif 1293 1479 1.3E-82 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 SUPERFAMILY SSF51395 478 1248 9.36E-263 T 06-07-2017 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Gene3D G3DSA:3.60.20.10 39 474 4.1E-187 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 SUPERFAMILY SSF56235 39 465 1.7E-157 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Gene3D G3DSA:2.160.20.60 1267 1559 7.4E-108 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 Gene3D G3DSA:3.20.20.70 888 1256 2.4E-180 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 SUPERFAMILY SSF69336 1506 1553 1.44E-92 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS18110 5491584ee9e96faa4a2820dd05ec2cf6 1567 SUPERFAMILY SSF69336 1262 1478 1.44E-92 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS29855 e60c9bc1edc953de6aac1210fea60bd8 309 SUPERFAMILY SSF53822 22 306 3.33E-87 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29855 e60c9bc1edc953de6aac1210fea60bd8 309 Gene3D G3DSA:3.40.50.2300 22 140 2.2E-32 T 06-07-2017 CDO28_RS29855 e60c9bc1edc953de6aac1210fea60bd8 309 Pfam PF13407 Periplasmic binding protein domain 23 284 1.6E-60 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS29855 e60c9bc1edc953de6aac1210fea60bd8 309 Gene3D G3DSA:3.40.50.2300 141 305 7.1E-53 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 8 32 6.7E-12 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 6.7E-12 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 391 410 6.7E-12 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 99 119 6.7E-12 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 154 178 6.7E-12 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 8 411 3.1E-77 T 06-07-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 Gene3D G3DSA:1.20.1250.20 7 186 5.1E-29 T 06-07-2017 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 Pfam PF07690 Major Facilitator Superfamily 9 400 1.7E-48 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 SUPERFAMILY SSF103473 239 446 5.75E-60 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 SUPERFAMILY SSF103473 4 188 5.75E-60 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS06800 d6f6818e8ff05239d44e7c75c8b979a5 470 Gene3D G3DSA:1.20.1250.20 247 446 1.1E-13 T 06-07-2017 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 343 2.3E-99 T 06-07-2017 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 Gene3D G3DSA:3.30.930.10 10 344 3.9E-123 T 06-07-2017 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 SUPERFAMILY SSF46589 12 99 2.25E-19 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.4E-21 T 06-07-2017 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 344 44.873 T 06-07-2017 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 Pfam PF01409 tRNA synthetases class II core domain (F) 92 343 5.4E-102 T 06-07-2017 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 CDO28_RS09130 321d7cdbbdd860bebd52f81e173b119c 360 SUPERFAMILY SSF55681 97 344 1.12E-77 T 06-07-2017 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 13 498 83.124 T 06-07-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 306 318 - T 06-07-2017 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 PIRSF PIRSF000130 2 499 4.8E-201 T 06-07-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 Gene3D G3DSA:3.20.20.70 12 496 9.2E-199 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 13 466 1.3E-196 T 06-07-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SUPERFAMILY SSF54631 98 215 8.59E-31 T 06-07-2017 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 Pfam PF00571 CBS domain 163 212 2.1E-7 T 06-07-2017 IPR000644 CBS domain CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 Pfam PF00571 CBS domain 98 154 9.4E-11 T 06-07-2017 IPR000644 CBS domain CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SMART SM00116 101 156 6.9E-12 T 06-07-2017 IPR000644 CBS domain CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SMART SM00116 169 217 1.4E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SUPERFAMILY SSF51412 11 95 2.49E-121 T 06-07-2017 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SUPERFAMILY SSF51412 228 489 2.49E-121 T 06-07-2017 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 SMART SM01240 12 485 0.0 T 06-07-2017 CDO28_RS06790 11ae47cf7d94391a66de5ff52740e6d4 500 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 485 1.9E-155 T 06-07-2017 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Gene3D G3DSA:2.60.120.10 153 275 1.0E-22 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Pfam PF07883 Cupin domain 201 270 1.5E-18 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 SUPERFAMILY SSF46955 9 77 6.41E-17 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 SUPERFAMILY SSF47413 97 162 2.41E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Gene3D G3DSA:1.10.1660.10 9 76 3.2E-17 T 06-07-2017 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Gene3D G3DSA:1.10.260.40 94 152 8.7E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Pfam PF13411 MerR HTH family regulatory protein 9 77 1.7E-19 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 SMART SM00530 103 158 4.2E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 SMART SM00422 9 78 1.6E-18 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 SUPERFAMILY SSF51182 151 276 7.36E-30 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS27010 f992b727e190870e99c5343c55b0be03 276 Pfam PF13560 Helix-turn-helix domain 100 156 2.0E-10 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 678 686 - T 06-07-2017 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PIRSF PIRSF001174 2 777 0.0 T 06-07-2017 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 SMART SM00464 13 205 1.6E-75 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 572 774 6.2E-99 T 06-07-2017 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Gene3D G3DSA:1.10.8.60 503 586 3.8E-31 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 SMART SM00382 351 495 2.6E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 SUPERFAMILY SSF52540 317 587 1.18E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 TIGRFAM TIGR00763 lon: endopeptidase La 15 773 2.4E-303 T 06-07-2017 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Gene3D G3DSA:3.40.50.300 314 502 5.9E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 355 491 1.5E-21 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 SUPERFAMILY SSF88697 15 204 1.44E-47 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Gene3D G3DSA:3.30.230.10 592 772 2.7E-74 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 204 5.5E-41 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 SUPERFAMILY SSF54211 597 772 8.34E-58 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 597 613 3.5E-56 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 728 746 3.5E-56 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 3.5E-56 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 675 694 3.5E-56 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 359 378 3.5E-56 T 06-07-2017 CDO28_RS04195 664ddd63e7c31e0a6bfbb3cbf33315b8 806 Hamap MF_01973 Lon protease [lon]. 14 774 72.477 T 06-07-2017 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 SUPERFAMILY SSF46785 2 92 2.61E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 Pfam PF01037 Lrp/AsnC ligand binding domain 69 140 3.3E-17 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 SMART SM00344 2 111 1.2E-38 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 SUPERFAMILY SSF54909 63 150 6.17E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 6.8E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 6.8E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 6.8E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 Gene3D G3DSA:3.30.70.920 55 137 1.3E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 Gene3D G3DSA:1.10.10.10 3 51 3.1E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16890 fbfe20dc3e73b2294175ecdf77e3c768 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 1.6E-15 T 06-07-2017 CDO28_RS30530 447d4d278756527be7097aed0a61066a 337 SUPERFAMILY SSF161098 103 313 4.06E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30530 447d4d278756527be7097aed0a61066a 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 330 1.7E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30530 447d4d278756527be7097aed0a61066a 337 Gene3D G3DSA:1.10.3720.10 101 326 8.7E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.8E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 SUPERFAMILY SSF51735 6 256 8.12E-77 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 Gene3D G3DSA:3.40.50.720 6 256 1.4E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 254 8.6E-62 T 06-07-2017 CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 6.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 6.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14335 0203ccf9397bc83d8fdeb45c3c22b747 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 6.4E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 Gene3D G3DSA:3.40.50.2020 157 283 6.4E-49 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 310 3.4E-118 T 06-07-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 117 1.1E-50 T 06-07-2017 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 SUPERFAMILY SSF53271 66 300 8.09E-63 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 Gene3D G3DSA:3.40.50.2020 1 156 3.1E-78 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 125 140 - T 06-07-2017 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 SMART SM01400 1 117 2.4E-82 T 06-07-2017 CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 1 310 48.936 T 06-07-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDO28_RS15480 a42f748bade3ac4559c7fc691de500b1 310 Pfam PF00156 Phosphoribosyl transferase domain 148 245 1.2E-22 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 219 270 4.0E-16 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF00384 Molybdopterin oxidoreductase 274 674 3.6E-33 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SUPERFAMILY SSF54862 75 213 4.6E-37 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:3.10.20.30 2 60 8.0E-7 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SUPERFAMILY SSF50692 739 842 1.37E-19 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:3.30.70.20 195 220 4.3E-4 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SMART SM00929 83 123 1.8E-21 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:3.30.70.20 93 194 3.0E-12 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF01568 Molydopterin dinucleotide binding domain 740 828 8.5E-15 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 669 2.5E-146 T 06-07-2017 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 148 159 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 122 1.6E-17 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 222 239 - T 06-07-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 06-07-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 06-07-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:3.40.50.740 505 721 5.0E-49 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:3.40.50.740 274 346 5.0E-49 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:2.20.25.90 221 271 2.3E-18 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 147 157 - T 06-07-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 1.7E-18 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SUPERFAMILY SSF53706 208 722 1.7E-95 T 06-07-2017 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SMART SM00926 217 271 1.7E-15 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 SUPERFAMILY SSF54292 1 74 3.03E-19 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Pfam PF12838 4Fe-4S dicluster domain 147 202 9.4E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS24730 575f1a22e0a3b2d195385208c89646d5 853 Gene3D G3DSA:2.40.40.20 728 819 2.1E-15 T 06-07-2017 CDO28_RS29385 112a6b7e7ce3b319ac14f866b3b65a12 719 SUPERFAMILY SSF51445 73 228 3.16E-16 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS29385 112a6b7e7ce3b319ac14f866b3b65a12 719 SUPERFAMILY SSF51445 299 407 3.16E-16 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS29385 112a6b7e7ce3b319ac14f866b3b65a12 719 Gene3D G3DSA:3.20.20.80 73 225 1.6E-21 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29385 112a6b7e7ce3b319ac14f866b3b65a12 719 Gene3D G3DSA:3.20.20.80 296 404 1.6E-21 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29385 112a6b7e7ce3b319ac14f866b3b65a12 719 Gene3D G3DSA:3.20.20.80 239 294 8.2E-5 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 SMART SM00862 145 216 8.5E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 SUPERFAMILY SSF52172 1 128 4.7E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 1.4E-24 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 SUPERFAMILY SSF46894 119 217 4.82E-28 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 SMART SM00448 1 112 1.1E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 Gene3D G3DSA:1.10.10.10 122 218 1.8E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 Gene3D G3DSA:3.40.50.2300 1 120 6.5E-38 T 06-07-2017 CDO28_RS05450 9ed5182946aa099738f8140eafdd5de7 223 Pfam PF00072 Response regulator receiver domain 3 112 2.3E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 Gene3D G3DSA:3.40.50.1980 45 257 2.3E-62 T 06-07-2017 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 SUPERFAMILY SSF53720 42 444 8.04E-57 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 21 448 33.052 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 Pfam PF00815 Histidinol dehydrogenase 36 445 2.5E-130 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PIRSF PIRSF000099 12 451 3.0E-161 T 06-07-2017 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 247 279 - T 06-07-2017 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 49 73 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 247 268 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 341 366 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 153 179 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 269 288 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 382 400 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 218 243 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 PRINTS PR00083 Histidinol dehydrogenase signature 188 214 8.4E-69 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS19975 de24f7ca1846393056658a8cd97786e6 456 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 49 445 2.6E-125 T 06-07-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 Pfam PF01012 Electron transfer flavoprotein domain 4 170 4.4E-35 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 SUPERFAMILY SSF52402 3 180 3.56E-52 T 06-07-2017 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 2.9E-34 T 06-07-2017 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 SUPERFAMILY SSF52467 188 308 9.81E-46 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 Gene3D G3DSA:3.40.50.620 1 179 5.9E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 SMART SM00893 3 181 1.3E-48 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 Gene3D G3DSA:3.40.50.1220 184 309 2.5E-59 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 06-07-2017 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CDO28_RS24385 f7c1a0583e31fa6be8a3b93c1196573f 309 PIRSF PIRSF000089 1 309 5.7E-101 T 06-07-2017 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 SUPERFAMILY SSF52374 5 227 1.55E-151 T 06-07-2017 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 SUPERFAMILY SSF52374 430 681 1.55E-151 T 06-07-2017 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 5 876 22.79 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Pfam PF08264 Anticodon-binding domain of tRNA 716 839 2.4E-19 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 222 412 9.3E-67 T 06-07-2017 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Gene3D G3DSA:1.10.730.10 661 812 9.6E-38 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 876 3.0E-304 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 SUPERFAMILY SSF50677 228 414 1.15E-43 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Gene3D G3DSA:3.40.50.620 438 588 1.5E-153 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Gene3D G3DSA:3.40.50.620 631 660 1.5E-153 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Gene3D G3DSA:3.40.50.620 4 227 1.5E-153 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Gene3D G3DSA:3.90.740.10 228 437 1.1E-37 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 SUPERFAMILY SSF47323 675 876 5.05E-32 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 631 671 5.4E-8 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 172 4.0E-25 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 431 587 1.1E-8 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 501 519 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 186 199 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 216 235 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 128 145 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 539 561 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 572 582 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS10685 fb4d082a940af8311d8a9b6e8caa263d 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 154 170 2.0E-45 T 06-07-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 SUPERFAMILY SSF46785 2 62 1.04E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 Gene3D G3DSA:1.10.10.10 1 59 2.0E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 30 6.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 9 20 6.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 6.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23480 508db1e760bc15ede328ecd04bf85657 103 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 53 1.3E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 SUPERFAMILY SSF53328 86 282 2.62E-60 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PIRSF PIRSF036480 1 282 2.9E-110 T 06-07-2017 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 Gene3D G3DSA:3.40.50.170 86 282 1.8E-54 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 Gene3D G3DSA:3.30.70.260 1 81 1.9E-21 T 06-07-2017 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 5.2E-49 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 Pfam PF00551 Formyl transferase 86 263 1.1E-38 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 46.687 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 SUPERFAMILY SSF55021 4 82 9.58E-16 T 06-07-2017 CDO28_RS10110 6a2ae0a4f0cbe740fce5a031c2ae83a5 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 3.7E-98 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 SUPERFAMILY SSF58104 320 600 1.09E-65 T 06-07-2017 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 598 3.1E-54 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 Pfam PF00672 HAMP domain 200 262 2.2E-7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 SMART SM00283 352 599 1.7E-95 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 SUPERFAMILY SSF158472 221 265 1.11E-6 T 06-07-2017 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 SMART SM00304 299 351 0.0067 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 SMART SM00304 218 271 0.03 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS16525 0be81aeddd25d650f4ade11bfb1eff81 689 Gene3D G3DSA:1.10.287.950 366 571 3.7E-53 T 06-07-2017 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 135 146 - T 06-07-2017 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Gene3D G3DSA:1.10.300.10 102 196 4.6E-29 T 06-07-2017 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Gene3D G3DSA:3.90.170.10 268 426 2.2E-68 T 06-07-2017 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 06-07-2017 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 SUPERFAMILY SSF52540 1 426 2.02E-168 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 SMART SM00788 3 425 2.7E-285 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Gene3D G3DSA:3.40.440.10 1 93 6.5E-69 T 06-07-2017 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Gene3D G3DSA:3.40.440.10 197 267 6.5E-69 T 06-07-2017 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 430 1.9E-157 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 210.251 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS13480 cafe06a3fec2430ab81569e47998874f 432 Pfam PF00709 Adenylosuccinate synthetase 4 424 5.6E-170 T 06-07-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 237 40.512 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 SUPERFAMILY SSF64005 5 231 1.18E-85 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 236 1.5E-77 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 182 199 - T 06-07-2017 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 236 3.4E-81 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDO28_RS02875 b10a2adb65f4088890e6817c28bd61bc 247 Gene3D G3DSA:3.40.1180.10 4 239 2.7E-97 T 06-07-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDO28_RS33150 109ca4d4274bb1425ab0b4a29fa4b298 254 Gene3D G3DSA:3.20.20.150 7 253 4.2E-31 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS33150 109ca4d4274bb1425ab0b4a29fa4b298 254 Pfam PF01261 Xylose isomerase-like TIM barrel 23 166 5.5E-16 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS33150 109ca4d4274bb1425ab0b4a29fa4b298 254 SUPERFAMILY SSF51658 10 242 7.05E-28 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 14 483 5.5E-172 T 06-07-2017 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 Gene3D G3DSA:3.90.1300.10 1 487 3.2E-175 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 Pfam PF01425 Amidase 25 473 4.1E-147 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 SUPERFAMILY SSF75304 3 489 1.03E-155 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 485 92.181 T 06-07-2017 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS03890 614a9c023cd31c0f5c94971ad7eff5be 493 ProSitePatterns PS00571 Amidases signature. 157 188 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CDO28_RS29795 bb4f5f566c8d01323f871a0159d08885 137 SUPERFAMILY SSF51182 23 129 3.61E-16 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS29795 bb4f5f566c8d01323f871a0159d08885 137 Pfam PF07883 Cupin domain 49 122 3.7E-13 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS29795 bb4f5f566c8d01323f871a0159d08885 137 Gene3D G3DSA:2.60.120.10 46 126 7.7E-17 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 ProSitePatterns PS01125 ROK family signature. 220 247 - T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 Pfam PF00480 ROK family 87 383 1.4E-40 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 Gene3D G3DSA:3.30.420.40 83 225 9.3E-31 T 06-07-2017 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 SUPERFAMILY SSF53067 83 385 8.3E-46 T 06-07-2017 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 SUPERFAMILY SSF46785 7 74 5.09E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 Pfam PF12802 MarR family 9 58 6.4E-8 T 06-07-2017 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 Gene3D G3DSA:3.30.420.40 226 366 5.9E-34 T 06-07-2017 CDO28_RS11350 978bf6f6317cccfdf717b9efa3d98562 400 Gene3D G3DSA:1.10.10.10 13 77 2.3E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 355 5.7E-138 T 06-07-2017 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 Pfam PF03459 TOBE domain 295 355 6.6E-13 T 06-07-2017 IPR005116 Transport-associated OB, type 1 CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 SMART SM00382 23 210 4.2E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 Gene3D G3DSA:2.40.50.100 281 351 2.5E-17 T 06-07-2017 CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 Gene3D G3DSA:3.40.50.300 23 224 1.3E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 SUPERFAMILY SSF52540 11 226 1.39E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 SUPERFAMILY SSF50331 238 354 3.74E-20 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12455 58c9c7e1af5e914a05a9eadfd12e737b 357 Pfam PF00005 ABC transporter 23 160 1.0E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11620 adab0b7aee601bc033b6c5d6f974c44a 168 Gene3D G3DSA:3.40.630.30 4 167 1.5E-38 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11620 adab0b7aee601bc033b6c5d6f974c44a 168 SUPERFAMILY SSF55729 5 158 1.35E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11620 adab0b7aee601bc033b6c5d6f974c44a 168 Pfam PF00583 Acetyltransferase (GNAT) family 67 144 9.6E-10 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 528 8.0E-20 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 SUPERFAMILY SSF56801 7 540 1.57E-145 T 06-07-2017 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Gene3D G3DSA:3.30.300.30 438 541 3.9E-30 T 06-07-2017 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Gene3D G3DSA:3.40.50.980 195 349 6.3E-26 T 06-07-2017 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Gene3D G3DSA:3.40.50.980 31 194 3.9E-33 T 06-07-2017 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Gene3D G3DSA:2.30.38.10 357 431 1.1E-20 T 06-07-2017 CDO28_RS13980 8927a33c39122b85e1c0db7745e2e5c7 548 Pfam PF00501 AMP-binding enzyme 32 440 1.6E-82 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 Gene3D G3DSA:3.40.50.970 5 322 7.9E-127 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 SUPERFAMILY SSF52922 533 662 1.09E-34 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 7 661 5.3E-264 T 06-07-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 334 1.3E-155 T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 SUPERFAMILY SSF52518 5 321 1.26E-117 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 Gene3D G3DSA:3.40.50.970 328 530 1.6E-64 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 SUPERFAMILY SSF52518 356 523 1.63E-57 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 Pfam PF02779 Transketolase, pyrimidine binding domain 358 523 2.6E-40 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 SMART SM00861 356 526 4.9E-55 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS14320 f1aa1f274fc773dcf007d74d1622f3c8 664 Gene3D G3DSA:3.40.50.920 539 663 2.5E-37 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Gene3D G3DSA:3.30.70.270 345 513 8.4E-56 T 06-07-2017 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Gene3D G3DSA:3.30.450.20 48 164 9.1E-17 T 06-07-2017 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SUPERFAMILY SSF55781 162 333 2.84E-25 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Gene3D G3DSA:3.30.450.40 165 339 2.3E-21 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Gene3D G3DSA:3.20.20.450 520 769 1.0E-103 T 06-07-2017 IPR001633 EAL domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SMART SM00052 516 762 3.1E-132 T 06-07-2017 IPR001633 EAL domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SUPERFAMILY SSF141868 522 768 7.32E-93 T 06-07-2017 IPR001633 EAL domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SMART SM00065 189 341 3.6E-12 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Pfam PF00563 EAL domain 522 757 2.0E-74 T 06-07-2017 IPR001633 EAL domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SMART SM00267 333 506 1.0E-61 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 PIRSF PIRSF005925 53 772 7.8E-185 T 06-07-2017 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SUPERFAMILY SSF55785 47 165 9.95E-18 T 06-07-2017 IPR000014 PAS domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 342 505 9.3E-44 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 SUPERFAMILY SSF55073 349 508 3.06E-48 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Pfam PF13185 GAF domain 192 332 7.7E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Pfam PF00990 Diguanylate cyclase, GGDEF domain 344 502 6.3E-48 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 Pfam PF08448 PAS fold 58 168 5.2E-21 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS05745 a83df5bdee7077addcf4b9cc1cbc811d 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 50 173 1.6E-13 T 06-07-2017 IPR000014 PAS domain CDO28_RS10720 5d220e869b8bd869cf782dd109c9d1a9 319 Hamap MF_00188 Protease HtpX [htpX]. 3 277 28.897 T 06-07-2017 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 CDO28_RS10720 5d220e869b8bd869cf782dd109c9d1a9 319 Gene3D G3DSA:3.30.2010.10 55 146 4.1E-34 T 06-07-2017 CDO28_RS10720 5d220e869b8bd869cf782dd109c9d1a9 319 Pfam PF01435 Peptidase family M48 72 277 3.7E-38 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDO28_RS31175 07c2b0b01ddac07adef95c3df3b65a6c 573 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 121 131 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS31175 07c2b0b01ddac07adef95c3df3b65a6c 573 Pfam PF00920 Dehydratase family 38 554 1.7E-175 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS31175 07c2b0b01ddac07adef95c3df3b65a6c 573 SUPERFAMILY SSF143975 5 373 1.01E-120 T 06-07-2017 CDO28_RS31175 07c2b0b01ddac07adef95c3df3b65a6c 573 SUPERFAMILY SSF52016 375 560 3.37E-58 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 Pfam PF01312 FlhB HrpN YscU SpaS Family 9 349 2.3E-110 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 Gene3D G3DSA:3.40.1690.10 221 356 1.9E-53 T 06-07-2017 IPR029025 Type III secretion system substrate exporter, C-terminal CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 355 7.7E-131 T 06-07-2017 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 SUPERFAMILY SSF160544 247 351 1.96E-36 T 06-07-2017 IPR029025 Type III secretion system substrate exporter, C-terminal CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 8.8E-39 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 210 228 8.8E-39 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 230 247 8.8E-39 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 304 325 8.8E-39 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS07385 9704965dc2014eb2beed4583963cef89 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 274 289 8.8E-39 T 06-07-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 Pfam PF02779 Transketolase, pyrimidine binding domain 43 203 6.9E-33 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 Pfam PF02780 Transketolase, C-terminal domain 218 339 2.4E-24 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 Gene3D G3DSA:3.40.50.970 43 218 3.8E-49 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 SMART SM00861 40 204 5.8E-45 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 SUPERFAMILY SSF52518 37 205 2.84E-47 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 Gene3D G3DSA:3.40.50.920 219 348 1.3E-33 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS00850 af84ba106ccfd3508bf8f4c441e01f2a 348 SUPERFAMILY SSF52922 212 348 1.83E-31 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 Pfam PF00924 Mechanosensitive ion channel 622 817 1.7E-48 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 SUPERFAMILY SSF82689 732 827 5.1E-24 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 690 724 - T 06-07-2017 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 SUPERFAMILY SSF82861 577 659 1.7E-10 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 Gene3D G3DSA:2.30.30.60 676 725 1.3E-17 T 06-07-2017 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 Gene3D G3DSA:3.30.70.100 733 815 4.6E-21 T 06-07-2017 CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 SUPERFAMILY SSF50182 661 725 2.88E-17 T 06-07-2017 IPR010920 LSM domain CDO28_RS05865 9a91119e5fac7558e7005f13a6b2c999 871 Pfam PF12607 Protein of unknown function (DUF3772) 177 230 1.0E-10 T 06-07-2017 IPR022249 Domain of unknown function DUF3772 CDO28_RS32465 616348209d21651e6957c3ebcd0f3886 126 Gene3D G3DSA:3.30.1330.40 11 123 2.5E-30 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS32465 616348209d21651e6957c3ebcd0f3886 126 SUPERFAMILY SSF55298 8 123 1.88E-29 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS32465 616348209d21651e6957c3ebcd0f3886 126 Pfam PF01042 Endoribonuclease L-PSP 12 122 1.1E-23 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 72 4.6E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 SMART SM00345 14 72 1.8E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 Gene3D G3DSA:1.10.10.10 4 73 2.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 SUPERFAMILY SSF48008 79 211 1.36E-20 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 SUPERFAMILY SSF46785 2 76 2.09E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 Gene3D G3DSA:1.20.120.530 75 216 1.5E-30 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 SMART SM00895 82 206 2.6E-8 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32165 d36d8690f80c2d4c75d17fb44cb9159e 219 Pfam PF07729 FCD domain 82 203 2.3E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS17190 5c5082ed2b80049fdc05e94168f04136 172 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 95 161 2.4E-15 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS17190 5c5082ed2b80049fdc05e94168f04136 172 Gene3D G3DSA:1.10.1750.10 93 161 5.7E-14 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS17190 5c5082ed2b80049fdc05e94168f04136 172 SMART SM00760 94 164 1.8E-17 T 06-07-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDO28_RS17190 5c5082ed2b80049fdc05e94168f04136 172 SUPERFAMILY SSF48295 94 161 1.26E-11 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS15665 691585dbe5ef1aa79eddbd0348ad1442 189 SUPERFAMILY SSF53955 22 159 8.23E-23 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS15665 691585dbe5ef1aa79eddbd0348ad1442 189 Gene3D G3DSA:1.10.530.10 44 159 3.2E-11 T 06-07-2017 CDO28_RS15665 691585dbe5ef1aa79eddbd0348ad1442 189 Pfam PF01464 Transglycosylase SLT domain 44 164 1.2E-4 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 Pfam PF00005 ABC transporter 34 184 6.3E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 SUPERFAMILY SSF52540 5 256 5.98E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 268 7.0E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 Gene3D G3DSA:3.40.50.300 2 260 6.8E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20980 e1f2492ff2d6b0a0788907b432e1328a 320 SMART SM00382 42 234 6.3E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30300 34fd214ff19d17135f5bc51fd648da5e 537 Pfam PF02653 Branched-chain amino acid transport system / permease component 245 519 1.9E-56 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS30300 34fd214ff19d17135f5bc51fd648da5e 537 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 243 533 7.2E-133 T 06-07-2017 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type CDO28_RS33685 818523b074dddf5877822e67fde532c6 266 Gene3D G3DSA:3.20.20.60 54 246 3.1E-48 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS33685 818523b074dddf5877822e67fde532c6 266 Pfam PF02548 Ketopantoate hydroxymethyltransferase 72 243 1.1E-37 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS33685 818523b074dddf5877822e67fde532c6 266 SUPERFAMILY SSF51621 6 247 6.03E-54 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS33685 818523b074dddf5877822e67fde532c6 266 PIRSF PIRSF000388 1 251 5.0E-64 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 Pfam PF00005 ABC transporter 18 173 1.7E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 SUPERFAMILY SSF52540 2 234 3.77E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 242 2.8E-95 T 06-07-2017 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 Gene3D G3DSA:3.40.50.300 2 235 1.1E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 SMART SM00382 26 203 1.0E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26960 f94738ecdcb67e0580a93a9c64331fa5 279 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24125 1b94af4e9909584bc3f1aa521c8a3919 311 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 39 252 9.0E-49 T 06-07-2017 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 TIGRFAM TIGR00035 asp_race: aspartate racemase 3 233 4.0E-64 T 06-07-2017 IPR004380 Aspartate racemase GO:0006520|GO:0016855 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 SUPERFAMILY SSF53681 3 118 6.1E-32 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 Gene3D G3DSA:3.40.50.1860 115 217 6.2E-30 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 SUPERFAMILY SSF53681 121 229 2.62E-30 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 Pfam PF01177 Asp/Glu/Hydantoin racemase 9 225 4.6E-51 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16885 6d412b531e2ffce28e16b82b22329bc3 234 Gene3D G3DSA:3.40.50.1860 3 114 6.4E-37 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 SUPERFAMILY SSF46689 184 234 4.93E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 Gene3D G3DSA:1.10.10.60 237 286 3.3E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 Pfam PF02311 AraC-like ligand binding domain 37 164 3.9E-20 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 237 280 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 268 284 7.0E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 253 268 7.0E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 SMART SM00342 200 284 1.4E-29 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 SUPERFAMILY SSF51215 16 166 2.62E-17 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 Gene3D G3DSA:1.10.10.60 181 236 1.6E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 Gene3D G3DSA:2.60.120.280 50 162 1.4E-12 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 SUPERFAMILY SSF46689 237 287 1.18E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 Pfam PF12833 Helix-turn-helix domain 206 285 1.7E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS30545 ecc3b4ee14fb5381caedf5a9ca19a8f8 313 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 185 229 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 SUPERFAMILY SSF50129 1 167 8.78E-48 T 06-07-2017 IPR011032 GroES-like CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 Gene3D G3DSA:3.40.50.720 170 290 1.4E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 Gene3D G3DSA:3.90.180.10 1 169 4.8E-56 T 06-07-2017 IPR011032 GroES-like CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 SMART SM00829 7 343 1.2E-8 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 Pfam PF00107 Zinc-binding dehydrogenase 176 305 8.5E-29 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 132 5.6E-29 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS05685 b17b6e589660fabd511d2f7f12c15e10 346 SUPERFAMILY SSF51735 138 311 8.22E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 SUPERFAMILY SSF54368 3 101 1.57E-30 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 SMART SM01230 102 378 3.3E-137 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 95 1.5E-24 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 Gene3D G3DSA:3.10.20.70 4 105 9.9E-34 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 SUPERFAMILY SSF55931 103 467 4.9E-132 T 06-07-2017 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 Gene3D G3DSA:3.30.590.10 106 454 4.9E-131 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 385 397 - T 06-07-2017 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 467 2.2E-189 T 06-07-2017 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 Pfam PF00120 Glutamine synthetase, catalytic domain 103 465 1.5E-134 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS18120 76f5ff336eac480f7f2a63fc43942e6a 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 SUPERFAMILY SSF48008 105 238 1.6E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 Gene3D G3DSA:1.10.10.10 15 88 1.6E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 Pfam PF07729 FCD domain 107 229 1.7E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 SMART SM00895 104 231 3.2E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 Gene3D G3DSA:1.20.120.530 106 238 2.7E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 5.8E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 5.8E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 2.1E-25 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 SMART SM00345 23 82 1.5E-27 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31130 5a46e48b661e761e807207e07a00fcbc 243 SUPERFAMILY SSF46785 16 86 5.46E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 Pfam PF13533 Biotin-lipoyl like 58 97 1.6E-8 T 06-07-2017 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 15 436 9.1E-115 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 SUPERFAMILY SSF111369 56 114 6.93E-6 T 06-07-2017 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 Pfam PF13437 HlyD family secretion protein 289 390 3.3E-17 T 06-07-2017 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 333 357 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 25 48 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 300 321 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 357 380 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 415 435 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 67 87 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 400 415 1.5E-56 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 Gene3D G3DSA:2.40.50.100 58 89 2.7E-16 T 06-07-2017 CDO28_RS17135 52c2257d5d31fb336bb72d0ff614e438 436 Gene3D G3DSA:2.40.50.100 285 320 2.7E-16 T 06-07-2017 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 Pfam PF00902 Sec-independent protein translocase protein (TatC) 14 236 1.4E-67 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 12 241 1.7E-61 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 11 38 1.5E-42 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 112 138 1.5E-42 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 94 112 1.5E-42 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 169 197 1.5E-42 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 ProSitePatterns PS01218 TatC family signature. 169 188 - T 06-07-2017 IPR019820 Sec-independent periplasmic protein translocase, conserved site CDO28_RS02710 ec9fd8e51f146643a875f59ace867b32 280 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 6 255 18.807 T 06-07-2017 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 SMART SM00382 33 220 2.7E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 SMART SM00382 305 499 2.1 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 ProSitePatterns PS00211 ABC transporters family signature. 423 437 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 Pfam PF00005 ABC transporter 296 450 2.7E-12 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 Pfam PF00005 ABC transporter 24 172 4.2E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 Gene3D G3DSA:3.40.50.300 273 501 3.1E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 SUPERFAMILY SSF52540 275 500 1.4E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 SUPERFAMILY SSF52540 6 223 8.53E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19920 22b2da7348df710b371ec4b2d24da120 526 Gene3D G3DSA:3.40.50.300 6 223 1.5E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 SUPERFAMILY SSF55021 24 98 2.04E-19 T 06-07-2017 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 23 98 1.0E-36 T 06-07-2017 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 Pfam PF10369 Small subunit of acetolactate synthase 113 186 3.8E-25 T 06-07-2017 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 Gene3D G3DSA:3.30.70.1150 112 189 4.1E-29 T 06-07-2017 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 SUPERFAMILY SSF55021 108 188 1.56E-25 T 06-07-2017 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 Pfam PF01842 ACT domain 24 89 2.6E-13 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 Gene3D G3DSA:3.30.70.260 23 99 7.0E-34 T 06-07-2017 CDO28_RS16730 733eea7ee5c4a7eaacd2a877f6c8db66 190 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 23 187 3.3E-52 T 06-07-2017 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 319 9.5E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 303 9.5E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 Gene3D G3DSA:3.40.50.880 12 201 2.0E-30 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 Pfam PF01965 DJ-1/PfpI family 45 180 1.4E-9 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 Pfam PF12833 Helix-turn-helix domain 242 321 2.6E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 Gene3D G3DSA:1.10.10.60 215 272 4.2E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 Gene3D G3DSA:1.10.10.60 273 321 7.7E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 273 315 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 SUPERFAMILY SSF46689 219 267 8.96E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 SMART SM00342 236 319 3.0E-32 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 SUPERFAMILY SSF46689 272 321 8.06E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10170 41103f0b65903d6f3ceda2ef6464971f 324 SUPERFAMILY SSF52317 12 197 6.87E-36 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 Gene3D G3DSA:3.40.50.300 315 528 2.1E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 SUPERFAMILY SSF52540 9 236 1.44E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 Pfam PF12848 ABC transporter 224 296 1.7E-14 T 06-07-2017 IPR032781 ABC-transporter extension domain CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 SMART SM00382 342 512 8.6E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 SMART SM00382 31 239 4.0E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 Pfam PF00005 ABC transporter 22 185 7.9E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 Pfam PF00005 ABC transporter 334 467 1.3E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 SUPERFAMILY SSF52540 304 516 1.81E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 547 1.8E-284 T 06-07-2017 IPR022374 ABC transporter, ATP-binding protein, ChvD CDO28_RS16260 c916f66cb94d9682d010b72997e2850a 549 Gene3D G3DSA:3.40.50.300 9 282 3.5E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26525 5a9e95178392f70c9a1321f5e7f1b84d 427 Pfam PF00534 Glycosyl transferases group 1 226 385 1.4E-44 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS26525 5a9e95178392f70c9a1321f5e7f1b84d 427 SUPERFAMILY SSF53756 50 403 2.05E-75 T 06-07-2017 CDO28_RS26525 5a9e95178392f70c9a1321f5e7f1b84d 427 Gene3D G3DSA:3.40.50.2000 228 384 5.5E-32 T 06-07-2017 CDO28_RS26525 5a9e95178392f70c9a1321f5e7f1b84d 427 Pfam PF13579 Glycosyl transferase 4-like domain 61 209 5.2E-14 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS26525 5a9e95178392f70c9a1321f5e7f1b84d 427 Gene3D G3DSA:3.40.50.2000 52 170 2.2E-4 T 06-07-2017 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 Gene3D G3DSA:1.10.45.10 375 399 6.8E-4 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 SUPERFAMILY SSF55103 197 398 1.48E-19 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 Pfam PF01565 FAD binding domain 5 145 9.8E-23 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 Gene3D G3DSA:3.30.465.10 60 183 1.2E-17 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 SUPERFAMILY SSF56176 4 183 2.29E-36 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS06700 1cd984ba5b649cb715e8c67c9b10ba6f 405 Gene3D G3DSA:3.30.43.10 5 59 2.4E-4 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 Gene3D G3DSA:3.30.420.40 2 250 6.6E-67 T 06-07-2017 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 355 375 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 Gene3D G3DSA:3.30.420.40 255 493 7.6E-42 T 06-07-2017 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 SUPERFAMILY SSF53067 252 487 5.18E-51 T 06-07-2017 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 PIRSF PIRSF000538 3 497 8.8E-120 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 SUPERFAMILY SSF53067 5 253 1.24E-67 T 06-07-2017 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 250 5.1E-59 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS14360 602a2564a2c4720d3875db6f2b768c2c 509 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 443 1.5E-27 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS28870 134763cb7556111df114f1943a145b80 217 Gene3D G3DSA:3.40.50.850 20 190 7.2E-37 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS28870 134763cb7556111df114f1943a145b80 217 SUPERFAMILY SSF52499 18 193 3.01E-41 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS28870 134763cb7556111df114f1943a145b80 217 Pfam PF00857 Isochorismatase family 27 176 1.8E-22 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS12355 d3b223e081cecd4b065c491bb9a18947 399 Pfam PF13432 Tetratricopeptide repeat 264 316 4.2E-4 T 06-07-2017 CDO28_RS12355 d3b223e081cecd4b065c491bb9a18947 399 Pfam PF13432 Tetratricopeptide repeat 201 256 0.0076 T 06-07-2017 CDO28_RS12355 d3b223e081cecd4b065c491bb9a18947 399 SUPERFAMILY SSF48452 191 320 4.51E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12355 d3b223e081cecd4b065c491bb9a18947 399 Gene3D G3DSA:1.25.40.10 189 326 8.7E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 127 139 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 Gene3D G3DSA:3.30.420.40 1 242 2.7E-62 T 06-07-2017 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 SUPERFAMILY SSF53067 244 480 3.74E-58 T 06-07-2017 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 Gene3D G3DSA:3.30.420.40 246 481 2.1E-47 T 06-07-2017 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 251 436 1.4E-30 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 242 1.2E-69 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 PIRSF PIRSF000538 1 483 6.9E-131 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 SUPERFAMILY SSF53067 2 244 8.05E-71 T 06-07-2017 CDO28_RS12630 c9f3e1e9e32591737d1b746462933c3d 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 476 4.2E-178 T 06-07-2017 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 CDO28_RS22150 44f4fbc35c0c7db04e2ae0501874b375 295 SUPERFAMILY SSF54211 4 152 4.86E-17 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS22150 44f4fbc35c0c7db04e2ae0501874b375 295 Gene3D G3DSA:3.30.230.10 55 131 6.4E-13 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS22150 44f4fbc35c0c7db04e2ae0501874b375 295 Pfam PF00288 GHMP kinases N terminal domain 82 131 1.6E-10 T 06-07-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 CDO28_RS22150 44f4fbc35c0c7db04e2ae0501874b375 295 PIRSF PIRSF033887 1 290 3.0E-65 T 06-07-2017 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00040+2.7.1.17|KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SUPERFAMILY SSF50494 40 75 8.36E-61 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SUPERFAMILY SSF50494 134 320 8.36E-61 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SUPERFAMILY SSF50156 430 492 1.97E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Gene3D G3DSA:2.40.10.10 52 198 3.9E-33 T 06-07-2017 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Gene3D G3DSA:2.30.42.10 313 407 1.1E-28 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SUPERFAMILY SSF50156 293 400 1.01E-23 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SMART SM00228 310 392 5.9E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 SMART SM00228 431 505 6.5E-7 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Pfam PF13180 PDZ domain 431 492 7.6E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Pfam PF13180 PDZ domain 310 400 9.8E-17 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 146 158 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 350 362 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 208 232 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 167 187 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 264 281 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 PRINTS PR00834 HtrA/DegQ protease family signature 242 259 3.8E-57 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Gene3D G3DSA:2.40.10.10 200 312 1.2E-43 T 06-07-2017 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Pfam PF13365 Trypsin-like peptidase domain 137 271 7.8E-32 T 06-07-2017 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 52 510 1.0E-139 T 06-07-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CDO28_RS05415 8556f950a01b44beedbb198396475c92 517 Gene3D G3DSA:2.30.42.10 428 491 2.8E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Gene3D G3DSA:3.30.300.30 413 508 6.7E-29 T 06-07-2017 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 SUPERFAMILY SSF56801 4 510 1.24E-154 T 06-07-2017 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Pfam PF00501 AMP-binding enzyme 9 419 5.6E-104 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Gene3D G3DSA:3.40.50.980 5 172 6.4E-40 T 06-07-2017 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Gene3D G3DSA:3.40.50.980 173 330 9.9E-40 T 06-07-2017 CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 501 1.1E-20 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS29540 287be97ad2e0892057d818686dc360ee 515 Gene3D G3DSA:2.30.38.10 331 412 3.1E-25 T 06-07-2017 CDO28_RS07630 3267c27d480f202c9ad5f6b9482befa5 415 SMART SM00044 192 391 3.6E-11 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS07630 3267c27d480f202c9ad5f6b9482befa5 415 SUPERFAMILY SSF55073 224 410 2.04E-48 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS07630 3267c27d480f202c9ad5f6b9482befa5 415 Gene3D G3DSA:3.30.70.1230 225 412 2.9E-36 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS07630 3267c27d480f202c9ad5f6b9482befa5 415 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 225 367 9.3E-25 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 145 182 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 TIGRFAM TIGR01882 peptidase-T: peptidase T 10 410 1.8E-96 T 06-07-2017 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 Gene3D G3DSA:3.30.70.360 216 325 2.2E-34 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 Pfam PF07687 Peptidase dimerisation domain 213 311 7.3E-6 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 PIRSF PIRSF037215 7 413 6.3E-141 T 06-07-2017 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 SUPERFAMILY SSF55031 215 325 2.3E-31 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 80 89 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 Gene3D G3DSA:3.40.630.10 328 411 1.7E-94 T 06-07-2017 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 Gene3D G3DSA:3.40.630.10 9 215 1.7E-94 T 06-07-2017 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 Pfam PF01546 Peptidase family M20/M25/M40 146 406 2.9E-13 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 SUPERFAMILY SSF53187 10 216 1.81E-71 T 06-07-2017 CDO28_RS23400 91b0a6da5309ef1d17e97af12876cf0c 413 SUPERFAMILY SSF53187 328 408 1.81E-71 T 06-07-2017 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SUPERFAMILY SSF57783 606 642 3.4E-8 T 06-07-2017 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF01131 DNA topoisomerase 130 561 1.6E-121 T 06-07-2017 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:1.10.460.10 464 576 2.4E-58 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:1.10.460.10 136 187 2.4E-58 T 06-07-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SUPERFAMILY SSF56712 1 575 8.76E-184 T 06-07-2017 IPR023405 DNA topoisomerase, type IA, core domain CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SUPERFAMILY SSF56712 606 614 8.76E-184 T 06-07-2017 IPR023405 DNA topoisomerase, type IA, core domain CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SMART SM00493 1 101 7.7E-25 T 06-07-2017 IPR006171 Toprim domain CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 641 2.6E-231 T 06-07-2017 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 607 642 2.9E-13 T 06-07-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SMART SM00437 248 524 2.9E-98 T 06-07-2017 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:3.40.50.140 1 135 5.9E-42 T 06-07-2017 IPR006171 Toprim domain CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF13368 Topoisomerase C-terminal repeat 790 841 1.4E-19 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF13368 Topoisomerase C-terminal repeat 721 774 8.8E-17 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF13368 Topoisomerase C-terminal repeat 663 717 2.8E-16 T 06-07-2017 IPR025589 Topoisomerase C-terminal repeat CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:3.30.65.10 608 642 3.6E-9 T 06-07-2017 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 SMART SM00436 106 194 3.5E-45 T 06-07-2017 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 733 52.645 T 06-07-2017 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Pfam PF01751 Toprim domain 3 115 8.0E-23 T 06-07-2017 IPR006171 Toprim domain CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:2.70.20.10 188 320 7.5E-33 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 Gene3D G3DSA:2.70.20.10 324 463 2.9E-35 T 06-07-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 164 182 1.2E-33 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 298 307 1.2E-33 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 487 501 1.2E-33 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 1.2E-33 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 376 392 1.2E-33 T 06-07-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 CDO28_RS03950 6686d42947669bea594bb33c14b5e574 894 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 285 307 - T 06-07-2017 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 SUPERFAMILY SSF54980 305 384 1.26E-18 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 54 69 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Gene3D G3DSA:3.30.70.240 415 503 1.8E-19 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 SUPERFAMILY SSF54980 413 507 2.11E-23 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Pfam PF00679 Elongation factor G C-terminus 413 498 4.2E-19 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Hamap MF_00071 Elongation factor 4 [lepA]. 1 611 304.78 T 06-07-2017 IPR006297 Elongation factor 4 GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 TIGRFAM TIGR01393 lepA: elongation factor 4 15 608 5.0E-294 T 06-07-2017 IPR006297 Elongation factor 4 GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Pfam PF06421 GTP-binding protein LepA C-terminus 501 607 1.4E-50 T 06-07-2017 IPR013842 GTP-binding protein LepA, C-terminal CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Pfam PF00009 Elongation factor Tu GTP binding domain 15 193 3.6E-52 T 06-07-2017 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Gene3D G3DSA:3.30.70.870 306 383 2.0E-26 T 06-07-2017 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Pfam PF03144 Elongation factor Tu domain 2 219 289 5.8E-12 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 PRINTS PR00315 GTP-binding elongation factor signature 86 96 5.3E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 PRINTS PR00315 GTP-binding elongation factor signature 18 31 5.3E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 PRINTS PR00315 GTP-binding elongation factor signature 61 69 5.3E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 PRINTS PR00315 GTP-binding elongation factor signature 138 147 5.3E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 PRINTS PR00315 GTP-binding elongation factor signature 102 113 5.3E-14 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Gene3D G3DSA:2.40.30.10 208 303 1.4E-25 T 06-07-2017 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 Gene3D G3DSA:3.40.50.300 13 207 2.7E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 183 9.7E-19 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS09210 a155fa379af37b9cedbab46af87be39f 611 SUPERFAMILY SSF52540 10 245 1.72E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 227 278 1.3E-6 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 SUPERFAMILY SSF55447 224 314 1.31E-18 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 SUPERFAMILY SSF56176 1 220 2.07E-58 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 SMART SM01092 226 314 4.9E-18 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Gene3D G3DSA:3.30.43.10 1 51 2.1E-20 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Gene3D G3DSA:3.30.465.10 157 220 3.1E-32 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Gene3D G3DSA:3.30.465.10 56 113 3.1E-32 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Gene3D G3DSA:3.30.390.50 224 314 2.4E-20 T 06-07-2017 CDO28_RS20550 ea1b5be1fc2ac04901aa41ecff1fe342 316 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 221 1.4E-52 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 7 185 42.51 T 06-07-2017 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 Gene3D G3DSA:3.30.1440.10 8 184 4.6E-79 T 06-07-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 Pfam PF00281 Ribosomal protein L5 30 86 4.0E-26 T 06-07-2017 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 SUPERFAMILY SSF55282 9 184 6.83E-77 T 06-07-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 ProSitePatterns PS00358 Ribosomal protein L5 signature. 63 79 - T 06-07-2017 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 Pfam PF00673 ribosomal L5P family C-terminus 90 183 4.1E-42 T 06-07-2017 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03570 15cc39dfa3b9d7704a5174d38ba52464 185 PIRSF PIRSF002161 3 185 4.0E-66 T 06-07-2017 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Gene3D G3DSA:3.40.190.10 113 201 2.8E-33 T 06-07-2017 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Gene3D G3DSA:3.30.160.40 223 301 1.2E-19 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PRINTS PR00151 Porphobilinogen deaminase signature 232 249 2.0E-38 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PRINTS PR00151 Porphobilinogen deaminase signature 126 143 2.0E-38 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PRINTS PR00151 Porphobilinogen deaminase signature 47 67 2.0E-38 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PRINTS PR00151 Porphobilinogen deaminase signature 78 97 2.0E-38 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PRINTS PR00151 Porphobilinogen deaminase signature 145 162 2.0E-38 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 299 36.471 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Gene3D G3DSA:3.40.190.10 3 112 1.6E-43 T 06-07-2017 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 SUPERFAMILY SSF53850 5 221 9.23E-75 T 06-07-2017 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 PIRSF PIRSF001438 1 309 3.6E-110 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 SUPERFAMILY SSF54782 222 307 1.1E-21 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 233 249 - T 06-07-2017 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 214 4.4E-71 T 06-07-2017 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 229 297 9.1E-16 T 06-07-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS11670 5bb937b094795c1515cc1158d58400fa 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 298 1.0E-103 T 06-07-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS26320 ca4257a615674458d8637a0d8e8df153 352 SUPERFAMILY SSF51419 12 232 3.93E-41 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS26320 ca4257a615674458d8637a0d8e8df153 352 SMART SM01119 244 335 6.1E-37 T 06-07-2017 IPR026956 D-serine dehydratase-like domain CDO28_RS26320 ca4257a615674458d8637a0d8e8df153 352 Gene3D G3DSA:3.20.20.10 26 231 2.2E-22 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS26320 ca4257a615674458d8637a0d8e8df153 352 Pfam PF14031 Putative serine dehydratase domain 244 334 9.3E-22 T 06-07-2017 IPR026956 D-serine dehydratase-like domain CDO28_RS26320 ca4257a615674458d8637a0d8e8df153 352 Pfam PF01168 Alanine racemase, N-terminal domain 12 230 4.3E-28 T 06-07-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Pfam PF00009 Elongation factor Tu GTP binding domain 12 269 1.3E-50 T 06-07-2017 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Gene3D G3DSA:3.30.70.870 387 456 7.0E-11 T 06-07-2017 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Pfam PF16658 Class II release factor RF3, C-terminal domain 379 505 2.9E-40 T 06-07-2017 IPR032090 Peptide chain release factor 3, C-terminal CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 153 1.5E-22 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 SUPERFAMILY SSF50447 254 385 6.6E-27 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Gene3D G3DSA:2.40.30.10 285 386 4.3E-22 T 06-07-2017 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 PRINTS PR00315 GTP-binding elongation factor signature 100 111 1.5E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 PRINTS PR00315 GTP-binding elongation factor signature 136 145 1.5E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 PRINTS PR00315 GTP-binding elongation factor signature 64 72 1.5E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 PRINTS PR00315 GTP-binding elongation factor signature 84 94 1.5E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-12 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Gene3D G3DSA:3.40.50.300 8 272 4.9E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 SUPERFAMILY SSF52540 9 269 9.88E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 520 1.5E-198 T 06-07-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 SUPERFAMILY SSF54980 385 456 5.4E-13 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Pfam PF03144 Elongation factor Tu domain 2 306 372 1.3E-9 T 06-07-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 3 519 48.561 T 06-07-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 CDO28_RS08830 d796d68df2a4a8d695cafcb1e0641fd9 527 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 Pfam PF02311 AraC-like ligand binding domain 36 171 1.2E-19 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 SUPERFAMILY SSF46689 187 237 1.66E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 Gene3D G3DSA:1.10.10.60 184 242 9.1E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 283 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 Gene3D G3DSA:2.60.120.280 30 178 4.6E-18 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 SUPERFAMILY SSF46689 240 289 3.49E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 Pfam PF12833 Helix-turn-helix domain 210 289 2.0E-21 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 Gene3D G3DSA:1.10.10.60 243 289 7.2E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 SUPERFAMILY SSF51215 7 177 7.19E-21 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS28940 27ad5ca9416c763b4ea1b0ba00b3f8fb 295 SMART SM00342 204 287 2.2E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 70 99 - T 06-07-2017 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 Gene3D G3DSA:3.30.70.240 126 192 7.3E-10 T 06-07-2017 IPR000640 Translation elongation factor EFG, V domain CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 Pfam PF09186 Domain of unknown function (DUF1949) 131 187 1.2E-9 T 06-07-2017 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 Gene3D G3DSA:3.30.230.30 3 122 1.2E-42 T 06-07-2017 IPR001498 Impact, N-terminal CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 SUPERFAMILY SSF54211 2 122 1.02E-36 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 Pfam PF01205 Uncharacterized protein family UPF0029 15 115 9.2E-25 T 06-07-2017 IPR001498 Impact, N-terminal CDO28_RS08190 a8603e03d71ced668b666d68aca7b2e4 194 SUPERFAMILY SSF54980 126 192 3.17E-9 T 06-07-2017 IPR009022 Elongation factor G, III-V domain CDO28_RS12200 556c607b2980c4bb0ec16a22cefdff9e 401 SUPERFAMILY SSF53822 28 399 1.11E-91 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS12200 556c607b2980c4bb0ec16a22cefdff9e 401 Pfam PF13458 Periplasmic binding protein 28 364 2.9E-86 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS12200 556c607b2980c4bb0ec16a22cefdff9e 401 Gene3D G3DSA:3.40.50.2300 159 302 1.1E-17 T 06-07-2017 CDO28_RS12200 556c607b2980c4bb0ec16a22cefdff9e 401 Gene3D G3DSA:3.40.50.2300 303 353 1.8E-31 T 06-07-2017 CDO28_RS12200 556c607b2980c4bb0ec16a22cefdff9e 401 Gene3D G3DSA:3.40.50.2300 24 151 1.8E-31 T 06-07-2017 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 SUPERFAMILY SSF53901 8 323 1.42E-74 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 235 323 2.3E-37 T 06-07-2017 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 323 8.5E-120 T 06-07-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 Gene3D G3DSA:3.40.47.10 162 323 6.4E-57 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 Gene3D G3DSA:3.40.47.10 2 161 1.2E-66 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 190 3.0E-32 T 06-07-2017 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDO28_RS04375 113954babffe24b666cbc3e87cdf4fc2 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 323 71.114 T 06-07-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 PIRSF PIRSF005499 1 717 2.7E-300 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SMART SM00322 554 619 3.5E-12 T 06-07-2017 IPR004087 K Homology domain GO:0003676 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 8.5E-13 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF50249 622 705 3.36E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF54791 557 642 4.93E-23 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Gene3D G3DSA:3.30.1370.10 554 620 1.4E-26 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF54211 294 490 3.34E-49 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 322 3.4E-24 T 06-07-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF54211 2 144 1.11E-52 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 695 30.733 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SMART SM00316 622 692 7.4E-21 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 693 0.0 T 06-07-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF55666 145 235 1.39E-28 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF00013 KH domain 558 615 7.5E-11 T 06-07-2017 IPR004088 K Homology domain, type 1 GO:0003723 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Gene3D G3DSA:2.40.50.140 621 696 3.4E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Gene3D G3DSA:3.30.230.70 4 223 5.0E-88 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Gene3D G3DSA:3.30.230.70 315 545 1.7E-88 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 SUPERFAMILY SSF55666 452 547 4.21E-27 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Gene3D G3DSA:1.10.10.400 239 314 1.5E-24 T 06-07-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF01138 3' exoribonuclease family, domain 1 13 144 2.4E-23 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 9.4E-23 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS09365 593985c5c5650d1d3c35bcf07c1b9422 717 Pfam PF00575 S1 RNA binding domain 620 692 2.7E-16 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 2.1E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 411 2.1E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 368 2.1E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 392 2.1E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SUPERFAMILY SSF55874 289 414 2.62E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SUPERFAMILY SSF158472 156 207 1.7E-5 T 06-07-2017 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SMART SM00387 305 414 2.5E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SMART SM00304 156 208 4.4E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SUPERFAMILY SSF47384 193 268 1.67E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 Pfam PF00672 HAMP domain 138 204 3.8E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 SMART SM00388 209 270 1.4E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 Pfam PF00512 His Kinase A (phospho-acceptor) domain 210 269 2.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 306 412 2.4E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 Gene3D G3DSA:3.30.565.10 256 414 7.5E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27735 b95eb896971900e4f04a2c6a9c6287d7 420 Gene3D G3DSA:1.10.287.130 200 255 2.9E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 241 259 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 199 216 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 158 178 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 95 116 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 20 37 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 135 157 2.8E-27 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 19 259 8.7E-60 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 Gene3D G3DSA:2.120.10.30 14 293 1.8E-69 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS06475 10ddb4c8f73264e2ac891b0eee931acc 294 SUPERFAMILY SSF63829 17 292 3.27E-54 T 06-07-2017 CDO28_RS09445 97cc9bb74a22a152e457093db200a147 134 Gene3D G3DSA:3.30.428.10 10 134 3.3E-31 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 CDO28_RS09445 97cc9bb74a22a152e457093db200a147 134 PIRSF PIRSF000714 3 134 5.9E-46 T 06-07-2017 IPR026026 Histidine triad hydrolase, Hint-type CDO28_RS09445 97cc9bb74a22a152e457093db200a147 134 SUPERFAMILY SSF54197 7 134 1.87E-33 T 06-07-2017 IPR011146 HIT-like domain GO:0003824 CDO28_RS09445 97cc9bb74a22a152e457093db200a147 134 Pfam PF01230 HIT domain 17 100 4.0E-15 T 06-07-2017 IPR001310 Histidine triad (HIT) protein CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 Gene3D G3DSA:3.40.50.1820 3 177 6.3E-85 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 Gene3D G3DSA:3.40.50.1820 213 321 6.3E-85 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 Pfam PF00561 alpha/beta hydrolase fold 22 305 3.1E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 9.5E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 9.5E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 9.5E-6 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 SUPERFAMILY SSF53474 2 177 1.08E-71 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 SUPERFAMILY SSF53474 213 319 1.08E-71 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 48 63 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 297 319 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 259 275 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 108 121 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 28 46 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19390 06c38a7e19899605e50252de797d949e 326 PRINTS PR00412 Epoxide hydrolase signature 94 107 3.3E-33 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 Gene3D G3DSA:3.90.190.20 298 442 1.3E-21 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 TIGRFAM TIGR01499 folC: bifunctional protein FolC 28 439 3.8E-102 T 06-07-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 PIRSF PIRSF001563 2 444 2.9E-101 T 06-07-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 146 161 - T 06-07-2017 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 Pfam PF08245 Mur ligase middle domain 51 273 9.7E-11 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 SUPERFAMILY SSF53244 305 443 4.35E-20 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 SUPERFAMILY SSF53623 11 295 8.36E-86 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS10485 9666cc99644baa2bd07bb9d8cf302f09 447 Gene3D G3DSA:3.40.1190.10 9 296 6.0E-96 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 Gene3D G3DSA:1.20.1650.10 13 98 4.2E-6 T 06-07-2017 CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 Gene3D G3DSA:3.40.640.10 110 374 1.1E-86 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 SUPERFAMILY SSF53383 31 488 7.69E-108 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 100 421 2.3E-55 T 06-07-2017 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 305 326 - T 06-07-2017 IPR021115 Pyridoxal-phosphate binding site GO:0016831 CDO28_RS20480 6ae4d208e0ae062ca9b3725dc068e0e6 495 Gene3D G3DSA:3.90.1150.10 375 488 9.5E-34 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:2.70.150.10 245 412 1.5E-34 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 684 700 7.8E-9 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 712 728 7.8E-9 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 743 768 7.8E-9 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 226 822 6.4E-181 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 18 77 1.1E-11 T 06-07-2017 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 85 147 7.1E-11 T 06-07-2017 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF55008 17 81 1.96E-19 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF81653 313 411 1.83E-30 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF81665 412 507 3.4E-12 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF81665 761 789 3.4E-12 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF81665 260 315 3.4E-12 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Pfam PF00403 Heavy-metal-associated domain 21 77 2.9E-16 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Pfam PF00403 Heavy-metal-associated domain 86 146 1.5E-16 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:3.30.70.100 17 81 4.3E-24 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF55008 81 148 7.33E-21 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 ProSitePatterns PS01047 Heavy-metal-associated domain. 21 50 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 ProSitePatterns PS01047 Heavy-metal-associated domain. 88 117 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:3.40.1110.10 528 639 2.7E-22 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Pfam PF00122 E1-E2 ATPase 282 504 1.5E-67 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Pfam PF00702 haloacid dehalogenase-like hydrolase 510 726 2.2E-46 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 515 521 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:3.40.50.1000 484 527 5.7E-61 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:3.40.50.1000 640 780 5.7E-61 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 513 527 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 637 648 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 669 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 735 747 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 361 375 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 712 731 3.0E-28 T 06-07-2017 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 244 821 1.8E-189 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF56784 511 531 8.25E-63 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 SUPERFAMILY SSF56784 570 819 8.25E-63 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 283 790 5.7E-93 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS27835 626f8f929fb3ea31abd1ca7f71081493 827 Gene3D G3DSA:3.30.70.100 82 147 4.8E-24 T 06-07-2017 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 Gene3D G3DSA:3.40.605.10 13 267 2.9E-94 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 Gene3D G3DSA:3.40.309.10 268 453 8.4E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 Pfam PF00171 Aldehyde dehydrogenase family 19 478 2.4E-168 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 SUPERFAMILY SSF53720 7 481 8.77E-166 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS10565 2f000139cc7b5b3505cd544129ef8486 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 4.5E-219 T 06-07-2017 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 CDO28_RS04645 37a25b0c41ae272fa75d05840f5cb7c4 86 Pfam PF02597 ThiS family 7 86 1.3E-15 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 CDO28_RS04645 37a25b0c41ae272fa75d05840f5cb7c4 86 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 4 86 2.1E-21 T 06-07-2017 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 CDO28_RS04645 37a25b0c41ae272fa75d05840f5cb7c4 86 Gene3D G3DSA:3.10.20.30 3 86 1.3E-19 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS04645 37a25b0c41ae272fa75d05840f5cb7c4 86 SUPERFAMILY SSF54285 3 84 8.01E-18 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDO28_RS24870 cd42db0e761d71b10e22557621af9d08 263 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 4 231 6.1E-66 T 06-07-2017 IPR017592 Pilus assembly, Flp-type CpaB CDO28_RS24870 cd42db0e761d71b10e22557621af9d08 263 Pfam PF08666 SAF domain 42 107 9.5E-6 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS24870 cd42db0e761d71b10e22557621af9d08 263 SMART SM00858 41 108 3.9E-8 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS24870 cd42db0e761d71b10e22557621af9d08 263 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 114 222 2.0E-29 T 06-07-2017 IPR031571 Flp pilus assembly protein RcpC/CpaB domain CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 SUPERFAMILY SSF52540 1133 1250 6.73E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 SUPERFAMILY SSF52540 619 676 6.73E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 SMART SM00490 1125 1216 0.0056 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 Gene3D G3DSA:3.40.50.300 1097 1239 7.8E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 Pfam PF00271 Helicase conserved C-terminal domain 1135 1215 8.7E-7 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 SUPERFAMILY SSF52540 619 688 5.49E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 SUPERFAMILY SSF52540 845 967 5.49E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 Gene3D G3DSA:3.40.50.300 620 714 2.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02455 7eb86a01c4184325df2c9d415d226d71 1443 Gene3D G3DSA:3.40.50.300 856 958 2.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 65 81 3.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 65 3.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 88 3.5E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 Gene3D G3DSA:1.10.10.10 30 104 2.1E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 Gene3D G3DSA:1.20.120.530 115 255 1.1E-14 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 SMART SM00345 32 93 3.4E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 SUPERFAMILY SSF46785 25 97 1.05E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 SMART SM00895 118 247 7.1E-14 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 SUPERFAMILY SSF48008 115 254 2.38E-15 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32895 034f14798009c4315fdd1c71c349aaf4 260 Pfam PF07729 FCD domain 118 246 3.9E-14 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS25825 d08740799ba7580dc065ed247b16b61d 104 Gene3D G3DSA:3.30.70.900 2 100 1.8E-38 T 06-07-2017 CDO28_RS25825 d08740799ba7580dc065ed247b16b61d 104 SUPERFAMILY SSF54909 1 102 1.93E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS25825 d08740799ba7580dc065ed247b16b61d 104 Pfam PF07110 EthD domain 18 91 3.2E-6 T 06-07-2017 IPR009799 EthD domain CDO28_RS25825 d08740799ba7580dc065ed247b16b61d 104 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 102 9.3E-34 T 06-07-2017 IPR009799 EthD domain CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 SUPERFAMILY SSF53850 85 279 4.81E-22 T 06-07-2017 CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 Pfam PF03466 LysR substrate binding domain 89 280 4.6E-22 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 9.3E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 Gene3D G3DSA:3.40.190.10 89 188 1.8E-19 T 06-07-2017 CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 Gene3D G3DSA:1.10.10.10 5 87 6.6E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 SUPERFAMILY SSF46785 4 112 3.16E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17515 376ddbf9536becb3e09f00eaa021c6f5 282 Gene3D G3DSA:3.40.190.10 189 229 6.7E-4 T 06-07-2017 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 SMART SM00883 2 94 2.8E-61 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 3.6E-36 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 Gene3D G3DSA:2.30.33.40 2 95 1.6E-39 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.781 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 PRINTS PR00297 10kDa chaperonin signature 60 72 8.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 PRINTS PR00297 10kDa chaperonin signature 81 94 8.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 PRINTS PR00297 10kDa chaperonin signature 25 46 8.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 PRINTS PR00297 10kDa chaperonin signature 3 18 8.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS27770 a1a59f9a04a6c2627d9a49667d9c0cf2 104 SUPERFAMILY SSF50129 1 95 3.2E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS09665 99f251592736d32108cda56867c1a963 374 Gene3D G3DSA:3.40.50.300 7 175 3.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09665 99f251592736d32108cda56867c1a963 374 Gene3D G3DSA:3.40.50.300 243 361 3.8E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09665 99f251592736d32108cda56867c1a963 374 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 6 356 5.3E-55 T 06-07-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CDO28_RS09665 99f251592736d32108cda56867c1a963 374 SUPERFAMILY SSF52540 6 372 2.5E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09665 99f251592736d32108cda56867c1a963 374 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 356 4.4E-17 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal CDO28_RS09665 99f251592736d32108cda56867c1a963 374 ProSitePatterns PS00617 RecF protein signature 1. 125 145 - T 06-07-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CDO28_RS09665 99f251592736d32108cda56867c1a963 374 ProSitePatterns PS00618 RecF protein signature 2. 316 334 - T 06-07-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CDO28_RS09665 99f251592736d32108cda56867c1a963 374 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 374 90.834 T 06-07-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CDO28_RS09665 99f251592736d32108cda56867c1a963 374 SMART SM00382 26 368 7.2E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 Gene3D G3DSA:3.40.47.10 271 419 8.3E-58 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 416 2.6E-185 T 06-07-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 161 177 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 SUPERFAMILY SSF53901 222 418 1.03E-69 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 SUPERFAMILY SSF53901 1 259 4.33E-76 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 254 1.1E-59 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 SMART SM00825 Beta-ketoacyl synthase 4 420 6.7E-15 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 PIRSF PIRSF000447 1 420 1.3E-197 T 06-07-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 375 8.8E-34 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS04785 8111e25b88f50ce191808bdd9384b1d6 421 Gene3D G3DSA:3.40.47.10 1 267 2.7E-77 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11095 3b3d10eca5b12a4df5c1179a3fe38d71 273 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 44 122 1.5E-14 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS11095 3b3d10eca5b12a4df5c1179a3fe38d71 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 69 268 8.4E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11095 3b3d10eca5b12a4df5c1179a3fe38d71 273 Gene3D G3DSA:1.10.3720.10 45 269 5.2E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11095 3b3d10eca5b12a4df5c1179a3fe38d71 273 SUPERFAMILY SSF161098 46 269 8.11E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Gene3D G3DSA:1.10.8.210 162 219 2.1E-9 T 06-07-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 230 244 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 7 215 2.7E-67 T 06-07-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 SUPERFAMILY SSF51735 5 123 2.17E-14 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Pfam PF14824 Sirohaem biosynthesis protein central 135 156 3.4E-7 T 06-07-2017 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Gene3D G3DSA:3.30.160.110 124 159 5.3E-17 T 06-07-2017 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 226 334 3.6E-22 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 SUPERFAMILY SSF53790 223 341 2.88E-29 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Pfam PF13241 Putative NAD(P)-binding 9 126 1.2E-15 T 06-07-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 SUPERFAMILY SSF75615 126 205 1.24E-22 T 06-07-2017 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Pfam PF10414 Sirohaem synthase dimerisation region 162 216 1.5E-11 T 06-07-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Gene3D G3DSA:3.40.1010.10 225 332 7.8E-29 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS28310 241ffb1d5be7f09c09ebc0e90d770a9a 360 Gene3D G3DSA:3.40.50.720 6 122 2.6E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 136 2.9E-29 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 Gene3D G3DSA:1.20.1330.10 302 349 2.4E-15 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 Gene3D G3DSA:1.20.1330.10 191 210 2.4E-15 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 Gene3D G3DSA:1.20.1330.10 53 136 2.4E-15 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 PRINTS PR00207 Flagellin signature 75 94 7.1E-7 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 PRINTS PR00207 Flagellin signature 107 130 7.1E-7 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 PRINTS PR00207 Flagellin signature 36 53 7.1E-7 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 SUPERFAMILY SSF64518 1 400 1.83E-65 T 06-07-2017 CDO28_RS07280 e80dd39cb09fce00e4782fd234b75c65 401 Pfam PF00700 Bacterial flagellin C-terminal helical region 316 399 1.9E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 253 4.8E-71 T 06-07-2017 CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 6.8E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 6.8E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 6.8E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 SUPERFAMILY SSF51735 5 254 7.11E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23665 7cd2a5a541841ce50994337f1160dde8 255 Gene3D G3DSA:3.40.50.720 5 254 3.8E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 SUPERFAMILY SSF51366 6 228 5.01E-67 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 60 73 - T 06-07-2017 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 Gene3D G3DSA:3.20.20.70 5 228 1.6E-73 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 8 224 2.6E-48 T 06-07-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 224 5.5E-67 T 06-07-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 SMART SM00934 8 224 3.0E-78 T 06-07-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS08900 17d0613dc74cc002fc044906fa4540cd 234 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 6 229 35.427 T 06-07-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 12 158 2.0E-38 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 119 132 1.5E-12 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 104 118 1.5E-12 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 87 100 1.5E-12 T 06-07-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 114 131 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 Pfam PF00364 Biotin-requiring enzyme 84 157 4.8E-20 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 SUPERFAMILY SSF51230 84 158 1.07E-22 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS03850 2d73888e79f4d946e4e0d2cdb35627ff 158 Gene3D G3DSA:2.40.50.100 82 158 3.9E-28 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00501 AMP-binding enzyme 1554 1952 9.1E-70 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00501 AMP-binding enzyme 488 878 1.9E-92 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF47336 2061 2133 2.62E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:1.10.1200.10 2071 2136 1.9E-20 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:1.10.1200.10 1001 1061 2.1E-18 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.40.50.980 1545 1700 1.5E-35 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.40.50.980 481 628 5.5E-40 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:2.30.38.10 790 868 1.9E-25 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:2.30.38.10 1864 1942 1.3E-18 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.40.50.980 1701 1863 2.7E-31 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.40.50.980 629 789 1.0E-44 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1573 1976 8.9E-96 T 06-07-2017 IPR010071 Amino acid adenylation domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 507 899 5.9E-126 T 06-07-2017 IPR010071 Amino acid adenylation domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF52777 1091 1292 4.34E-23 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF52777 1282 1518 1.67E-31 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SMART SM00823 Phosphopantetheine attachment site 997 1063 0.0024 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SMART SM00823 Phosphopantetheine attachment site 2067 2136 0.012 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF52777 202 452 7.04E-44 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF56801 443 1009 5.89E-142 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF52777 17 215 1.67E-32 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF56801 1543 2079 3.4E-122 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00550 Phosphopantetheine attachment site 999 1060 1.3E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00550 Phosphopantetheine attachment site 2069 2131 1.3E-8 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 SUPERFAMILY SSF47336 994 1059 1.7E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.30.300.30 873 1000 2.4E-26 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Gene3D G3DSA:3.30.300.30 1948 2070 4.5E-27 T 06-07-2017 CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00668 Condensation domain 1096 1390 1.3E-24 T 06-07-2017 IPR001242 Condensation domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF00668 Condensation domain 21 313 7.2E-52 T 06-07-2017 IPR001242 Condensation domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 ProSitePatterns PS00455 Putative AMP-binding domain signature. 622 633 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF13193 AMP-binding enzyme C-terminal domain 1960 2040 2.4E-7 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF13193 AMP-binding enzyme C-terminal domain 886 963 3.8E-6 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS34385 3fa107f42708a047e260e8ac98064c34 2146 Pfam PF13745 HxxPF-repeated domain 338 429 4.1E-12 T 06-07-2017 CDO28_RS10855 7c9a848072ec12c53bae04f94484d611 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 284 8.1E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10855 7c9a848072ec12c53bae04f94484d611 292 Gene3D G3DSA:1.10.3720.10 60 284 4.5E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10855 7c9a848072ec12c53bae04f94484d611 292 SUPERFAMILY SSF161098 53 279 2.18E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33765 8248fd98b689f6990463bee73320c069 432 Pfam PF05159 Capsule polysaccharide biosynthesis protein 87 335 4.5E-32 T 06-07-2017 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 SUPERFAMILY SSF52016 604 862 7.06E-63 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 12 862 2.6E-302 T 06-07-2017 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Gene3D G3DSA:3.40.1060.10 237 354 1.6E-29 T 06-07-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Gene3D G3DSA:3.30.499.10 12 236 7.7E-61 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Gene3D G3DSA:3.30.499.10 356 548 4.4E-52 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Pfam PF00694 Aconitase C-terminal domain 665 788 9.4E-33 T 06-07-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Pfam PF00330 Aconitase family (aconitate hydratase) 65 536 3.4E-150 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 ProSitePatterns PS01244 Aconitase family signature 2. 467 480 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 Gene3D G3DSA:3.20.19.10 610 862 2.0E-57 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 SUPERFAMILY SSF53732 5 589 5.49E-180 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 ProSitePatterns PS00450 Aconitase family signature 1. 401 417 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 133 146 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 157 165 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 405 416 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 280 293 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 266 279 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 190 203 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 359 373 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 204 219 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS19500 95af44989dab4631a772f772ddd117bd 868 PRINTS PR00415 Aconitase family signature 467 480 3.0E-34 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS24475 1e569e6a555ea7ff0a18901474f0346b 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 308 1.7E-34 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 Gene3D G3DSA:3.40.50.620 43 220 4.2E-43 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 55 248 3.4E-86 T 06-07-2017 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 SUPERFAMILY SSF52402 24 212 1.53E-37 T 06-07-2017 CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 12 250 35.634 T 06-07-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 PIRSF PIRSF000857 2 255 7.6E-71 T 06-07-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CDO28_RS05830 e3ebc9443c41c97a51af29ce9e331f1d 265 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 50 224 1.5E-33 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CDO28_RS16795 8802b58dd847dbfbaaba95ec0cba50f3 119 Gene3D G3DSA:1.10.10.10 49 107 2.4E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16795 8802b58dd847dbfbaaba95ec0cba50f3 119 SUPERFAMILY SSF46785 49 98 3.13E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16795 8802b58dd847dbfbaaba95ec0cba50f3 119 Pfam PF13412 Winged helix-turn-helix DNA-binding 53 96 1.3E-5 T 06-07-2017 CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 SUPERFAMILY SSF51735 163 351 3.94E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 Gene3D G3DSA:3.40.50.720 188 331 2.4E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 SMART SM00829 10 387 5.3E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 Pfam PF00107 Zinc-binding dehydrogenase 196 286 5.9E-15 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 SUPERFAMILY SSF50129 2 198 1.57E-61 T 06-07-2017 IPR011032 GroES-like CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 Gene3D G3DSA:3.90.180.10 2 187 1.7E-54 T 06-07-2017 IPR011032 GroES-like CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 150 6.4E-30 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS30995 8880cdc09b701ac36eaed118e72d490e 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 2 23 4.5E-11 T 06-07-2017 IPR027399 Alcohol dehydrogenase GroES-associated CDO28_RS20545 78f96406645e505fb61683c87d357185 215 Gene3D G3DSA:3.10.20.30 48 121 5.1E-33 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS20545 78f96406645e505fb61683c87d357185 215 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 52 107 1.3E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS20545 78f96406645e505fb61683c87d357185 215 Pfam PF01799 [2Fe-2S] binding domain 120 207 1.2E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS20545 78f96406645e505fb61683c87d357185 215 SUPERFAMILY SSF47741 131 212 4.32E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS20545 78f96406645e505fb61683c87d357185 215 Gene3D G3DSA:1.10.150.120 122 213 2.0E-31 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS20545 78f96406645e505fb61683c87d357185 215 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 86 94 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS20545 78f96406645e505fb61683c87d357185 215 SUPERFAMILY SSF54292 47 134 5.11E-27 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Pfam PF00593 TonB dependent receptor 969 1189 1.3E-6 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SUPERFAMILY SSF48452 345 508 3.41E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Pfam PF04773 FecR protein 66 160 4.5E-13 T 06-07-2017 IPR006860 FecR protein CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Gene3D G3DSA:1.25.40.10 436 608 1.1E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Gene3D G3DSA:1.25.40.10 241 435 1.2E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SUPERFAMILY SSF56935 776 1202 1.49E-29 T 06-07-2017 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Pfam PF13181 Tetratricopeptide repeat 443 473 0.046 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SMART SM00028 412 441 160.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SMART SM00028 510 543 56.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SMART SM00028 476 509 11.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SMART SM00028 544 577 44.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SMART SM00028 442 475 0.0087 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 Gene3D G3DSA:2.40.170.20 776 1202 1.5E-23 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS30095 4efb6f65365dbc53c0e7c6cb7943d74d 1202 SUPERFAMILY SSF48452 465 603 1.44E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS00150 203bc3ecfd94ebeb3e965c10eda545f0 153 SUPERFAMILY SSF75217 3 150 2.62E-40 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS00150 203bc3ecfd94ebeb3e965c10eda545f0 153 Gene3D G3DSA:3.40.1280.10 2 151 1.1E-50 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS00150 203bc3ecfd94ebeb3e965c10eda545f0 153 PIRSF PIRSF029256 3 153 7.8E-57 T 06-07-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CDO28_RS00150 203bc3ecfd94ebeb3e965c10eda545f0 153 Pfam PF00588 SpoU rRNA Methylase family 4 143 1.2E-31 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDO28_RS00150 203bc3ecfd94ebeb3e965c10eda545f0 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 4 153 30.066 T 06-07-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 Gene3D G3DSA:3.40.309.10 277 461 8.0E-71 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 37 484 8.0E-205 T 06-07-2017 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 SUPERFAMILY SSF53720 30 489 5.11E-166 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 Gene3D G3DSA:3.40.605.10 31 276 4.7E-96 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS27000 943264a0b7e00c450e9d447f18565c48 491 Pfam PF00171 Aldehyde dehydrogenase family 35 485 3.9E-170 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 2.8E-82 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 PIRSF PIRSF000538 2 495 1.7E-172 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 Gene3D G3DSA:3.30.420.40 2 251 6.7E-103 T 06-07-2017 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 Gene3D G3DSA:3.30.420.40 252 493 9.8E-91 T 06-07-2017 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 SUPERFAMILY SSF53067 4 253 4.68E-96 T 06-07-2017 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 449 6.8E-54 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 Hamap MF_00186 Glycerol kinase [glpK]. 2 497 54.688 T 06-07-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 493 3.5E-217 T 06-07-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CDO28_RS28435 fe8dae1a262ddc9bf790441310d2bb5a 497 SUPERFAMILY SSF53067 253 494 2.12E-74 T 06-07-2017 CDO28_RS28340 ca9caf10dab91460af693b78080f10e7 467 SUPERFAMILY SSF51905 18 243 5.11E-13 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28340 ca9caf10dab91460af693b78080f10e7 467 Pfam PF13454 FAD-NAD(P)-binding 23 177 3.3E-30 T 06-07-2017 CDO28_RS28340 ca9caf10dab91460af693b78080f10e7 467 Gene3D G3DSA:3.50.50.60 117 241 4.8E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28340 ca9caf10dab91460af693b78080f10e7 467 Gene3D G3DSA:3.50.50.60 17 72 4.8E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 SUPERFAMILY SSF46785 6 87 3.01E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 Gene3D G3DSA:1.10.10.10 5 88 1.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 Pfam PF03466 LysR substrate binding domain 94 292 8.7E-38 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 SUPERFAMILY SSF53850 95 293 1.12E-39 T 06-07-2017 CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 Gene3D G3DSA:3.40.190.10 95 194 2.5E-30 T 06-07-2017 CDO28_RS23955 d3b604b0ab5999c07d735960f0d9a849 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 3.6E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06400 febdea9d24c1d82a14e67438deaafbd3 161 Pfam PF00430 ATP synthase B/B' CF(0) 14 136 9.0E-24 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDO28_RS06400 febdea9d24c1d82a14e67438deaafbd3 161 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 11.512 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDO28_RS30640 07a7e90976f75dfc8474053796eab5fe 414 Gene3D G3DSA:3.30.360.10 162 398 8.2E-25 T 06-07-2017 CDO28_RS30640 07a7e90976f75dfc8474053796eab5fe 414 SUPERFAMILY SSF51735 4 154 4.25E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30640 07a7e90976f75dfc8474053796eab5fe 414 Gene3D G3DSA:3.40.50.720 3 159 6.0E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30640 07a7e90976f75dfc8474053796eab5fe 414 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 134 1.9E-18 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS30640 07a7e90976f75dfc8474053796eab5fe 414 SUPERFAMILY SSF55347 164 310 3.76E-11 T 06-07-2017 CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 Gene3D G3DSA:3.20.20.150 1 392 2.3E-133 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 393 3.7E-150 T 06-07-2017 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 391 6.8E-126 T 06-07-2017 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 402 191.553 T 06-07-2017 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 PIRSF PIRSF016049 1 395 6.1E-162 T 06-07-2017 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CDO28_RS32760 2b5a48b8c4caf91f87c5f46aa851610a 402 SUPERFAMILY SSF51658 1 386 1.93E-74 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Gene3D G3DSA:1.10.10.10 523 574 2.2E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 SUPERFAMILY SSF88659 580 682 3.92E-26 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF04546 Sigma-70, non-essential region 169 418 1.7E-43 T 06-07-2017 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF00140 Sigma-70 factor, region 1.2 127 159 9.7E-14 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 446 682 6.5E-120 T 06-07-2017 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 18 683 47.849 T 06-07-2017 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF03979 Sigma-70 factor, region 1.1 27 100 1.2E-22 T 06-07-2017 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Gene3D G3DSA:1.10.10.10 612 683 2.2E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Gene3D G3DSA:1.10.601.10 143 519 2.0E-127 T 06-07-2017 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Gene3D G3DSA:1.10.601.10 28 142 7.8E-4 T 06-07-2017 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF04539 Sigma-70 region 3 529 604 2.7E-29 T 06-07-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 643 669 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF04542 Sigma-70 region 2 450 519 2.0E-21 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 SUPERFAMILY SSF88659 523 596 3.4E-21 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 474 487 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 Pfam PF04545 Sigma-70, region 4 618 671 1.5E-18 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 447 671 2.3E-38 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 PRINTS PR00046 Major sigma-70 factor signature 474 487 6.6E-31 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 PRINTS PR00046 Major sigma-70 factor signature 498 506 6.6E-31 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 PRINTS PR00046 Major sigma-70 factor signature 622 634 6.6E-31 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 PRINTS PR00046 Major sigma-70 factor signature 658 669 6.6E-31 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 PRINTS PR00046 Major sigma-70 factor signature 643 658 6.6E-31 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 SUPERFAMILY SSF88946 144 207 3.45E-98 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15650 9562dd8081bdbc01e9b72c6c0fa9e7f3 684 SUPERFAMILY SSF88946 239 517 3.45E-98 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS17500 731aaf50d4eb80a55afb57879a71bf74 380 Gene3D G3DSA:3.90.1150.10 242 371 5.1E-14 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS17500 731aaf50d4eb80a55afb57879a71bf74 380 Gene3D G3DSA:3.40.640.10 44 241 1.6E-53 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS17500 731aaf50d4eb80a55afb57879a71bf74 380 SUPERFAMILY SSF53383 42 375 1.73E-73 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS17500 731aaf50d4eb80a55afb57879a71bf74 380 Pfam PF00155 Aminotransferase class I and II 53 358 1.7E-40 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS26475 65f15931996784c35e156c06bb5e9326 662 Gene3D G3DSA:3.40.50.300 427 606 5.2E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26475 65f15931996784c35e156c06bb5e9326 662 Pfam PF02706 Chain length determinant protein 33 214 2.8E-16 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 CDO28_RS26475 65f15931996784c35e156c06bb5e9326 662 SUPERFAMILY SSF52540 427 609 2.13E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 Pfam PF13784 Fic/DOC family N-terminal 59 140 7.5E-29 T 06-07-2017 IPR025758 Fic/DOC N-terminal CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 SUPERFAMILY SSF46785 313 391 1.9E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 SUPERFAMILY SSF140931 124 318 1.96E-47 T 06-07-2017 IPR003812 Fido domain CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 Gene3D G3DSA:1.10.3290.10 60 312 1.3E-65 T 06-07-2017 IPR003812 Fido domain CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 PIRSF PIRSF038925 33 400 1.3E-121 T 06-07-2017 IPR026287 Adenosine monophosphate-protein transferase CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 Gene3D G3DSA:1.10.10.10 313 389 3.2E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19525 623f80a1c69b628bf847ec73512ba733 408 Pfam PF02661 Fic/DOC family 146 251 9.2E-22 T 06-07-2017 IPR003812 Fido domain CDO28_RS28395 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS28395 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS11260 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS11260 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS16990 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS16990 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS08250 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS08250 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS16135 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS16135 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS17235 89b1dae5cb840638eb12626b315c225e 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS17235 89b1dae5cb840638eb12626b315c225e 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS23505 d3a95249392538471721b8af2264890b 333 Gene3D G3DSA:1.10.10.60 12 46 5.1E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23505 d3a95249392538471721b8af2264890b 333 SUPERFAMILY SSF46689 8 124 1.51E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23505 d3a95249392538471721b8af2264890b 333 Pfam PF00665 Integrase core domain 178 285 7.1E-9 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS23505 d3a95249392538471721b8af2264890b 333 Pfam PF13936 Helix-turn-helix domain 4 47 4.0E-16 T 06-07-2017 IPR025246 Transposase IS30-like HTH domain CDO28_RS23505 d3a95249392538471721b8af2264890b 333 SUPERFAMILY SSF53098 178 327 6.98E-23 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS23505 d3a95249392538471721b8af2264890b 333 Gene3D G3DSA:3.30.420.10 178 326 1.0E-9 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 Gene3D G3DSA:2.30.30.30 3 90 3.7E-25 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 Pfam PF00467 KOW motif 6 36 4.7E-7 T 06-07-2017 IPR005824 KOW CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 101 1.1E-25 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 95 21.528 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 2.1E-36 T 06-07-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 SMART SM00739 3 30 1.5E-5 T 06-07-2017 IPR005824 KOW CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 06-07-2017 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03575 71467ff4e933fe6ef7efea89c7110db8 103 SUPERFAMILY SSF50104 3 100 3.46E-34 T 06-07-2017 IPR008991 Translation protein SH3-like domain CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 SMART SM00382 377 590 3.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 SUPERFAMILY SSF52540 344 588 1.02E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 Pfam PF00005 ABC transporter 368 517 2.0E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 Pfam PF00664 ABC transporter transmembrane region 37 298 1.0E-36 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 Gene3D G3DSA:3.40.50.300 351 581 1.5E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 Gene3D G3DSA:1.20.1560.10 30 340 8.2E-62 T 06-07-2017 CDO28_RS09790 cab4f9093c5e1ef996fef2a84906dd3a 601 SUPERFAMILY SSF90123 29 338 2.35E-63 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 PRINTS PR00050 Cold shock protein signature 5 20 6.6E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 PRINTS PR00050 Cold shock protein signature 26 35 6.6E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 PRINTS PR00050 Cold shock protein signature 41 59 6.6E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 SMART SM00357 4 70 3.1E-24 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 PIRSF PIRSF002599 1 70 2.0E-21 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 Pfam PF00313 'Cold-shock' DNA-binding domain 4 68 1.5E-23 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 Gene3D G3DSA:2.40.50.140 4 68 1.6E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS18570 a61641ac58e134b5ffd7378c43316b55 70 SUPERFAMILY SSF50249 3 68 6.0E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS31930 0738964c556e40dab073d8acfdfc3b7e 143 SUPERFAMILY SSF82784 1 137 9.16E-39 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS31930 0738964c556e40dab073d8acfdfc3b7e 143 Gene3D G3DSA:2.20.25.10 1 30 1.2E-14 T 06-07-2017 CDO28_RS31930 0738964c556e40dab073d8acfdfc3b7e 143 Gene3D G3DSA:3.30.300.20 39 136 1.1E-41 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS31930 0738964c556e40dab073d8acfdfc3b7e 143 Pfam PF02566 OsmC-like protein 33 131 1.1E-17 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 1.5E-8 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 1.5E-8 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 231 248 1.5E-8 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 SUPERFAMILY SSF63829 8 301 6.32E-72 T 06-07-2017 CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 Gene3D G3DSA:2.120.10.30 23 302 1.0E-76 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS21260 775a3d0e2f01eaac1b9904de8dc16261 304 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 288 8.1E-63 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS01010 269a956084566293f0d7f8ae2e642e70 364 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 338 1.1E-43 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82714 721 804 1.05E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82866 804 1027 1.44E-44 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:3.30.2090.10 181 275 2.7E-27 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:3.30.2090.10 721 805 2.6E-25 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Pfam PF00873 AcrB/AcrD/AcrF family 1 1023 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:3.30.70.1430 38 139 6.6E-30 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.6E-104 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82693 38 130 1.11E-23 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:3.30.70.1430 568 669 1.9E-34 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82693 566 669 1.31E-29 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82693 135 182 3.14E-24 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82693 274 330 3.14E-24 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:1.10.3850.10 279 498 1.1E-57 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 Gene3D G3DSA:1.10.3850.10 814 1025 9.7E-58 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82866 300 497 1.1E-48 T 06-07-2017 CDO28_RS09645 eade5bee3568507729f9da20fe53801c 1048 SUPERFAMILY SSF82714 183 271 1.96E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 Gene3D G3DSA:3.30.360.10 143 267 2.6E-28 T 06-07-2017 CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 Gene3D G3DSA:3.30.360.10 309 359 2.6E-28 T 06-07-2017 CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 119 9.6E-19 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 SUPERFAMILY SSF55347 129 293 1.64E-32 T 06-07-2017 CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 Gene3D G3DSA:3.40.50.720 1 142 3.0E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17755 3def8abeb63a4d54f19854499e7987b3 377 SUPERFAMILY SSF51735 3 172 1.5E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 PRINTS PR00207 Flagellin signature 36 53 4.3E-6 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 PRINTS PR00207 Flagellin signature 107 130 4.3E-6 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 SUPERFAMILY SSF64518 1 394 5.23E-67 T 06-07-2017 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 Pfam PF00700 Bacterial flagellin C-terminal helical region 309 392 3.6E-19 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 136 2.7E-30 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 Gene3D G3DSA:1.20.1330.10 296 345 3.1E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 Gene3D G3DSA:1.20.1330.10 53 136 3.1E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07285 3328b95d74153cf82e0a05df6f287506 394 Gene3D G3DSA:1.20.1330.10 172 173 3.1E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS30905 a7b8b0ad53a3b135d1a250a9164cd337 98 PIRSF PIRSF029218 3 98 2.7E-25 T 06-07-2017 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 CDO28_RS30905 a7b8b0ad53a3b135d1a250a9164cd337 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 8 91 1.6E-17 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 Pfam PF08362 YcdC-like protein, C-terminal region 69 208 5.0E-38 T 06-07-2017 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 Gene3D G3DSA:1.10.10.60 50 75 3.0E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 SUPERFAMILY SSF46689 10 86 2.49E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.4E-14 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 7.9E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 7.9E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 SUPERFAMILY SSF48498 85 208 1.08E-31 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 Gene3D G3DSA:1.10.357.10 76 208 4.2E-43 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS19945 af0ffec9c514df59724308aa251e49c3 213 Gene3D G3DSA:1.10.10.60 6 49 6.1E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 SUPERFAMILY SSF53697 121 273 8.68E-20 T 06-07-2017 CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 SUPERFAMILY SSF46689 17 92 5.64E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 Pfam PF01380 SIS domain 145 271 6.6E-30 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 Gene3D G3DSA:3.40.50.10490 120 278 1.3E-19 T 06-07-2017 CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 Gene3D G3DSA:1.10.10.10 16 92 6.8E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08785 b7961c09b62670f556be764e78d7e454 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 19 81 7.9E-9 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS26195 56dd48f805ae2d2b55a8fab8856705c8 360 Gene3D G3DSA:3.40.50.720 23 148 8.2E-17 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26195 56dd48f805ae2d2b55a8fab8856705c8 360 Gene3D G3DSA:3.30.360.10 149 347 6.8E-22 T 06-07-2017 CDO28_RS26195 56dd48f805ae2d2b55a8fab8856705c8 360 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 23 132 2.7E-9 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS26195 56dd48f805ae2d2b55a8fab8856705c8 360 SUPERFAMILY SSF51735 22 167 2.33E-22 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26195 56dd48f805ae2d2b55a8fab8856705c8 360 SUPERFAMILY SSF55347 143 307 7.85E-16 T 06-07-2017 CDO28_RS17645 37441509c5370e004def9de904944652 333 Pfam PF00155 Aminotransferase class I and II 42 328 1.5E-34 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS17645 37441509c5370e004def9de904944652 333 SUPERFAMILY SSF53383 4 329 1.48E-53 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS17645 37441509c5370e004def9de904944652 333 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 7 329 1.8E-102 T 06-07-2017 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 CDO28_RS17645 37441509c5370e004def9de904944652 333 Gene3D G3DSA:3.40.640.10 45 227 9.2E-49 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS17645 37441509c5370e004def9de904944652 333 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 196 209 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS17645 37441509c5370e004def9de904944652 333 Gene3D G3DSA:3.90.1150.10 228 325 1.2E-4 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS29910 9a98f434dd5f7727e1d834c63e09397b 355 Gene3D G3DSA:3.40.190.10 9 133 3.2E-54 T 06-07-2017 CDO28_RS29910 9a98f434dd5f7727e1d834c63e09397b 355 Gene3D G3DSA:3.40.190.10 275 348 3.2E-54 T 06-07-2017 CDO28_RS29910 9a98f434dd5f7727e1d834c63e09397b 355 Gene3D G3DSA:3.40.190.10 134 274 3.8E-53 T 06-07-2017 CDO28_RS29910 9a98f434dd5f7727e1d834c63e09397b 355 Pfam PF13416 Bacterial extracellular solute-binding protein 50 308 9.3E-14 T 06-07-2017 CDO28_RS29910 9a98f434dd5f7727e1d834c63e09397b 355 SUPERFAMILY SSF53850 36 351 2.62E-39 T 06-07-2017 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 SUPERFAMILY SSF47413 5 63 8.63E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 Pfam PF13377 Periplasmic binding protein-like domain 173 334 4.1E-38 T 06-07-2017 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 06-07-2017 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 SUPERFAMILY SSF53822 64 336 2.36E-75 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 Gene3D G3DSA:1.10.260.40 6 57 2.3E-21 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 Gene3D G3DSA:3.40.50.2300 58 176 1.1E-40 T 06-07-2017 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 SMART SM00354 5 75 1.1E-24 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 1.3E-15 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS10825 872c2564526b444ae63a14bf1006688d 347 Gene3D G3DSA:3.40.50.2300 177 314 8.2E-48 T 06-07-2017 CDO28_RS12975 769e3382c40326749d372f789398406e 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 108 2.8E-6 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS12975 769e3382c40326749d372f789398406e 134 Gene3D G3DSA:3.90.1590.10 1 106 7.7E-16 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS12975 769e3382c40326749d372f789398406e 134 SUPERFAMILY SSF51316 1 110 2.3E-24 T 06-07-2017 IPR011057 Mss4-like CDO28_RS05720 e8e8504b2f0dac85cda63154efc859af 520 SUPERFAMILY SSF52540 25 390 7.56E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05720 e8e8504b2f0dac85cda63154efc859af 520 Gene3D G3DSA:3.40.50.300 212 389 9.1E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05720 e8e8504b2f0dac85cda63154efc859af 520 Gene3D G3DSA:3.40.50.300 13 116 9.1E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05720 e8e8504b2f0dac85cda63154efc859af 520 Pfam PF05872 Bacterial protein of unknown function (DUF853) 14 518 4.4E-254 T 06-07-2017 IPR033186 Helicase HerA-like C-terminal CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 Gene3D G3DSA:3.40.50.280 88 228 1.5E-52 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 SMART SM01018 14 97 3.0E-25 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 Pfam PF02310 B12 binding domain 103 208 3.4E-23 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 SUPERFAMILY SSF47644 12 93 1.31E-19 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 SUPERFAMILY SSF52242 82 227 2.49E-44 T 06-07-2017 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 Gene3D G3DSA:1.10.1240.10 11 87 1.3E-21 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17475 aa2f0fec67efc6396ddb270d86dc764f 232 Pfam PF02607 B12 binding domain 17 89 1.8E-15 T 06-07-2017 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 SUPERFAMILY SSF48179 178 471 6.73E-115 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 470 9.8E-191 T 06-07-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 SUPERFAMILY SSF51735 4 178 5.92E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 171 8.4E-51 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 360 382 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 68 97 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 251 278 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 121 146 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 169 197 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 9.1E-79 T 06-07-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 Gene3D G3DSA:1.20.5.320 441 470 2.6E-13 T 06-07-2017 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 SMART SM01350 180 471 5.4E-187 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 PIRSF PIRSF000109 1 475 1.5E-191 T 06-07-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 Gene3D G3DSA:1.10.1040.10 182 437 1.0E-100 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 Gene3D G3DSA:3.40.50.720 3 181 7.1E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 180 470 4.1E-116 T 06-07-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS17710 e946a40009fb4a0e2e27523c52ece505 476 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 255 267 - T 06-07-2017 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 Pfam PF06742 Protein of unknown function (DUF1214) 365 471 4.6E-31 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 SUPERFAMILY SSF160935 32 486 6.41E-133 T 06-07-2017 CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 Gene3D G3DSA:2.60.40.1610 96 217 9.6E-43 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 Gene3D G3DSA:2.60.120.600 314 487 3.5E-57 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 Gene3D G3DSA:1.10.3360.10 218 309 8.2E-33 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS00285 71c3508e7285120407608f032d0f1edb 487 Pfam PF06863 Protein of unknown function (DUF1254) 102 214 1.3E-18 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 SUPERFAMILY SSF46589 1 114 3.03E-28 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 227 400 3.0E-35 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PIRSF PIRSF001529 1 426 1.9E-165 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 2.3E-30 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 2.3E-30 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 2.3E-30 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 2.3E-30 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 2.3E-30 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 2.6E-154 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 SUPERFAMILY SSF55681 118 418 4.77E-97 T 06-07-2017 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 Gene3D G3DSA:3.30.930.10 107 420 1.3E-136 T 06-07-2017 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 39.89 T 06-07-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 3.5E-31 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS02705 f46f4ab40c663996af1857dac036afa5 427 Gene3D G3DSA:1.10.287.40 1 106 9.6E-29 T 06-07-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDO28_RS18635 f384596540c633058113e96f4fc0840b 211 SUPERFAMILY SSF53850 3 158 2.9E-12 T 06-07-2017 CDO28_RS18635 f384596540c633058113e96f4fc0840b 211 Pfam PF03466 LysR substrate binding domain 2 116 9.4E-10 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.8E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.8E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.8E-19 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.788 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 SMART SM01403 7 101 7.3E-60 T 06-07-2017 IPR027486 Ribosomal protein S10 domain CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 Gene3D G3DSA:3.30.70.600 4 102 5.6E-46 T 06-07-2017 IPR027486 Ribosomal protein S10 domain CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.1E-47 T 06-07-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 06-07-2017 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 SUPERFAMILY SSF54999 6 102 3.14E-40 T 06-07-2017 IPR027486 Ribosomal protein S10 domain CDO28_RS03635 4f68154a331000437d28d5da7e6052c5 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.5E-37 T 06-07-2017 IPR027486 Ribosomal protein S10 domain CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 SUPERFAMILY SSF56645 6 247 4.84E-86 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 3.5E-26 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 7.5E-44 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Gene3D G3DSA:2.40.110.10 126 223 1.1E-41 T 06-07-2017 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Gene3D G3DSA:1.20.140.10 224 385 3.6E-67 T 06-07-2017 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 1.5E-36 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 SUPERFAMILY SSF47203 233 384 3.06E-48 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS26255 7633073ae32d2fb6791cf74c5ae793d7 387 Gene3D G3DSA:1.10.540.10 5 124 4.5E-42 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:3.30.565.10 532 708 1.4E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00448 750 863 8.0E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:3.40.50.2300 749 868 6.7E-33 T 06-07-2017 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SUPERFAMILY SSF52172 751 868 2.13E-31 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00091 86 152 0.12 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00091 346 415 1.9E-4 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00091 220 287 1.3 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:1.10.287.130 473 531 9.2E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SUPERFAMILY SSF55874 535 707 1.44E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00387 586 709 5.1E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:3.30.450.20 344 464 1.6E-8 T 06-07-2017 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 88 214 9.4E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SUPERFAMILY SSF47384 472 542 7.26E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Pfam PF13188 PAS domain 86 124 0.0026 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:3.30.450.20 86 206 1.5E-9 T 06-07-2017 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Gene3D G3DSA:3.30.450.20 225 326 3.2E-4 T 06-07-2017 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SUPERFAMILY SSF55785 347 446 2.27E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 587 707 2.8E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SMART SM00388 479 545 1.9E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Pfam PF00072 Response regulator receiver domain 752 863 9.0E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 Pfam PF08448 PAS fold 352 465 5.9E-5 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 SUPERFAMILY SSF55785 86 206 2.44E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 687 5.6E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 652 5.6E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 666 5.6E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS00255 13dd6bfa517c260a656ee7b3c349faf8 869 PRINTS PR00344 Bacterial sensor protein C-terminal signature 693 706 5.6E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 284 7.9E-96 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 6.8E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 6.8E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 6.8E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 6.8E-35 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 06-07-2017 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 SMART SM01130 1 291 6.6E-148 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 64.332 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 164 - T 06-07-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 Pfam PF00701 Dihydrodipicolinate synthetase family 2 276 1.2E-88 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 Gene3D G3DSA:3.20.20.70 1 293 4.0E-116 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 SUPERFAMILY SSF51569 2 290 3.04E-105 T 06-07-2017 CDO28_RS05215 70c840a07980dcd0a56063cc4c5bcefd 294 PIRSF PIRSF001365 1 294 6.0E-93 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 5 84 9.4E-16 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 SUPERFAMILY SSF55931 100 332 3.92E-57 T 06-07-2017 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 ProSitePatterns PS00180 Glutamine synthetase signature 1. 43 60 - T 06-07-2017 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 SMART SM01230 91 333 2.8E-50 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 Gene3D G3DSA:3.30.590.10 103 332 2.7E-57 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 217 234 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 Pfam PF00120 Glutamine synthetase, catalytic domain 104 331 6.2E-16 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS29950 2718a1b3c678c555587276ac2d91dd92 344 SUPERFAMILY SSF54368 32 87 1.54E-9 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 SMART SM00116 74 122 2.1E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 SMART SM00116 10 57 1.4E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 Gene3D G3DSA:3.10.580.10 1 119 5.0E-32 T 06-07-2017 CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 SUPERFAMILY SSF54631 1 119 3.41E-32 T 06-07-2017 CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 Pfam PF00571 CBS domain 3 53 3.5E-12 T 06-07-2017 IPR000644 CBS domain CDO28_RS29060 f4e63c00d4536b9f606d3f3e5fd68696 146 Pfam PF00571 CBS domain 67 120 9.6E-11 T 06-07-2017 IPR000644 CBS domain CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 PIRSF PIRSF016184 1 305 2.5E-81 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 6 305 3.0E-62 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 Gene3D G3DSA:3.10.310.10 2 129 1.6E-36 T 06-07-2017 CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 Gene3D G3DSA:3.10.310.10 136 294 3.0E-35 T 06-07-2017 CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 SUPERFAMILY SSF54506 1 304 6.8E-63 T 06-07-2017 CDO28_RS17105 03ee8a60f30fa906d34bc1f3737ba89f 305 Pfam PF02567 Phenazine biosynthesis-like protein 8 301 9.7E-59 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 Gene3D G3DSA:3.40.50.2300 63 176 6.3E-37 T 06-07-2017 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 06-07-2017 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 2.4E-14 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 Gene3D G3DSA:3.40.50.2300 177 338 3.3E-43 T 06-07-2017 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 SUPERFAMILY SSF53822 70 339 2.16E-63 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 Gene3D G3DSA:1.10.260.40 11 62 1.9E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 SUPERFAMILY SSF47413 10 68 1.5E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 Pfam PF13377 Periplasmic binding protein-like domain 177 336 4.8E-32 T 06-07-2017 CDO28_RS20895 9c9ecd22f15cd1903f1ab3f18d3af267 340 SMART SM00354 10 80 1.0E-21 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 Gene3D G3DSA:3.40.190.10 224 242 2.3E-17 T 06-07-2017 CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 Gene3D G3DSA:3.40.190.10 32 125 2.3E-17 T 06-07-2017 CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 Gene3D G3DSA:3.40.190.10 126 204 4.9E-12 T 06-07-2017 CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 SMART SM00062 35 264 1.5E-54 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 12 313 3.4E-78 T 06-07-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 249 2.7E-28 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS02985 10566c687827f807b1a48a5d0591ae7e 341 SUPERFAMILY SSF53850 26 255 2.17E-47 T 06-07-2017 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 440 60.9 T 06-07-2017 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Pfam PF03129 Anticodon binding domain 348 439 7.0E-22 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 SUPERFAMILY SSF55681 10 238 3.68E-93 T 06-07-2017 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 SUPERFAMILY SSF55681 280 351 3.68E-93 T 06-07-2017 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 8.2E-15 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 8.2E-15 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 8.2E-15 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 8.2E-15 T 06-07-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Gene3D G3DSA:3.30.930.10 265 340 6.9E-94 T 06-07-2017 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Gene3D G3DSA:3.30.930.10 6 204 6.9E-94 T 06-07-2017 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 330 1.3E-35 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 224 1.7E-98 T 06-07-2017 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 SUPERFAMILY SSF52954 336 440 5.23E-30 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS04020 10592c2b4aa37aa378eb2b85082fbc6b 442 Gene3D G3DSA:3.40.50.800 341 440 7.6E-28 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS14675 785a3d59953c661e8223b35198e80f97 281 SUPERFAMILY SSF103481 31 135 4.32E-12 T 06-07-2017 CDO28_RS14675 785a3d59953c661e8223b35198e80f97 281 Pfam PF00892 EamA-like transporter family 4 132 1.0E-9 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS14675 785a3d59953c661e8223b35198e80f97 281 Pfam PF00892 EamA-like transporter family 146 277 3.0E-17 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS14675 785a3d59953c661e8223b35198e80f97 281 SUPERFAMILY SSF103481 180 280 4.32E-15 T 06-07-2017 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 Gene3D G3DSA:3.30.590.10 101 422 1.7E-111 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 6 434 6.5E-203 T 06-07-2017 IPR017536 Glutamine synthetase, type III GO:0004356|GO:0006542 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 Pfam PF00120 Glutamine synthetase, catalytic domain 98 430 2.6E-108 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 SMART SM01230 97 349 2.2E-112 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 SUPERFAMILY SSF55931 98 434 8.34E-105 T 06-07-2017 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 225 240 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 SUPERFAMILY SSF54368 4 95 1.23E-19 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS10150 d7233ae3f79c7fafad69857a06d74350 435 Gene3D G3DSA:3.10.20.70 5 100 1.0E-13 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS06955 65cc9b0addd59018cfab267031c354b3 302 Gene3D G3DSA:1.10.3720.10 89 297 2.5E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06955 65cc9b0addd59018cfab267031c354b3 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 20 70 2.6E-14 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS06955 65cc9b0addd59018cfab267031c354b3 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 1.9E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06955 65cc9b0addd59018cfab267031c354b3 302 SUPERFAMILY SSF161098 94 281 8.39E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17380 dc760e233ea8151eb1232ae0a7a7e54d 287 Pfam PF00561 alpha/beta hydrolase fold 45 142 6.1E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS17380 dc760e233ea8151eb1232ae0a7a7e54d 287 Gene3D G3DSA:3.40.50.1820 27 278 7.3E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS17380 dc760e233ea8151eb1232ae0a7a7e54d 287 SUPERFAMILY SSF53474 25 278 2.14E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Pfam PF08402 TOBE domain 282 353 5.3E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Gene3D G3DSA:3.40.50.300 5 235 5.4E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 SMART SM00382 28 212 2.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 SUPERFAMILY SSF50331 237 359 2.43E-28 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Pfam PF00005 ABC transporter 20 161 2.8E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Gene3D G3DSA:2.40.50.140 289 343 3.7E-15 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Gene3D G3DSA:2.40.50.100 347 360 1.1E-12 T 06-07-2017 CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 Gene3D G3DSA:2.40.50.100 240 287 1.1E-12 T 06-07-2017 CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 SUPERFAMILY SSF52540 5 243 9.64E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07140 a59f841ba6dd460d465fbe5052d5bc07 362 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 8.5E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 8.5E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 85 119 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 Gene3D G3DSA:1.10.10.10 14 165 7.8E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 SMART SM00347 47 148 2.4E-9 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 Pfam PF13463 Winged helix DNA-binding domain 54 119 1.6E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04460 97b9f776c7c414b8460b5d96fa3ca1ba 170 SUPERFAMILY SSF46785 19 163 3.33E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 SUPERFAMILY SSF53187 13 232 3.71E-88 T 06-07-2017 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 SUPERFAMILY SSF53187 340 412 3.71E-88 T 06-07-2017 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 Pfam PF07687 Peptidase dimerisation domain 219 320 4.8E-6 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 Gene3D G3DSA:3.40.630.10 355 414 7.0E-110 T 06-07-2017 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 Gene3D G3DSA:3.40.630.10 14 234 7.0E-110 T 06-07-2017 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 PIRSF PIRSF001235 13 415 3.0E-127 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 19 410 2.9E-140 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 SUPERFAMILY SSF55031 222 326 1.59E-24 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 Gene3D G3DSA:3.30.70.360 235 330 2.4E-32 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS19445 5026e07439c39301eb9876ad61dd0575 418 Pfam PF01546 Peptidase family M20/M25/M40 89 409 8.2E-32 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS15105 9abafbb0c3d686dad9f0f2dded8ab021 86 Gene3D G3DSA:3.40.1620.10 3 39 2.2E-6 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS15105 9abafbb0c3d686dad9f0f2dded8ab021 86 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 38 1.6E-5 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS15105 9abafbb0c3d686dad9f0f2dded8ab021 86 SUPERFAMILY SSF143120 2 40 2.09E-7 T 06-07-2017 CDO28_RS15105 9abafbb0c3d686dad9f0f2dded8ab021 86 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 65 2.7E-11 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS28315 32930ffaec872201d98887457035a938 161 PRINTS PR00502 NUDIX hydrolase family signature 38 52 5.4E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS28315 32930ffaec872201d98887457035a938 161 PRINTS PR00502 NUDIX hydrolase family signature 52 67 5.4E-5 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS28315 32930ffaec872201d98887457035a938 161 Pfam PF00293 NUDIX domain 2 146 5.8E-17 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS28315 32930ffaec872201d98887457035a938 161 Gene3D G3DSA:3.90.79.10 2 149 2.5E-28 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS28315 32930ffaec872201d98887457035a938 161 SUPERFAMILY SSF55811 5 149 7.45E-20 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS28315 32930ffaec872201d98887457035a938 161 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Gene3D G3DSA:3.20.20.450 625 868 2.5E-68 T 06-07-2017 IPR001633 EAL domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Pfam PF03924 CHASE domain 105 216 3.2E-20 T 06-07-2017 IPR006189 CHASE domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Pfam PF00563 EAL domain 627 858 2.4E-60 T 06-07-2017 IPR001633 EAL domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SUPERFAMILY SSF141868 626 871 1.09E-66 T 06-07-2017 IPR001633 EAL domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Pfam PF08447 PAS fold 329 412 6.1E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 448 609 2.1E-44 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 305 424 5.4E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SMART SM00267 440 610 3.6E-50 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Pfam PF00990 Diguanylate cyclase, GGDEF domain 451 606 5.5E-44 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SMART SM00052 620 863 7.0E-97 T 06-07-2017 IPR001633 EAL domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Gene3D G3DSA:3.30.70.270 453 616 7.9E-51 T 06-07-2017 CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 Gene3D G3DSA:3.30.450.20 297 417 7.7E-23 T 06-07-2017 CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SUPERFAMILY SSF55073 456 610 2.82E-44 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SMART SM01079 47 221 3.1E-46 T 06-07-2017 IPR006189 CHASE domain CDO28_RS12560 907efa5bf35443c7bb3238ea4fc275d3 876 SUPERFAMILY SSF55785 293 417 8.72E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 Pfam PF00082 Subtilase family 206 496 2.2E-43 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 443 453 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 209 220 - T 06-07-2017 IPR023827 Peptidase S8, subtilisin, Asp-active site CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 Gene3D G3DSA:3.40.50.200 138 505 4.1E-77 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 PRINTS PR00723 Subtilisin serine protease family (S8) signature 204 223 2.4E-17 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 PRINTS PR00723 Subtilisin serine protease family (S8) signature 442 458 2.4E-17 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 PRINTS PR00723 Subtilisin serine protease family (S8) signature 245 258 2.4E-17 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 SUPERFAMILY SSF52743 185 506 1.3E-71 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS18865 a3e42826486cda4791d1d9f5f4976001 511 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 249 259 - T 06-07-2017 IPR022398 Peptidase S8, subtilisin, His-active site CDO28_RS22605 f0989430c14eb8be962253017f6645cc 163 Pfam PF05751 FixH 9 152 1.4E-26 T 06-07-2017 IPR008620 Nitrogen fixation protein FixH CDO28_RS22605 f0989430c14eb8be962253017f6645cc 163 PIRSF PIRSF011386 1 160 1.4E-58 T 06-07-2017 IPR018037 Nitrogen fixation protein FixH, Proteobacterial CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 Gene3D G3DSA:3.40.50.300 15 252 1.4E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 Pfam PF00005 ABC transporter 35 176 2.3E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 Pfam PF08402 TOBE domain 271 341 2.7E-12 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 SUPERFAMILY SSF52540 20 255 5.08E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 SUPERFAMILY SSF50331 269 342 3.78E-7 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS15925 41f789627fe9cda2ac27ae2e1322f928 346 SMART SM00382 43 226 2.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 SUPERFAMILY SSF51556 3 468 3.4E-161 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 Gene3D G3DSA:1.10.2020.10 50 149 2.8E-30 T 06-07-2017 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 Hamap MF_00675 Uronate isomerase [uxaC]. 2 469 39.981 T 06-07-2017 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 Pfam PF02614 Glucuronate isomerase 19 465 1.2E-72 T 06-07-2017 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 Gene3D G3DSA:3.20.20.140 7 48 1.1E-145 T 06-07-2017 CDO28_RS27380 4d9f9c955b965c977acf8a4d34268e6c 469 Gene3D G3DSA:3.20.20.140 150 469 1.1E-145 T 06-07-2017 CDO28_RS01620 38f35879c8b480730fb6ce57efb02dd4 322 SUPERFAMILY SSF53955 17 183 5.06E-36 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS01620 38f35879c8b480730fb6ce57efb02dd4 322 Gene3D G3DSA:3.30.20.10 88 131 8.2E-6 T 06-07-2017 CDO28_RS01620 38f35879c8b480730fb6ce57efb02dd4 322 Gene3D G3DSA:1.10.101.10 194 221 5.1E-5 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS01620 38f35879c8b480730fb6ce57efb02dd4 322 Pfam PF01471 Putative peptidoglycan binding domain 193 218 9.9E-5 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 SUPERFAMILY SSF47413 2 59 6.76E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 49 8.3E-13 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 Gene3D G3DSA:3.40.50.2300 179 312 3.2E-36 T 06-07-2017 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 Gene3D G3DSA:1.10.260.40 3 54 8.5E-23 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 SMART SM00354 2 72 3.5E-20 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 Pfam PF13377 Periplasmic binding protein-like domain 174 337 3.6E-27 T 06-07-2017 CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 SUPERFAMILY SSF53822 75 342 5.89E-51 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS07165 7c8ed66eceb44c9038dc84935739fa38 356 Gene3D G3DSA:3.40.50.2300 55 178 9.2E-30 T 06-07-2017 CDO28_RS01735 87659c6b7d05f8a5e9c034a3f5d4cacb 249 SUPERFAMILY SSF50447 5 95 1.52E-13 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS01735 87659c6b7d05f8a5e9c034a3f5d4cacb 249 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 191 235 7.8E-11 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS01735 87659c6b7d05f8a5e9c034a3f5d4cacb 249 SUPERFAMILY SSF55186 99 238 2.09E-29 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 CDO28_RS01735 87659c6b7d05f8a5e9c034a3f5d4cacb 249 SMART SM00863 191 237 1.9E-10 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS01735 87659c6b7d05f8a5e9c034a3f5d4cacb 249 Pfam PF01411 tRNA synthetases class II (A) 26 98 7.3E-10 T 06-07-2017 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SUPERFAMILY SSF56037 211 396 2.62E-70 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Pfam PF03147 Ferredoxin-fold anticodon binding domain 714 807 2.2E-23 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Pfam PF01588 Putative tRNA binding domain 44 145 1.8E-23 T 06-07-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:3.30.930.10 490 699 7.9E-59 T 06-07-2017 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SUPERFAMILY SSF46955 403 474 3.66E-18 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:2.40.50.140 41 224 2.8E-50 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 807 4.9E-215 T 06-07-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:3.30.56.20 402 474 6.7E-26 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:3.30.70.380 716 807 1.8E-26 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 801 41.797 T 06-07-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:3.30.56.10 1 38 8.2E-26 T 06-07-2017 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SUPERFAMILY SSF50249 38 193 3.71E-46 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SMART SM00896 714 807 2.4E-38 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SUPERFAMILY SSF55681 467 698 1.69E-40 T 06-07-2017 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SMART SM00874 403 471 9.2E-28 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Pfam PF03484 tRNA synthetase B5 domain 406 470 1.7E-19 T 06-07-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Pfam PF03483 B3/4 domain 216 387 6.7E-65 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 Gene3D G3DSA:3.50.40.10 225 393 1.5E-79 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SMART SM00873 215 387 3.3E-86 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDO28_RS09125 ab8599a5583e7d84bf5cb1bfca3acbce 808 SUPERFAMILY SSF54991 711 807 1.7E-25 T 06-07-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 91 141 1.5E-10 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 TIGRFAM TIGR00940 2a6301s01: monovalent cation:proton antiporter 31 806 0.0 T 06-07-2017 IPR005663 Monovalent cation proton antiporter subunit A GO:0015077|GO:0030004 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 Pfam PF00361 Proton-conducting membrane transporter 155 432 2.1E-64 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 TIGRFAM TIGR00943 2a6301s02: monovalent cation:proton antiporter 866 972 1.1E-46 T 06-07-2017 IPR005281 Monovalent cation:proton antiporter, subunit B GO:0006812|GO:0008324|GO:0016021 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 245 266 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 444 463 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 132 152 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 267 293 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 179 200 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 335 347 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 104 129 4.0E-37 T 06-07-2017 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 Pfam PF13244 Domain of unknown function (DUF4040) 644 709 9.4E-19 T 06-07-2017 IPR025383 Domain of unknown function DUF4040 CDO28_RS12555 5e183daa9076f02135319cdc947a4726 999 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 848 970 1.7E-30 T 06-07-2017 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Gene3D G3DSA:3.40.50.300 720 775 2.3E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Gene3D G3DSA:3.40.50.300 573 645 2.3E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Gene3D G3DSA:3.40.50.300 377 562 4.3E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 780 0.0 T 06-07-2017 IPR014136 Ti-type conjugative transfer relaxase TraA CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 SUPERFAMILY SSF52540 497 560 5.05E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 SUPERFAMILY SSF52540 612 778 5.05E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Pfam PF13604 AAA domain 391 578 1.4E-55 T 06-07-2017 CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Pfam PF03389 MobA/MobL family 17 249 4.1E-77 T 06-07-2017 IPR005053 MobA/MobL protein CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 Pfam PF13538 UvrD-like helicase C-terminal domain 727 765 4.9E-7 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 SUPERFAMILY SSF52540 387 560 1.89E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26085 0f63718cf9a2551535249191165f5930 1539 SUPERFAMILY SSF52540 287 333 1.89E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 SUPERFAMILY SSF46894 171 245 6.46E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 ProSitePatterns PS00622 LuxR-type HTH domain signature. 199 226 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 SMART SM00421 182 239 4.9E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 Gene3D G3DSA:3.30.450.80 20 187 3.9E-7 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 Gene3D G3DSA:1.10.10.10 188 245 1.1E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 215 6.0E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 227 6.0E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 199 6.0E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 SUPERFAMILY SSF75516 20 171 2.88E-5 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS07395 18c159e6de4c3a1a53739250ef22285f 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 184 239 1.9E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 PIRSF PIRSF000538 2 498 1.9E-95 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 444 5.8E-30 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 Gene3D G3DSA:3.30.420.40 252 489 7.7E-46 T 06-07-2017 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 SUPERFAMILY SSF53067 4 252 1.52E-57 T 06-07-2017 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 358 378 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 8.7E-58 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 SUPERFAMILY SSF53067 251 494 8.53E-53 T 06-07-2017 CDO28_RS32990 1c168f2c59dfd06fa28a62aaaf07423a 509 Gene3D G3DSA:3.30.420.40 1 249 4.5E-54 T 06-07-2017 CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 Gene3D G3DSA:3.90.76.10 46 222 5.6E-30 T 06-07-2017 CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 PIRSF PIRSF002741 27 542 1.5E-67 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 SUPERFAMILY SSF53850 43 540 9.41E-95 T 06-07-2017 CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 458 2.5E-78 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 Gene3D G3DSA:3.40.190.10 223 322 6.1E-35 T 06-07-2017 CDO28_RS12250 d7f6708d6670397a06b91398ea90bab8 542 Gene3D G3DSA:3.10.105.10 323 510 1.8E-29 T 06-07-2017 CDO28_RS18735 f2fe645fe7ba0329e9617a28da902888 88 Pfam PF06233 Usg-like family 8 86 3.1E-41 T 06-07-2017 IPR009354 Usg-like CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 6.9E-10 T 06-07-2017 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 6.9E-10 T 06-07-2017 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 276 2.1E-14 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.0E-9 T 06-07-2017 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 3.0E-9 T 06-07-2017 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 267 3.0E-9 T 06-07-2017 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 Gene3D G3DSA:3.40.50.720 2 162 1.0E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 PIRSF PIRSF037495 1 444 1.6E-115 T 06-07-2017 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 Gene3D G3DSA:3.50.50.60 163 312 1.3E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24365 d717090a8e5176527f1870098a4cb5a2 452 SUPERFAMILY SSF51905 3 312 3.99E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 SUPERFAMILY SSF48452 64 173 1.28E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 SMART SM00028 130 163 17.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 SMART SM00028 62 95 3.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 SMART SM00028 96 129 0.08 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 Pfam PF14559 Tetratricopeptide repeat 73 127 1.2E-7 T 06-07-2017 CDO28_RS21165 51f2eab6da4a7484c20795813761d323 176 Gene3D G3DSA:1.25.40.10 53 173 1.3E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS08645 b0c237e2673302d18a4662c29200fdbc 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 147 2.6E-31 T 06-07-2017 IPR002178 PTS EIIA type-2 domain CDO28_RS08645 b0c237e2673302d18a4662c29200fdbc 154 Gene3D G3DSA:3.40.930.10 1 147 2.7E-43 T 06-07-2017 IPR002178 PTS EIIA type-2 domain CDO28_RS08645 b0c237e2673302d18a4662c29200fdbc 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 06-07-2017 IPR002178 PTS EIIA type-2 domain CDO28_RS08645 b0c237e2673302d18a4662c29200fdbc 154 SUPERFAMILY SSF55804 1 147 1.96E-42 T 06-07-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 CDO28_RS08645 b0c237e2673302d18a4662c29200fdbc 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 147 5.6E-56 T 06-07-2017 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 120 26.904 T 06-07-2017 IPR002930 Glycine cleavage system H-protein CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 118 1.7E-43 T 06-07-2017 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 Pfam PF01597 Glycine cleavage H-protein 2 119 1.0E-42 T 06-07-2017 IPR002930 Glycine cleavage system H-protein CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 SUPERFAMILY SSF51230 2 119 3.4E-42 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 Gene3D G3DSA:2.40.50.100 2 119 4.4E-49 T 06-07-2017 CDO28_RS02620 70b4c5ebb67d170f6550b0986a5759a3 120 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 42 71 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS09760 ab1db4095f96ebc34c9ff7ab2cd292e0 197 SUPERFAMILY SSF46689 8 93 2.15E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09760 ab1db4095f96ebc34c9ff7ab2cd292e0 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.5E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS09760 ab1db4095f96ebc34c9ff7ab2cd292e0 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.5E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS09760 ab1db4095f96ebc34c9ff7ab2cd292e0 197 Gene3D G3DSA:1.10.357.10 8 195 1.8E-32 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS09760 ab1db4095f96ebc34c9ff7ab2cd292e0 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 4.4E-18 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS21185 2bea2c056d04a1d9f75ad743fa497a59 306 SUPERFAMILY SSF52540 82 271 1.72E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21185 2bea2c056d04a1d9f75ad743fa497a59 306 PIRSF PIRSF028756 13 306 1.4E-127 T 06-07-2017 IPR016898 Polyphosphate kinase 2 CDO28_RS21185 2bea2c056d04a1d9f75ad743fa497a59 306 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 53 277 2.8E-110 T 06-07-2017 IPR022488 Polyphosphate kinase-2-related CDO28_RS21185 2bea2c056d04a1d9f75ad743fa497a59 306 Gene3D G3DSA:3.40.50.300 50 285 2.7E-104 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21185 2bea2c056d04a1d9f75ad743fa497a59 306 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 53 277 3.1E-110 T 06-07-2017 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 CDO28_RS15375 9cb45c1a89c5a2bb5ad142961ee21cb8 183 Pfam PF00583 Acetyltransferase (GNAT) family 55 126 4.1E-9 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS15375 9cb45c1a89c5a2bb5ad142961ee21cb8 183 SUPERFAMILY SSF55729 18 139 2.66E-19 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15375 9cb45c1a89c5a2bb5ad142961ee21cb8 183 Gene3D G3DSA:3.40.630.30 23 129 8.4E-15 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 Pfam PF13377 Periplasmic binding protein-like domain 197 351 1.9E-19 T 06-07-2017 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 SUPERFAMILY SSF47413 13 71 1.16E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.0E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 SMART SM00354 12 82 1.7E-12 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 Gene3D G3DSA:3.40.50.2300 176 351 5.5E-37 T 06-07-2017 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 Gene3D G3DSA:3.40.50.2300 65 175 6.8E-29 T 06-07-2017 CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 SUPERFAMILY SSF53822 70 325 1.35E-48 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27480 3ce73bf99b3e91140fbacfba9536fe93 352 Gene3D G3DSA:1.10.260.40 14 64 1.2E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 Gene3D G3DSA:3.40.50.1820 357 434 5.1E-12 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 Gene3D G3DSA:3.40.50.1820 188 323 5.1E-12 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 171 436 7.7E-76 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 PIRSF PIRSF033909 38 463 2.1E-120 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 SUPERFAMILY SSF53474 367 436 3.76E-16 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25445 4e6381f6bbdbcf16a38191555dbfcd72 463 SUPERFAMILY SSF53474 184 332 3.76E-16 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 Gene3D G3DSA:3.40.50.720 38 281 3.4E-81 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 52 281 2.8E-60 T 06-07-2017 CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 1.7E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 SUPERFAMILY SSF51735 41 281 2.23E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 1.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 1.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30955 63a6068e6f99e41e5c91094694549cc2 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 1.5E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26540 823e5e16d9026f1698a5cc4da404ab04 256 SUPERFAMILY SSF88713 38 254 9.45E-14 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS26540 823e5e16d9026f1698a5cc4da404ab04 256 Gene3D G3DSA:3.20.20.370 37 255 4.6E-11 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26540 823e5e16d9026f1698a5cc4da404ab04 256 Pfam PF01522 Polysaccharide deacetylase 34 152 4.8E-5 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 Hamap MF_00813 Probable allantoicase [alc]. 4 335 57.352 T 06-07-2017 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 Gene3D G3DSA:2.60.120.260 175 335 6.7E-53 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 Gene3D G3DSA:2.60.120.260 14 169 3.8E-59 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 SUPERFAMILY SSF49785 178 335 5.53E-52 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 Pfam PF03561 Allantoicase repeat 24 167 9.1E-46 T 06-07-2017 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 Pfam PF03561 Allantoicase repeat 189 332 1.0E-43 T 06-07-2017 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 PIRSF PIRSF016516 1 336 9.0E-141 T 06-07-2017 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 SUPERFAMILY SSF49785 14 169 1.32E-57 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS26680 76b303abf0596d887fab61c604886afe 340 TIGRFAM TIGR02961 allantoicase: allantoicase 15 333 7.2E-137 T 06-07-2017 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 CDO28_RS13255 d99e0c1625eba06928c8bda476728d97 62 Pfam PF06698 Protein of unknown function (DUF1192) 5 62 2.7E-26 T 06-07-2017 IPR009579 Protein of unknown function DUF1192 CDO28_RS10640 1862cbc202e8c9b39c8b88301f39a9df 180 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 42 180 6.5E-48 T 06-07-2017 IPR014351 Conserved hypothetical protein CHP00701 CDO28_RS10640 1862cbc202e8c9b39c8b88301f39a9df 180 Pfam PF03653 Uncharacterised protein family (UPF0093) 40 180 3.1E-57 T 06-07-2017 IPR005265 Uncharacterised protein family UPF0093 CDO28_RS10640 1862cbc202e8c9b39c8b88301f39a9df 180 PIRSF PIRSF004638 35 180 3.3E-67 T 06-07-2017 IPR005265 Uncharacterised protein family UPF0093 CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 Gene3D G3DSA:3.90.76.10 66 216 8.2E-36 T 06-07-2017 CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 104 126 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 PIRSF PIRSF002741 11 520 7.6E-66 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 Gene3D G3DSA:3.10.105.10 291 490 1.7E-32 T 06-07-2017 CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 98 446 1.7E-72 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS15980 b24f2f4508b2022a0645106eead47e5c 529 SUPERFAMILY SSF53850 45 511 1.26E-113 T 06-07-2017 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 Pfam PF00480 ROK family 96 380 1.1E-46 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 Gene3D G3DSA:3.30.420.40 223 360 7.5E-44 T 06-07-2017 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 Pfam PF13412 Winged helix-turn-helix DNA-binding 18 60 1.3E-7 T 06-07-2017 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 SUPERFAMILY SSF46785 13 76 3.77E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 SUPERFAMILY SSF53067 85 382 9.01E-51 T 06-07-2017 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 Gene3D G3DSA:3.30.420.40 84 222 2.3E-35 T 06-07-2017 CDO28_RS20380 b2527832346469b09c97b246e2b454e2 392 Gene3D G3DSA:1.10.10.10 13 79 1.7E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13995 07a3d0c6b566fc25c840695827362cd1 399 SUPERFAMILY SSF103473 8 390 7.06E-53 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS13995 07a3d0c6b566fc25c840695827362cd1 399 Gene3D G3DSA:1.20.1250.20 209 395 1.1E-9 T 06-07-2017 CDO28_RS13995 07a3d0c6b566fc25c840695827362cd1 399 Gene3D G3DSA:1.20.1250.20 25 201 8.7E-25 T 06-07-2017 CDO28_RS13995 07a3d0c6b566fc25c840695827362cd1 399 Pfam PF07690 Major Facilitator Superfamily 24 352 7.6E-39 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS13995 07a3d0c6b566fc25c840695827362cd1 399 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 387 2.6E-96 T 06-07-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 516 620 9.3E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 Gene3D G3DSA:3.30.565.10 477 618 1.0E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 Gene3D G3DSA:1.10.287.130 404 469 7.4E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 PIRSF PIRSF036431 11 621 2.1E-187 T 06-07-2017 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 Gene3D G3DSA:3.30.450.20 111 198 2.2E-4 T 06-07-2017 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 SUPERFAMILY SSF103190 99 205 3.14E-11 T 06-07-2017 IPR029151 Periplasmic sensor domain-like CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 SMART SM00388 405 473 1.3E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 SUPERFAMILY SSF55874 479 618 3.01E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 SMART SM00387 515 621 4.4E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 568 8.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 601 8.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 619 8.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 582 8.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 Pfam PF00512 His Kinase A (phospho-acceptor) domain 406 471 1.9E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS30355 835f390516694faeebf2012f52f4a5cc 621 SUPERFAMILY SSF47384 394 470 4.51E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS00910 79db583dbf304254717a3df030864a8d 215 Gene3D G3DSA:2.40.160.20 40 215 2.1E-35 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS00910 79db583dbf304254717a3df030864a8d 215 SUPERFAMILY SSF56925 42 215 2.12E-32 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS00910 79db583dbf304254717a3df030864a8d 215 Pfam PF13505 Outer membrane protein beta-barrel domain 25 215 1.9E-21 T 06-07-2017 IPR027385 Outer membrane protein beta-barrel CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 Pfam PF01895 PhoU domain 341 421 1.4E-8 T 06-07-2017 IPR026022 PhoU domain CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 Pfam PF01895 PhoU domain 449 529 2.1E-5 T 06-07-2017 IPR026022 PhoU domain CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 Pfam PF02690 Na+/Pi-cotransporter 16 150 6.4E-34 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 SUPERFAMILY SSF109755 328 533 8.37E-35 T 06-07-2017 CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 70 522 4.3E-106 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 Gene3D G3DSA:1.20.58.220 444 529 9.0E-7 T 06-07-2017 CDO28_RS01065 c4aaa1e5fc1fbe0394b6da6bd9eb0490 548 Gene3D G3DSA:1.20.58.220 330 421 2.6E-8 T 06-07-2017 CDO28_RS17370 6abde40995ccefbcb107b111d15e6f5d 321 SUPERFAMILY SSF161111 21 246 2.48E-50 T 06-07-2017 CDO28_RS17370 6abde40995ccefbcb107b111d15e6f5d 321 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 319 3.5E-69 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDO28_RS17370 6abde40995ccefbcb107b111d15e6f5d 321 Pfam PF01545 Cation efflux family 29 245 1.5E-35 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDO28_RS17370 6abde40995ccefbcb107b111d15e6f5d 321 Gene3D G3DSA:1.20.1510.10 24 245 4.5E-49 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain CDO28_RS11630 b7947293bdc341534a9fb1f93a28bd9b 177 Pfam PF00719 Inorganic pyrophosphatase 18 173 9.1E-55 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 CDO28_RS11630 b7947293bdc341534a9fb1f93a28bd9b 177 Gene3D G3DSA:3.90.80.10 5 174 8.6E-62 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 CDO28_RS11630 b7947293bdc341534a9fb1f93a28bd9b 177 SUPERFAMILY SSF50324 4 174 9.29E-68 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 CDO28_RS11630 b7947293bdc341534a9fb1f93a28bd9b 177 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.871 T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 CDO28_RS11630 b7947293bdc341534a9fb1f93a28bd9b 177 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 06-07-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 CDO28_RS04475 a701d76e3c26370125f703eaa5b01919 154 Pfam PF06271 RDD family 22 145 1.4E-18 T 06-07-2017 IPR010432 RDD CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 Pfam PF12840 Helix-turn-helix domain 7 59 3.2E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 SMART SM00418 6 87 2.8E-16 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 Gene3D G3DSA:1.10.10.10 2 105 1.2E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 1.7E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.7E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.7E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS30320 e2995b4d8febcc0485a9ff315b8fcec5 112 SUPERFAMILY SSF46785 1 98 2.29E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18600 6ed4bcec2f8cf7e5440fdd117f3830f8 117 Pfam PF04342 Putative member of DMT superfamily (DUF486) 13 115 1.2E-44 T 06-07-2017 IPR007437 Putative member of DMT superfamily CDO28_RS18600 6ed4bcec2f8cf7e5440fdd117f3830f8 117 PIRSF PIRSF021239 6 117 2.9E-50 T 06-07-2017 IPR007437 Putative member of DMT superfamily CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 325 8.6E-29 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Gene3D G3DSA:3.40.50.970 364 538 4.6E-59 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 419 438 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 SUPERFAMILY SSF52467 153 351 1.4E-38 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 SUPERFAMILY SSF52518 364 539 1.6E-58 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Gene3D G3DSA:3.40.50.1220 180 333 2.8E-38 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 170 4.5E-54 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Gene3D G3DSA:3.40.50.970 2 177 2.2E-62 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 529 1.5E-44 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS16240 95a930cd4897abfbd39ff2b8e8fa9b49 548 SUPERFAMILY SSF52518 1 180 6.8E-52 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Pfam PF00171 Aldehyde dehydrogenase family 588 1027 2.5E-110 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 84 195 1.6E-46 T 06-07-2017 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Gene3D G3DSA:3.20.20.220 197 545 1.2E-111 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Gene3D G3DSA:1.20.5.550 27 77 2.8E-19 T 06-07-2017 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 SUPERFAMILY SSF53720 585 1034 2.49E-122 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 SUPERFAMILY SSF51730 198 547 7.85E-118 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Pfam PF01619 Proline dehydrogenase 205 502 6.3E-95 T 06-07-2017 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 SUPERFAMILY SSF81935 28 197 3.53E-64 T 06-07-2017 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Gene3D G3DSA:1.10.2060.10 78 196 6.9E-53 T 06-07-2017 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Gene3D G3DSA:3.40.309.10 825 1012 4.6E-44 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 Gene3D G3DSA:3.40.605.10 586 824 6.9E-64 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 837 848 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 539 1033 1.6E-223 T 06-07-2017 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS08185 e45243b31d33597d70db478fac73af30 1233 PIRSF PIRSF000197 14 1233 0.0 T 06-07-2017 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDO28_RS16630 9ce7e59ea586f0ca296f81c229052241 102 SUPERFAMILY SSF158587 1 101 2.62E-35 T 06-07-2017 IPR023154 Jann4075-like domain CDO28_RS16630 9ce7e59ea586f0ca296f81c229052241 102 Pfam PF11015 Protein of unknown function (DUF2853) 3 99 9.1E-36 T 06-07-2017 IPR021274 Protein of unknown function DUF2853 CDO28_RS16630 9ce7e59ea586f0ca296f81c229052241 102 Gene3D G3DSA:1.10.238.120 1 101 4.6E-39 T 06-07-2017 IPR023154 Jann4075-like domain CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 4.3E-39 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 PIRSF PIRSF000429 1 400 4.9E-127 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 06-07-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 06-07-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Pfam PF00108 Thiolase, N-terminal domain 5 268 5.4E-77 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 400 1.6E-209 T 06-07-2017 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Gene3D G3DSA:3.40.47.10 154 199 9.7E-53 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Gene3D G3DSA:3.40.47.10 282 399 9.7E-53 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 SUPERFAMILY SSF53901 276 399 6.13E-41 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 SUPERFAMILY SSF53901 3 275 4.21E-82 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Gene3D G3DSA:3.40.47.10 200 281 2.7E-69 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 Gene3D G3DSA:3.40.47.10 4 125 2.7E-69 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS30230 2eedafa23d8f3adadcc3576e29634733 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 1.9E-132 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS17185 69283be8a6486dc1a4f03302981409d1 229 Pfam PF00717 Peptidase S24-like 143 212 2.6E-13 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS17185 69283be8a6486dc1a4f03302981409d1 229 Gene3D G3DSA:2.10.109.10 137 209 2.6E-17 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS17185 69283be8a6486dc1a4f03302981409d1 229 Gene3D G3DSA:1.10.260.40 5 69 1.9E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS17185 69283be8a6486dc1a4f03302981409d1 229 SUPERFAMILY SSF47413 4 69 1.13E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS17185 69283be8a6486dc1a4f03302981409d1 229 SUPERFAMILY SSF51306 101 213 6.28E-17 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Gene3D G3DSA:2.30.30.40 607 628 3.8E-21 T 06-07-2017 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Gene3D G3DSA:2.30.30.40 695 739 3.8E-21 T 06-07-2017 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SMART SM00260 599 740 9.4E-43 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Gene3D G3DSA:1.10.287.560 360 422 1.4E-19 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SUPERFAMILY SSF55874 425 605 1.83E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SMART SM01231 358 421 2.3E-18 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Gene3D G3DSA:3.30.565.10 425 606 1.1E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SMART SM00073 3 100 7.2E-37 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 606 1.8E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SUPERFAMILY SSF47226 2 127 4.71E-31 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SUPERFAMILY SSF50341 606 740 3.27E-26 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SMART SM00387 466 607 2.0E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Pfam PF01584 CheW-like domain 612 741 5.4E-22 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 585 2.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 525 2.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 604 2.4E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Gene3D G3DSA:1.20.120.160 1 141 1.2E-39 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 360 421 2.1E-17 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 Pfam PF01627 Hpt domain 5 95 1.2E-18 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS07455 20cfb462dfb27f7a3c9e5460a78a7098 758 SUPERFAMILY SSF47384 360 422 1.88E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 Gene3D G3DSA:1.10.150.120 128 206 3.4E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 Gene3D G3DSA:3.10.20.30 55 127 2.8E-31 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 Pfam PF01799 [2Fe-2S] binding domain 126 198 1.5E-26 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 SUPERFAMILY SSF47741 137 204 1.22E-26 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 SUPERFAMILY SSF54292 53 141 3.93E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 92 100 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS27725 86ab14de5d611eee71a7e8b5296dc197 207 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 58 109 4.7E-7 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Gene3D G3DSA:1.20.5.480 270 310 2.6E-7 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 PIRSF PIRSF036298 17 324 1.1E-152 T 06-07-2017 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 SUPERFAMILY SSF54862 45 292 1.78E-67 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 25 307 1.7E-161 T 06-07-2017 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 150 161 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Gene3D G3DSA:3.30.70.20 128 170 4.8E-20 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Pfam PF13247 4Fe-4S dicluster domain 109 205 1.8E-21 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Gene3D G3DSA:3.30.70.20 171 269 2.1E-27 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Gene3D G3DSA:3.30.70.20 48 64 2.4E-12 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Gene3D G3DSA:3.30.70.20 99 127 2.4E-12 T 06-07-2017 CDO28_RS20695 bc172c1cc4046cc943c5ce6d2a0442bf 330 Pfam PF09163 Formate dehydrogenase N, transmembrane 263 306 8.0E-15 T 06-07-2017 IPR015246 Formate dehydrogenase, transmembrane CDO28_RS01900 3d59dd70c7addb73165d1be50cc5a05b 298 Pfam PF01343 Peptidase family S49 132 274 8.1E-31 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CDO28_RS01900 3d59dd70c7addb73165d1be50cc5a05b 298 SUPERFAMILY SSF52096 52 177 1.69E-32 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS01900 3d59dd70c7addb73165d1be50cc5a05b 298 SUPERFAMILY SSF52096 208 270 1.69E-32 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS01900 3d59dd70c7addb73165d1be50cc5a05b 298 Gene3D G3DSA:3.90.226.10 57 173 7.9E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS01900 3d59dd70c7addb73165d1be50cc5a05b 298 Gene3D G3DSA:3.90.226.10 242 275 7.9E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS13820 a4057b520be5d6b03aa1261f4fa466cd 308 SUPERFAMILY SSF48179 178 288 5.1E-34 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS13820 a4057b520be5d6b03aa1261f4fa466cd 308 SUPERFAMILY SSF51735 9 174 7.79E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13820 a4057b520be5d6b03aa1261f4fa466cd 308 Gene3D G3DSA:3.40.50.720 5 179 5.2E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13820 a4057b520be5d6b03aa1261f4fa466cd 308 Pfam PF02153 Prephenate dehydrogenase 21 278 3.4E-77 T 06-07-2017 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 CDO28_RS26650 54735b7781350a99e2158c9dcebb24a1 307 SUPERFAMILY SSF53590 2 302 6.02E-73 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS26650 54735b7781350a99e2158c9dcebb24a1 307 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 293 2.8E-52 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS26650 54735b7781350a99e2158c9dcebb24a1 307 Gene3D G3DSA:3.90.245.10 3 302 1.1E-74 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.8E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.8E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.8E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.8E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 2.5E-99 T 06-07-2017 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 Gene3D G3DSA:3.40.50.720 1 244 1.7E-88 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 7.6E-65 T 06-07-2017 CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 1.7E-6 T 06-07-2017 CDO28_RS04795 c9ae79c46469d96fb04f43a3071d1f2d 245 SUPERFAMILY SSF51735 6 244 5.63E-85 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 SUPERFAMILY SSF48179 163 292 2.83E-37 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 PIRSF PIRSF000103 1 294 1.2E-71 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 SUPERFAMILY SSF51735 3 164 6.62E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 Gene3D G3DSA:1.10.1040.10 165 292 1.4E-40 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 293 1.9E-124 T 06-07-2017 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 5.8E-36 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 2.9E-48 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS29690 afc6081e4cee7ad285234c99154c8dad 294 Gene3D G3DSA:3.40.50.720 2 163 3.5E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 16 317 6.1E-132 T 06-07-2017 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 Gene3D G3DSA:3.40.50.1100 49 146 8.9E-41 T 06-07-2017 CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 Gene3D G3DSA:3.40.50.1100 147 318 1.7E-72 T 06-07-2017 CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 305 8.7E-69 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 16 317 3.4E-128 T 06-07-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDO28_RS08860 7f7c4ae33c3a64ec015f6696f7ebbaab 322 SUPERFAMILY SSF53686 12 317 1.31E-100 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 SUPERFAMILY SSF46689 194 243 4.48E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 Pfam PF12833 Helix-turn-helix domain 164 242 2.8E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 Gene3D G3DSA:1.10.10.60 139 195 7.9E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 SMART SM00342 158 241 7.1E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 Gene3D G3DSA:1.10.10.60 196 243 3.6E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21590 b0ac493034cb3c42bec1bc0e9101af72 244 SUPERFAMILY SSF46689 144 192 5.82E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Gene3D G3DSA:2.30.30.30 121 196 1.9E-32 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 4.5E-31 T 06-07-2017 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 1.9E-123 T 06-07-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 SUPERFAMILY SSF50104 127 272 1.87E-60 T 06-07-2017 IPR008991 Translation protein SH3-like domain CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Gene3D G3DSA:2.40.50.140 1 114 3.1E-48 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 45.894 T 06-07-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Gene3D G3DSA:4.10.950.10 197 273 3.8E-33 T 06-07-2017 IPR014726 Ribosomal protein L2, domain 3 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 SMART SM01383 42 118 1.4E-43 T 06-07-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 PIRSF PIRSF002158 12 276 7.5E-98 T 06-07-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 2.3E-55 T 06-07-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 SMART SM01382 125 253 3.5E-89 T 06-07-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 SUPERFAMILY SSF50249 2 122 1.37E-45 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03615 77a15fc13c3a70b68ef00fdf0b30049c 278 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 06-07-2017 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 SUPERFAMILY SSF56935 416 549 5.5E-5 T 06-07-2017 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 PIRSF PIRSF006076 2 776 4.1E-246 T 06-07-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 40 776 2.6E-238 T 06-07-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF07244 Surface antigen variable number repeat 188 275 1.3E-17 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF07244 Surface antigen variable number repeat 280 357 7.1E-8 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF07244 Surface antigen variable number repeat 361 430 2.8E-13 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF07244 Surface antigen variable number repeat 40 105 5.6E-8 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF07244 Surface antigen variable number repeat 109 184 2.9E-13 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Pfam PF01103 Surface antigen 462 776 5.0E-86 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 CDO28_RS02860 fe8f5aee411b00738dc3795a40ca534d 776 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 11 776 23.648 T 06-07-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDO28_RS27120 b4a7cc206a1fd3d42c2d9e51e0e1aaf3 588 Pfam PF08019 Domain of unknown function (DUF1705) 67 214 2.8E-42 T 06-07-2017 IPR012549 Domain of unknown function DUF1705 GO:0016021 CDO28_RS27120 b4a7cc206a1fd3d42c2d9e51e0e1aaf3 588 Gene3D G3DSA:3.40.720.10 246 537 1.5E-10 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS27120 b4a7cc206a1fd3d42c2d9e51e0e1aaf3 588 Pfam PF00884 Sulfatase 246 534 8.0E-47 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS27120 b4a7cc206a1fd3d42c2d9e51e0e1aaf3 588 SUPERFAMILY SSF53649 246 537 1.72E-14 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS02995 fdbe6e4909067dfeda7b9fd8d85874d5 384 Gene3D G3DSA:1.10.3720.10 169 377 6.4E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02995 fdbe6e4909067dfeda7b9fd8d85874d5 384 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 191 372 5.6E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02995 fdbe6e4909067dfeda7b9fd8d85874d5 384 SUPERFAMILY SSF161098 172 360 9.81E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02995 fdbe6e4909067dfeda7b9fd8d85874d5 384 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 171 269 1.3E-22 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 Gene3D G3DSA:1.20.1260.10 2 154 5.4E-57 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 65 85 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 86 106 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 128 149 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 44 64 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 3 22 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 23 43 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PRINTS PR00601 Bacterioferritin signature 107 127 5.8E-59 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 SUPERFAMILY SSF47240 2 152 8.94E-49 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 Pfam PF00210 Ferritin-like domain 8 144 3.4E-34 T 06-07-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 151 5.7E-56 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS11505 f417273137df3e2c7835fc2bfe6d649b 161 PIRSF PIRSF002560 1 157 4.5E-63 T 06-07-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 Pfam PF02056 Family 4 glycosyl hydrolase 2 177 1.6E-39 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 135 165 - T 06-07-2017 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 Gene3D G3DSA:3.40.50.720 1 163 3.1E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 135 152 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 186 198 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 106 126 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 71 87 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 160 171 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 92 105 9.8E-33 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 190 436 4.7E-46 T 06-07-2017 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 Gene3D G3DSA:3.90.110.10 330 460 4.3E-84 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 Gene3D G3DSA:3.90.110.10 164 289 4.3E-84 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 SUPERFAMILY SSF56327 168 281 4.63E-60 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 SUPERFAMILY SSF56327 333 460 4.63E-60 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS29175 9c2ef57de6b7a3732af47e721db8989a 461 SUPERFAMILY SSF51735 1 163 1.82E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 SMART SM00304 199 254 8.4E-4 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 SUPERFAMILY SSF55874 323 479 2.23E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 Gene3D G3DSA:3.30.565.10 330 478 3.1E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 479 6.2E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 Pfam PF00672 HAMP domain 180 251 1.2E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 3.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 3.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 478 3.5E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08285 a399e2d7ced58e4fb4b718d8e92abccc 493 SMART SM00387 367 481 8.0E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS13125 68e6277b9de1078630c1ec68047ee77a 208 Pfam PF01063 Amino-transferase class IV 6 203 1.7E-25 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS13125 68e6277b9de1078630c1ec68047ee77a 208 Gene3D G3DSA:3.30.470.10 2 39 1.2E-5 T 06-07-2017 CDO28_RS13125 68e6277b9de1078630c1ec68047ee77a 208 SUPERFAMILY SSF56752 2 202 1.26E-35 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS13125 68e6277b9de1078630c1ec68047ee77a 208 Gene3D G3DSA:3.20.10.10 90 201 7.2E-23 T 06-07-2017 CDO28_RS01185 ec739fb6f3b64bace0ef28ef00e95a6f 253 Pfam PF00994 Probable molybdopterin binding domain 10 170 2.4E-32 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01185 ec739fb6f3b64bace0ef28ef00e95a6f 253 SUPERFAMILY SSF53218 7 202 3.8E-40 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01185 ec739fb6f3b64bace0ef28ef00e95a6f 253 SMART SM00852 10 172 2.1E-32 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01185 ec739fb6f3b64bace0ef28ef00e95a6f 253 Gene3D G3DSA:3.40.980.10 7 207 1.4E-38 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 SUPERFAMILY SSF55186 66 243 9.68E-64 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 74 644 9.1E-204 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.10.20.30 5 66 6.3E-19 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.30.54.20 132 188 2.5E-23 T 06-07-2017 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 SUPERFAMILY SSF52954 540 642 1.66E-27 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 PRINTS PR01047 Threonyl-tRNA synthetase signature 336 364 1.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 PRINTS PR01047 Threonyl-tRNA synthetase signature 547 559 1.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 PRINTS PR01047 Threonyl-tRNA synthetase signature 520 533 1.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 PRINTS PR01047 Threonyl-tRNA synthetase signature 369 392 1.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 PRINTS PR01047 Threonyl-tRNA synthetase signature 477 505 1.0E-53 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 SUPERFAMILY SSF55681 245 539 6.08E-89 T 06-07-2017 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 328 542 6.6E-42 T 06-07-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.30.930.10 244 543 5.8E-115 T 06-07-2017 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 SMART SM00863 171 221 3.6E-23 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Pfam PF03129 Anticodon binding domain 554 642 7.6E-19 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 68 647 32.257 T 06-07-2017 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.40.50.800 544 644 7.4E-30 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 SUPERFAMILY SSF81271 6 62 8.83E-12 T 06-07-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 221 7.6E-13 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.30.980.10 189 225 6.0E-41 T 06-07-2017 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Gene3D G3DSA:3.30.980.10 69 131 6.0E-41 T 06-07-2017 CDO28_RS03260 dd4deae33203f34883505c852ae352de 660 Pfam PF02824 TGS domain 8 59 1.1E-6 T 06-07-2017 IPR004095 TGS KEGG: 00970+6.1.1.3 CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 Pfam PF02540 NAD synthase 26 112 1.3E-16 T 06-07-2017 IPR022310 NAD/GMP synthase CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 Pfam PF02540 NAD synthase 175 308 6.5E-29 T 06-07-2017 IPR022310 NAD/GMP synthase CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 Gene3D G3DSA:3.40.50.620 161 307 2.9E-57 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 Gene3D G3DSA:3.40.50.620 16 111 2.9E-57 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 19 323 29.933 T 06-07-2017 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 SUPERFAMILY SSF52402 178 307 1.52E-53 T 06-07-2017 CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 SUPERFAMILY SSF52402 17 137 1.52E-53 T 06-07-2017 CDO28_RS29535 a4a0c05ac85fb5022d90f32d52df9496 334 TIGRFAM TIGR00552 nadE: NAD+ synthetase 174 299 1.3E-29 T 06-07-2017 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 SUPERFAMILY SSF56235 31 567 4.05E-185 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 378 402 - T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 Pfam PF01019 Gamma-glutamyltranspeptidase 53 561 8.0E-179 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 133 151 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 378 396 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 402 420 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 467 484 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 280 299 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 443 458 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 151 170 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 60 85 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 250 266 5.3E-81 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS30210 830f240a74a1b24cb7612a1c33c94b24 581 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 38 554 2.8E-174 T 06-07-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 Gene3D G3DSA:3.40.50.880 252 446 1.6E-27 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 437 6.3E-55 T 06-07-2017 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 SUPERFAMILY SSF52317 253 446 6.27E-36 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 231 6.3E-26 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 475 2.0E-133 T 06-07-2017 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 Gene3D G3DSA:3.40.50.300 3 230 3.7E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 SUPERFAMILY SSF52540 1 237 2.82E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17550 1feed4a98f2791f50ba4a698991e8532 484 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 484 190.727 T 06-07-2017 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CDO28_RS17460 c0b043f90c21fb2e64e6c2e2c2e9f3fa 266 SUPERFAMILY SSF53328 64 246 3.01E-29 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS17460 c0b043f90c21fb2e64e6c2e2c2e9f3fa 266 Pfam PF00551 Formyl transferase 21 202 1.0E-12 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS17460 c0b043f90c21fb2e64e6c2e2c2e9f3fa 266 Gene3D G3DSA:3.40.50.170 105 239 9.3E-33 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS17460 c0b043f90c21fb2e64e6c2e2c2e9f3fa 266 Gene3D G3DSA:3.40.50.170 18 63 9.3E-33 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 SUPERFAMILY SSF53474 3 333 1.65E-69 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 18 507 2.6E-66 T 06-07-2017 IPR005674 CocE/Serine esterase GO:0016787 CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 Gene3D G3DSA:2.60.120.260 324 514 7.5E-47 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 Gene3D G3DSA:3.40.50.1820 213 313 3.5E-74 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 Gene3D G3DSA:3.40.50.1820 5 154 3.5E-74 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 SUPERFAMILY SSF49785 369 524 1.83E-51 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 SUPERFAMILY SSF49785 286 336 1.83E-51 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 SMART SM00939 286 543 2.5E-73 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 298 525 9.4E-45 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS15950 abffdac23a8c7f28829214897cc3c64f 665 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 18 269 6.1E-70 T 06-07-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CDO28_RS03005 462f7ae9eee523c99d33e4549751ded2 92 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 10 86 2.9E-9 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS03005 462f7ae9eee523c99d33e4549751ded2 92 SUPERFAMILY SSF143011 9 87 4.45E-19 T 06-07-2017 CDO28_RS03005 462f7ae9eee523c99d33e4549751ded2 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 9 87 2.3E-14 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 Gene3D G3DSA:3.10.20.10 37 122 2.5E-27 T 06-07-2017 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 SUPERFAMILY SSF53927 17 274 1.44E-75 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 Gene3D G3DSA:3.40.140.10 141 277 2.0E-46 T 06-07-2017 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 9 274 31.496 T 06-07-2017 IPR003786 Protein FdhD GO:0016783 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 274 3.3E-58 T 06-07-2017 IPR003786 Protein FdhD GO:0016783 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 PIRSF PIRSF015626 4 278 4.7E-75 T 06-07-2017 IPR003786 Protein FdhD GO:0016783 CDO28_RS12030 418bc25b26b8204c0495e43365cb39a4 290 Pfam PF02634 FdhD/NarQ family 36 273 1.1E-74 T 06-07-2017 IPR003786 Protein FdhD GO:0016783 CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 SUPERFAMILY SSF46785 2 85 1.51E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 Gene3D G3DSA:1.10.10.10 4 85 1.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 SMART SM00418 5 82 5.1E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 Pfam PF01022 Bacterial regulatory protein, arsR family 12 57 8.2E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 8.2E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 8.2E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS13205 1251f30f3ecd8771b5428492f7762666 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 8.2E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 Pfam PF13602 Zinc-binding dehydrogenase 200 328 2.3E-20 T 06-07-2017 CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 SUPERFAMILY SSF50129 5 155 9.43E-38 T 06-07-2017 IPR011032 GroES-like CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 Gene3D G3DSA:3.90.180.10 6 155 7.4E-44 T 06-07-2017 IPR011032 GroES-like CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 Gene3D G3DSA:3.40.50.720 156 258 1.4E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 SMART SM00829 6 328 6.8E-34 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 SUPERFAMILY SSF51735 123 299 3.43E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23900 d66ed5f30b246a3c2de0b20eb811194c 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 92 1.8E-10 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 SUPERFAMILY SSF55347 132 305 1.06E-30 T 06-07-2017 CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 Gene3D G3DSA:3.30.360.10 137 337 3.5E-44 T 06-07-2017 CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 SUPERFAMILY SSF51735 3 158 1.55E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 119 4.1E-24 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 Gene3D G3DSA:3.40.50.720 1 136 3.5E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27385 b18dfc4bf8dde82d879ac1c738ad5696 339 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 230 4.1E-10 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 SUPERFAMILY SSF54862 34 130 9.63E-21 T 06-07-2017 CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 Pfam PF02754 Cysteine-rich domain 201 288 1.4E-12 T 06-07-2017 IPR004017 Cysteine-rich domain CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 Pfam PF02754 Cysteine-rich domain 333 416 1.2E-13 T 06-07-2017 IPR004017 Cysteine-rich domain CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 Pfam PF12838 4Fe-4S dicluster domain 37 103 1.5E-11 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 Gene3D G3DSA:1.10.1060.10 23 123 2.9E-22 T 06-07-2017 CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS06695 7a922775c4d6bd0928cb5aacf01163f5 443 PIRSF PIRSF000139 18 440 1.3E-139 T 06-07-2017 IPR012257 Glycolate oxidase, iron-sulphur subunit CDO28_RS26370 664ae2703990ab8a019074ca8bc3a3b0 281 Gene3D G3DSA:1.10.3720.10 3 268 7.3E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26370 664ae2703990ab8a019074ca8bc3a3b0 281 SUPERFAMILY SSF161098 4 281 4.39E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26370 664ae2703990ab8a019074ca8bc3a3b0 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 273 2.9E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 SMART SM00893 23 211 2.9E-71 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 06-07-2017 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 SUPERFAMILY SSF52402 1 242 1.4E-87 T 06-07-2017 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 PIRSF PIRSF000090 1 249 1.7E-88 T 06-07-2017 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 4.9E-47 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS24390 71938eba70131f23b34d81ba9ee3e322 249 Gene3D G3DSA:3.40.50.620 1 246 1.1E-106 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS20885 3621936001d4dbd494015029587a1910 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 Gene3D G3DSA:3.40.50.720 2 252 9.8E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20885 3621936001d4dbd494015029587a1910 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 189 5.2E-5 T 06-07-2017 CDO28_RS20885 3621936001d4dbd494015029587a1910 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 4.3E-49 T 06-07-2017 CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.5E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20885 3621936001d4dbd494015029587a1910 252 SUPERFAMILY SSF51735 6 252 2.11E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.30.70.1400 501 576 9.9E-13 T 06-07-2017 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 SUPERFAMILY SSF103025 425 725 8.01E-84 T 06-07-2017 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 710 800 4.1E-19 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:2.40.30.110 723 799 1.9E-22 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 SUPERFAMILY SSF101790 727 814 3.11E-19 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 SUPERFAMILY SSF54373 223 333 7.06E-32 T 06-07-2017 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Pfam PF16350 FAD dependent oxidoreductase central domain 376 430 1.7E-15 T 06-07-2017 IPR032503 FAD dependent oxidoreductase, central domain CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.50.50.60 3 85 1.4E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.50.50.60 144 221 1.4E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.50.50.60 335 392 1.4E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.30.9.10 222 333 1.5E-48 T 06-07-2017 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.30.9.10 90 143 1.5E-48 T 06-07-2017 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Pfam PF01266 FAD dependent oxidoreductase 9 373 2.4E-52 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 SUPERFAMILY SSF51905 335 393 1.49E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 SUPERFAMILY SSF51905 8 222 1.49E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Pfam PF01571 Aminomethyltransferase folate-binding domain 433 702 5.9E-62 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.30.1360.120 587 680 3.0E-34 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS15875 37b882040f4f9ed1ebb7e0df51104fbf 815 Gene3D G3DSA:3.30.1360.120 428 500 3.0E-34 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 SUPERFAMILY SSF52540 33 305 3.08E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 Pfam PF00005 ABC transporter 24 181 6.8E-24 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 Gene3D G3DSA:3.40.50.300 6 261 4.0E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 7.3E-21 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 5.0E-26 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS12255 8144d27aa2771c69391c5f6c258e2ded 337 SMART SM00382 33 231 3.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21450 a4dac7ea781b8ca5a454139e08caa415 487 Gene3D G3DSA:3.40.309.10 273 458 5.4E-70 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS21450 a4dac7ea781b8ca5a454139e08caa415 487 Gene3D G3DSA:3.40.605.10 19 272 2.0E-98 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS21450 a4dac7ea781b8ca5a454139e08caa415 487 Pfam PF00171 Aldehyde dehydrogenase family 29 481 1.3E-168 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS21450 a4dac7ea781b8ca5a454139e08caa415 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS21450 a4dac7ea781b8ca5a454139e08caa415 487 SUPERFAMILY SSF53720 14 486 3.14E-168 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 Gene3D G3DSA:3.30.530.20 164 306 2.3E-35 T 06-07-2017 IPR023393 START-like domain CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 Gene3D G3DSA:3.30.530.20 24 163 2.5E-17 T 06-07-2017 IPR023393 START-like domain CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 SUPERFAMILY SSF55961 22 165 3.06E-20 T 06-07-2017 CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 33 163 1.7E-8 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 175 295 1.0E-16 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS18975 d2c59f9bc2aa5e8da8552d3b2b325cc1 308 SUPERFAMILY SSF55961 165 305 4.08E-33 T 06-07-2017 CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 Pfam PF00924 Mechanosensitive ion channel 497 696 2.5E-39 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 SUPERFAMILY SSF50182 539 601 2.13E-10 T 06-07-2017 IPR010920 LSM domain CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 SUPERFAMILY SSF82689 602 703 1.14E-13 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 Gene3D G3DSA:2.30.30.60 555 600 1.6E-10 T 06-07-2017 CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 SUPERFAMILY SSF82861 470 537 9.55E-12 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDO28_RS26530 b316cdd6780afcf70356026534f68eff 738 Gene3D G3DSA:3.30.70.100 609 694 1.8E-7 T 06-07-2017 CDO28_RS07480 26de902863dc16a927ed0a24473f1e62 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 5 103 1.8E-30 T 06-07-2017 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 CDO28_RS07480 26de902863dc16a927ed0a24473f1e62 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 31.864 T 06-07-2017 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 CDO28_RS07480 26de902863dc16a927ed0a24473f1e62 104 SUPERFAMILY SSF54909 1 103 7.33E-38 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS07480 26de902863dc16a927ed0a24473f1e62 104 Pfam PF05336 Domain of unknown function (DUF718) 3 103 3.3E-27 T 06-07-2017 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Pfam PF00664 ABC transporter transmembrane region 173 439 8.0E-42 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 SUPERFAMILY SSF90123 157 472 3.79E-66 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Pfam PF00005 ABC transporter 502 651 2.1E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 ProSitePatterns PS00211 ABC transporters family signature. 623 637 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Pfam PF03412 Peptidase C39 family 18 105 5.3E-6 T 06-07-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Gene3D G3DSA:1.20.1560.10 156 470 1.2E-73 T 06-07-2017 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 27 724 5.4E-278 T 06-07-2017 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 SUPERFAMILY SSF52540 476 722 7.68E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Gene3D G3DSA:3.90.70.10 24 144 8.8E-20 T 06-07-2017 CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 SMART SM00382 511 704 1.7E-20 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS25745 05d245baf01c7538581047cf9956c966 728 Gene3D G3DSA:3.40.50.300 484 714 1.4E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 Gene3D G3DSA:3.40.50.720 1 239 6.6E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 SUPERFAMILY SSF51735 1 239 9.55E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.2E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.2E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.2E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.2E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 1.2E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22090 db7e5aea687bf16184f7c83741c095c9 239 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 3 239 9.7E-50 T 06-07-2017 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 Gene3D G3DSA:1.10.150.120 74 154 3.1E-32 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 Pfam PF01799 [2Fe-2S] binding domain 72 144 3.7E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 61 4.1E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 Gene3D G3DSA:3.10.20.30 2 73 5.7E-30 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 SUPERFAMILY SSF47741 83 152 1.57E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32605 09d71c6eabc75f038832d35207167f8b 165 SUPERFAMILY SSF54292 2 77 3.54E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS16750 83c7804c5dc8d93cc805acf84d545c8d 242 SUPERFAMILY SSF53335 6 236 2.74E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16750 83c7804c5dc8d93cc805acf84d545c8d 242 Pfam PF08241 Methyltransferase domain 47 141 8.5E-23 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS16750 83c7804c5dc8d93cc805acf84d545c8d 242 Gene3D G3DSA:3.40.50.150 32 218 1.4E-32 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS11000 e33236ba65f3fe5734d5ecac9893ac58 304 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 107 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS11000 e33236ba65f3fe5734d5ecac9893ac58 304 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 223 235 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS11000 e33236ba65f3fe5734d5ecac9893ac58 304 Pfam PF00348 Polyprenyl synthetase 43 264 2.5E-48 T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS11000 e33236ba65f3fe5734d5ecac9893ac58 304 Gene3D G3DSA:1.10.600.10 8 299 2.1E-82 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS11000 e33236ba65f3fe5734d5ecac9893ac58 304 SUPERFAMILY SSF48576 39 289 1.56E-75 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS15920 d4d43ca30534352faadc886054b3bfab 316 Gene3D G3DSA:1.10.3720.10 31 307 4.2E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15920 d4d43ca30534352faadc886054b3bfab 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 308 2.8E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15920 d4d43ca30534352faadc886054b3bfab 316 SUPERFAMILY SSF161098 23 309 2.9E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS05120 60e4725458341e79c7d970567794d954 333 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 64 172 5.3E-19 T 06-07-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CDO28_RS05120 60e4725458341e79c7d970567794d954 333 Gene3D G3DSA:3.20.20.190 11 183 6.6E-37 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS05120 60e4725458341e79c7d970567794d954 333 SUPERFAMILY SSF51695 33 285 3.35E-35 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 SMART SM00382 26 212 1.7E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 Gene3D G3DSA:3.40.50.300 1 237 7.0E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 PIRSF PIRSF039085 1 240 1.5E-104 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 SUPERFAMILY SSF52540 1 235 1.9E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31905 b8d5d4407a63bfff774795d559f6232b 240 Pfam PF00005 ABC transporter 17 165 5.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 Gene3D G3DSA:1.25.40.10 349 553 5.4E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 SMART SM00028 486 519 48.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 SMART SM00028 449 482 150.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 SMART SM00028 415 448 7.6 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 Pfam PF13432 Tetratricopeptide repeat 464 514 1.5E-4 T 06-07-2017 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 SUPERFAMILY SSF48452 348 515 1.42E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 SUPERFAMILY SSF55073 2 170 2.04E-34 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 149 2.8E-5 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS17055 7c28a20e2c57502ac332c9ee76249c27 589 Gene3D G3DSA:3.30.70.1230 6 173 2.1E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1206 1386 4.4E-7 T 06-07-2017 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 230 246 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.10.129.10 1447 1543 5.5E-6 T 06-07-2017 IPR029069 HotDog domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.30.70.250 708 771 9.0E-10 T 06-07-2017 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF51735 1201 1426 1.06E-25 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 604 890 8.7E-27 T 06-07-2017 IPR020801 Polyketide synthase, acyl transferase domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF00698 Acyl transferase domain 640 858 1.0E-27 T 06-07-2017 IPR014043 Acyl transferase CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF52151 773 861 5.75E-40 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF52151 601 710 5.75E-40 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF47336 953 1008 3.84E-6 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SMART SM00825 Beta-ketoacyl synthase 34 489 2.3E-60 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.47.10 329 489 2.2E-46 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 33 316 3.4E-46 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF14765 Polyketide synthase dehydratase 1452 1722 1.7E-38 T 06-07-2017 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SMART SM00826 1449 1607 1.6E-6 T 06-07-2017 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.50.720 1208 1406 3.7E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:1.10.1200.10 954 1007 1.0E-5 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 448 533 2.0E-7 T 06-07-2017 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF08659 KR domain 1209 1384 7.0E-21 T 06-07-2017 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.47.10 34 153 1.2E-54 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.47.10 186 328 1.2E-54 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF55048 710 772 2.09E-8 T 06-07-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 325 436 6.5E-35 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF54637 1448 1549 4.47E-5 T 06-07-2017 IPR029069 HotDog domain CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.366.10 772 861 9.6E-39 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 Gene3D G3DSA:3.40.366.10 640 704 9.6E-39 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF53901 32 149 8.1E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS20135 6529151fa41dac99bb2f046a7090f9b9 1911 SUPERFAMILY SSF53901 213 433 8.1E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 Gene3D G3DSA:3.40.190.80 180 267 7.2E-18 T 06-07-2017 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 Gene3D G3DSA:3.30.540.10 12 160 6.6E-39 T 06-07-2017 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 SUPERFAMILY SSF56655 12 265 7.59E-64 T 06-07-2017 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 215 229 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 48 68 3.4E-6 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 70 86 3.4E-6 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 3.4E-6 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS06550 63065286b53e6195c6db9e393ba433df 272 Pfam PF00459 Inositol monophosphatase family 17 247 2.3E-40 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 127 3.7E-17 T 06-07-2017 IPR000014 PAS domain CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 248 5.8E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Gene3D G3DSA:3.30.450.20 141 245 4.8E-23 T 06-07-2017 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Gene3D G3DSA:3.30.450.20 20 123 2.6E-23 T 06-07-2017 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SMART SM00086 204 246 1.3E-4 T 06-07-2017 IPR001610 PAC motif CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SMART SM00086 83 124 0.0016 T 06-07-2017 IPR001610 PAC motif CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 365 543 1.5E-56 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SUPERFAMILY SSF55785 141 246 1.06E-23 T 06-07-2017 IPR000014 PAS domain CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SUPERFAMILY SSF55785 20 125 7.5E-25 T 06-07-2017 IPR000014 PAS domain CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Gene3D G3DSA:1.10.287.950 312 516 2.5E-56 T 06-07-2017 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SUPERFAMILY SSF58104 264 545 3.27E-66 T 06-07-2017 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SMART SM00283 297 544 5.9E-99 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Pfam PF08447 PAS fold 154 239 3.4E-14 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 Pfam PF08447 PAS fold 33 117 3.3E-13 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SMART SM00091 133 199 170.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS12040 e2a97c674a57b5ba2efab902b5218fd4 593 SMART SM00091 8 78 2.0E-4 T 06-07-2017 IPR000014 PAS domain CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 109 125 1.5E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 89 1.5E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 105 1.5E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 139 159 1.5E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 SMART SM00347 46 149 1.1E-25 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 Pfam PF12802 MarR family 51 113 1.1E-13 T 06-07-2017 CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 Gene3D G3DSA:1.10.10.10 12 163 3.8E-40 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 ProSitePatterns PS01117 MarR-type HTH domain signature. 88 122 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS09060 d555b0930b4bd25a3d51334aad04614a 164 SUPERFAMILY SSF46785 14 163 1.53E-35 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05935 780fc7950f304035f661407be890d02f 376 Gene3D G3DSA:3.40.50.150 18 269 7.7E-78 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05935 780fc7950f304035f661407be890d02f 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 39 53 2.9E-41 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 88 108 2.9E-41 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 223 241 2.9E-41 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 204 221 2.9E-41 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 246 266 2.9E-41 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 43 49 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 Pfam PF01555 DNA methylase 40 262 3.1E-57 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CDO28_RS05935 780fc7950f304035f661407be890d02f 376 SUPERFAMILY SSF53335 18 267 2.51E-73 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 374 491 4.5E-24 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 SUPERFAMILY SSF53756 6 355 3.18E-63 T 06-07-2017 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Pfam PF00534 Glycosyl transferases group 1 178 334 8.5E-35 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 SUPERFAMILY SSF51735 371 506 7.76E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Gene3D G3DSA:3.30.360.10 502 690 1.4E-30 T 06-07-2017 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Gene3D G3DSA:3.40.50.720 884 1007 4.8E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Gene3D G3DSA:3.40.50.2000 152 334 9.0E-30 T 06-07-2017 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 SUPERFAMILY SSF50129 719 851 6.6E-6 T 06-07-2017 IPR011032 GroES-like CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 SUPERFAMILY SSF51735 883 1014 3.62E-17 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 522 605 1.8E-6 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 SUPERFAMILY SSF55347 517 657 3.6E-17 T 06-07-2017 CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Gene3D G3DSA:3.40.50.720 370 501 1.3E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21860 06ded6cb5d4dfe9ee9637c9d03e19fb9 1080 Pfam PF00107 Zinc-binding dehydrogenase 896 986 3.8E-9 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS13350 1c2a5c3e3a77a30c5c9593e4a0786f7c 277 Gene3D G3DSA:3.60.15.10 58 236 4.2E-32 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS13350 1c2a5c3e3a77a30c5c9593e4a0786f7c 277 Pfam PF13483 Beta-lactamase superfamily domain 68 233 5.7E-48 T 06-07-2017 CDO28_RS13350 1c2a5c3e3a77a30c5c9593e4a0786f7c 277 SUPERFAMILY SSF56281 67 240 2.11E-12 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS32870 48a572295e5e879b50d796f6f725ce1f 161 PIRSF PIRSF021700 1 157 5.4E-65 T 06-07-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase CDO28_RS32870 48a572295e5e879b50d796f6f725ce1f 161 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 118 8.2E-49 T 06-07-2017 IPR028973 PhnB-like CDO28_RS32870 48a572295e5e879b50d796f6f725ce1f 161 SUPERFAMILY SSF54593 3 155 1.79E-47 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS32870 48a572295e5e879b50d796f6f725ce1f 161 Gene3D G3DSA:3.10.180.10 1 127 1.5E-42 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS25050 535badacd560179c5c5c098413b5edf1 186 SUPERFAMILY SSF55729 103 170 1.68E-17 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25050 535badacd560179c5c5c098413b5edf1 186 Gene3D G3DSA:3.40.630.30 4 184 2.4E-33 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25050 535badacd560179c5c5c098413b5edf1 186 Pfam PF13673 Acetyltransferase (GNAT) domain 111 183 3.4E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS20065 733390daebc46539fb93e4a9c480dbd5 376 SUPERFAMILY SSF111369 19 272 2.22E-13 T 06-07-2017 CDO28_RS20065 733390daebc46539fb93e4a9c480dbd5 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 3 349 6.3E-41 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS20065 733390daebc46539fb93e4a9c480dbd5 376 Gene3D G3DSA:2.40.50.100 165 194 4.2E-9 T 06-07-2017 CDO28_RS20065 733390daebc46539fb93e4a9c480dbd5 376 Gene3D G3DSA:2.40.50.100 29 62 4.2E-9 T 06-07-2017 CDO28_RS20065 733390daebc46539fb93e4a9c480dbd5 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 27 270 9.4E-20 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 1.2E-10 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 SUPERFAMILY SSF53822 78 324 2.19E-45 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 Gene3D G3DSA:3.40.50.2300 181 319 1.2E-31 T 06-07-2017 CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 SMART SM00354 3 76 5.8E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 83 279 7.1E-22 T 06-07-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 Gene3D G3DSA:3.40.50.2300 54 180 4.6E-23 T 06-07-2017 CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 SUPERFAMILY SSF47413 2 61 8.25E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28210 a9e62ee75f294bb840c178f6c72eade1 344 Gene3D G3DSA:1.10.260.40 2 53 1.4E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS19195 934d65962ea09421c6fc8cd1a4f7e258 269 Pfam PF04072 Leucine carboxyl methyltransferase 50 175 1.4E-17 T 06-07-2017 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 CDO28_RS19195 934d65962ea09421c6fc8cd1a4f7e258 269 SUPERFAMILY SSF53335 13 233 6.37E-56 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS19195 934d65962ea09421c6fc8cd1a4f7e258 269 PIRSF PIRSF028177 1 269 1.0E-92 T 06-07-2017 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 CDO28_RS19195 934d65962ea09421c6fc8cd1a4f7e258 269 Gene3D G3DSA:3.40.50.150 9 243 9.8E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 Pfam PF02545 Maf-like protein 5 193 2.7E-40 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 SUPERFAMILY SSF52972 2 193 1.57E-48 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 192 5.0E-37 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 PIRSF PIRSF006305 1 198 6.4E-40 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 Gene3D G3DSA:3.90.950.10 4 195 1.8E-49 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS10625 be9d9ec0248aaee7e79969695e7ac4f3 199 Hamap MF_00528 Septum formation protein Maf [maf]. 4 198 26.78 T 06-07-2017 IPR003697 Maf-like protein GO:0005737 CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.6E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.6E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 3.6E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 3.6E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 PIRSF PIRSF000094 5 263 3.6E-113 T 06-07-2017 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 4.1E-91 T 06-07-2017 CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 Gene3D G3DSA:3.40.50.720 10 204 8.5E-69 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06085 70088f45b5125dd9ad91b89dfda74e73 272 SUPERFAMILY SSF51735 9 258 1.06E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 SMART SM00866 87 224 7.8E-23 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 Gene3D G3DSA:3.40.1410.10 84 220 1.4E-34 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 2 231 4.4E-84 T 06-07-2017 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 SUPERFAMILY SSF64288 54 229 7.85E-32 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 Gene3D G3DSA:1.10.10.10 2 72 4.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.7E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.7E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 SUPERFAMILY SSF46785 2 76 1.21E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 SMART SM00345 7 66 7.2E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 Pfam PF07702 UTRA domain 88 223 4.7E-27 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS30835 cee6af77f659cce584cf8a113a816af4 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 66 8.3E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 252 849 1.2E-204 T 06-07-2017 IPR014143 DNA ligase D CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 577 822 1.6E-95 T 06-07-2017 IPR014145 DNA ligase D, polymerase domain CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 243 540 2.9E-98 T 06-07-2017 IPR014146 DNA ligase D, ligase domain CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Pfam PF04679 ATP dependent DNA ligase C terminal region 441 534 9.0E-23 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Gene3D G3DSA:3.30.470.30 266 370 1.3E-26 T 06-07-2017 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 SUPERFAMILY SSF50249 426 539 2.11E-24 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 SUPERFAMILY SSF56091 232 423 2.13E-46 T 06-07-2017 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Pfam PF01068 ATP dependent DNA ligase domain 248 422 1.1E-24 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 8 165 2.0E-74 T 06-07-2017 IPR014144 DNA ligase D, 3'-phosphoesterase domain CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Gene3D G3DSA:2.40.50.140 425 541 5.6E-40 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Pfam PF13298 DNA polymerase Ligase (LigD) 41 145 6.3E-40 T 06-07-2017 IPR014144 DNA ligase D, 3'-phosphoesterase domain CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Gene3D G3DSA:3.30.1490.70 380 423 3.1E-18 T 06-07-2017 CDO28_RS13405 630cd73b75f8a1902fa780657be26bd9 865 Gene3D G3DSA:3.30.1490.70 237 265 3.1E-18 T 06-07-2017 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Gene3D G3DSA:3.90.740.10 215 425 5.8E-40 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 SUPERFAMILY SSF47323 693 964 7.66E-58 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 64 75 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 21 875 4.5E-238 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 SUPERFAMILY SSF50677 213 439 2.62E-35 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 SUPERFAMILY SSF52374 439 686 1.88E-133 T 06-07-2017 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 SUPERFAMILY SSF52374 8 211 1.88E-133 T 06-07-2017 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 8 963 19.345 T 06-07-2017 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 568 581 4.1E-22 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 57 68 4.1E-22 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 4.1E-22 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 602 611 4.1E-22 T 06-07-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Pfam PF08264 Anticodon-binding domain of tRNA 725 874 2.3E-23 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Gene3D G3DSA:3.40.50.620 442 678 2.2E-137 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Gene3D G3DSA:3.40.50.620 19 209 2.2E-137 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Gene3D G3DSA:1.10.730.10 684 860 2.7E-38 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS06605 3d7d599ab1f83d129acf496e78053280 969 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 35 680 2.4E-181 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS27830 f4b4adba3ff8b5bf7c0cc2153278b4e3 73 Pfam PF00403 Heavy-metal-associated domain 4 61 3.6E-14 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27830 f4b4adba3ff8b5bf7c0cc2153278b4e3 73 SUPERFAMILY SSF55008 2 63 1.2E-17 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS27830 f4b4adba3ff8b5bf7c0cc2153278b4e3 73 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS27830 f4b4adba3ff8b5bf7c0cc2153278b4e3 73 Gene3D G3DSA:3.30.70.100 2 63 3.1E-21 T 06-07-2017 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 Gene3D G3DSA:2.40.37.10 270 421 4.8E-45 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 1.5E-26 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 383 405 1.5E-26 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 1.5E-26 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 1.5E-26 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 SUPERFAMILY SSF50621 256 418 1.23E-50 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 SUPERFAMILY SSF51419 26 284 1.7E-81 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 287 392 6.6E-13 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 416 40.114 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 06-07-2017 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 38 282 7.6E-64 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 1.3E-25 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.3E-25 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.3E-25 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 373 386 1.3E-25 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.3E-25 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 226 241 - T 06-07-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 Gene3D G3DSA:3.20.20.10 36 269 4.9E-82 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS13885 3e6247b4f93eab0cf436063f22f43885 422 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 414 9.9E-145 T 06-07-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS21315 582ddfbedd800f99549e3aeab0edaee6 245 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS21315 582ddfbedd800f99549e3aeab0edaee6 245 SMART SM00382 31 232 5.1E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21315 582ddfbedd800f99549e3aeab0edaee6 245 Pfam PF00005 ABC transporter 22 175 1.5E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21315 582ddfbedd800f99549e3aeab0edaee6 245 SUPERFAMILY SSF52540 6 228 8.04E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21315 582ddfbedd800f99549e3aeab0edaee6 245 Gene3D G3DSA:3.40.50.300 4 241 6.3E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 Gene3D G3DSA:3.90.1150.10 338 465 1.9E-46 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 Pfam PF00202 Aminotransferase class-III 48 461 1.8E-93 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 30 458 2.2E-162 T 06-07-2017 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761 CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 Gene3D G3DSA:3.40.640.10 86 337 2.3E-67 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 SUPERFAMILY SSF53383 38 464 2.36E-122 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS20475 a101ecc6120d872efc3031e0dbde91a7 470 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 272 309 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS21430 116c451ba6f1b7d789534f9e1dce7e0a 325 Pfam PF00929 Exonuclease 71 225 1.0E-15 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III CDO28_RS21430 116c451ba6f1b7d789534f9e1dce7e0a 325 Gene3D G3DSA:3.30.420.10 68 227 2.2E-25 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS21430 116c451ba6f1b7d789534f9e1dce7e0a 325 SUPERFAMILY SSF53098 67 232 1.1E-33 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS21430 116c451ba6f1b7d789534f9e1dce7e0a 325 SMART SM00479 69 234 2.1E-9 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 Pfam PF12860 PAS fold 428 544 5.7E-21 T 06-07-2017 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 SMART SM00044 547 750 9.7E-9 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 SUPERFAMILY SSF158472 360 408 9.81E-7 T 06-07-2017 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 585 766 4.0E-30 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 SMART SM00304 359 411 3.6E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 Gene3D G3DSA:3.30.450.20 417 538 1.1E-8 T 06-07-2017 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 SUPERFAMILY SSF55073 581 769 7.69E-54 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 Pfam PF00672 HAMP domain 339 406 1.6E-11 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS21955 5921b5b35ee2a3fb91d3aba10a11ae98 819 Gene3D G3DSA:3.30.70.1230 583 769 2.1E-45 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 SMART SM00342 201 283 2.3E-32 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 SUPERFAMILY SSF46689 186 235 2.65E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 SUPERFAMILY SSF51215 41 167 2.22E-18 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 Pfam PF12833 Helix-turn-helix domain 207 284 3.4E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 SUPERFAMILY SSF46689 238 284 1.34E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 Gene3D G3DSA:1.10.10.60 180 238 1.9E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 Pfam PF02311 AraC-like ligand binding domain 31 163 2.2E-29 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 Gene3D G3DSA:2.60.120.280 41 117 3.6E-10 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS04865 8ecd2c9a75067167bb680fba6d4839f0 285 Gene3D G3DSA:1.10.10.60 239 284 6.3E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 2.1E-5 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 2.1E-5 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 2.1E-5 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 SMART SM00418 9 84 2.9E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 Pfam PF12840 Helix-turn-helix domain 8 68 7.2E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 Gene3D G3DSA:1.10.10.10 3 107 2.6E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05090 f0a9ff4c2518a6b3c71402404d8198b2 110 SUPERFAMILY SSF46785 6 104 2.38E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09605 8d5512121ff2eaa3e456afec163d6749 294 SUPERFAMILY SSF53067 1 110 6.8E-22 T 06-07-2017 CDO28_RS09605 8d5512121ff2eaa3e456afec163d6749 294 Gene3D G3DSA:3.30.420.40 4 69 9.3E-7 T 06-07-2017 CDO28_RS09605 8d5512121ff2eaa3e456afec163d6749 294 SUPERFAMILY SSF53067 114 282 1.39E-40 T 06-07-2017 CDO28_RS09605 8d5512121ff2eaa3e456afec163d6749 294 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 280 6.5E-32 T 06-07-2017 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 SUPERFAMILY SSF52172 1 148 2.99E-32 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 Gene3D G3DSA:1.10.10.10 143 200 6.1E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 Pfam PF00072 Response regulator receiver domain 6 116 9.0E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 1.5E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 SUPERFAMILY SSF46894 133 201 3.4E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 SMART SM00448 4 115 7.3E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 SMART SM00421 139 196 2.9E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 Gene3D G3DSA:3.40.50.2300 3 142 9.2E-31 T 06-07-2017 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22560 3c28430df6fa6212d4ca679a5bb459a2 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 SUPERFAMILY SSF52172 1 148 2.99E-32 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 Gene3D G3DSA:1.10.10.10 143 200 6.1E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 Pfam PF00072 Response regulator receiver domain 6 116 9.0E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 1.5E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 SUPERFAMILY SSF46894 133 201 3.4E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 SMART SM00448 4 115 7.3E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 SMART SM00421 139 196 2.9E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 Gene3D G3DSA:3.40.50.2300 3 142 9.2E-31 T 06-07-2017 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 1.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22745 3c28430df6fa6212d4ca679a5bb459a2 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS05080 139d93f88d14a44bffe69b3a16db6ab1 120 Gene3D G3DSA:3.10.180.10 14 103 2.1E-5 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05080 139d93f88d14a44bffe69b3a16db6ab1 120 SUPERFAMILY SSF54593 16 117 8.03E-9 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS06435 8c9274f69072f19d12db48ae814f2fd2 326 SUPERFAMILY SSF143865 1 265 2.75E-34 T 06-07-2017 CDO28_RS06435 8c9274f69072f19d12db48ae814f2fd2 326 SUPERFAMILY SSF144083 261 324 1.7E-20 T 06-07-2017 CDO28_RS06435 8c9274f69072f19d12db48ae814f2fd2 326 Pfam PF01544 CorA-like Mg2+ transporter protein 26 321 4.5E-53 T 06-07-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDO28_RS06435 8c9274f69072f19d12db48ae814f2fd2 326 Gene3D G3DSA:1.20.58.340 250 326 9.8E-28 T 06-07-2017 CDO28_RS06435 8c9274f69072f19d12db48ae814f2fd2 326 Gene3D G3DSA:1.20.58.340 132 239 2.0E-4 T 06-07-2017 CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 Gene3D G3DSA:3.90.230.10 5 247 4.3E-66 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 31.931 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 246 6.3E-71 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 4.5E-17 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 158 170 4.5E-17 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 4.5E-17 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 88 104 4.5E-17 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 SUPERFAMILY SSF55920 3 247 7.2E-65 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS28400 2630fd1fd65f2b5794bc6bd05cde4134 249 Pfam PF00557 Metallopeptidase family M24 11 238 1.2E-42 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS33420 806197aba6cb82339b10ad7fadf0d8d7 409 SUPERFAMILY SSF53756 20 394 1.38E-51 T 06-07-2017 CDO28_RS33420 806197aba6cb82339b10ad7fadf0d8d7 409 Pfam PF13579 Glycosyl transferase 4-like domain 20 188 3.0E-14 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS33420 806197aba6cb82339b10ad7fadf0d8d7 409 Gene3D G3DSA:3.40.50.2000 182 296 4.5E-9 T 06-07-2017 CDO28_RS33420 806197aba6cb82339b10ad7fadf0d8d7 409 Pfam PF13692 Glycosyl transferases group 1 212 358 3.9E-18 T 06-07-2017 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 Pfam PF10282 Lactonase, 7-bladed beta-propeller 180 304 7.4E-5 T 06-07-2017 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 Pfam PF10282 Lactonase, 7-bladed beta-propeller 20 80 8.7E-5 T 06-07-2017 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 SUPERFAMILY SSF50974 6 323 9.68E-80 T 06-07-2017 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 Gene3D G3DSA:2.130.10.10 15 323 5.0E-69 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 SMART SM00320 250 300 170.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 SMART SM00320 41 80 0.041 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 13 323 1.4E-160 T 06-07-2017 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 103 144 1.8E-15 T 06-07-2017 IPR011964 YVTN beta-propeller repeat CDO28_RS31505 b25f731e5750d593dc5c4c4504566f9e 324 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 288 321 9.8E-12 T 06-07-2017 IPR011964 YVTN beta-propeller repeat CDO28_RS33850 e13c1fd6b9f78a9848c300d32b019ce0 315 SUPERFAMILY SSF100950 69 311 4.95E-65 T 06-07-2017 CDO28_RS33850 e13c1fd6b9f78a9848c300d32b019ce0 315 Gene3D G3DSA:3.40.50.1360 63 314 7.6E-72 T 06-07-2017 CDO28_RS33850 e13c1fd6b9f78a9848c300d32b019ce0 315 Pfam PF04198 Putative sugar-binding domain 66 311 1.9E-67 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS33850 e13c1fd6b9f78a9848c300d32b019ce0 315 Gene3D G3DSA:1.10.10.10 29 62 9.1E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31740 f779a4e8c2568ab92e34eb6ec85cf81d 282 SUPERFAMILY SSF161098 19 282 3.36E-70 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31740 f779a4e8c2568ab92e34eb6ec85cf81d 282 Gene3D G3DSA:1.10.3720.10 18 270 4.8E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31740 f779a4e8c2568ab92e34eb6ec85cf81d 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 272 6.5E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS01605 c373fa4ae852971d281ff92fab3d423d 189 Gene3D G3DSA:3.20.20.150 51 129 3.5E-4 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 SUPERFAMILY SSF46689 388 439 4.66E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Gene3D G3DSA:3.40.50.300 143 316 8.2E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Pfam PF00158 Sigma-54 interaction domain 147 311 2.7E-60 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Gene3D G3DSA:1.10.8.60 318 367 1.7E-16 T 06-07-2017 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 SMART SM00448 4 115 7.7E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 SUPERFAMILY SSF52540 146 374 2.21E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 SMART SM00382 165 308 6.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Pfam PF02954 Bacterial regulatory protein, Fis family 396 436 2.6E-8 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Gene3D G3DSA:1.10.10.60 368 439 4.7E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Pfam PF00072 Response regulator receiver domain 6 113 4.5E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 Gene3D G3DSA:3.40.50.2300 2 123 3.0E-37 T 06-07-2017 CDO28_RS27060 352996c6e6da9fa83ad2c8e7cf76d520 447 SUPERFAMILY SSF52172 1 190 1.21E-44 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS31450 6d74cd4a30dc1b26b561ee80497b28c4 365 TIGRFAM TIGR04559 SoxH_rel_PQQ_2: quinoprotein relay system zinc metallohydrolase 2 82 364 5.3E-115 T 06-07-2017 IPR030829 Quinoprotein relay system zinc metallohydrolase 2 CDO28_RS31450 6d74cd4a30dc1b26b561ee80497b28c4 365 SMART SM00849 109 293 2.1E-23 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31450 6d74cd4a30dc1b26b561ee80497b28c4 365 SUPERFAMILY SSF56281 80 348 5.46E-53 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31450 6d74cd4a30dc1b26b561ee80497b28c4 365 Pfam PF00753 Metallo-beta-lactamase superfamily 106 293 4.1E-21 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31450 6d74cd4a30dc1b26b561ee80497b28c4 365 Gene3D G3DSA:3.60.15.10 78 319 1.1E-45 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 SUPERFAMILY SSF55846 11 169 6.94E-54 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 SMART SM00644 16 153 2.3E-34 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 Gene3D G3DSA:3.40.80.10 7 172 3.6E-56 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 26 153 5.6E-25 T 06-07-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 Pfam PF01471 Putative peptidoglycan binding domain 186 242 5.2E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 SUPERFAMILY SSF47090 181 246 1.65E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16330 aa2ad73677ded7e75bff2aac5a66669a 254 Gene3D G3DSA:1.10.101.10 177 244 1.7E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 308 2.6E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 SUPERFAMILY SSF47384 229 309 1.12E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 Gene3D G3DSA:3.30.450.20 140 243 3.6E-8 T 06-07-2017 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 SUPERFAMILY SSF55874 297 464 1.57E-45 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 SMART SM00387 354 466 3.5E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 Gene3D G3DSA:3.30.565.10 309 466 1.2E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 SMART SM00388 239 308 1.0E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 464 3.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 Gene3D G3DSA:1.10.287.130 244 304 3.4E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 463 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05525 7c111bd0f0f66b4b43b407319e834132 525 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 2.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 Gene3D G3DSA:3.40.190.10 177 266 3.2E-20 T 06-07-2017 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 Pfam PF03466 LysR substrate binding domain 90 293 6.6E-35 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 Gene3D G3DSA:1.10.10.10 2 81 4.5E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 Gene3D G3DSA:3.40.190.10 92 176 4.0E-24 T 06-07-2017 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.0E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 SUPERFAMILY SSF46785 4 89 1.03E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22385 1a05c51d51ae4e114c1bb01a5bd0de7b 305 SUPERFAMILY SSF53850 90 296 2.95E-34 T 06-07-2017 CDO28_RS02575 59d33b6e6875263aa06f93570f642d79 745 Pfam PF00665 Integrase core domain 299 443 1.5E-7 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS02575 59d33b6e6875263aa06f93570f642d79 745 SUPERFAMILY SSF53098 335 504 5.61E-11 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS02575 59d33b6e6875263aa06f93570f642d79 745 Gene3D G3DSA:3.30.420.10 298 502 5.9E-17 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS26950 7a9fc0246254a5d71b577b7a3fe26e74 320 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 27 310 1.1E-76 T 06-07-2017 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 CDO28_RS26950 7a9fc0246254a5d71b577b7a3fe26e74 320 Gene3D G3DSA:1.10.3720.10 111 310 1.1E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26950 7a9fc0246254a5d71b577b7a3fe26e74 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 139 310 1.3E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26950 7a9fc0246254a5d71b577b7a3fe26e74 320 SUPERFAMILY SSF161098 115 300 2.22E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 4.2E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 4.2E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 SUPERFAMILY SSF64288 65 243 5.71E-37 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 7 243 1.0E-87 T 06-07-2017 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 SMART SM00345 18 77 9.8E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 Gene3D G3DSA:3.40.1410.10 85 243 5.1E-40 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 SMART SM00866 99 239 2.6E-29 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 SUPERFAMILY SSF46785 11 83 3.01E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 3.8E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 Pfam PF07702 UTRA domain 100 239 6.9E-32 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS30015 1c761f0591bfad6deb77215ceb0706c5 244 Gene3D G3DSA:1.10.10.10 11 81 3.1E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 SUPERFAMILY SSF52402 8 171 4.19E-51 T 06-07-2017 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 Gene3D G3DSA:3.90.1260.10 165 362 1.4E-87 T 06-07-2017 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 Gene3D G3DSA:1.20.5.470 376 399 3.1E-7 T 06-07-2017 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 9 401 2.3E-141 T 06-07-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 Pfam PF00764 Arginosuccinate synthase 11 399 3.1E-153 T 06-07-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 SUPERFAMILY SSF69864 180 403 2.75E-88 T 06-07-2017 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 7 405 52.633 T 06-07-2017 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 Gene3D G3DSA:3.40.50.620 8 164 7.3E-69 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 121 132 - T 06-07-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS11295 493bc11f5c05dcb6ecd63eb45769851a 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 13 21 - T 06-07-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS22220 f251bed318e553140ffe4dd028f2bc21 293 SUPERFAMILY SSF88713 17 287 1.38E-47 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS22220 f251bed318e553140ffe4dd028f2bc21 293 Gene3D G3DSA:3.20.20.370 17 287 1.8E-50 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS22220 f251bed318e553140ffe4dd028f2bc21 293 Pfam PF04794 YdjC-like protein 17 275 2.6E-42 T 06-07-2017 IPR006879 Chitooligosaccharide deacetylase ChbG-like CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 SUPERFAMILY SSF54752 280 337 6.41E-22 T 06-07-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 Gene3D G3DSA:3.30.250.10 280 337 5.0E-28 T 06-07-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 SUPERFAMILY SSF52540 18 279 7.84E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 Pfam PF00154 recA bacterial DNA recombination protein 18 280 6.4E-148 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 Gene3D G3DSA:3.40.50.300 47 279 5.4E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 SMART SM00382 69 240 1.5E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 Hamap MF_00268 Protein RecA [recA]. 16 341 52.017 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 15 335 1.9E-174 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 ProSitePatterns PS00321 recA signature. 225 233 - T 06-07-2017 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 177 206 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 139 168 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 255 284 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 309 326 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 105 134 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS00270 ad8842d114340dbcfc6346400dd7ad46 361 PRINTS PR00142 RecA protein signature 222 250 1.3E-85 T 06-07-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 Gene3D G3DSA:3.30.230.40 8 94 2.1E-38 T 06-07-2017 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 SUPERFAMILY SSF54211 8 92 4.05E-34 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 06-07-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 1.4E-63 T 06-07-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 SUPERFAMILY SSF54211 94 184 7.71E-33 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 Gene3D G3DSA:3.30.230.40 96 201 1.6E-31 T 06-07-2017 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 06-07-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDO28_RS10360 6a337fbe8934e536f80263681d0fc485 202 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 42.734 T 06-07-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDO28_RS27180 f9d4f135523914046e6d8850e3dfdbf1 749 SUPERFAMILY SSF53448 460 721 1.07E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27180 f9d4f135523914046e6d8850e3dfdbf1 749 Pfam PF00535 Glycosyl transferase family 2 467 648 3.9E-14 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS27180 f9d4f135523914046e6d8850e3dfdbf1 749 Gene3D G3DSA:3.90.550.10 464 698 1.0E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS05010 a18654f9bf28bd22511e2b25b10134a1 165 Pfam PF02794 RTX toxin acyltransferase family 15 142 2.3E-33 T 06-07-2017 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 PIRSF PIRSF005962 5 389 1.9E-116 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 Pfam PF01546 Peptidase family M20/M25/M40 73 384 3.7E-35 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 372 3.2E-99 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 Pfam PF07687 Peptidase dimerisation domain 185 274 2.2E-7 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS26660 41b45d70291279112005bae6442300b3 389 Gene3D G3DSA:3.30.70.360 181 299 5.0E-34 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS26660 41b45d70291279112005bae6442300b3 389 Gene3D G3DSA:3.40.630.10 12 178 2.7E-92 T 06-07-2017 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 Gene3D G3DSA:3.40.630.10 300 387 2.7E-92 T 06-07-2017 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 SUPERFAMILY SSF53187 300 387 3.11E-80 T 06-07-2017 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 SUPERFAMILY SSF53187 7 197 3.11E-80 T 06-07-2017 CDO28_RS26660 41b45d70291279112005bae6442300b3 389 SUPERFAMILY SSF55031 183 298 2.39E-26 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 112 128 - T 06-07-2017 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 SMART SM00859 4 106 8.0E-11 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 SUPERFAMILY SSF55347 117 291 2.29E-32 T 06-07-2017 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 43 101 1.9E-7 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 310 54.691 T 06-07-2017 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 Gene3D G3DSA:3.40.50.720 44 125 1.3E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 2 308 2.5E-130 T 06-07-2017 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 SUPERFAMILY SSF51735 1 136 6.31E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04280 94534217f7fd44a2d343f216f67bffde 310 Gene3D G3DSA:3.30.360.10 126 291 1.5E-33 T 06-07-2017 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 461 1.0E-18 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SUPERFAMILY SSF47384 223 305 1.45E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SUPERFAMILY SSF55874 294 462 7.6E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SMART SM00387 350 464 5.8E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 305 1.2E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 Pfam PF00672 HAMP domain 167 235 1.2E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 1.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 1.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 1.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SMART SM00304 186 239 8.4E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 Gene3D G3DSA:1.10.287.130 230 301 1.2E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SMART SM00388 240 305 2.4E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 Gene3D G3DSA:3.30.565.10 309 462 8.0E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05405 7414ec9aaa87f183a5522f460a418f5b 465 SUPERFAMILY SSF158472 188 236 5.23E-8 T 06-07-2017 CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Gene3D G3DSA:3.90.550.10 3 252 8.4E-58 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 272 301 5.3E-4 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 7 432 3.0E-140 T 06-07-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 SUPERFAMILY SSF51161 250 431 2.83E-45 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 SUPERFAMILY SSF53448 6 254 6.31E-57 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 388 416 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Pfam PF12804 MobA-like NTP transferase domain 7 143 5.8E-23 T 06-07-2017 IPR025877 MobA-like NTP transferase CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 380 414 3.0E-9 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Gene3D G3DSA:2.160.10.10 258 424 4.7E-39 T 06-07-2017 CDO28_RS01070 53a8cf8f493e7c5f7c8f3bbbd346dab2 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 4 437 36.726 T 06-07-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Gene3D G3DSA:3.30.70.360 195 287 1.2E-27 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Gene3D G3DSA:3.40.630.10 6 194 2.4E-73 T 06-07-2017 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Gene3D G3DSA:3.40.630.10 335 393 2.4E-73 T 06-07-2017 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 SUPERFAMILY SSF53187 5 185 1.57E-63 T 06-07-2017 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 SUPERFAMILY SSF53187 311 392 1.57E-63 T 06-07-2017 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Pfam PF07687 Peptidase dimerisation domain 182 287 1.5E-25 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Pfam PF01546 Peptidase family M20/M25/M40 69 389 2.7E-45 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 10 390 1.7E-124 T 06-07-2017 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 104 142 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 SUPERFAMILY SSF55031 186 288 7.33E-26 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 68 77 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS08420 c570b07fafe078dc2c39662f96739dcc 397 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 393 48.71 T 06-07-2017 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 131 218 1.0E-44 T 06-07-2017 CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 SUPERFAMILY SSF57863 87 182 2.22E-13 T 06-07-2017 CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 SUPERFAMILY SSF50249 1 67 2.57E-7 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 Pfam PF11967 Recombination protein O N terminal 1 70 7.3E-16 T 06-07-2017 IPR022572 DNA replication/recombination mediator RecO, N-terminal CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 Hamap MF_00201 DNA repair protein RecO [recO]. 1 236 17.241 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 TIGRFAM TIGR00613 reco: DNA repair protein RecO 4 221 5.5E-41 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CDO28_RS05070 2965fff29b3416d73819657d03cceb8a 247 Pfam PF02565 Recombination protein O C terminal 88 221 3.8E-27 T 06-07-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CDO28_RS33580 abf0691b1e0d3215f8c69f1a28adfabc 368 Gene3D G3DSA:3.40.640.10 13 243 2.0E-88 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS33580 abf0691b1e0d3215f8c69f1a28adfabc 368 SUPERFAMILY SSF53383 10 363 5.44E-118 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS33580 abf0691b1e0d3215f8c69f1a28adfabc 368 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 15 361 1.6E-128 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS33580 abf0691b1e0d3215f8c69f1a28adfabc 368 Gene3D G3DSA:3.90.1150.10 245 363 2.3E-37 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS33580 abf0691b1e0d3215f8c69f1a28adfabc 368 PIRSF PIRSF000390 3 367 3.4E-116 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS09820 9a146bdfb33d99dbbc6163b0852742bc 377 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 21 58 2.0E-6 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS09820 9a146bdfb33d99dbbc6163b0852742bc 377 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 193 374 5.6E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09820 9a146bdfb33d99dbbc6163b0852742bc 377 Gene3D G3DSA:1.10.3720.10 169 372 2.0E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09820 9a146bdfb33d99dbbc6163b0852742bc 377 SUPERFAMILY SSF161098 171 357 2.09E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11240 866aa73769dce35120f2802bf6d39c58 213 SUPERFAMILY SSF52266 26 200 6.11E-47 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS11240 866aa73769dce35120f2802bf6d39c58 213 Gene3D G3DSA:3.40.50.1110 28 201 1.8E-47 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS11240 866aa73769dce35120f2802bf6d39c58 213 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 190 9.0E-23 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 55 63 8.0E-17 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 100 115 8.0E-17 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 136 152 8.0E-17 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 ProSitePatterns PS00855 Signal peptidases II signature. 103 115 - T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 10 161 15.702 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 TIGRFAM TIGR00077 lspA: signal peptidase II 10 161 1.4E-38 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS08585 e4be8de5a41edab84a56890cd9afc3f0 166 Pfam PF01252 Signal peptidase (SPase) II 18 154 1.5E-31 T 06-07-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Gene3D G3DSA:1.10.150.20 246 327 2.6E-37 T 06-07-2017 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 SUPERFAMILY SSF55257 6 54 4.71E-30 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 SUPERFAMILY SSF55257 176 230 4.71E-30 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 250 307 4.7E-25 T 06-07-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 SMART SM00662 24 231 7.6E-103 T 06-07-2017 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 SUPERFAMILY SSF56553 54 175 6.67E-45 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Gene3D G3DSA:3.30.1360.10 10 67 4.3E-9 T 06-07-2017 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 5.7E-25 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 327 4.0E-36 T 06-07-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Gene3D G3DSA:2.170.120.12 68 174 2.2E-48 T 06-07-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 SUPERFAMILY SSF47789 249 325 6.93E-27 T 06-07-2017 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 25 316 4.1E-120 T 06-07-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 6 316 36.527 T 06-07-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03510 ebf4e1e36d6fe888ca07e609d2aa43ed 336 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 30 225 9.0E-22 T 06-07-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 SMART SM00345 14 72 4.9E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 Pfam PF07729 FCD domain 83 205 5.2E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 8.2E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 Gene3D G3DSA:1.20.120.530 76 216 3.0E-21 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 Gene3D G3DSA:1.10.10.10 4 72 2.9E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 SUPERFAMILY SSF48008 79 213 3.66E-21 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 SMART SM00895 82 206 4.1E-10 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14425 f8548c06f2882f73baf235496738201a 235 SUPERFAMILY SSF46785 2 96 6.37E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 SUPERFAMILY SSF51649 125 414 2.09E-82 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 Gene3D G3DSA:3.30.70.150 2 124 2.3E-36 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 13 121 4.3E-7 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 Gene3D G3DSA:3.20.20.110 126 414 4.1E-73 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 SUPERFAMILY SSF54966 2 125 1.22E-34 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 173 181 - T 06-07-2017 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS32555 c2b70587dac3b1f1b719e67f7a21c398 418 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 131 412 8.4E-100 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 SMART SM00448 3 113 3.0E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 Gene3D G3DSA:3.40.50.2300 3 121 9.5E-41 T 06-07-2017 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 Pfam PF00072 Response regulator receiver domain 5 113 1.9E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 SUPERFAMILY SSF52172 3 130 5.98E-42 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 SMART SM00862 148 224 2.6E-26 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 SUPERFAMILY SSF46894 128 224 7.09E-29 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 Gene3D G3DSA:1.10.10.10 128 225 1.2E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27740 5d9a41a8671eaab4f009419ce63e7eab 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 3.5E-24 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 SUPERFAMILY SSF51735 1 236 8.28E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.1E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.1E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.1E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.1E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.1E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.5E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.5E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 Gene3D G3DSA:3.40.50.720 1 234 2.2E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04890 c24b7f9ce54b20cf4c204316d99a2a7b 246 Pfam PF00106 short chain dehydrogenase 9 200 1.2E-46 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10755 4ca0e0463628296289dc9a5aa2f1e25a 293 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 11 276 3.4E-50 T 06-07-2017 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS10755 4ca0e0463628296289dc9a5aa2f1e25a 293 Pfam PF08543 Phosphomethylpyrimidine kinase 81 256 4.6E-14 T 06-07-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 CDO28_RS10755 4ca0e0463628296289dc9a5aa2f1e25a 293 SUPERFAMILY SSF53613 9 279 3.12E-59 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS10755 4ca0e0463628296289dc9a5aa2f1e25a 293 Gene3D G3DSA:3.40.1190.20 10 282 6.1E-67 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS34495 74e9311e916d623432db66e64317c88c 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS34495 74e9311e916d623432db66e64317c88c 398 Pfam PF00872 Transposase, Mutator family 1 377 8.9E-160 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 SUPERFAMILY SSF47090 41 107 7.06E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 SUPERFAMILY SSF141523 195 322 4.19E-27 T 06-07-2017 CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 Pfam PF03734 L,D-transpeptidase catalytic domain 193 320 1.9E-20 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 Gene3D G3DSA:2.40.440.10 191 321 1.7E-28 T 06-07-2017 CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 Pfam PF01471 Putative peptidoglycan binding domain 52 106 4.0E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS27800 c1f01b2d4373ae557639c1e7374b13c3 327 Gene3D G3DSA:1.10.101.10 52 107 3.4E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS29625 9274d87d673d2a3472f23bb2197705de 225 Gene3D G3DSA:3.40.225.10 1 212 8.0E-66 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS29625 9274d87d673d2a3472f23bb2197705de 225 SUPERFAMILY SSF53639 2 210 6.67E-59 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS29625 9274d87d673d2a3472f23bb2197705de 225 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 187 2.5E-42 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS29625 9274d87d673d2a3472f23bb2197705de 225 SMART SM01007 8 187 4.5E-58 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 Pfam PF16916 Dimerisation domain of Zinc Transporter 212 289 1.0E-22 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 290 2.6E-67 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 Gene3D G3DSA:1.20.1510.10 14 207 7.6E-44 T 06-07-2017 IPR027469 Cation efflux protein transmembrane domain CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 SUPERFAMILY SSF161111 6 208 8.37E-53 T 06-07-2017 CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 Pfam PF01545 Cation efflux family 19 207 1.9E-38 T 06-07-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 SUPERFAMILY SSF160240 210 289 2.75E-21 T 06-07-2017 CDO28_RS15280 d21510fdaaa28b42fc41b62a44e6650a 306 Gene3D G3DSA:3.30.70.1350 208 290 3.8E-26 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain CDO28_RS32830 832c025df993bfbfd57a2b8e52e9d16f 621 Pfam PF13506 Glycosyl transferase family 21 165 332 3.9E-29 T 06-07-2017 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|Reactome: R-HSA-1660662 CDO28_RS32830 832c025df993bfbfd57a2b8e52e9d16f 621 SUPERFAMILY SSF53448 112 359 1.22E-33 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS32830 832c025df993bfbfd57a2b8e52e9d16f 621 Gene3D G3DSA:3.90.550.10 173 341 1.4E-8 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS07115 d4f43b47b2db9daadcea35e64fd410b6 232 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 219 1.3E-53 T 06-07-2017 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 CDO28_RS07115 d4f43b47b2db9daadcea35e64fd410b6 232 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 7 221 3.4E-54 T 06-07-2017 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 CDO28_RS07115 d4f43b47b2db9daadcea35e64fd410b6 232 SUPERFAMILY SSF100950 4 220 5.02E-54 T 06-07-2017 CDO28_RS07115 d4f43b47b2db9daadcea35e64fd410b6 232 Gene3D G3DSA:3.40.50.1360 4 223 1.3E-51 T 06-07-2017 CDO28_RS18655 5c08f5cc464b17c35b00e84c9612ba5b 308 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS18655 5c08f5cc464b17c35b00e84c9612ba5b 308 SUPERFAMILY SSF52540 3 227 3.89E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18655 5c08f5cc464b17c35b00e84c9612ba5b 308 Pfam PF00005 ABC transporter 21 163 2.7E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS18655 5c08f5cc464b17c35b00e84c9612ba5b 308 Gene3D G3DSA:3.40.50.300 2 227 9.0E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18655 5c08f5cc464b17c35b00e84c9612ba5b 308 SMART SM00382 30 219 5.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 SMART SM00382 36 229 1.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 SUPERFAMILY SSF52540 24 225 3.19E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 Pfam PF00005 ABC transporter 28 181 3.6E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 6 225 2.7E-102 T 06-07-2017 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 CDO28_RS30045 d94df98aac15df8e9c4e755b10e56b85 235 Gene3D G3DSA:3.40.50.300 5 225 5.2E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 13.977 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 1.1E-22 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 06-07-2017 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 PRINTS PR00976 Ribosomal protein S21 family signature 35 45 6.0E-6 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 PRINTS PR00976 Ribosomal protein S21 family signature 11 20 6.0E-6 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 PRINTS PR00976 Ribosomal protein S21 family signature 23 33 6.0E-6 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 Pfam PF01165 Ribosomal protein S21 2 55 1.9E-20 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS12830 d46aadbc9eb2b9951446ad14f6dd0824 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 41 6.0E-10 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 39.493 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Pfam PF13522 Glutamine amidotransferase domain 65 174 1.5E-20 T 06-07-2017 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Gene3D G3DSA:3.60.20.10 2 232 8.6E-76 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Gene3D G3DSA:3.40.50.10490 439 608 1.1E-65 T 06-07-2017 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Pfam PF01380 SIS domain 292 414 5.6E-26 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Pfam PF01380 SIS domain 459 590 1.5E-35 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 Gene3D G3DSA:3.40.50.10490 244 438 3.1E-56 T 06-07-2017 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 3.6E-235 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 SUPERFAMILY SSF53697 244 608 9.02E-108 T 06-07-2017 CDO28_RS01075 e36b96b6d160d9d17937e6cbbf185c11 608 SUPERFAMILY SSF56235 2 232 5.06E-74 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10570 a41249ee4c87e20d967a6cd6f3f18468 198 Gene3D G3DSA:3.40.109.10 6 195 6.9E-49 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS10570 a41249ee4c87e20d967a6cd6f3f18468 198 Pfam PF00881 Nitroreductase family 19 162 1.5E-16 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDO28_RS10570 a41249ee4c87e20d967a6cd6f3f18468 198 SUPERFAMILY SSF55469 9 195 5.5E-49 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 Gene3D G3DSA:1.20.120.530 90 232 1.1E-33 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 Gene3D G3DSA:1.10.10.10 10 81 4.3E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 Pfam PF07729 FCD domain 109 227 3.3E-25 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.5E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.5E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 8.1E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 SMART SM00345 17 76 9.5E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 SMART SM00895 105 227 2.4E-23 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 SUPERFAMILY SSF48008 101 231 7.59E-29 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32550 b3a49e0d400519dd50c764344f22ba54 237 SUPERFAMILY SSF46785 10 80 2.95E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 SMART SM00631 77 361 6.8E-77 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 103 115 1.9E-13 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 125 139 1.9E-13 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 203 211 1.9E-13 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 258 271 1.9E-13 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 ProSitePatterns PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature. 125 147 - T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 Pfam PF00246 Zinc carboxypeptidase 84 364 8.3E-69 T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 ProSitePatterns PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature. 261 271 - T 06-07-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 SUPERFAMILY SSF53187 75 373 4.3E-82 T 06-07-2017 CDO28_RS19715 c83c6bfb8beab26708981adfe2709f5f 379 Gene3D G3DSA:3.40.630.10 75 373 4.4E-93 T 06-07-2017 CDO28_RS02375 f85f4f194e4ce82342e71b645606febd 169 Gene3D G3DSA:3.40.630.30 1 164 1.8E-40 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS02375 f85f4f194e4ce82342e71b645606febd 169 Pfam PF13420 Acetyltransferase (GNAT) domain 3 155 3.2E-23 T 06-07-2017 CDO28_RS02375 f85f4f194e4ce82342e71b645606febd 169 SUPERFAMILY SSF55729 1 163 2.62E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 161.489 T 06-07-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 126 297 5.3E-75 T 06-07-2017 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 SUPERFAMILY SSF52440 5 123 1.96E-40 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Gene3D G3DSA:3.30.470.20 194 300 9.8E-48 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 6 122 5.0E-41 T 06-07-2017 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 SUPERFAMILY SSF56059 126 313 2.05E-59 T 06-07-2017 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Gene3D G3DSA:3.40.50.20 6 131 4.3E-50 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 6 313 1.1E-124 T 06-07-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS08870 fa71e2a4364494506fc2e035d7748545 315 Gene3D G3DSA:3.30.1490.20 139 193 8.5E-26 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS06150 e7229d424658c36ceef27d2566ceabf2 133 SUPERFAMILY SSF54637 8 131 9.47E-28 T 06-07-2017 IPR029069 HotDog domain CDO28_RS06150 e7229d424658c36ceef27d2566ceabf2 133 Gene3D G3DSA:3.10.129.10 5 131 6.0E-27 T 06-07-2017 IPR029069 HotDog domain CDO28_RS06150 e7229d424658c36ceef27d2566ceabf2 133 Pfam PF13279 Thioesterase-like superfamily 16 127 2.6E-8 T 06-07-2017 CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 Pfam PF00226 DnaJ domain 13 71 1.1E-15 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 PRINTS PR00625 DnaJ domain signature 46 66 1.6E-6 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 PRINTS PR00625 DnaJ domain signature 15 33 1.6E-6 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 SMART SM00271 12 66 4.1E-16 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 Gene3D G3DSA:1.10.287.110 13 76 9.6E-21 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS18585 add5da690c01a4d26ff041ac69e98928 205 SUPERFAMILY SSF46565 10 77 6.8E-22 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS04935 9391c103a045f02d6f09d0028edec2aa 166 Gene3D G3DSA:3.90.1590.10 6 163 5.0E-43 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS04935 9391c103a045f02d6f09d0028edec2aa 166 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 109 5.5E-18 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS04935 9391c103a045f02d6f09d0028edec2aa 166 SUPERFAMILY SSF51316 4 130 2.51E-42 T 06-07-2017 IPR011057 Mss4-like CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 Gene3D G3DSA:3.40.50.720 188 303 7.2E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 SMART SM00829 18 354 1.1E-12 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 182 203 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 Gene3D G3DSA:3.90.180.10 7 187 3.3E-44 T 06-07-2017 IPR011032 GroES-like CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 SUPERFAMILY SSF51735 160 327 1.57E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 Pfam PF00107 Zinc-binding dehydrogenase 193 318 7.0E-23 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 37 149 4.3E-13 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS32660 f1efc879e6e768e1363f040c72c2c2da 357 SUPERFAMILY SSF50129 5 189 1.4E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 PRINTS PR00723 Subtilisin serine protease family (S8) signature 209 228 3.2E-8 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 PRINTS PR00723 Subtilisin serine protease family (S8) signature 246 259 3.2E-8 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 PRINTS PR00723 Subtilisin serine protease family (S8) signature 403 419 3.2E-8 T 06-07-2017 IPR015500 Peptidase S8, subtilisin-related CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 404 414 - T 06-07-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 SUPERFAMILY SSF52743 193 461 1.44E-58 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 Gene3D G3DSA:3.40.50.200 195 462 1.2E-58 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS21095 ea94ef95eeee1fce5c938ce9c62c1356 466 Pfam PF00082 Subtilase family 211 454 1.4E-27 T 06-07-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 91 119 - T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 Gene3D G3DSA:2.60.130.10 20 248 4.5E-82 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 Pfam PF00775 Dioxygenase 56 240 9.6E-55 T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 19 52 3.6E-16 T 06-07-2017 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 26 248 6.7E-110 T 06-07-2017 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 CDO28_RS30170 1d7d453c447addda2db3125f2a7142b6 253 SUPERFAMILY SSF49482 19 249 5.23E-82 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 SMART SM00895 77 201 1.1E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 SUPERFAMILY SSF48008 73 205 2.62E-27 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 67 3.1E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 SUPERFAMILY SSF46785 4 71 3.61E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 SMART SM00345 9 67 3.5E-20 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 Gene3D G3DSA:1.20.120.530 72 209 2.9E-31 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 Pfam PF07729 FCD domain 77 200 4.4E-28 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 Gene3D G3DSA:1.10.10.10 7 67 1.9E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 5.3E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21150 6f07bdb291d333dff30b3cccec839781 224 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 5.3E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25860 5d2087a7971a0dea80d4f48a7ac2af6b 479 SUPERFAMILY SSF81442 18 460 5.89E-77 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS25860 5d2087a7971a0dea80d4f48a7ac2af6b 479 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 19 435 2.0E-71 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS25860 5d2087a7971a0dea80d4f48a7ac2af6b 479 Gene3D G3DSA:1.20.210.10 18 457 9.2E-41 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS26805 b14da58def86d8ca8e9fac390704da29 312 Gene3D G3DSA:3.40.50.300 1 237 5.6E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26805 b14da58def86d8ca8e9fac390704da29 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26805 b14da58def86d8ca8e9fac390704da29 312 SUPERFAMILY SSF52540 1 240 1.82E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26805 b14da58def86d8ca8e9fac390704da29 312 Pfam PF00005 ABC transporter 18 163 4.0E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26805 b14da58def86d8ca8e9fac390704da29 312 SMART SM00382 26 213 4.6E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12700 940c78e178d2785ecdd700caea7b8681 232 Pfam PF13302 Acetyltransferase (GNAT) domain 63 164 4.3E-10 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS12700 940c78e178d2785ecdd700caea7b8681 232 Gene3D G3DSA:3.40.630.30 6 205 1.8E-46 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS12700 940c78e178d2785ecdd700caea7b8681 232 SUPERFAMILY SSF55729 33 189 3.29E-29 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 SUPERFAMILY SSF51419 10 235 2.29E-44 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 Gene3D G3DSA:3.20.20.10 17 229 4.9E-17 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 Gene3D G3DSA:2.40.37.10 230 342 3.7E-20 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 PIRSF PIRSF038941 1 365 8.8E-141 T 06-07-2017 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 SUPERFAMILY SSF50621 207 354 1.3E-29 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 256 340 1.2E-9 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CDO28_RS30455 3aa2486779997fde61fa08a9146cff08 365 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 2 362 2.6E-128 T 06-07-2017 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 CDO28_RS25495 d30286652633545d28f5acb48f0276cd 140 Gene3D G3DSA:2.60.120.10 61 128 3.7E-6 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS25495 d30286652633545d28f5acb48f0276cd 140 SUPERFAMILY SSF51182 35 127 1.34E-5 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 Pfam PF07811 TadE-like protein 445 487 1.6E-9 T 06-07-2017 IPR012495 TadE-like CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 Gene3D G3DSA:3.40.50.300 160 400 1.3E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 Pfam PF13614 AAA domain 162 325 4.3E-12 T 06-07-2017 IPR025669 AAA domain CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 Gene3D G3DSA:3.40.50.2300 51 156 1.4E-6 T 06-07-2017 CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 SUPERFAMILY SSF52172 60 154 9.25E-8 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS24865 381e15589af0bdfbd448aed21cf48d13 586 SUPERFAMILY SSF52540 161 401 4.32E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14865 41d40cad8d3f86278aa17e73719ad264 128 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 3 122 9.0E-51 T 06-07-2017 IPR009387 Toxin HigB-2 CDO28_RS14865 41d40cad8d3f86278aa17e73719ad264 128 PIRSF PIRSF018634 3 126 1.3E-53 T 06-07-2017 IPR009387 Toxin HigB-2 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 8.7E-24 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 8.7E-24 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 8.7E-24 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 8.7E-24 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 8.7E-24 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 12 436 39.233 T 06-07-2017 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 Pfam PF00375 Sodium:dicarboxylate symporter family 19 411 3.7E-110 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 46 61 - T 06-07-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 SUPERFAMILY SSF118215 19 412 1.28E-116 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 Gene3D G3DSA:1.10.3860.10 17 417 6.6E-116 T 06-07-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDO28_RS30350 c2dac8ddb4c4c45cc35710d9998933b7 441 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 06-07-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 Gene3D G3DSA:3.30.160.20 20 83 6.4E-30 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 ProSitePatterns PS00585 Ribosomal protein S5 signature. 39 71 - T 06-07-2017 IPR018192 Ribosomal protein S5, N-terminal, conserved site CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 SUPERFAMILY SSF54211 91 170 1.16E-26 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 SUPERFAMILY SSF54768 19 87 3.24E-23 T 06-07-2017 CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 20 172 1.1E-66 T 06-07-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 Pfam PF03719 Ribosomal protein S5, C-terminal domain 98 169 1.1E-30 T 06-07-2017 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 Gene3D G3DSA:3.30.230.10 89 170 5.2E-34 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 175 35.605 T 06-07-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDO28_RS03545 867b09c86cbe4469496eeede7ac3d9f7 189 Pfam PF00333 Ribosomal protein S5, N-terminal domain 23 86 4.0E-28 T 06-07-2017 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS04815 6f9c3706f374162f65ebad2d04573305 149 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 92 1.1E-25 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04815 6f9c3706f374162f65ebad2d04573305 149 Pfam PF01250 Ribosomal protein S6 4 91 2.1E-30 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04815 6f9c3706f374162f65ebad2d04573305 149 SUPERFAMILY SSF54995 1 104 5.76E-35 T 06-07-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04815 6f9c3706f374162f65ebad2d04573305 149 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 20.997 T 06-07-2017 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS04815 6f9c3706f374162f65ebad2d04573305 149 Gene3D G3DSA:3.30.70.60 1 105 2.1E-38 T 06-07-2017 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CDO28_RS00230 ddfd757f1c15d7e01b076b24d2004a02 359 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 68 349 1.1E-96 T 06-07-2017 IPR006507 Uncharacterised protein family UPF0283 CDO28_RS00230 ddfd757f1c15d7e01b076b24d2004a02 359 Pfam PF05128 Domain of unknown function (DUF697) 194 348 7.5E-49 T 06-07-2017 IPR021147 Protein of unknown function DUF697 CDO28_RS00230 ddfd757f1c15d7e01b076b24d2004a02 359 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 16 358 37.501 T 06-07-2017 IPR006507 Uncharacterised protein family UPF0283 CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 Gene3D G3DSA:3.40.50.300 315 374 4.6E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 Gene3D G3DSA:3.40.50.300 136 239 4.6E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 Pfam PF13538 UvrD-like helicase C-terminal domain 326 374 6.5E-20 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 SUPERFAMILY SSF52540 5 167 3.86E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 Gene3D G3DSA:3.40.50.300 7 132 7.7E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 Pfam PF13604 AAA domain 13 191 8.3E-27 T 06-07-2017 CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 SUPERFAMILY SSF52540 134 274 4.05E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16805 d5c26c4e249046783ad4c17726954997 375 SUPERFAMILY SSF52540 301 374 4.05E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.132 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 Gene3D G3DSA:3.30.1490.10 76 132 3.0E-28 T 06-07-2017 CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 SUPERFAMILY SSF56047 3 132 1.57E-44 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 Pfam PF00410 Ribosomal protein S8 5 132 1.2E-47 T 06-07-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03560 5b4269c6f735a3c954f079c336509b88 132 Gene3D G3DSA:3.30.1370.30 3 72 8.7E-24 T 06-07-2017 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 ProSitePatterns PS00786 5'-nucleotidase signature 2. 125 136 - T 06-07-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 Gene3D G3DSA:3.60.21.10 32 376 6.5E-88 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 Pfam PF00149 Calcineurin-like phosphoesterase 39 282 1.1E-10 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 SUPERFAMILY SSF55816 379 614 7.46E-44 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 Gene3D G3DSA:3.90.780.10 379 614 1.2E-45 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 Pfam PF02872 5'-nucleotidase, C-terminal domain 379 573 2.3E-24 T 06-07-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 237 254 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 450 473 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 550 569 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 305 325 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 37 55 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 PRINTS PR01607 Apyrase family signature 265 288 5.7E-28 T 06-07-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 CDO28_RS01705 2e104cd8f2eb8009f342cc03533968e8 657 SUPERFAMILY SSF56300 32 376 1.34E-80 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS03140 43e0c5864b1b8e380e4b914c01c951be 193 Pfam PF00583 Acetyltransferase (GNAT) family 70 166 1.6E-9 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS03140 43e0c5864b1b8e380e4b914c01c951be 193 SUPERFAMILY SSF55729 2 172 4.36E-19 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS03140 43e0c5864b1b8e380e4b914c01c951be 193 Gene3D G3DSA:3.40.630.30 6 188 7.4E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 3 335 2.0E-90 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 PIRSF PIRSF002465 1 340 5.9E-122 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 146.364 T 06-07-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 Pfam PF02504 Fatty acid synthesis protein 2 324 9.3E-100 T 06-07-2017 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 Gene3D G3DSA:3.40.718.10 2 334 2.9E-119 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS04380 f95c207d37e11c3d6abff9ab89946f23 347 SUPERFAMILY SSF53659 2 336 4.52E-101 T 06-07-2017 CDO28_RS00340 7492910c2c42dec617dfae34021e1fd3 294 PIRSF PIRSF004976 22 291 4.4E-67 T 06-07-2017 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Reactome: R-HSA-6782315 CDO28_RS00340 7492910c2c42dec617dfae34021e1fd3 294 Pfam PF01171 PP-loop family 65 229 3.3E-14 T 06-07-2017 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CDO28_RS00340 7492910c2c42dec617dfae34021e1fd3 294 Gene3D G3DSA:3.40.50.620 47 230 3.0E-19 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS00340 7492910c2c42dec617dfae34021e1fd3 294 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 33 294 51.116 T 06-07-2017 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Reactome: R-HSA-6782315 CDO28_RS00340 7492910c2c42dec617dfae34021e1fd3 294 SUPERFAMILY SSF52402 40 259 1.3E-49 T 06-07-2017 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 Pfam PF04397 LytTr DNA-binding domain 152 248 2.1E-13 T 06-07-2017 IPR007492 LytTR DNA-binding domain GO:0003677 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 Gene3D G3DSA:2.40.50.40 142 210 1.5E-7 T 06-07-2017 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 SMART SM00850 150 249 1.0E-11 T 06-07-2017 IPR007492 LytTR DNA-binding domain GO:0003677 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 SUPERFAMILY SSF52172 1 121 4.41E-25 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 Pfam PF00072 Response regulator receiver domain 4 108 1.9E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 Gene3D G3DSA:3.40.50.2300 1 117 3.1E-25 T 06-07-2017 CDO28_RS27660 b8d2a90aa42091eab9232e55bb8dfbbc 260 SMART SM00448 2 110 6.3E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 SUPERFAMILY SSF46785 2 94 1.36E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 1.1E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 1.1E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 Gene3D G3DSA:1.10.10.10 11 90 7.8E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 Pfam PF12840 Helix-turn-helix domain 16 73 3.3E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26920 16ab1e35557a583a4a05726f68355f06 123 SMART SM00418 15 94 3.0E-5 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Gene3D G3DSA:2.30.42.10 264 359 5.8E-29 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 SUPERFAMILY SSF50156 245 351 8.68E-23 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 SUPERFAMILY SSF50156 372 443 6.57E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 SUPERFAMILY SSF50494 37 254 4.42E-64 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Gene3D G3DSA:2.40.10.10 151 263 2.3E-44 T 06-07-2017 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Gene3D G3DSA:2.30.42.10 378 443 9.2E-17 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Pfam PF13365 Trypsin-like peptidase domain 88 223 1.4E-34 T 06-07-2017 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Gene3D G3DSA:2.40.10.10 36 150 2.8E-34 T 06-07-2017 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 SMART SM00228 262 344 9.4E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 SMART SM00228 368 436 4.0E-10 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 119 139 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 302 314 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 159 183 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 194 211 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 PRINTS PR00834 HtrA/DegQ protease family signature 98 110 4.4E-54 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 38 442 2.5E-139 T 06-07-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Pfam PF13180 PDZ domain 262 352 5.3E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS21715 c9b115084854c08a4e9255fcee80d322 444 Pfam PF13180 PDZ domain 371 438 1.5E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03700 372957137fa96b7c4927f4dec65728d6 66 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 8 62 3.6E-22 T 06-07-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 CDO28_RS03700 372957137fa96b7c4927f4dec65728d6 66 Gene3D G3DSA:1.20.5.1030 5 62 9.7E-24 T 06-07-2017 CDO28_RS03700 372957137fa96b7c4927f4dec65728d6 66 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 9 61 8.0E-20 T 06-07-2017 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03700 372957137fa96b7c4927f4dec65728d6 66 Hamap MF_00422 Protein translocase subunit SecE [secE]. 5 60 11.378 T 06-07-2017 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS23290 8e453f8e1dde452ddafec3eadf37a36f 79 SUPERFAMILY SSF143120 22 62 2.88E-6 T 06-07-2017 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 Pfam PF00512 His Kinase A (phospho-acceptor) domain 368 431 6.3E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 SMART SM00387 479 590 2.1E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 Gene3D G3DSA:3.30.565.10 437 589 2.8E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 SUPERFAMILY SSF47384 365 432 1.77E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 589 8.5E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 587 8.7E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 549 8.7E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 550 568 8.7E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 535 8.7E-20 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 SMART SM00388 366 436 0.0015 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS25150 c33748dd2d4f436b0df7a5de34a51eaa 592 SUPERFAMILY SSF55874 434 588 9.82E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 Gene3D G3DSA:1.10.10.10 156 215 2.9E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 1.3E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 SUPERFAMILY SSF75516 3 127 2.09E-32 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 Gene3D G3DSA:3.30.450.80 3 155 4.8E-35 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 Pfam PF03472 Autoinducer binding domain 3 121 1.6E-27 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 SUPERFAMILY SSF46894 143 215 9.86E-12 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS23490 ab14ac9dfc28e2a7c4be6497c9d9e76e 215 SMART SM00421 152 209 2.2E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 SUPERFAMILY SSF51735 2 232 1.16E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PIRSF PIRSF000126 1 242 5.0E-51 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 Pfam PF00106 short chain dehydrogenase 8 200 1.2E-61 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 Gene3D G3DSA:3.40.50.720 1 232 6.3E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 2.8E-5 T 06-07-2017 CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19585 c3cfe9b5a8adc376109af4cc3828ba62 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12725 df156f566363d07b6bc9402e6f8d4642 214 Pfam PF06226 Protein of unknown function (DUF1007) 9 214 1.8E-62 T 06-07-2017 IPR010412 Protein of unknown function DUF1007 CDO28_RS12725 df156f566363d07b6bc9402e6f8d4642 214 PIRSF PIRSF008159 1 214 2.4E-86 T 06-07-2017 IPR016537 Uncharacterised conserved protein UCP008159, CDO28_RS07800 55bcde3bdb18c2e0074edd4094b1fc3b 388 SUPERFAMILY SSF53383 4 384 1.99E-103 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS07800 55bcde3bdb18c2e0074edd4094b1fc3b 388 Pfam PF00155 Aminotransferase class I and II 40 381 9.3E-57 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS07800 55bcde3bdb18c2e0074edd4094b1fc3b 388 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS07800 55bcde3bdb18c2e0074edd4094b1fc3b 388 Gene3D G3DSA:3.40.640.10 43 273 4.3E-75 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS07800 55bcde3bdb18c2e0074edd4094b1fc3b 388 Gene3D G3DSA:3.90.1150.10 274 384 3.5E-25 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 SMART SM00421 149 206 3.2E-21 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 SMART SM00448 4 118 1.2E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 3.2E-19 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 Pfam PF00072 Response regulator receiver domain 6 117 9.5E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 Gene3D G3DSA:3.40.50.2300 3 130 1.2E-29 T 06-07-2017 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 SUPERFAMILY SSF52172 1 180 6.04E-28 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 Gene3D G3DSA:1.10.10.10 145 210 2.2E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.0E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.0E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07815 074fdf626fbb76339f98c788e2a6bcd7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.0E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 Gene3D G3DSA:3.40.50.300 385 561 4.8E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 SUPERFAMILY SSF52540 387 570 4.77E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 Pfam PF00005 ABC transporter 405 534 5.3E-8 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 Gene3D G3DSA:1.20.1560.10 38 357 7.2E-17 T 06-07-2017 CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 Pfam PF06472 ABC transporter transmembrane region 2 24 312 1.1E-34 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS28050 d8be45b5f67fbfa5809629d51815cc50 606 SUPERFAMILY SSF90123 38 356 1.31E-20 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS17075 1ec4e901b4726080ad67e56ae0ea8621 579 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 569 5.5E-72 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 339 355 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 424 447 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 303 323 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 405 419 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 226 239 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 PRINTS PR00996 Glutamate methyltransferase family signature 263 275 1.2E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00138 204 464 1.2E-76 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:3.80.10.10 643 717 7.1E-4 T 06-07-2017 IPR032675 Leucine-rich repeat domain, L domain-like CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF01339 CheB methylesterase 10 183 8.6E-51 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00091 720 785 2.7 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00091 504 569 11.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00091 844 914 5.9E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SUPERFAMILY SSF53335 271 449 4.17E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:3.30.450.20 828 954 5.7E-22 T 06-07-2017 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF13596 PAS domain 722 826 1.6E-26 T 06-07-2017 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF13426 PAS domain 856 955 1.9E-9 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF01739 CheR methyltransferase, SAM binding domain 271 447 2.8E-48 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:3.40.50.150 269 463 2.0E-57 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SUPERFAMILY SSF52738 7 190 5.23E-51 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF03705 CheR methyltransferase, all-alpha domain 207 257 1.4E-15 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 849 961 7.6E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:1.10.155.10 203 265 7.8E-16 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:3.30.450.20 718 827 9.7E-13 T 06-07-2017 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SUPERFAMILY SSF47757 198 273 4.84E-16 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Pfam PF07536 HWE histidine kinase 969 1050 9.8E-30 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SUPERFAMILY SSF55785 733 835 1.61E-10 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00086 789 829 12.0 T 06-07-2017 IPR001610 PAC motif CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00086 916 956 11.0 T 06-07-2017 IPR001610 PAC motif CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SUPERFAMILY SSF55785 826 954 4.19E-20 T 06-07-2017 IPR000014 PAS domain CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 SMART SM00911 969 1051 7.4E-39 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS33075 ddc2c61aabd787e40e564d00cb65b80c 1160 Gene3D G3DSA:3.40.50.180 4 190 3.2E-58 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS22065 dc690dfe51dd211bd0acee954a28bfa7 276 SUPERFAMILY SSF161098 4 276 7.57E-65 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22065 dc690dfe51dd211bd0acee954a28bfa7 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 267 2.1E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22065 dc690dfe51dd211bd0acee954a28bfa7 276 Gene3D G3DSA:1.10.3720.10 3 264 2.1E-59 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 SUPERFAMILY SSF54919 1 139 1.05E-54 T 06-07-2017 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.5E-36 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.5E-36 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.5E-36 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.5E-36 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.5E-36 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 SMART SM00562 3 140 5.0E-79 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 7.3E-52 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 Gene3D G3DSA:3.30.70.141 1 139 2.8E-53 T 06-07-2017 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 06-07-2017 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS04675 d6983704f3422a53c8a1f469d88e3500 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.285 T 06-07-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDO28_RS30950 23fe8b5c3128572c22ac4a5973d697e0 309 Gene3D G3DSA:3.40.50.2300 140 304 1.2E-46 T 06-07-2017 CDO28_RS30950 23fe8b5c3128572c22ac4a5973d697e0 309 Gene3D G3DSA:3.40.50.2300 21 139 8.6E-27 T 06-07-2017 CDO28_RS30950 23fe8b5c3128572c22ac4a5973d697e0 309 Pfam PF13407 Periplasmic binding protein domain 22 281 4.2E-49 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS30950 23fe8b5c3128572c22ac4a5973d697e0 309 SUPERFAMILY SSF53822 5 304 2.06E-75 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 Gene3D G3DSA:1.10.10.10 9 86 9.2E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 SMART SM00345 20 79 1.5E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 Pfam PF07729 FCD domain 103 227 1.1E-23 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 4.1E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 4.1E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 79 1.5E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 Gene3D G3DSA:1.20.120.530 103 237 7.7E-29 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 SUPERFAMILY SSF48008 102 234 7.32E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 SUPERFAMILY SSF46785 10 83 1.18E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10055 f69cb592ba0857bebb02863865e35554 240 SMART SM00895 101 228 9.3E-18 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Pfam PF01614 Bacterial transcriptional regulator 140 259 1.3E-30 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 SMART SM00346 19 109 1.1E-19 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 294 311 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 370 391 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 516 534 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 474 491 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 434 454 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 411 433 6.7E-42 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Gene3D G3DSA:3.30.450.40 89 263 1.1E-48 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Pfam PF09339 IclR helix-turn-helix domain 21 71 5.8E-13 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 SUPERFAMILY SSF46785 21 93 1.13E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 SUPERFAMILY SSF63829 283 565 2.19E-67 T 06-07-2017 CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Gene3D G3DSA:2.120.10.30 282 567 7.3E-90 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Gene3D G3DSA:1.10.10.10 14 88 2.2E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 293 535 6.7E-84 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS22085 c5fd70438bd42a0801ada50892327a26 569 SUPERFAMILY SSF55781 77 262 7.19E-46 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 Gene3D G3DSA:3.90.226.10 19 288 2.6E-66 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 SUPERFAMILY SSF52096 25 283 3.4E-79 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 13 284 2.0E-105 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.2E-37 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.2E-37 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.2E-37 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.2E-37 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.2E-37 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 Pfam PF01039 Carboxyl transferase domain 100 242 3.4E-20 T 06-07-2017 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS10490 f5f327a186245a7eb22e9be1cef182eb 304 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 36.343 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS20880 e267930fb5cf01f527c3cdc6673190ec 243 Gene3D G3DSA:3.40.50.300 2 234 9.8E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20880 e267930fb5cf01f527c3cdc6673190ec 243 Pfam PF00005 ABC transporter 21 176 7.5E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20880 e267930fb5cf01f527c3cdc6673190ec 243 SUPERFAMILY SSF52540 4 233 4.07E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20880 e267930fb5cf01f527c3cdc6673190ec 243 SMART SM00382 30 231 9.3E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 PIRSF PIRSF002811 1 643 1.6E-139 T 06-07-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 SUPERFAMILY SSF56731 116 428 2.22E-102 T 06-07-2017 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Pfam PF13662 Toprim domain 266 331 3.6E-18 T 06-07-2017 IPR006171 Toprim domain CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Hamap MF_00974 DNA primase [dnaG]. 2 632 25.173 T 06-07-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Gene3D G3DSA:3.90.580.10 1 104 7.3E-35 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Pfam PF01807 CHC2 zinc finger 5 101 3.2E-27 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 TIGRFAM TIGR01391 dnaG: DNA primase 3 424 3.7E-128 T 06-07-2017 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Gene3D G3DSA:3.40.1360.10 244 372 1.2E-46 T 06-07-2017 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 SMART SM00493 265 336 2.1E-13 T 06-07-2017 IPR006171 Toprim domain CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 SMART SM00400 39 93 3.2E-24 T 06-07-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 SUPERFAMILY SSF57783 1 105 9.52E-33 T 06-07-2017 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Gene3D G3DSA:3.90.980.10 117 243 2.2E-40 T 06-07-2017 IPR013264 DNA primase, catalytic core, N-terminal CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Pfam PF10410 DnaB-helicase binding domain of primase 376 426 1.5E-6 T 06-07-2017 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 CDO28_RS15630 54f0590a99c94d0f1393d04ebed45d94 667 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 254 1.3E-40 T 06-07-2017 IPR013264 DNA primase, catalytic core, N-terminal CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 SUPERFAMILY SSF53098 1 169 1.48E-56 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 Gene3D G3DSA:3.30.420.10 1 171 9.2E-65 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 SMART SM00479 2 172 8.3E-47 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 171 8.2E-52 T 06-07-2017 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 Pfam PF00929 Exonuclease 4 163 3.9E-38 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III CDO28_RS10610 69fe365d31ff49acf484ccdcfff54000 242 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 228 5.6E-74 T 06-07-2017 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Gene3D G3DSA:3.20.20.450 712 962 1.7E-90 T 06-07-2017 IPR001633 EAL domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SMART SM00086 485 527 3.2E-6 T 06-07-2017 IPR001610 PAC motif CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SMART SM00052 710 955 1.6E-97 T 06-07-2017 IPR001633 EAL domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 536 698 1.9E-30 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Pfam PF00563 EAL domain 716 950 3.1E-71 T 06-07-2017 IPR001633 EAL domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Pfam PF00990 Diguanylate cyclase, GGDEF domain 538 696 8.0E-35 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Pfam PF08447 PAS fold 439 521 3.4E-15 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Gene3D G3DSA:3.30.70.270 541 703 4.2E-42 T 06-07-2017 CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Gene3D G3DSA:3.30.450.20 410 525 1.2E-22 T 06-07-2017 CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 460 534 1.4E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SUPERFAMILY SSF55073 543 700 5.73E-37 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SUPERFAMILY SSF55785 419 528 1.17E-16 T 06-07-2017 IPR000014 PAS domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 Pfam PF07696 7TMR-DISM extracellular 2 88 181 1.1E-4 T 06-07-2017 IPR011622 7TM-DISM receptor, extracellular domain, type 2 CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SUPERFAMILY SSF141868 716 963 3.79E-80 T 06-07-2017 IPR001633 EAL domain CDO28_RS05975 119a007aa9d439dd3b25533ee218a609 970 SMART SM00267 527 700 1.7E-41 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS00655 74e451b5824a1d1c4539f48772b73272 611 SUPERFAMILY SSF53474 263 543 1.22E-38 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00655 74e451b5824a1d1c4539f48772b73272 611 Gene3D G3DSA:3.40.50.1820 258 581 2.8E-30 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00655 74e451b5824a1d1c4539f48772b73272 611 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 82 608 2.4E-220 T 06-07-2017 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 CDO28_RS00655 74e451b5824a1d1c4539f48772b73272 611 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 123 295 5.7E-77 T 06-07-2017 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 CDO28_RS27710 8bfd97c9adcf452debb25918be7f3250 593 Pfam PF00999 Sodium/hydrogen exchanger family 15 383 8.0E-71 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDO28_RS27710 8bfd97c9adcf452debb25918be7f3250 593 Gene3D G3DSA:3.40.50.720 402 537 8.3E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27710 8bfd97c9adcf452debb25918be7f3250 593 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 18 292 1.5E-79 T 06-07-2017 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CDO28_RS27710 8bfd97c9adcf452debb25918be7f3250 593 Pfam PF02254 TrkA-N domain 409 522 2.2E-21 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDO28_RS27710 8bfd97c9adcf452debb25918be7f3250 593 SUPERFAMILY SSF51735 408 537 3.32E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19060 ea6a6d0df65ad96fb3400ef5135142c9 212 Pfam PF03358 NADPH-dependent FMN reductase 14 141 5.7E-16 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS19060 ea6a6d0df65ad96fb3400ef5135142c9 212 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 1.3E-95 T 06-07-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CDO28_RS19060 ea6a6d0df65ad96fb3400ef5135142c9 212 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 201 42.119 T 06-07-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CDO28_RS19060 ea6a6d0df65ad96fb3400ef5135142c9 212 Gene3D G3DSA:3.40.50.360 1 200 2.2E-74 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS19060 ea6a6d0df65ad96fb3400ef5135142c9 212 SUPERFAMILY SSF52218 1 198 4.85E-60 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 SUPERFAMILY SSF46785 3 84 1.42E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 Pfam PF03466 LysR substrate binding domain 94 293 2.1E-32 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 Gene3D G3DSA:1.10.10.10 4 88 6.7E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 SUPERFAMILY SSF53850 94 295 1.71E-33 T 06-07-2017 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.7E-14 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 Gene3D G3DSA:3.40.190.10 179 262 8.8E-17 T 06-07-2017 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 Gene3D G3DSA:3.40.190.10 94 178 1.4E-14 T 06-07-2017 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30195 48d90837986b6873af8baf6aa8d5112f 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 SUPERFAMILY SSF51735 325 507 1.16E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 509 606 2.4E-22 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 SUPERFAMILY SSF48179 635 724 1.53E-21 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 SUPERFAMILY SSF48179 508 623 1.62E-23 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Gene3D G3DSA:1.10.1040.10 642 724 1.4E-14 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 214 2.7E-31 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Gene3D G3DSA:3.40.50.720 320 510 2.4E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Gene3D G3DSA:3.90.226.10 1 214 1.6E-63 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Gene3D G3DSA:1.10.1040.10 511 607 1.1E-19 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 SUPERFAMILY SSF52096 1 317 5.77E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS07915 1ac5ab136dd538c079f5059aa8de120c 737 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 328 507 5.2E-58 T 06-07-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 181 1.1E-40 T 06-07-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 SUPERFAMILY SSF53335 1 181 6.19E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 PIRSF PIRSF004553 1 184 9.9E-49 T 06-07-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 Gene3D G3DSA:3.40.50.150 1 183 1.9E-55 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06580 2bd0b30a8367730f7717aef04b34cc46 186 Pfam PF03602 Conserved hypothetical protein 95 1 181 7.4E-49 T 06-07-2017 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 Gene3D G3DSA:3.40.50.300 356 576 2.8E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 Gene3D G3DSA:1.20.1560.10 41 334 1.8E-33 T 06-07-2017 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 SMART SM00382 377 563 8.5E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 Pfam PF00005 ABC transporter 369 515 8.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 SUPERFAMILY SSF90123 37 332 2.09E-36 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 41 576 2.1E-185 T 06-07-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 SUPERFAMILY SSF52540 342 575 3.48E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27195 1f51ccfc503adbb3c58560fdf0b85b7e 589 Pfam PF00664 ABC transporter transmembrane region 43 301 9.5E-10 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS23225 a8d165b9b594497c0f524b9690043a23 272 PIRSF PIRSF034285 1 255 4.5E-101 T 06-07-2017 IPR017026 Inducible mutagenesis protein A CDO28_RS23225 a8d165b9b594497c0f524b9690043a23 272 SUPERFAMILY SSF52540 52 168 2.48E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23225 a8d165b9b594497c0f524b9690043a23 272 Gene3D G3DSA:3.40.50.300 80 167 1.9E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 Gene3D G3DSA:1.10.10.10 6 68 6.1E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 SUPERFAMILY SSF46785 6 115 4.95E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 SUPERFAMILY SSF53850 94 302 2.9E-33 T 06-07-2017 CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 Gene3D G3DSA:3.40.190.10 96 182 4.8E-19 T 06-07-2017 CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 2.6E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 Pfam PF03466 LysR substrate binding domain 92 300 3.1E-27 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24015 06ada1f529ed4a3b4d84143bd7e50038 307 Gene3D G3DSA:3.40.190.10 183 269 2.1E-8 T 06-07-2017 CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.0E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.5E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.5E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.5E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 SUPERFAMILY SSF51735 5 251 3.33E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 4.8E-59 T 06-07-2017 CDO28_RS20840 b839e87a8b6650cb287ba67e7f7724c9 261 Gene3D G3DSA:3.40.50.720 2 252 3.1E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 Gene3D G3DSA:3.40.800.10 3 301 4.2E-89 T 06-07-2017 IPR023696 Ureohydrolase domain CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 SUPERFAMILY SSF52768 3 304 1.57E-87 T 06-07-2017 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 TIGRFAM TIGR01229 rocF_arginase: arginase 6 298 3.1E-93 T 06-07-2017 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 ProSitePatterns PS01053 Arginase family signature. 225 246 - T 06-07-2017 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PIRSF PIRSF036979 1 295 8.2E-34 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 Pfam PF00491 Arginase family 3 295 4.7E-78 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PRINTS PR00116 Arginase signature 173 191 2.7E-46 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PRINTS PR00116 Arginase signature 222 251 2.7E-46 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PRINTS PR00116 Arginase signature 120 147 2.7E-46 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PRINTS PR00116 Arginase signature 257 271 2.7E-46 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS12050 931a9ffd691df3c0dcd783df9c84fec5 307 PRINTS PR00116 Arginase signature 93 108 2.7E-46 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 72 26.957 T 06-07-2017 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 60 - T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 70 2.7E-34 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.6E-9 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 PRINTS PR01249 Ribosomal protein L31 signature 50 68 1.6E-9 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 SUPERFAMILY SSF143800 1 71 1.26E-22 T 06-07-2017 CDO28_RS13245 f8031dd9f931b3c7ef31eb1db02c30b7 73 Pfam PF01197 Ribosomal protein L31 1 69 4.6E-27 T 06-07-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS26545 4ee030d6d83591e5b4aac600c448b272 276 Pfam PF12706 Beta-lactamase superfamily domain 43 242 3.3E-22 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS26545 4ee030d6d83591e5b4aac600c448b272 276 Gene3D G3DSA:3.60.15.10 6 276 8.4E-44 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS26545 4ee030d6d83591e5b4aac600c448b272 276 SUPERFAMILY SSF56281 7 276 1.23E-47 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS26545 4ee030d6d83591e5b4aac600c448b272 276 SMART SM00849 30 217 0.0056 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 SUPERFAMILY SSF50465 329 430 9.11E-32 T 06-07-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 SUPERFAMILY SSF52540 20 249 1.33E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Gene3D G3DSA:3.40.50.300 17 232 2.0E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 430 4.7E-190 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Pfam PF01583 Adenylylsulphate kinase 460 611 3.4E-74 T 06-07-2017 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Gene3D G3DSA:2.40.30.10 239 344 4.1E-21 T 06-07-2017 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 PRINTS PR00315 GTP-binding elongation factor signature 160 169 9.4E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 PRINTS PR00315 GTP-binding elongation factor signature 107 117 9.4E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 PRINTS PR00315 GTP-binding elongation factor signature 123 134 9.4E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 PRINTS PR00315 GTP-binding elongation factor signature 26 39 9.4E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 PRINTS PR00315 GTP-binding elongation factor signature 87 95 9.4E-13 T 06-07-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 442 624 1.4E-74 T 06-07-2017 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 SUPERFAMILY SSF50447 237 325 2.03E-19 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 SUPERFAMILY SSF52540 459 626 1.81E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Pfam PF00009 Elongation factor Tu GTP binding domain 23 210 5.5E-40 T 06-07-2017 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 458 630 38.827 T 06-07-2017 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Gene3D G3DSA:3.40.50.300 438 627 2.8E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 06-07-2017 IPR031157 Tr-type G domain, conserved site CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Gene3D G3DSA:2.40.30.10 345 430 1.2E-10 T 06-07-2017 CDO28_RS23125 9a9b22c85ca918dc75012907bc1183ed 641 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 459 52.65 T 06-07-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 308 2.5E-109 T 06-07-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 2.9E-30 T 06-07-2017 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 2.9E-30 T 06-07-2017 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.9E-30 T 06-07-2017 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.9E-30 T 06-07-2017 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 121 241 5.6E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 242 310 6.9E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 2 120 6.9E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 SUPERFAMILY SSF51905 1 307 5.67E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 297 2.4E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22365 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 308 2.5E-109 T 06-07-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 2.9E-30 T 06-07-2017 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 2.9E-30 T 06-07-2017 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.9E-30 T 06-07-2017 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.9E-30 T 06-07-2017 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 121 241 5.6E-32 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 242 310 6.9E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 Gene3D G3DSA:3.50.50.60 2 120 6.9E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 SUPERFAMILY SSF51905 1 307 5.67E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 297 2.4E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS22495 0770f0007fbf7b87baf89fd905dabc29 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 1.9E-62 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 SUPERFAMILY SSF56003 328 731 4.97E-114 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 PIRSF PIRSF036389 12 737 5.7E-242 T 06-07-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Gene3D G3DSA:3.30.365.10 402 565 4.1E-36 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 SUPERFAMILY SSF56003 27 259 5.23E-38 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 SMART SM01008 226 304 2.0E-20 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Gene3D G3DSA:3.30.365.10 64 192 8.9E-32 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Gene3D G3DSA:3.30.365.10 566 731 4.0E-42 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 330 568 2.5E-37 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 608 686 7.5E-13 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 22 213 5.7E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Gene3D G3DSA:3.90.1170.50 194 274 3.8E-19 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32290 5386ce4fea90372b500ad9e108585e83 737 Gene3D G3DSA:3.30.365.10 327 356 6.0E-5 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS07635 36f3c407846f146aa50e9d4a10458ff5 94 Pfam PF11604 Copper binding periplasmic protein CusF 29 93 4.5E-25 T 06-07-2017 IPR021647 Copper binding periplasmic protein CusF CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 Gene3D G3DSA:3.10.20.30 6 77 8.2E-24 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 Pfam PF01799 [2Fe-2S] binding domain 76 148 6.3E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 SUPERFAMILY SSF47741 87 156 1.31E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 SUPERFAMILY SSF54292 6 91 1.13E-20 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 73 1.8E-4 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS19480 21792f046fbbb4755df9ac2036fa45f0 158 Gene3D G3DSA:1.10.150.120 78 156 1.8E-34 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Gene3D G3DSA:3.30.565.10 47 248 8.3E-76 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 44 683 42.892 T 06-07-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 SMART SM00387 72 218 2.6E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 SUPERFAMILY SSF54211 272 441 5.12E-42 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 SUPERFAMILY SSF56719 443 676 4.18E-74 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Pfam PF01751 Toprim domain 468 568 1.4E-16 T 06-07-2017 IPR006171 Toprim domain CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 111 124 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 535 551 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 155 169 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 553 570 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 76 91 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 469 483 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 320 333 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 573 585 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR00418 DNA topoisomerase II family signature 616 632 1.4E-64 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 72 217 4.5E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 410 424 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 47 57 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 424 444 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 637 649 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 519 528 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 PRINTS PR01159 DNA gyrase subunit B signature 271 293 3.5E-16 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 SUPERFAMILY SSF55874 47 249 1.28E-58 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 612 675 1.1E-23 T 06-07-2017 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Gene3D G3DSA:3.30.230.10 271 444 4.3E-44 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Pfam PF00204 DNA gyrase B 272 440 1.1E-41 T 06-07-2017 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 46 677 7.4E-228 T 06-07-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 ProSitePatterns PS00177 DNA topoisomerase II signature. 471 479 - T 06-07-2017 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 SMART SM00433 76 679 8.0E-288 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS03220 98df445e525b37057b3117a5fedb8a50 686 Gene3D G3DSA:3.40.50.670 453 667 7.0E-78 T 06-07-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS32635 3963ce0018cd9d4b3d683cf2560dc1b1 430 Gene3D G3DSA:3.40.190.10 143 337 4.3E-40 T 06-07-2017 CDO28_RS32635 3963ce0018cd9d4b3d683cf2560dc1b1 430 Pfam PF13416 Bacterial extracellular solute-binding protein 41 362 1.7E-39 T 06-07-2017 CDO28_RS32635 3963ce0018cd9d4b3d683cf2560dc1b1 430 SUPERFAMILY SSF53850 22 420 1.66E-76 T 06-07-2017 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 Gene3D G3DSA:3.40.50.180 154 342 3.0E-78 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 Gene3D G3DSA:3.40.50.2300 4 132 9.2E-30 T 06-07-2017 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 SMART SM00448 5 124 5.8E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 Pfam PF00072 Response regulator receiver domain 7 110 5.2E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 SUPERFAMILY SSF52172 5 129 9.53E-29 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 Pfam PF01339 CheB methylesterase 159 337 4.5E-59 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 PIRSF PIRSF000876 2 346 2.9E-134 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 342 39.155 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS07440 fc0cb73da5a9d5f121256f8951429872 349 SUPERFAMILY SSF52738 156 341 2.09E-68 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 548 61.26 T 06-07-2017 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 251 265 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 80 103 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Pfam PF00732 GMC oxidoreductase 4 292 2.3E-105 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 531 0.0 T 06-07-2017 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 PIRSF PIRSF000137 2 536 1.8E-135 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Gene3D G3DSA:3.50.50.60 462 528 4.6E-117 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Gene3D G3DSA:3.50.50.60 2 124 4.6E-117 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Gene3D G3DSA:3.50.50.60 185 310 4.6E-117 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 SUPERFAMILY SSF51905 468 529 1.02E-87 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 SUPERFAMILY SSF51905 1 285 1.02E-87 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 Pfam PF05199 GMC oxidoreductase 384 520 3.1E-40 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS05815 6269ad535597b9a2bd77d91128e3b03a 549 SUPERFAMILY SSF54373 287 469 9.81E-58 T 06-07-2017 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 Gene3D G3DSA:1.10.560.10 367 519 1.6E-40 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 SUPERFAMILY SSF54849 138 196 8.55E-19 T 06-07-2017 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 PRINTS PR00298 60kDa chaperonin signature 398 419 8.2E-75 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 PRINTS PR00298 60kDa chaperonin signature 83 110 8.2E-75 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 PRINTS PR00298 60kDa chaperonin signature 27 53 8.2E-75 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 PRINTS PR00298 60kDa chaperonin signature 268 291 8.2E-75 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 PRINTS PR00298 60kDa chaperonin signature 350 375 8.2E-75 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 Gene3D G3DSA:1.10.560.10 4 188 4.1E-43 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 1.4E-90 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 Gene3D G3DSA:3.50.7.10 189 366 4.4E-99 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 SUPERFAMILY SSF48592 406 522 2.37E-73 T 06-07-2017 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 SUPERFAMILY SSF48592 7 134 2.37E-73 T 06-07-2017 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 3.7E-251 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 41.238 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21040 e88d80283a279a08e261a12aaaa0670b 544 SUPERFAMILY SSF52029 184 376 6.02E-83 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS14215 058fc53ab6e9c10094ea8a03c0a7e73e 526 Gene3D G3DSA:3.10.105.10 274 495 3.1E-44 T 06-07-2017 CDO28_RS14215 058fc53ab6e9c10094ea8a03c0a7e73e 526 PIRSF PIRSF002741 1 524 9.1E-80 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS14215 058fc53ab6e9c10094ea8a03c0a7e73e 526 SUPERFAMILY SSF53850 29 521 1.07E-117 T 06-07-2017 CDO28_RS14215 058fc53ab6e9c10094ea8a03c0a7e73e 526 Gene3D G3DSA:3.90.76.10 39 200 7.0E-37 T 06-07-2017 CDO28_RS14215 058fc53ab6e9c10094ea8a03c0a7e73e 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 438 3.8E-81 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 Gene3D G3DSA:3.40.50.720 2 249 3.6E-81 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.4E-65 T 06-07-2017 CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 SUPERFAMILY SSF51735 1 250 2.06E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02205 a3c0e50cbd480dd399638d98444d4cce 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.3E-45 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23050 4e456d6b7d53a11c65394ad278854763 81 ProDom PD594998 EXOPOLYSACCHARIDE REPRESSOR PLASMID PRODUCTION TRANSMEMBRANE MEMBRANE NODULATION SYNTHESIS SYRA PSIA 4 58 8.0E-14 T 06-07-2017 IPR024239 Exopolysaccharide production repressor CDO28_RS23050 4e456d6b7d53a11c65394ad278854763 81 Pfam PF11089 Exopolysaccharide production repressor 18 55 5.0E-16 T 06-07-2017 IPR024239 Exopolysaccharide production repressor CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 428 3.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 3.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 3.0E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 330 2.1E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 SMART SM00388 261 330 2.2E-24 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 Gene3D G3DSA:1.10.287.130 253 316 1.3E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 SMART SM00387 376 489 2.4E-30 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 SUPERFAMILY SSF55874 319 486 5.11E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 487 2.0E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 SUPERFAMILY SSF47384 250 331 6.67E-22 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS18690 f27d0dc78cc1b8f83a9262806d71ae4f 511 Gene3D G3DSA:3.30.565.10 317 486 2.3E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23630 a5ff73046bcde4610d2095cd134e5f91 279 SMART SM00849 53 249 3.1E-15 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23630 a5ff73046bcde4610d2095cd134e5f91 279 Gene3D G3DSA:3.60.15.10 8 270 7.7E-35 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23630 a5ff73046bcde4610d2095cd134e5f91 279 SUPERFAMILY SSF56281 49 257 1.97E-29 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23630 a5ff73046bcde4610d2095cd134e5f91 279 Pfam PF00753 Metallo-beta-lactamase superfamily 54 242 8.5E-17 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 SUPERFAMILY SSF46785 8 79 1.36E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 Gene3D G3DSA:1.10.10.10 16 79 7.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 SMART SM00345 16 75 6.1E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 Gene3D G3DSA:1.20.120.530 92 228 2.0E-27 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 SMART SM00895 97 223 1.4E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 SUPERFAMILY SSF48008 94 228 1.02E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 Pfam PF07729 FCD domain 99 221 2.7E-22 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 7.9E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 7.9E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31345 4e9eb6dc2671c851fb3a16008f501c21 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 75 8.2E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30605 223163fdfcdf7a0e5a600b0fbdbdf3d2 305 Gene3D G3DSA:2.30.110.10 173 271 4.9E-9 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS30605 223163fdfcdf7a0e5a600b0fbdbdf3d2 305 SUPERFAMILY SSF50475 174 291 1.83E-10 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS30605 223163fdfcdf7a0e5a600b0fbdbdf3d2 305 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 173 269 1.5E-14 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Gene3D G3DSA:1.10.540.10 11 122 4.1E-25 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 247 376 4.0E-17 T 06-07-2017 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 SUPERFAMILY SSF56645 29 230 1.01E-43 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 SUPERFAMILY SSF47203 232 398 1.08E-22 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 PIRSF PIRSF016578 9 388 3.2E-35 T 06-07-2017 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 26 127 6.3E-11 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Gene3D G3DSA:1.20.140.10 222 398 6.6E-42 T 06-07-2017 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 16 399 5.7E-154 T 06-07-2017 IPR023922 Sulphate-starvation-induced SfnB CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 221 9.0E-9 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS28350 d1c4d4649999290f033505cc726be662 403 Gene3D G3DSA:2.40.110.10 146 221 2.7E-21 T 06-07-2017 CDO28_RS32985 6d579636894f74671c2701924684f301 536 SUPERFAMILY SSF51905 10 294 3.4E-89 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32985 6d579636894f74671c2701924684f301 536 SUPERFAMILY SSF51905 478 535 3.4E-89 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32985 6d579636894f74671c2701924684f301 536 SUPERFAMILY SSF54373 296 479 5.59E-53 T 06-07-2017 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Gene3D G3DSA:3.50.50.60 10 132 1.6E-123 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Gene3D G3DSA:3.50.50.60 479 535 1.6E-123 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Gene3D G3DSA:3.50.50.60 193 319 1.6E-123 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Gene3D G3DSA:3.30.410.10 330 478 5.6E-4 T 06-07-2017 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Pfam PF05199 GMC oxidoreductase 393 529 6.4E-38 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS32985 6d579636894f74671c2701924684f301 536 PIRSF PIRSF000137 1 536 2.6E-144 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS32985 6d579636894f74671c2701924684f301 536 Pfam PF00732 GMC oxidoreductase 11 301 6.4E-83 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS32985 6d579636894f74671c2701924684f301 536 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 260 274 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS31185 e0265dd08c2c6dcf8419b50d8a007442 366 Pfam PF00534 Glycosyl transferases group 1 174 307 1.9E-22 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS31185 e0265dd08c2c6dcf8419b50d8a007442 366 SUPERFAMILY SSF53756 9 342 2.67E-56 T 06-07-2017 CDO28_RS31185 e0265dd08c2c6dcf8419b50d8a007442 366 Gene3D G3DSA:3.40.50.2000 167 305 2.2E-19 T 06-07-2017 CDO28_RS31185 e0265dd08c2c6dcf8419b50d8a007442 366 Pfam PF13439 Glycosyltransferase Family 4 18 119 5.2E-13 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 Gene3D G3DSA:1.10.10.10 12 87 5.3E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 9.8E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 Gene3D G3DSA:3.40.190.10 100 207 5.2E-9 T 06-07-2017 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 SUPERFAMILY SSF53850 99 306 1.19E-24 T 06-07-2017 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 3.7E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 3.7E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 3.7E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 SUPERFAMILY SSF46785 11 87 1.09E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 Pfam PF03466 LysR substrate binding domain 99 306 1.4E-18 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS26975 596835d3d4c64ce420f1cbdb854cc047 317 Gene3D G3DSA:3.40.190.10 222 273 2.3E-5 T 06-07-2017 CDO28_RS06570 cec2367d629034bf9961af363bf687ad 128 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 128 9.906 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS06570 cec2367d629034bf9961af363bf687ad 128 Gene3D G3DSA:3.40.50.1010 1 106 1.6E-7 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS06570 cec2367d629034bf9961af363bf687ad 128 Pfam PF01850 PIN domain 1 124 1.2E-14 T 06-07-2017 IPR002716 PIN domain CDO28_RS06570 cec2367d629034bf9961af363bf687ad 128 SUPERFAMILY SSF88723 1 126 3.6E-18 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 47 8.2E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 Gene3D G3DSA:3.40.50.2300 53 173 5.8E-28 T 06-07-2017 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 SUPERFAMILY SSF47413 2 57 3.13E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 Gene3D G3DSA:1.10.260.40 1 52 8.1E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 SMART SM00354 1 70 3.8E-15 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 Gene3D G3DSA:3.40.50.2300 174 311 2.7E-38 T 06-07-2017 CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 SUPERFAMILY SSF53822 66 336 1.69E-53 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32170 7d4c58c412187f524219982baeea014e 338 Pfam PF13377 Periplasmic binding protein-like domain 169 332 7.3E-29 T 06-07-2017 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 11 82 21.153 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 SUPERFAMILY SSF46911 10 81 2.62E-27 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 TIGRFAM TIGR00165 S18: ribosomal protein bS18 14 81 1.4E-29 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 30 80 4.0E-22 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 Pfam PF01084 Ribosomal protein S18 29 77 9.4E-25 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 ProSitePatterns PS00057 Ribosomal protein S18 signature. 30 53 - T 06-07-2017 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 PRINTS PR00974 Ribosomal protein S18 family signature 69 79 4.6E-18 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 PRINTS PR00974 Ribosomal protein S18 family signature 37 47 4.6E-18 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 PRINTS PR00974 Ribosomal protein S18 family signature 47 54 4.6E-18 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 PRINTS PR00974 Ribosomal protein S18 family signature 55 69 4.6E-18 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04820 88712120e8a6c9b750357209a8d1c535 82 Gene3D G3DSA:4.10.640.10 17 81 3.7E-31 T 06-07-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 SMART SM00919 176 413 1.9E-130 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Gene3D G3DSA:3.40.50.720 174 458 1.3E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Pfam PF01515 Phosphate acetyl/butaryl transferase 442 763 4.9E-109 T 06-07-2017 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Gene3D G3DSA:3.40.50.10750 582 738 1.0E-48 T 06-07-2017 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Pfam PF00390 Malic enzyme, N-terminal domain 32 164 1.5E-28 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 SUPERFAMILY SSF53659 442 765 2.96E-85 T 06-07-2017 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 SMART SM01274 31 164 1.3E-79 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 ProSitePatterns PS00331 Malic enzymes signature. 172 188 - T 06-07-2017 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Gene3D G3DSA:3.40.50.10380 20 173 3.7E-51 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 PIRSF PIRSF036684 12 770 0.0 T 06-07-2017 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 SUPERFAMILY SSF53223 23 174 5.25E-54 T 06-07-2017 CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 SUPERFAMILY SSF51735 176 453 4.44E-84 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00070 1c4868bc3bbfd9b0d09e5a295a565cd4 770 Pfam PF03949 Malic enzyme, NAD binding domain 178 370 1.0E-19 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 393 52.535 T 06-07-2017 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 7 395 1.2E-194 T 06-07-2017 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 SUPERFAMILY SSF53383 4 393 2.42E-119 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS15640 88794578a6275e757337056872e22e7f 395 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 239 248 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 Gene3D G3DSA:3.40.640.10 62 276 3.0E-86 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 Gene3D G3DSA:3.90.1150.10 277 391 1.5E-31 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS15640 88794578a6275e757337056872e22e7f 395 Pfam PF00155 Aminotransferase class I and II 44 383 2.1E-66 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS27255 1e40f1571d044b32348010cccfee500c 272 Gene3D G3DSA:3.40.50.1220 11 30 1.3E-5 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS27255 1e40f1571d044b32348010cccfee500c 272 Gene3D G3DSA:3.40.50.1220 93 199 1.3E-5 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS27255 1e40f1571d044b32348010cccfee500c 272 PIRSF PIRSF033541 1 267 8.4E-141 T 06-07-2017 IPR014583 Uncharacterised protein family, Sir2-like CDO28_RS27255 1e40f1571d044b32348010cccfee500c 272 SUPERFAMILY SSF52467 2 238 4.67E-20 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS27255 1e40f1571d044b32348010cccfee500c 272 Pfam PF13289 SIR2-like domain 106 247 1.6E-26 T 06-07-2017 CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 3.9E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.9E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 3.9E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.9E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 3.9E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 SUPERFAMILY SSF51735 10 255 9.2E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 Pfam PF00106 short chain dehydrogenase 14 197 5.2E-47 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 8.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 8.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 8.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS01745 c168fe1c8c5a6d4a00a3d70d4fdd673a 282 Gene3D G3DSA:3.40.50.720 14 253 1.7E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 Pfam PF00043 Glutathione S-transferase, C-terminal domain 128 223 1.2E-13 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 Gene3D G3DSA:1.20.1050.10 102 227 1.1E-42 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 SUPERFAMILY SSF47616 96 230 9.33E-34 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 Gene3D G3DSA:3.40.30.10 10 101 1.6E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 SUPERFAMILY SSF52833 11 104 4.49E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS06645 1d3fb4beb26ae0bc6f064b1de9acf945 235 Pfam PF02798 Glutathione S-transferase, N-terminal domain 22 99 1.2E-15 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 15 129 6.0E-40 T 06-07-2017 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 SUPERFAMILY SSF49472 10 129 1.16E-43 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 PRINTS PR00189 Transthyretin signature 107 129 5.3E-7 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 PRINTS PR00189 Transthyretin signature 15 35 5.3E-7 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 Pfam PF00576 HIUase/Transthyretin family 16 128 1.4E-35 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 ProSitePatterns PS00769 Transthyretin signature 2. 112 124 - T 06-07-2017 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 Gene3D G3DSA:2.60.40.180 12 129 6.1E-38 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS28605 680e79c5e02b715c8ee0c7c1138c1785 129 ProSitePatterns PS00768 Transthyretin signature 1. 19 34 - T 06-07-2017 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SMART SM00490 613 699 4.1E-18 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:4.10.860.10 779 820 7.8E-17 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:3.40.50.300 161 242 1.6E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:3.40.50.300 431 491 1.6E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:3.40.50.300 541 562 1.6E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Hamap MF_00204 UvrABC system protein B [uvrB]. 156 818 41.756 T 06-07-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 159 816 0.0 T 06-07-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SUPERFAMILY SSF46600 777 817 5.23E-11 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SUPERFAMILY SSF52540 160 566 3.56E-132 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:3.40.50.300 572 734 1.2E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Pfam PF04851 Type III restriction enzyme, res subunit 168 292 3.2E-11 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Pfam PF12344 Ultra-violet resistance protein B 705 746 3.5E-22 T 06-07-2017 IPR024759 UvrB, YAD/RRR-motif-containing domain CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Gene3D G3DSA:3.30.2060.10 314 386 7.4E-12 T 06-07-2017 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Pfam PF00271 Helicase conserved C-terminal domain 592 698 3.1E-18 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SUPERFAMILY SSF52540 186 235 1.37E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SUPERFAMILY SSF52540 612 734 1.37E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 Pfam PF02151 UvrB/uvrC motif 786 817 9.3E-10 T 06-07-2017 IPR001943 UVR domain GO:0005515 CDO28_RS18595 5d67acd8ba7dd12bdbfcfc683dd6dcda 985 SMART SM00487 162 579 8.0E-25 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS07920 ab69bb5e5801fa236b940e8d0eb21287 157 Gene3D G3DSA:3.30.530.20 2 151 9.9E-28 T 06-07-2017 IPR023393 START-like domain CDO28_RS07920 ab69bb5e5801fa236b940e8d0eb21287 157 SUPERFAMILY SSF55961 6 151 7.34E-31 T 06-07-2017 CDO28_RS07920 ab69bb5e5801fa236b940e8d0eb21287 157 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 150 2.8E-24 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2817 2845 7.3E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2699 2727 3.8E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2109 2137 1.2E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2581 2609 8.8E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1637 1664 2.4E-4 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1755 1783 3.4E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 3169 3220 2.3E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2345 2373 7.1E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1873 1901 7.6E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 667 708 2.4E-9 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2935 2962 4.2E-4 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1519 1547 5.6E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2227 2255 3.0E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 3051 3075 3.0E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1990 2019 6.1E-6 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 2463 2491 1.0E-5 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Pfam PF01345 Domain of unknown function DUF11 3152 3215 7.5E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Pfam PF01345 Domain of unknown function DUF11 653 704 1.8E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:4.10.1080.10 2101 2108 2.1E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:4.10.1080.10 2334 2346 2.1E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:4.10.1080.10 2218 2228 2.1E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:4.10.1080.10 2167 2183 2.1E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:4.10.1080.10 2454 2466 2.1E-6 T 06-07-2017 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 1872 1940 6.1E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 1518 1589 1.4E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2109 2166 1.9E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2816 2887 3.5E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2698 2768 2.3E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2580 2650 1.2E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2347 2405 4.5E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2229 2294 3.4E-6 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 1754 1822 1.8E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 1991 2058 3.3E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 2467 2531 2.1E-4 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 Gene3D G3DSA:2.60.40.360 1636 1709 3.0E-7 T 06-07-2017 IPR008962 PapD-like CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SUPERFAMILY SSF101898 460 674 7.59E-9 T 06-07-2017 CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2595 2619 1900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2713 2737 2000.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2123 2147 1900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 1887 1911 1300.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2477 2501 5600.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2005 2029 2500.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 1533 1557 1400.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2949 2973 5100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2359 2383 2200.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 1769 1793 1700.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 1651 1675 3000.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2831 2855 6900.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS34120 a55f4882576ca8b70fa6d6c6f4faacb0 3484 SMART SM00710 2241 2265 3100.0 T 06-07-2017 IPR006626 Parallel beta-helix repeat CDO28_RS32930 b4f2172dc695dadbfa7349dc3e0a1698 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 314 2.7E-28 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.5E-19 T 06-07-2017 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 Gene3D G3DSA:1.10.10.10 2 53 5.4E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 9.1E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 9.1E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 9.1E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 8.5E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 SUPERFAMILY SSF46785 1 91 5.6E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 SMART SM00344 1 110 5.8E-47 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 Gene3D G3DSA:3.30.70.920 54 137 1.1E-31 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS18705 eed6943a14107f61b903b7b2aa9ddd9d 162 SUPERFAMILY SSF54909 63 149 3.62E-21 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 121 7.9E-17 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 SUPERFAMILY SSF55347 129 210 5.89E-22 T 06-07-2017 CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 SUPERFAMILY SSF55347 242 300 5.89E-22 T 06-07-2017 CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 SUPERFAMILY SSF51735 2 151 1.58E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 Gene3D G3DSA:3.40.50.720 1 140 5.3E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 Gene3D G3DSA:3.30.360.10 141 370 1.0E-29 T 06-07-2017 CDO28_RS26815 eb1af1c9044b7f13375a4d8fa98031ca 386 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 140 205 4.7E-4 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS28960 014859537f66753477e0deda12a0283f 498 Pfam PF00005 ABC transporter 21 170 3.6E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28960 014859537f66753477e0deda12a0283f 498 Pfam PF00005 ABC transporter 270 424 3.3E-11 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28960 014859537f66753477e0deda12a0283f 498 SUPERFAMILY SSF52540 269 484 6.56E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28960 014859537f66753477e0deda12a0283f 498 SUPERFAMILY SSF52540 6 231 1.94E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28960 014859537f66753477e0deda12a0283f 498 Gene3D G3DSA:3.40.50.300 5 235 2.7E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28960 014859537f66753477e0deda12a0283f 498 Gene3D G3DSA:3.40.50.300 269 487 1.7E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28960 014859537f66753477e0deda12a0283f 498 SMART SM00382 30 218 2.3E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28960 014859537f66753477e0deda12a0283f 498 SMART SM00382 278 473 0.32 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28960 014859537f66753477e0deda12a0283f 498 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 3.2E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 3.2E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 2.2E-17 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 Gene3D G3DSA:1.10.357.10 6 186 7.3E-33 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 SUPERFAMILY SSF48498 80 183 1.72E-11 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS15850 be3ee26391566a3c6aa7bbf02ed47afc 198 SUPERFAMILY SSF46689 4 76 8.98E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 Gene3D G3DSA:3.20.20.140 66 373 3.9E-125 T 06-07-2017 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 Gene3D G3DSA:2.30.40.10 374 460 7.4E-17 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 SUPERFAMILY SSF51338 1 71 8.21E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 452 1.5E-182 T 06-07-2017 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 SUPERFAMILY SSF51338 346 456 7.82E-37 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 SUPERFAMILY SSF51556 51 380 3.89E-112 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 Gene3D G3DSA:2.30.40.10 3 65 3.5E-31 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14935 536ad7fd0b031291afdbbaef11684164 484 Pfam PF01979 Amidohydrolase family 47 419 9.9E-26 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Gene3D G3DSA:3.90.199.10 350 415 1.7E-105 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Gene3D G3DSA:3.90.199.10 38 251 1.7E-105 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 SUPERFAMILY SSF101904 520 755 3.01E-51 T 06-07-2017 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 39 478 1.0E-135 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 SMART SM00434 18 478 1.2E-224 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Gene3D G3DSA:2.120.10.90 519 752 8.4E-29 T 06-07-2017 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 11 757 33.46 T 06-07-2017 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 17 756 4.7E-266 T 06-07-2017 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Gene3D G3DSA:3.30.1360.40 252 348 8.6E-28 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 620 659 0.12 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 665 702 2.1E-5 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 567 613 0.17 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS04495 67f2849416940d3ce25ea89f28f6a59e 758 SUPERFAMILY SSF56719 38 495 1.44E-152 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 SMART SM00354 5 75 8.5E-21 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 Pfam PF13377 Periplasmic binding protein-like domain 165 333 7.0E-26 T 06-07-2017 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 SUPERFAMILY SSF47413 7 63 3.44E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 Gene3D G3DSA:3.40.50.2300 58 169 3.1E-33 T 06-07-2017 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 Gene3D G3DSA:1.10.260.40 7 57 2.8E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 Gene3D G3DSA:3.40.50.2300 170 302 1.4E-31 T 06-07-2017 CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 SUPERFAMILY SSF53822 65 338 5.39E-51 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS26625 f71b3e97afa6e214fd02c17d2b882860 356 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 52 3.3E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS13025 03e9afbec424c694436c15876437e73b 283 Gene3D G3DSA:1.10.3720.10 77 275 3.9E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13025 03e9afbec424c694436c15876437e73b 283 SUPERFAMILY SSF161098 78 265 3.4E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13025 03e9afbec424c694436c15876437e73b 283 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 13 60 5.6E-7 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS13025 03e9afbec424c694436c15876437e73b 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 275 2.4E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 4.3E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 Gene3D G3DSA:3.40.190.10 94 179 6.1E-22 T 06-07-2017 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 Gene3D G3DSA:1.10.10.10 4 85 3.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 Gene3D G3DSA:3.40.190.10 180 258 1.4E-9 T 06-07-2017 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 SUPERFAMILY SSF46785 4 84 5.6E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 Pfam PF03466 LysR substrate binding domain 89 292 1.3E-23 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 SUPERFAMILY SSF53850 92 295 7.96E-28 T 06-07-2017 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.7E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.7E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00820 9cd821b6519f7c5bb8cbf84351362db0 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.7E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 SUPERFAMILY SSF51161 1 256 1.14E-68 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 259 1.2E-17 T 06-07-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Gene3D G3DSA:1.20.1180.10 197 259 1.7E-12 T 06-07-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 263 42.969 T 06-07-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 PIRSF PIRSF000456 4 269 1.0E-96 T 06-07-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 6.5E-5 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 50 9.1E-9 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 Gene3D G3DSA:2.160.10.10 4 192 6.7E-44 T 06-07-2017 CDO28_RS02845 1fe3ba1141898122b4883ec227fc458f 270 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 261 2.2E-105 T 06-07-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 CDO28_RS13615 1c109a4d622286762de006a07604c2b0 499 SUPERFAMILY SSF48557 8 492 6.12E-150 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS13615 1c109a4d622286762de006a07604c2b0 499 Pfam PF00221 Aromatic amino acid lyase 11 467 2.6E-147 T 06-07-2017 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 CDO28_RS13615 1c109a4d622286762de006a07604c2b0 499 Gene3D G3DSA:1.10.275.10 6 193 2.0E-54 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS13615 1c109a4d622286762de006a07604c2b0 499 Gene3D G3DSA:1.20.200.10 194 492 2.4E-92 T 06-07-2017 CDO28_RS15165 1bc702b0ab3c989652d8996a6d2c520b 255 Pfam PF00005 ABC transporter 20 167 1.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15165 1bc702b0ab3c989652d8996a6d2c520b 255 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15165 1bc702b0ab3c989652d8996a6d2c520b 255 SMART SM00382 29 216 3.1E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15165 1bc702b0ab3c989652d8996a6d2c520b 255 Gene3D G3DSA:3.40.50.300 4 238 2.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15165 1bc702b0ab3c989652d8996a6d2c520b 255 SUPERFAMILY SSF52540 5 227 7.14E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33800 e03e2fedbbec2203f7ce9ea755b5decf 83 Pfam PF00550 Phosphopantetheine attachment site 15 76 1.2E-4 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS33800 e03e2fedbbec2203f7ce9ea755b5decf 83 Gene3D G3DSA:1.10.1200.10 8 81 5.8E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS33800 e03e2fedbbec2203f7ce9ea755b5decf 83 SUPERFAMILY SSF47336 5 79 1.23E-10 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS15715 e03e2fedbbec2203f7ce9ea755b5decf 83 Pfam PF00550 Phosphopantetheine attachment site 15 76 1.2E-4 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS15715 e03e2fedbbec2203f7ce9ea755b5decf 83 Gene3D G3DSA:1.10.1200.10 8 81 5.8E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS15715 e03e2fedbbec2203f7ce9ea755b5decf 83 SUPERFAMILY SSF47336 5 79 1.23E-10 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS25365 5908c81dfad53cef1c3858bdd5a8688b 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 259 1.2E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25365 5908c81dfad53cef1c3858bdd5a8688b 260 SUPERFAMILY SSF161098 5 248 9.35E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25365 5908c81dfad53cef1c3858bdd5a8688b 260 Gene3D G3DSA:1.10.3720.10 7 252 1.0E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30390 0c826ec3d0e786f90c7174f38f4b42aa 201 Pfam PF02581 Thiamine monophosphate synthase/TENI 11 180 1.6E-52 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS30390 0c826ec3d0e786f90c7174f38f4b42aa 201 Gene3D G3DSA:3.20.20.70 6 199 2.7E-59 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS30390 0c826ec3d0e786f90c7174f38f4b42aa 201 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 12 191 2.3E-48 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS30390 0c826ec3d0e786f90c7174f38f4b42aa 201 SUPERFAMILY SSF51391 4 198 1.57E-62 T 06-07-2017 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 Gene3D G3DSA:3.40.190.10 181 264 7.3E-15 T 06-07-2017 CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 SUPERFAMILY SSF53850 92 294 2.9E-39 T 06-07-2017 CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 SUPERFAMILY SSF46785 5 114 2.73E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 Gene3D G3DSA:1.10.10.10 1 84 4.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.4E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 Gene3D G3DSA:3.40.190.10 94 180 8.2E-20 T 06-07-2017 CDO28_RS09110 c654ecfa15020da40cab52ba6e2a9e1d 296 Pfam PF03466 LysR substrate binding domain 90 294 1.7E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS13440 eb3ea047f251b5bd9dacde4da1eebe2a 453 Pfam PF01171 PP-loop family 22 213 4.4E-46 T 06-07-2017 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CDO28_RS13440 eb3ea047f251b5bd9dacde4da1eebe2a 453 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 215 4.0E-45 T 06-07-2017 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDO28_RS13440 eb3ea047f251b5bd9dacde4da1eebe2a 453 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 13 315 19.962 T 06-07-2017 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDO28_RS13440 eb3ea047f251b5bd9dacde4da1eebe2a 453 Gene3D G3DSA:3.40.50.620 17 194 1.4E-17 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13440 eb3ea047f251b5bd9dacde4da1eebe2a 453 SUPERFAMILY SSF52402 13 215 1.04E-45 T 06-07-2017 CDO28_RS07595 6c264ff3e03760f64d477c26a499ce8a 159 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 15 104 9.9E-13 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS07595 6c264ff3e03760f64d477c26a499ce8a 159 SUPERFAMILY SSF52788 13 145 5.36E-31 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS07595 6c264ff3e03760f64d477c26a499ce8a 159 SMART SM00226 13 148 1.5E-8 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS07595 6c264ff3e03760f64d477c26a499ce8a 159 Gene3D G3DSA:3.40.50.270 12 144 2.3E-26 T 06-07-2017 CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 Pfam PF00924 Mechanosensitive ion channel 210 411 4.6E-47 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 SUPERFAMILY SSF50182 253 318 6.54E-14 T 06-07-2017 IPR010920 LSM domain CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 SUPERFAMILY SSF82689 321 421 1.44E-25 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 Gene3D G3DSA:3.30.70.100 322 409 6.0E-20 T 06-07-2017 CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 SUPERFAMILY SSF82861 169 251 4.45E-12 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDO28_RS24890 911369a3c9141df01bd9bd6259f1605c 432 Gene3D G3DSA:2.30.30.60 269 317 1.6E-12 T 06-07-2017 CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 SUPERFAMILY SSF53850 89 299 1.99E-39 T 06-07-2017 CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 SUPERFAMILY SSF46785 4 88 1.09E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 Gene3D G3DSA:1.10.10.10 4 83 4.5E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.2E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 Pfam PF03466 LysR substrate binding domain 88 295 1.2E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 Gene3D G3DSA:3.40.190.10 175 262 8.2E-14 T 06-07-2017 CDO28_RS26720 1600d208ca5aecfbb2065c3d26d6aa02 315 Gene3D G3DSA:3.40.190.10 92 174 5.0E-21 T 06-07-2017 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 Gene3D G3DSA:1.10.10.60 271 318 7.9E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 270 312 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 SUPERFAMILY SSF46689 269 319 1.12E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 SMART SM00342 233 316 3.9E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 Gene3D G3DSA:3.40.50.880 10 200 2.8E-28 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 Gene3D G3DSA:1.10.10.60 216 270 2.1E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 SUPERFAMILY SSF46689 216 266 4.66E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 218 262 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 SUPERFAMILY SSF52317 10 196 2.47E-31 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS16015 c9ae8a6dbc58487c645f5c3c1a7089e8 323 Pfam PF12833 Helix-turn-helix domain 239 318 1.0E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS01850 49d39821e7a682893864371bbd3936fd 120 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 41 112 3.5E-27 T 06-07-2017 IPR018753 Azospirillum phage Cd, Gp10 CDO28_RS01850 49d39821e7a682893864371bbd3936fd 120 Gene3D G3DSA:1.10.1030.10 47 107 7.9E-4 T 06-07-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 Gene3D G3DSA:3.40.50.700 56 183 4.1E-33 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 SUPERFAMILY SSF56770 43 187 1.7E-65 T 06-07-2017 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 45 186 1.2E-72 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 152 168 - T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 34 185 39.353 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04130 4df9a8d63a6af7ae88bdb29b94959b8a 192 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 71 178 7.6E-24 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS25140 1c3eda70e4ca058a0e7135907931665c 337 Pfam PF12710 haloacid dehalogenase-like hydrolase 70 274 2.2E-24 T 06-07-2017 CDO28_RS25140 1c3eda70e4ca058a0e7135907931665c 337 Gene3D G3DSA:3.40.50.1000 166 304 4.3E-17 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25140 1c3eda70e4ca058a0e7135907931665c 337 Gene3D G3DSA:3.40.50.1000 68 83 4.3E-17 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25140 1c3eda70e4ca058a0e7135907931665c 337 SUPERFAMILY SSF56784 67 312 2.21E-29 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 Gene3D G3DSA:3.90.1030.10 1 117 3.0E-51 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 SUPERFAMILY SSF64263 1 119 3.14E-50 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.642 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 Pfam PF01196 Ribosomal protein L17 20 116 1.1E-36 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 3.7E-44 T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03505 554c40e2741e06dc822424289be3bf2f 141 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 06-07-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 SUPERFAMILY SSF46785 5 84 2.64E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 Pfam PF03466 LysR substrate binding domain 92 288 2.7E-23 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 Gene3D G3DSA:3.40.190.10 94 176 1.8E-14 T 06-07-2017 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 Gene3D G3DSA:3.40.190.10 177 259 2.7E-11 T 06-07-2017 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 SUPERFAMILY SSF53850 94 292 6.15E-25 T 06-07-2017 CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 Gene3D G3DSA:1.10.10.10 5 84 2.4E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24620 c46000d45d3b693526b5591257ec1d25 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.1E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 Pfam PF00551 Formyl transferase 16 176 3.7E-20 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 Pfam PF02911 Formyl transferase, C-terminal domain 203 277 2.3E-15 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 SUPERFAMILY SSF53328 1 203 9.55E-43 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 SUPERFAMILY SSF50486 203 304 1.57E-19 T 06-07-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 Gene3D G3DSA:3.40.50.170 1 202 6.1E-44 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS26455 606548f1f648193eea17f91a04ab56b2 312 Gene3D G3DSA:3.10.25.10 205 277 2.9E-16 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 Gene3D G3DSA:1.10.3720.10 167 389 7.5E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 192 381 5.2E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 487 669 2.3E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 SUPERFAMILY SSF161098 408 664 2.52E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 SUPERFAMILY SSF161098 127 389 1.74E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17030 0aa4b37c3871d2293fd33ff34b36e6a8 678 Gene3D G3DSA:1.10.3720.10 414 662 4.0E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03110 fd099b3951dea8ab9fc0ae92ac1309d0 165 SUPERFAMILY SSF142433 2 161 1.44E-54 T 06-07-2017 IPR008136 CinA, C-terminal CDO28_RS03110 fd099b3951dea8ab9fc0ae92ac1309d0 165 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 158 5.7E-46 T 06-07-2017 IPR008136 CinA, C-terminal CDO28_RS03110 fd099b3951dea8ab9fc0ae92ac1309d0 165 Gene3D G3DSA:3.90.950.20 3 161 1.2E-53 T 06-07-2017 IPR008136 CinA, C-terminal CDO28_RS03110 fd099b3951dea8ab9fc0ae92ac1309d0 165 Pfam PF02464 Competence-damaged protein 8 160 3.9E-53 T 06-07-2017 IPR008136 CinA, C-terminal CDO28_RS23950 86b16daf930b977c1e537c0b3828a10d 473 SUPERFAMILY SSF75304 7 467 7.72E-131 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS23950 86b16daf930b977c1e537c0b3828a10d 473 Gene3D G3DSA:3.90.1300.10 6 468 6.8E-135 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS23950 86b16daf930b977c1e537c0b3828a10d 473 Pfam PF01425 Amidase 29 448 3.0E-108 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 Pfam PF00005 ABC transporter 41 195 4.6E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 Gene3D G3DSA:3.40.50.300 27 265 1.7E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 SMART SM00382 48 242 7.9E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 SUPERFAMILY SSF52540 27 258 2.18E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS08015 b5d9c5fe6e3876aa00d110285477cfec 271 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 27 271 4.9E-124 T 06-07-2017 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 SUPERFAMILY SSF56655 5 328 3.54E-91 T 06-07-2017 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PIRSF PIRSF500210 1 333 9.3E-117 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 330 41.253 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 29 56 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 176 199 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 145 168 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 202 229 4.6E-38 T 06-07-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 270 282 - T 06-07-2017 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 Gene3D G3DSA:3.30.540.10 5 188 3.3E-50 T 06-07-2017 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 18 188 1.9E-44 T 06-07-2017 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 Gene3D G3DSA:3.40.190.80 195 328 1.4E-49 T 06-07-2017 CDO28_RS31585 545b25ba2321746c813027f04ea4e644 349 PIRSF PIRSF000904 1 334 2.4E-112 T 06-07-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDO28_RS19640 8ba573a4d9d1114e46d4cee67529ae86 258 SUPERFAMILY SSF53474 23 253 5.67E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19640 8ba573a4d9d1114e46d4cee67529ae86 258 Gene3D G3DSA:3.40.50.1820 26 255 1.1E-40 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19640 8ba573a4d9d1114e46d4cee67529ae86 258 Pfam PF12697 Alpha/beta hydrolase family 29 248 7.8E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS11005 6e2b84bd85ad123d9b9b0ce4aff582ab 262 SUPERFAMILY SSF53955 83 248 2.25E-49 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS11005 6e2b84bd85ad123d9b9b0ce4aff582ab 262 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 46 252 3.9E-56 T 06-07-2017 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 CDO28_RS11005 6e2b84bd85ad123d9b9b0ce4aff582ab 262 Gene3D G3DSA:1.10.3810.10 85 231 1.8E-48 T 06-07-2017 CDO28_RS11005 6e2b84bd85ad123d9b9b0ce4aff582ab 262 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 39 256 38.919 T 06-07-2017 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 CDO28_RS11005 6e2b84bd85ad123d9b9b0ce4aff582ab 262 Pfam PF00912 Transglycosylase 85 246 7.4E-46 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS20390 8e0b22f7d5d40c561254b572a4e60db7 294 Gene3D G3DSA:1.10.3720.10 61 288 9.8E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20390 8e0b22f7d5d40c561254b572a4e60db7 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 283 7.5E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20390 8e0b22f7d5d40c561254b572a4e60db7 294 SUPERFAMILY SSF161098 55 278 4.19E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10190 80efd9c85ed0e0d65063b32df92d8f65 177 Pfam PF04268 Sarcosine oxidase, gamma subunit family 32 171 6.7E-39 T 06-07-2017 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS10190 80efd9c85ed0e0d65063b32df92d8f65 177 SUPERFAMILY SSF103025 62 177 3.92E-12 T 06-07-2017 CDO28_RS33600 b42bc26f7f03af06148d435363a6976a 502 Pfam PF13440 Polysaccharide biosynthesis protein 42 346 1.2E-14 T 06-07-2017 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 1.7E-30 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 SUPERFAMILY SSF54368 3 101 1.07E-36 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 Gene3D G3DSA:3.10.20.70 3 106 6.5E-41 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 06-07-2017 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 Pfam PF00120 Glutamine synthetase, catalytic domain 104 466 4.2E-141 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 SUPERFAMILY SSF55931 104 468 7.16E-137 T 06-07-2017 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 SMART SM01230 103 379 2.3E-146 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 Gene3D G3DSA:3.30.590.10 107 455 2.2E-137 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 06-07-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 06-07-2017 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS01165 e35dce8417906bfcf1e55bcb1f77db38 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 4.8E-205 T 06-07-2017 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS25690 58ff31049f00d65b647bf80851824391 287 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 51 1.2E-5 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS25690 58ff31049f00d65b647bf80851824391 287 Gene3D G3DSA:1.10.3720.10 77 283 9.3E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25690 58ff31049f00d65b647bf80851824391 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 283 7.2E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25690 58ff31049f00d65b647bf80851824391 287 SUPERFAMILY SSF161098 81 269 1.31E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Gene3D G3DSA:1.10.3060.10 644 825 9.9E-55 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SMART SM00958 230 347 6.8E-75 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF81886 878 890 1.57E-78 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF81886 616 835 1.57E-78 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Gene3D G3DSA:3.40.50.300 358 404 1.1E-121 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Gene3D G3DSA:3.40.50.300 7 230 1.1E-121 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SMART SM00957 8 391 1.3E-292 T 06-07-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Gene3D G3DSA:3.90.1440.10 233 357 4.5E-46 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Pfam PF07517 SecA DEAD-like domain 9 390 6.7E-129 T 06-07-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Gene3D G3DSA:3.40.50.300 406 614 1.8E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF52540 406 614 8.54E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 172 192 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 65 89 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 328 350 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 119 129 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 103 117 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 365 382 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 PRINTS PR00906 SecA protein signature 402 415 4.5E-69 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 30 810 0.0 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Pfam PF01043 SecA preprotein cross-linking domain 235 347 8.7E-38 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Hamap MF_01382 Protein translocase subunit SecA [secA]. 7 827 19.957 T 06-07-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF81767 229 357 2.22E-43 T 06-07-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 ProSitePatterns PS01312 SecA family signature. 490 505 - T 06-07-2017 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF52540 8 230 5.33E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 SUPERFAMILY SSF52540 357 404 5.33E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Pfam PF02810 SEC-C motif 882 899 1.6E-10 T 06-07-2017 IPR004027 SEC-C motif CDO28_RS14000 230c4bc3ab6f2ca6112c03df479a3bf2 903 Pfam PF07516 SecA Wing and Scaffold domain 613 824 4.5E-65 T 06-07-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 Gene3D G3DSA:3.90.15.10 121 250 2.6E-31 T 06-07-2017 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 SUPERFAMILY SSF56349 111 346 8.54E-57 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 Gene3D G3DSA:1.20.120.380 266 334 5.8E-14 T 06-07-2017 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 SUPERFAMILY SSF55869 55 115 7.59E-21 T 06-07-2017 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 155 174 2.0E-7 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 264 278 2.0E-7 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 199 215 2.0E-7 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 178 192 2.0E-7 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 311 322 2.0E-7 T 06-07-2017 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 CDO28_RS29085 c9acc82e9e0bee888098b3d043a9840c 380 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 114 281 2.1E-21 T 06-07-2017 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003918|GO:0006265 CDO28_RS10820 682cce3c23f1d43804dfec7e542370e7 389 SUPERFAMILY SSF51569 55 338 1.1E-8 T 06-07-2017 CDO28_RS10820 682cce3c23f1d43804dfec7e542370e7 389 Gene3D G3DSA:3.20.20.70 211 338 6.1E-4 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10820 682cce3c23f1d43804dfec7e542370e7 389 Pfam PF06187 Protein of unknown function (DUF993) 6 386 2.8E-187 T 06-07-2017 IPR009334 Protein of unknown function DUF993 CDO28_RS05255 2df9a8534b3ce84df80e3c851b171493 102 SUPERFAMILY SSF47413 12 85 2.47E-22 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS05255 2df9a8534b3ce84df80e3c851b171493 102 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 5 84 1.6E-30 T 06-07-2017 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 CDO28_RS05255 2df9a8534b3ce84df80e3c851b171493 102 Pfam PF01381 Helix-turn-helix 20 69 4.2E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS05255 2df9a8534b3ce84df80e3c851b171493 102 Gene3D G3DSA:1.10.260.40 3 88 3.7E-29 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS05255 2df9a8534b3ce84df80e3c851b171493 102 SMART SM00530 10 70 6.4E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 Pfam PF00121 Triosephosphate isomerase 8 247 1.1E-79 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 8 242 4.8E-50 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 SUPERFAMILY SSF51351 5 251 1.26E-84 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 Gene3D G3DSA:3.20.20.70 6 253 7.4E-91 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 5 251 37.165 T 06-07-2017 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS03195 5fab35029bd33c62405cc62eb55b1861 256 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 06-07-2017 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 SUPERFAMILY SSF51366 4 254 3.3E-88 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 Pfam PF00290 Tryptophan synthase alpha chain 9 253 6.5E-89 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 Gene3D G3DSA:3.20.20.70 4 272 8.4E-97 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 14 254 2.3E-75 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 269 35.862 T 06-07-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10495 15865cc13440fdb8bc504c975ce26087 279 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 49 62 - T 06-07-2017 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 Gene3D G3DSA:1.10.1900.20 55 117 2.7E-29 T 06-07-2017 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 71 4.0E-21 T 06-07-2017 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 Pfam PF00453 Ribosomal protein L20 3 109 1.6E-45 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 5.1E-46 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 SUPERFAMILY SSF74731 3 117 6.02E-46 T 06-07-2017 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.8E-32 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.8E-32 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.8E-32 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09135 61a9f8a0d1f99d0a3d65b3f99b755ad3 134 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.528 T 06-07-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 Gene3D G3DSA:3.40.190.10 90 176 3.4E-17 T 06-07-2017 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 Pfam PF03466 LysR substrate binding domain 90 289 5.2E-38 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 SUPERFAMILY SSF46785 1 111 7.48E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 SUPERFAMILY SSF53850 90 287 4.81E-37 T 06-07-2017 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 Gene3D G3DSA:3.40.190.10 177 261 1.1E-18 T 06-07-2017 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-17 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19775 ca5ffd4ba1944efb26bfb2b9145bfea4 301 Gene3D G3DSA:1.10.10.10 1 86 5.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27960 603f88b0e97064a41abf1bc9265b52b4 291 SUPERFAMILY SSF161098 53 280 7.19E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27960 603f88b0e97064a41abf1bc9265b52b4 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 286 7.0E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27960 603f88b0e97064a41abf1bc9265b52b4 291 Gene3D G3DSA:1.10.3720.10 3 282 1.2E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 SUPERFAMILY SSF52540 1 191 2.67E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 TIGRFAM TIGR01351 adk: adenylate kinase 2 191 2.0E-62 T 06-07-2017 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 PRINTS PR00094 Adenylate kinase signature 156 170 1.2E-31 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 PRINTS PR00094 Adenylate kinase signature 81 97 1.2E-31 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 PRINTS PR00094 Adenylate kinase signature 32 46 1.2E-31 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 PRINTS PR00094 Adenylate kinase signature 4 17 1.2E-31 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 PRINTS PR00094 Adenylate kinase signature 139 154 1.2E-31 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 Hamap MF_00235 Adenylate kinase [adk]. 1 192 44.636 T 06-07-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 06-07-2017 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 Pfam PF00406 Adenylate kinase 6 168 6.1E-56 T 06-07-2017 CDO28_RS03525 ad1616e1c69884791f8db3e28cd4c0aa 192 Gene3D G3DSA:3.40.50.300 1 191 1.2E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27915 f37a4e370bd5852236f85dc1be14ebcc 300 Gene3D G3DSA:1.10.3720.10 17 290 1.9E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27915 f37a4e370bd5852236f85dc1be14ebcc 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 290 1.1E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27915 f37a4e370bd5852236f85dc1be14ebcc 300 SUPERFAMILY SSF161098 60 287 1.44E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 Gene3D G3DSA:1.10.10.10 7 89 8.8E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 Gene3D G3DSA:3.40.190.10 98 194 3.0E-21 T 06-07-2017 CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 7.8E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 SUPERFAMILY SSF53850 93 296 8.14E-44 T 06-07-2017 CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 SUPERFAMILY SSF46785 5 116 6.16E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21655 05e546b83abc49dd605002d007a67238 301 Pfam PF03466 LysR substrate binding domain 92 295 4.6E-44 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 Gene3D G3DSA:3.50.50.60 1 109 2.3E-16 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 4.9E-17 T 06-07-2017 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 4.9E-17 T 06-07-2017 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 4.9E-17 T 06-07-2017 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 4.9E-17 T 06-07-2017 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 Gene3D G3DSA:3.50.50.60 110 323 2.8E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 315 5.5E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 SUPERFAMILY SSF51905 1 120 3.96E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 SUPERFAMILY SSF51905 152 172 3.96E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 SUPERFAMILY SSF51905 210 331 3.96E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 2 24 3.4E-8 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 3.4E-8 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS28545 5004facd76ee0d7f47509949ecbc81a4 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 3.4E-8 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 SUPERFAMILY SSF50331 236 355 5.59E-25 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Gene3D G3DSA:2.40.50.100 342 354 1.0E-7 T 06-07-2017 CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Gene3D G3DSA:2.40.50.100 239 282 1.0E-7 T 06-07-2017 CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 SUPERFAMILY SSF52540 4 242 6.46E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Pfam PF08402 TOBE domain 278 348 2.3E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Gene3D G3DSA:2.40.50.140 283 340 4.0E-7 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 SMART SM00382 28 211 1.6E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Gene3D G3DSA:3.40.50.300 3 234 1.0E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14605 0f13a7f9f81cd2c0d127117e07e9dcd6 355 Pfam PF00005 ABC transporter 19 161 2.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00149 Fumarate lyase superfamily signature 151 169 2.5E-25 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00149 Fumarate lyase superfamily signature 106 124 2.5E-25 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00149 Fumarate lyase superfamily signature 235 262 2.5E-25 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 2.5E-25 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Gene3D G3DSA:1.10.40.30 379 434 9.7E-23 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Pfam PF00206 Lyase 13 304 1.1E-57 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Gene3D G3DSA:1.20.200.10 231 378 7.1E-77 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Gene3D G3DSA:1.20.200.10 124 186 7.1E-77 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 SUPERFAMILY SSF48557 10 461 1.73E-121 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 TIGRFAM TIGR00838 argH: argininosuccinate lyase 7 458 2.0E-152 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Pfam PF14698 Argininosuccinate lyase C-terminal 367 434 4.9E-18 T 06-07-2017 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 197 213 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 235 259 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 105 127 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 314 333 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 PRINTS PR00145 Argininosuccinate lyase family signature 146 166 1.4E-50 T 06-07-2017 CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Gene3D G3DSA:1.10.275.10 196 230 2.8E-39 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Gene3D G3DSA:1.10.275.10 32 123 2.8E-39 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS26120 466b2c9b0d53f35dc02a6fdad4d60b38 488 Hamap MF_00006 Argininosuccinate lyase [argH]. 6 457 38.73 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 Gene3D G3DSA:3.20.20.10 44 282 1.2E-64 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01182 Ornithine decarboxylase signature 61 88 2.7E-6 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01182 Ornithine decarboxylase signature 105 129 2.7E-6 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01182 Ornithine decarboxylase signature 353 363 2.7E-6 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 SUPERFAMILY SSF51419 33 293 8.83E-63 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 Gene3D G3DSA:2.40.37.10 283 407 7.1E-32 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 TIGRFAM TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated 14 407 1.1E-174 T 06-07-2017 IPR017530 Pyridoxal-dependent decarboxylase, exosortase system type 1 associated CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 46 291 6.2E-34 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 296 406 7.7E-15 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 SUPERFAMILY SSF50621 271 407 4.81E-35 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 1.4E-10 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 1.4E-10 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 281 300 1.4E-10 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 1.4E-10 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS33435 cd9ec1760d198be36a28fa3b65a23bdd 408 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 229 245 - T 06-07-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 Gene3D G3DSA:3.50.50.60 263 346 3.1E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 Gene3D G3DSA:3.50.50.60 3 177 3.1E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 Pfam PF01494 FAD binding domain 4 309 2.2E-30 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 SUPERFAMILY SSF51905 3 172 4.22E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 SUPERFAMILY SSF51905 262 377 4.22E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 379 8.4E-92 T 06-07-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 275 290 1.0E-22 T 06-07-2017 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.0E-22 T 06-07-2017 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.0E-22 T 06-07-2017 CDO28_RS00985 6c9b1ae4e667ba658ee79ddda00d891e 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 306 1.0E-22 T 06-07-2017 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 SUPERFAMILY SSF52029 184 376 1.47E-86 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 42.41 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 2.3E-256 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 SUPERFAMILY SSF54849 138 203 2.98E-22 T 06-07-2017 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 Gene3D G3DSA:1.10.560.10 3 188 1.6E-46 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 Gene3D G3DSA:1.10.560.10 367 518 1.2E-43 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 Gene3D G3DSA:3.50.7.10 189 366 6.6E-103 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.2E-97 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 SUPERFAMILY SSF48592 406 521 3.75E-76 T 06-07-2017 CDO28_RS22370 a04be0930fcfe64dd9ef2ec2c7ab0ab5 545 SUPERFAMILY SSF48592 7 134 3.75E-76 T 06-07-2017 CDO28_RS13730 6d95e628a56ea0ff1b0e303731034517 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 8 62 1.9E-6 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS13730 6d95e628a56ea0ff1b0e303731034517 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 7 67 1.3E-14 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS13730 6d95e628a56ea0ff1b0e303731034517 91 Gene3D G3DSA:1.10.1220.10 4 45 1.5E-5 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS13730 6d95e628a56ea0ff1b0e303731034517 91 SUPERFAMILY SSF47598 2 46 1.22E-11 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS28655 c71eec764d6dc40075185acb30b8f6ba 151 Pfam PF04214 Protein of unknown function, DUF 56 122 1.1E-31 T 06-07-2017 IPR007332 Protein of unknown function DUF411 CDO28_RS28655 c71eec764d6dc40075185acb30b8f6ba 151 SUPERFAMILY SSF52833 27 103 4.81E-8 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 Gene3D G3DSA:3.40.50.1270 180 385 1.1E-77 T 06-07-2017 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 Gene3D G3DSA:3.40.50.1260 4 179 1.9E-70 T 06-07-2017 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 16 26 - T 06-07-2017 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 397 39.876 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 32 54 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 350 361 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 138 160 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 168 190 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 373 390 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 11 27 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 1.5E-79 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 PIRSF PIRSF000724 1 399 3.5E-148 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 Pfam PF00162 Phosphoglycerate kinase 7 387 1.1E-148 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13285 1a127d489f9a6e89fd9a62eeb3879e01 399 SUPERFAMILY SSF53748 1 397 1.77E-150 T 06-07-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 SUPERFAMILY SSF55347 144 343 5.72E-32 T 06-07-2017 CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 Gene3D G3DSA:3.40.50.720 47 156 2.2E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 174 262 4.0E-5 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 48 134 1.6E-7 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 Gene3D G3DSA:3.30.360.10 157 373 1.4E-39 T 06-07-2017 CDO28_RS10005 b56225bf62ac069aaa78dca8b6d3071d 382 SUPERFAMILY SSF51735 48 171 8.32E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 SMART SM00044 437 629 6.9E-19 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 Pfam PF05226 CHASE2 domain 17 362 1.3E-49 T 06-07-2017 IPR007890 CHASE2 CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 SMART SM01080 30 364 3.6E-74 T 06-07-2017 IPR007890 CHASE2 CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 SUPERFAMILY SSF55073 458 648 5.81E-54 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 463 639 1.6E-30 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS17560 feb83643319868849f3cdece090a8dcd 725 Gene3D G3DSA:3.30.70.1230 463 648 3.6E-42 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.2E-23 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 1.2E-23 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 1.2E-23 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PRINTS PR01703 Manganese superoxide dismutase signature 122 130 1.2E-23 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.2E-23 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 06-07-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 PIRSF PIRSF000349 1 200 6.1E-74 T 06-07-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 Gene3D G3DSA:1.10.287.990 20 85 2.1E-21 T 06-07-2017 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 SUPERFAMILY SSF54719 88 198 1.03E-40 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 191 1.1E-33 T 06-07-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 85 1.7E-27 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS05665 96f44109293198e42c48d0f29e48a37d 200 SUPERFAMILY SSF46609 1 85 5.63E-31 T 06-07-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDO28_RS07555 19872baee5acb9b691de8a538290ac52 62 SUPERFAMILY SSF54786 7 62 1.06E-5 T 06-07-2017 CDO28_RS07555 19872baee5acb9b691de8a538290ac52 62 Gene3D G3DSA:3.30.920.30 9 62 2.4E-8 T 06-07-2017 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 Pfam PF01061 ABC-2 type transporter 16 227 2.7E-27 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 TIGRFAM TIGR01291 nodJ: ABC-2 type transporter, NodJ family 10 261 4.5E-141 T 06-07-2017 IPR005981 ABC-2 type transporter, NodJ GO:0005215|GO:0009877|GO:0015772|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 147 171 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 65 87 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 110 135 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 184 203 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 204 223 1.5E-68 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS23140 7be207516f87dca1cbd87287122e1c4d 262 PIRSF PIRSF006648 4 261 4.3E-25 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 4 263 29.892 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 Pfam PF02735 Ku70/Ku80 beta-barrel domain 15 182 1.6E-33 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 Gene3D G3DSA:2.40.290.10 6 155 1.8E-11 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 PIRSF PIRSF006493 2 272 2.7E-103 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 SMART SM00559 56 182 1.1E-14 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 SUPERFAMILY SSF100939 4 266 1.35E-46 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS28880 75cf20136f634d6eada22ab7faf3db32 272 TIGRFAM TIGR02772 Ku_bact: Ku protein 5 265 1.0E-89 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS20635 d342254e050cc36ca8f329fe04ad119a 188 Gene3D G3DSA:1.10.357.10 69 187 3.9E-19 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS20635 d342254e050cc36ca8f329fe04ad119a 188 SUPERFAMILY SSF46689 2 79 1.23E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20635 d342254e050cc36ca8f329fe04ad119a 188 Gene3D G3DSA:1.10.10.60 2 63 9.3E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20635 d342254e050cc36ca8f329fe04ad119a 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 54 4.9E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS20635 d342254e050cc36ca8f329fe04ad119a 188 SUPERFAMILY SSF48498 80 186 1.81E-18 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 SUPERFAMILY SSF50331 236 369 7.29E-25 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 SMART SM00382 28 210 2.0E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Gene3D G3DSA:3.40.50.300 4 236 6.6E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Gene3D G3DSA:2.40.50.100 239 289 1.5E-12 T 06-07-2017 CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Gene3D G3DSA:2.40.50.100 355 369 1.5E-12 T 06-07-2017 CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Pfam PF08402 TOBE domain 286 361 1.0E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Pfam PF00005 ABC transporter 19 161 2.3E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 SUPERFAMILY SSF52540 4 242 5.46E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 Gene3D G3DSA:2.40.50.140 290 353 5.6E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS10865 5a426ecc64afcbf8139864473268ac91 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31635 8dbf4ae1af519595acd31e347baadd3b 226 Pfam PF01965 DJ-1/PfpI family 27 223 5.3E-20 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS31635 8dbf4ae1af519595acd31e347baadd3b 226 SUPERFAMILY SSF52317 1 225 1.43E-81 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS31635 8dbf4ae1af519595acd31e347baadd3b 226 Gene3D G3DSA:3.40.50.880 1 226 3.8E-97 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 221 461 4.5E-83 T 06-07-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 SUPERFAMILY SSF51735 6 285 1.81E-94 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 Gene3D G3DSA:1.10.1040.10 286 488 3.1E-61 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 30 192 1.4E-39 T 06-07-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 SUPERFAMILY SSF48179 287 489 6.8E-59 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 PRINTS PR00084 Mannitol dehydrogenase signature 31 41 3.4E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 PRINTS PR00084 Mannitol dehydrogenase signature 183 196 3.4E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 PRINTS PR00084 Mannitol dehydrogenase signature 222 235 3.4E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 PRINTS PR00084 Mannitol dehydrogenase signature 252 267 3.4E-21 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 222 234 - T 06-07-2017 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS15010 1224c0710608a053e9c368b8d4ce9905 494 Gene3D G3DSA:3.40.50.720 9 285 1.2E-102 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 06-07-2017 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 Gene3D G3DSA:3.30.470.20 94 223 6.8E-52 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 Gene3D G3DSA:3.30.200.20 7 93 9.8E-38 T 06-07-2017 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 Pfam PF01259 SAICAR synthetase 6 235 2.9E-62 T 06-07-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 238 33.031 T 06-07-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 239 1.4E-68 T 06-07-2017 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 CDO28_RS00410 fdcc5d29235d2b3fc5f62927b9c6ee02 254 SUPERFAMILY SSF56104 5 236 2.26E-79 T 06-07-2017 CDO28_RS13775 6a41dde6b25b9938d53f461139542e6a 330 PIRSF PIRSF031900 1 330 4.2E-161 T 06-07-2017 IPR014567 Uncharacterised conserved protein UCP031900 CDO28_RS13775 6a41dde6b25b9938d53f461139542e6a 330 Pfam PF13449 Esterase-like activity of phytase 64 315 1.5E-36 T 06-07-2017 IPR027372 Phytase-like domain CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 SUPERFAMILY SSF54909 70 150 5.36E-16 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 Gene3D G3DSA:3.30.70.920 64 143 1.8E-23 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 55 2.0E-17 T 06-07-2017 CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 Gene3D G3DSA:1.10.10.10 9 57 2.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 1.1E-12 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 1.1E-12 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 1.1E-12 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 SUPERFAMILY SSF46785 8 67 8.29E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 SMART SM00344 8 117 5.5E-36 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS00795 48af596bc1f2e18afb7e15de3f29270f 160 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 4.6E-16 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS06560 3bce52ccb58513639d60bac539b3dc53 610 Gene3D G3DSA:3.40.50.720 405 534 1.6E-27 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06560 3bce52ccb58513639d60bac539b3dc53 610 SUPERFAMILY SSF51735 406 533 9.38E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06560 3bce52ccb58513639d60bac539b3dc53 610 Pfam PF00999 Sodium/hydrogen exchanger family 14 374 2.0E-68 T 06-07-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDO28_RS06560 3bce52ccb58513639d60bac539b3dc53 610 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 16 286 9.5E-78 T 06-07-2017 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CDO28_RS06560 3bce52ccb58513639d60bac539b3dc53 610 Pfam PF02254 TrkA-N domain 407 517 1.2E-17 T 06-07-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDO28_RS12310 73ef26f859e48298213aee640d568d78 81 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 71 2.0E-11 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS12310 73ef26f859e48298213aee640d568d78 81 Gene3D G3DSA:3.40.1620.10 4 43 1.4E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS12310 73ef26f859e48298213aee640d568d78 81 SUPERFAMILY SSF143120 4 45 3.79E-7 T 06-07-2017 CDO28_RS12310 73ef26f859e48298213aee640d568d78 81 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 55 6.2E-17 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 4 256 41.646 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 10 256 1.1E-96 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 SUPERFAMILY SSF56281 9 256 8.4E-68 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 PIRSF PIRSF005457 1 256 5.2E-103 T 06-07-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 Gene3D G3DSA:3.60.15.10 9 256 7.6E-83 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 SMART SM00849 14 172 3.0E-33 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 Pfam PF00753 Metallo-beta-lactamase superfamily 33 172 1.1E-17 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS13805 7cb30a518f85d91b0b02248258f3db64 256 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 173 256 9.8E-25 T 06-07-2017 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDO28_RS10505 c1da34250d0aadb6d2ff6a609253bfbe 215 SUPERFAMILY SSF51366 4 211 9.1E-57 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS10505 c1da34250d0aadb6d2ff6a609253bfbe 215 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 208 1.0E-41 T 06-07-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDO28_RS10505 c1da34250d0aadb6d2ff6a609253bfbe 215 Gene3D G3DSA:3.20.20.70 3 212 3.7E-63 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10505 c1da34250d0aadb6d2ff6a609253bfbe 215 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 213 38.488 T 06-07-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 Gene3D G3DSA:2.40.50.140 279 341 2.8E-5 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 SUPERFAMILY SSF52540 4 242 2.28E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 SMART SM00382 28 219 5.6E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 SUPERFAMILY SSF50331 236 356 6.07E-18 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 Gene3D G3DSA:3.40.50.300 4 234 8.8E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 Pfam PF08402 TOBE domain 277 349 7.5E-10 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 Pfam PF00005 ABC transporter 20 161 1.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29160 dcf37cecad6dd84131998fc09d2786a8 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS18695 9ca87d180d5e8d3b22ce4defdd22088c 195 SUPERFAMILY SSF50199 38 153 6.54E-28 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS18695 9ca87d180d5e8d3b22ce4defdd22088c 195 Gene3D G3DSA:2.40.50.90 38 125 3.7E-15 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS18695 9ca87d180d5e8d3b22ce4defdd22088c 195 SMART SM00318 26 148 1.1E-7 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS18695 9ca87d180d5e8d3b22ce4defdd22088c 195 Pfam PF00565 Staphylococcal nuclease homologue 50 146 1.5E-9 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 Hamap MF_01895 Ribonuclease R [rnr]. 60 752 51.426 T 06-07-2017 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 ProSitePatterns PS01175 Ribonuclease II family signature. 590 614 - T 06-07-2017 IPR022966 Ribonuclease II/R, conserved site CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 156 739 1.1E-141 T 06-07-2017 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 TIGRFAM TIGR02063 RNase_R: ribonuclease R 41 752 1.3E-213 T 06-07-2017 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 SMART SM00316 669 752 3.4E-8 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 SMART SM00955 292 623 7.5E-155 T 06-07-2017 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 Gene3D G3DSA:2.40.50.140 671 751 1.5E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 SUPERFAMILY SSF50249 669 751 2.03E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 Pfam PF00575 S1 RNA binding domain 670 739 1.4E-10 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 Pfam PF00773 RNB domain 292 621 3.0E-88 T 06-07-2017 CDO28_RS03955 471f3aa1923489e048f4c87db4340699 789 SUPERFAMILY SSF50249 262 668 2.74E-128 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS08640 f46bcf56381a11637f47b21c9c5de082 190 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 1.0E-15 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CDO28_RS08640 f46bcf56381a11637f47b21c9c5de082 190 SUPERFAMILY SSF69754 1 102 1.06E-24 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CDO28_RS08640 f46bcf56381a11637f47b21c9c5de082 190 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 128 181 1.5E-14 T 06-07-2017 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CDO28_RS08640 f46bcf56381a11637f47b21c9c5de082 190 Gene3D G3DSA:3.30.160.100 1 97 1.6E-22 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CDO28_RS08640 f46bcf56381a11637f47b21c9c5de082 190 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 3.9E-15 T 06-07-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CDO28_RS30430 d32aa167eb2ace6d6dd3d250b895989c 287 SUPERFAMILY SSF161098 13 287 3.46E-70 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30430 d32aa167eb2ace6d6dd3d250b895989c 287 Gene3D G3DSA:1.10.3720.10 9 275 8.5E-64 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30430 d32aa167eb2ace6d6dd3d250b895989c 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 277 2.3E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 613 630 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Gene3D G3DSA:3.40.50.20 1 129 2.9E-49 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 SUPERFAMILY SSF52440 1 113 1.22E-47 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Pfam PF02785 Biotin carboxylase C-terminal domain 341 446 3.9E-35 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Pfam PF00364 Biotin-requiring enzyme 591 656 3.6E-15 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Gene3D G3DSA:3.30.470.20 204 451 1.9E-101 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 SUPERFAMILY SSF51230 589 656 4.32E-18 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.0E-44 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Gene3D G3DSA:3.30.1490.20 130 202 3.4E-28 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 SUPERFAMILY SSF56059 83 353 1.24E-66 T 06-07-2017 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 SUPERFAMILY SSF51246 336 452 5.23E-38 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 328 1.0E-74 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 Gene3D G3DSA:2.40.50.100 589 656 1.2E-20 T 06-07-2017 CDO28_RS26270 cb8bdcc8e1f541600af97f3d1efbb09d 662 SMART SM00878 341 446 1.7E-54 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 PIRSF PIRSF002825 10 333 1.1E-92 T 06-07-2017 IPR026045 Ferric binding protein CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 Pfam PF13343 Bacterial extracellular solute-binding protein 74 313 1.0E-31 T 06-07-2017 CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 Gene3D G3DSA:3.40.190.10 129 264 8.3E-41 T 06-07-2017 CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 Gene3D G3DSA:3.40.190.10 9 124 4.6E-44 T 06-07-2017 CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 Gene3D G3DSA:3.40.190.10 265 324 4.6E-44 T 06-07-2017 CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 12 337 1.8E-157 T 06-07-2017 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative CDO28_RS27635 defc2a5e14f0c688afe71e86a519768d 340 SUPERFAMILY SSF53850 26 330 9.39E-75 T 06-07-2017 CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 185 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 214 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 233 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 251 271 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 45 62 5.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 53 288 2.8E-60 T 06-07-2017 CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 182 210 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 Gene3D G3DSA:3.40.50.720 37 288 2.9E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 2.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 2.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 2.5E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23575 3ccc97a24b488ac91a09c89eb0c70851 291 SUPERFAMILY SSF51735 43 288 4.48E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 Pfam PF01979 Amidohydrolase family 67 427 2.6E-55 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 Gene3D G3DSA:2.30.40.10 373 430 2.3E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 Gene3D G3DSA:2.30.40.10 27 71 2.3E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 Gene3D G3DSA:3.20.20.140 72 372 1.2E-103 T 06-07-2017 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 26 426 4.9E-180 T 06-07-2017 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 SUPERFAMILY SSF51338 24 71 1.77E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 SUPERFAMILY SSF51338 372 394 1.77E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26730 5ecbc0e7717e12d52042dff66ebae384 447 SUPERFAMILY SSF51556 70 373 6.81E-95 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 11 187 5.1E-61 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 SUPERFAMILY SSF90002 277 362 3.14E-25 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 SUPERFAMILY SSF52540 8 215 7.09E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 Gene3D G3DSA:3.40.50.300 8 206 4.1E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 Gene3D G3DSA:3.30.1220.10 242 362 6.2E-41 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 278 362 6.3E-23 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS12760 c7e0dbf1c87446d3f6950e920c4eca3a 366 SMART SM00833 270 363 6.4E-16 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS17780 51f937f0c9afd13f18d14fd5a700f20b 597 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 514 6.9E-145 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS26595 afc1e82c062bdc64008280976c456c7f 415 SUPERFAMILY SSF53756 19 409 1.26E-65 T 06-07-2017 CDO28_RS26595 afc1e82c062bdc64008280976c456c7f 415 Gene3D G3DSA:3.40.50.2000 197 388 1.3E-21 T 06-07-2017 CDO28_RS26595 afc1e82c062bdc64008280976c456c7f 415 Pfam PF00534 Glycosyl transferases group 1 220 388 1.5E-32 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 Pfam PF03466 LysR substrate binding domain 91 294 2.9E-38 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 Gene3D G3DSA:1.10.10.10 7 91 9.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.2E-17 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 SUPERFAMILY SSF53850 91 299 5.43E-42 T 06-07-2017 CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 SUPERFAMILY SSF46785 4 114 5.83E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 Gene3D G3DSA:3.40.190.10 180 263 2.1E-17 T 06-07-2017 CDO28_RS24045 5f1b810065b4ed1b575d2bc4c6d8e76e 301 Gene3D G3DSA:3.40.190.10 94 179 4.7E-22 T 06-07-2017 CDO28_RS30425 f91c77218f7a5c4d4ca8acd7a597766b 640 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 18 551 3.5E-193 T 06-07-2017 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 CDO28_RS30425 f91c77218f7a5c4d4ca8acd7a597766b 640 SUPERFAMILY SSF48208 71 414 5.1E-48 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS30425 f91c77218f7a5c4d4ca8acd7a597766b 640 Gene3D G3DSA:1.50.10.10 104 302 4.0E-19 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 SUPERFAMILY SSF53850 81 292 1.63E-41 T 06-07-2017 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 Pfam PF03466 LysR substrate binding domain 83 284 4.1E-43 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 1.6E-17 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 SUPERFAMILY SSF46785 1 105 1.31E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 Gene3D G3DSA:1.10.10.10 1 78 9.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 Gene3D G3DSA:3.40.190.10 83 169 4.7E-21 T 06-07-2017 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06775 cb0edcd0ce0d3b5d9c812e515f6df231 311 Gene3D G3DSA:3.40.190.10 170 262 1.7E-24 T 06-07-2017 CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 64 420 1.6E-79 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 Gene3D G3DSA:3.40.190.10 188 295 8.3E-35 T 06-07-2017 CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 Gene3D G3DSA:3.10.105.10 296 490 8.0E-39 T 06-07-2017 CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 Gene3D G3DSA:3.90.76.10 32 187 3.6E-39 T 06-07-2017 CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 SUPERFAMILY SSF53850 21 516 3.44E-122 T 06-07-2017 CDO28_RS14205 1de4b1ea07daaef2acb63af02ab6cc64 520 PIRSF PIRSF002741 18 518 9.7E-86 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 329 45.808 T 06-07-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 327 5.1E-128 T 06-07-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 1.3E-66 T 06-07-2017 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 9.6E-73 T 06-07-2017 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 SUPERFAMILY SSF48179 184 333 6.12E-72 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 Gene3D G3DSA:1.10.1040.10 29 326 8.7E-114 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS16955 afc36bc57c74e395a1dbb8bcc08de16e 339 SUPERFAMILY SSF51735 1 183 2.13E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 118 213 7.9E-27 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 SUPERFAMILY SSF47203 223 376 8.86E-58 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 111 3.9E-24 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Gene3D G3DSA:1.20.140.10 214 377 1.6E-67 T 06-07-2017 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 120 132 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Gene3D G3DSA:1.10.540.10 2 113 6.4E-30 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 373 4.0E-49 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 Gene3D G3DSA:2.40.110.10 118 213 1.6E-38 T 06-07-2017 CDO28_RS24410 f990ba2ca40a397ae9252ef9441061d7 380 SUPERFAMILY SSF56645 2 238 5.63E-73 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 SUPERFAMILY SSF46626 100 197 3.2E-29 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 SUPERFAMILY SSF46626 30 64 3.2E-29 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 5 287 3.2E-110 T 06-07-2017 IPR004678 Cytochrome c oxidase cbb3-type, subunit III CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 PIRSF PIRSF000006 1 287 2.0E-114 T 06-07-2017 IPR004678 Cytochrome c oxidase cbb3-type, subunit III CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Gene3D G3DSA:1.10.760.10 204 286 1.9E-23 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 205 280 1.5E-9 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 109 192 1.3E-14 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 SUPERFAMILY SSF46626 199 286 1.08E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 11 57 1.0E-26 T 06-07-2017 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 PRINTS PR00605 Class IC cytochrome C signature 214 225 1.2E-5 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 PRINTS PR00605 Class IC cytochrome C signature 258 280 1.2E-5 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Gene3D G3DSA:1.10.760.10 36 57 2.5E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22595 6b8cf951a5377a7ddd4df065f75cffe6 287 Gene3D G3DSA:1.10.760.10 104 197 2.5E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS03860 21c1ea1e626d8bc13b87cc2e86c6b1be 204 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 13 184 1.7E-68 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 CDO28_RS03860 21c1ea1e626d8bc13b87cc2e86c6b1be 204 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 17 198 3.2E-58 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 CDO28_RS03860 21c1ea1e626d8bc13b87cc2e86c6b1be 204 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 204 82.812 T 06-07-2017 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 CDO28_RS03860 21c1ea1e626d8bc13b87cc2e86c6b1be 204 SUPERFAMILY SSF55729 8 200 1.55E-75 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS07980 6f90e08906d4209035e8ad6eeaa072ca 130 Hamap MF_00791 Protein ApaG [apaG]. 2 130 33.938 T 06-07-2017 IPR023065 Uncharacterised protein family ApaG CDO28_RS07980 6f90e08906d4209035e8ad6eeaa072ca 130 SUPERFAMILY SSF110069 5 127 4.97E-50 T 06-07-2017 IPR007474 ApaG domain CDO28_RS07980 6f90e08906d4209035e8ad6eeaa072ca 130 Pfam PF04379 Protein of unknown function (DUF525) 19 104 2.3E-33 T 06-07-2017 IPR007474 ApaG domain CDO28_RS07980 6f90e08906d4209035e8ad6eeaa072ca 130 Gene3D G3DSA:2.60.40.1470 3 125 6.2E-47 T 06-07-2017 IPR007474 ApaG domain CDO28_RS12045 81c68c218e705436bdb27cf5d48a04f9 159 Pfam PF01584 CheW-like domain 17 151 3.5E-32 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS12045 81c68c218e705436bdb27cf5d48a04f9 159 SUPERFAMILY SSF50341 11 153 5.23E-36 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS12045 81c68c218e705436bdb27cf5d48a04f9 159 Gene3D G3DSA:2.30.30.40 91 134 4.7E-8 T 06-07-2017 CDO28_RS12045 81c68c218e705436bdb27cf5d48a04f9 159 Gene3D G3DSA:2.40.50.180 55 90 2.9E-11 T 06-07-2017 CDO28_RS12045 81c68c218e705436bdb27cf5d48a04f9 159 SMART SM00260 12 149 2.5E-27 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 Pfam PF03167 Uracil DNA glycosylase superfamily 59 212 2.0E-25 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 61 70 - T 06-07-2017 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 9 216 5.6E-81 T 06-07-2017 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 SUPERFAMILY SSF52141 5 225 4.58E-92 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 8 224 40.393 T 06-07-2017 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 SMART SM00986 53 213 1.9E-41 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 Gene3D G3DSA:3.40.470.10 6 225 3.4E-100 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS12475 414d12b35b0ee0f701046d9c83456979 241 SMART SM00987 53 213 1.9E-41 T 06-07-2017 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.758 T 06-07-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PIRSF PIRSF002133 1 123 2.6E-54 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.6E-68 T 06-07-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 Gene3D G3DSA:2.40.50.140 1 123 1.2E-65 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 SUPERFAMILY SSF50249 2 123 2.23E-52 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 Pfam PF00164 Ribosomal protein S12/S23 5 123 4.0E-42 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03655 b20a4ed625891d5ecbff4a940e785dbc 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.2E-60 T 06-07-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 SMART SM00382 332 525 3.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 SMART SM00382 54 254 1.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 SUPERFAMILY SSF52540 315 546 4.51E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 ProSitePatterns PS00211 ABC transporters family signature. 448 462 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Pfam PF00005 ABC transporter 45 204 1.0E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Pfam PF00005 ABC transporter 324 476 1.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 527 554 0.0064 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 257 283 0.029 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Gene3D G3DSA:3.40.50.300 24 278 3.3E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 Gene3D G3DSA:3.40.50.300 298 549 1.0E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30520 3ede386145375df23edcac68e0c21fa9 556 SUPERFAMILY SSF52540 25 276 3.0E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14870 d74c663a8cb6d6e85888ed55927e99bb 179 Gene3D G3DSA:3.40.30.10 2 173 3.1E-58 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS14870 d74c663a8cb6d6e85888ed55927e99bb 179 Pfam PF08534 Redoxin 29 151 7.3E-30 T 06-07-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CDO28_RS14870 d74c663a8cb6d6e85888ed55927e99bb 179 SUPERFAMILY SSF52833 2 174 9.1E-42 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32995 f8a96f470a1ef6090984874b7c2894b9 280 Pfam PF01791 DeoC/LacD family aldolase 19 250 1.1E-55 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS32995 f8a96f470a1ef6090984874b7c2894b9 280 Gene3D G3DSA:3.20.20.70 4 275 3.5E-70 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS32995 f8a96f470a1ef6090984874b7c2894b9 280 SMART SM01133 18 250 1.2E-8 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS32995 f8a96f470a1ef6090984874b7c2894b9 280 SUPERFAMILY SSF51569 6 266 2.05E-58 T 06-07-2017 CDO28_RS32995 f8a96f470a1ef6090984874b7c2894b9 280 PIRSF PIRSF038992 1 280 2.0E-71 T 06-07-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 142 3.9E-24 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 SMART SM00829 8 340 1.1E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 Gene3D G3DSA:3.40.50.720 179 289 2.2E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 SUPERFAMILY SSF51735 147 310 2.75E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 Pfam PF00107 Zinc-binding dehydrogenase 184 304 1.4E-21 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 Gene3D G3DSA:3.90.180.10 5 178 2.9E-64 T 06-07-2017 IPR011032 GroES-like CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 SUPERFAMILY SSF50129 9 170 1.98E-50 T 06-07-2017 IPR011032 GroES-like CDO28_RS13670 c2b6d86814dd7f9f3a8ee3e37e894d7e 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Gene3D G3DSA:3.30.450.20 256 349 4.1E-6 T 06-07-2017 CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 517 1.9E-44 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 357 6.8E-11 T 06-07-2017 IPR000014 PAS domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 SUPERFAMILY SSF55785 262 358 4.95E-10 T 06-07-2017 IPR000014 PAS domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Gene3D G3DSA:3.30.70.270 363 530 3.0E-51 T 06-07-2017 CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 358 518 5.7E-41 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Pfam PF03707 Bacterial signalling protein N terminal repeat 62 112 2.3E-10 T 06-07-2017 IPR005330 MHYT domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Pfam PF03707 Bacterial signalling protein N terminal repeat 124 176 5.1E-8 T 06-07-2017 IPR005330 MHYT domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Pfam PF13426 PAS domain 256 349 4.3E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 SUPERFAMILY SSF141868 538 773 3.53E-85 T 06-07-2017 IPR001633 EAL domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 SUPERFAMILY SSF55073 367 524 1.1E-44 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 SMART SM00052 533 775 4.3E-99 T 06-07-2017 IPR001633 EAL domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Pfam PF00563 EAL domain 539 770 1.9E-66 T 06-07-2017 IPR001633 EAL domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 SMART SM00267 351 523 2.8E-59 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS28755 f68d7dee06e7896ed2196dd299ea15fe 791 Gene3D G3DSA:3.20.20.450 536 774 7.9E-89 T 06-07-2017 IPR001633 EAL domain CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 11 203 24.331 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 PIRSF PIRSF003078 1 204 1.3E-39 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 SUPERFAMILY SSF53335 8 199 6.59E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 Gene3D G3DSA:3.40.50.150 11 196 8.1E-46 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 23 197 2.8E-33 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDO28_RS10660 f056ed94d8319708909bdae467e9b5be 213 Pfam PF02527 rRNA small subunit methyltransferase G 19 196 3.8E-34 T 06-07-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDO28_RS32470 2ac4ab6e7d1a3d42886f1c9863d5cda8 127 Pfam PF01042 Endoribonuclease L-PSP 16 123 8.5E-21 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS32470 2ac4ab6e7d1a3d42886f1c9863d5cda8 127 Gene3D G3DSA:3.30.1330.40 8 125 2.2E-30 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS32470 2ac4ab6e7d1a3d42886f1c9863d5cda8 127 SUPERFAMILY SSF55298 13 125 1.16E-28 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 PRINTS PR00070 Dihydrofolate reductase signature 32 40 8.2E-15 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 PRINTS PR00070 Dihydrofolate reductase signature 102 116 8.2E-15 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 PRINTS PR00070 Dihydrofolate reductase signature 18 28 8.2E-15 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 PRINTS PR00070 Dihydrofolate reductase signature 45 56 8.2E-15 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 SUPERFAMILY SSF53597 5 171 1.24E-55 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 PIRSF PIRSF000194 1 173 3.8E-61 T 06-07-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 Pfam PF00186 Dihydrofolate reductase 6 170 9.6E-57 T 06-07-2017 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDO28_RS16665 a98d197fb13d0eed684fcdba46b20e54 180 Gene3D G3DSA:3.40.430.10 3 171 5.3E-60 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS00665 825fa0c9c6d5ad12521606ae70a18137 405 Gene3D G3DSA:3.40.640.10 44 257 3.2E-63 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS00665 825fa0c9c6d5ad12521606ae70a18137 405 Pfam PF00155 Aminotransferase class I and II 31 381 4.4E-54 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS00665 825fa0c9c6d5ad12521606ae70a18137 405 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS00665 825fa0c9c6d5ad12521606ae70a18137 405 Gene3D G3DSA:3.90.1150.10 258 390 7.1E-43 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS00665 825fa0c9c6d5ad12521606ae70a18137 405 SUPERFAMILY SSF53383 3 389 3.2E-108 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS30795 29798ceb79536b8c58b6c7dac168d09e 286 SUPERFAMILY SSF103481 49 132 6.8E-8 T 06-07-2017 CDO28_RS30795 29798ceb79536b8c58b6c7dac168d09e 286 SUPERFAMILY SSF103481 183 281 7.85E-9 T 06-07-2017 CDO28_RS30795 29798ceb79536b8c58b6c7dac168d09e 286 Pfam PF00892 EamA-like transporter family 6 134 8.4E-14 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS30795 29798ceb79536b8c58b6c7dac168d09e 286 Pfam PF00892 EamA-like transporter family 148 280 2.0E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 Gene3D G3DSA:3.40.190.10 178 257 1.1E-14 T 06-07-2017 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 SUPERFAMILY SSF53850 93 294 1.81E-36 T 06-07-2017 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 Gene3D G3DSA:3.40.190.10 95 177 1.6E-18 T 06-07-2017 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 Gene3D G3DSA:1.10.10.10 8 88 3.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 SUPERFAMILY SSF46785 7 114 9.07E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.5E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.5E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.5E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 5.5E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS28595 77eeac618c5ea1ca9cf0600aafe515e6 298 Pfam PF03466 LysR substrate binding domain 93 292 5.3E-32 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 2.7E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 2.7E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 2.7E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 SMART SM00418 8 82 6.3E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 Pfam PF12840 Helix-turn-helix domain 10 66 5.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 Gene3D G3DSA:1.10.10.10 3 105 7.2E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21250 df26aa73352e87caf4a6f75d361ab5af 108 SUPERFAMILY SSF46785 3 105 2.31E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 8 95 3.5E-14 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 SMART SM00642 156 548 1.7E-5 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 Pfam PF00128 Alpha amylase, catalytic domain 175 265 5.3E-5 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 Gene3D G3DSA:3.20.20.80 147 554 2.2E-91 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 8 633 1.9E-238 T 06-07-2017 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 SUPERFAMILY SSF81296 8 123 4.48E-30 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 SUPERFAMILY SSF51011 562 630 2.88E-9 T 06-07-2017 CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 SUPERFAMILY SSF51445 134 453 1.02E-103 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 SUPERFAMILY SSF51445 482 554 1.02E-103 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 Gene3D G3DSA:2.60.40.10 8 146 4.6E-30 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS12875 0e50998487864c99ece52d0c21720563 662 Gene3D G3DSA:2.60.40.1180 563 630 7.1E-9 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 PIRSF PIRSF000858 1 523 1.0E-178 T 06-07-2017 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 Pfam PF01144 Coenzyme A transferase 4 249 4.3E-27 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 Gene3D G3DSA:3.40.810.20 284 506 5.2E-47 T 06-07-2017 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 SUPERFAMILY SSF100950 3 266 4.19E-75 T 06-07-2017 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 SMART SM00882 4 249 6.1E-52 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 SUPERFAMILY SSF100950 280 521 1.52E-61 T 06-07-2017 CDO28_RS24430 7135d67496c0f19addba09e9ad5a21d0 523 Gene3D G3DSA:3.40.1080.10 1 249 9.6E-59 T 06-07-2017 CDO28_RS06590 bd99fcbc48493b2eda160a4a84ec068e 149 Gene3D G3DSA:3.40.140.10 3 146 5.4E-52 T 06-07-2017 CDO28_RS06590 bd99fcbc48493b2eda160a4a84ec068e 149 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 149 44.516 T 06-07-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CDO28_RS06590 bd99fcbc48493b2eda160a4a84ec068e 149 Pfam PF14437 MafB19-like deaminase 5 146 2.4E-29 T 06-07-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CDO28_RS06590 bd99fcbc48493b2eda160a4a84ec068e 149 SUPERFAMILY SSF53927 5 148 1.32E-47 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS06590 bd99fcbc48493b2eda160a4a84ec068e 149 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:3.40.50.740 403 580 3.1E-82 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:3.40.50.740 626 673 3.1E-82 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:3.40.50.740 100 182 3.1E-82 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:2.20.25.90 42 98 6.1E-18 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 43 96 2.2E-15 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 65 - T 06-07-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 SMART SM00926 43 97 3.6E-11 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Pfam PF01568 Molydopterin dinucleotide binding domain 720 827 5.8E-25 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Pfam PF00384 Molybdopterin oxidoreductase 100 573 2.4E-93 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 5 833 0.0 T 06-07-2017 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 KEGG: 00910+1.7.99.4 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:2.40.40.20 674 830 1.2E-43 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 SUPERFAMILY SSF53706 44 711 1.7E-201 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 SUPERFAMILY SSF50692 689 830 6.56E-40 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:3.40.228.10 330 402 9.2E-55 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Gene3D G3DSA:3.40.228.10 183 295 9.2E-55 T 06-07-2017 CDO28_RS24070 5c8df0b33864017f652059432f806cfb 834 Hamap MF_01630 Nitrate reductase [napA]. 3 833 30.391 T 06-07-2017 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 KEGG: 00910+1.7.99.4 CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 Gene3D G3DSA:3.40.50.720 7 245 1.1E-81 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 6.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 3.7E-5 T 06-07-2017 CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 2.2E-62 T 06-07-2017 CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.7E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 SUPERFAMILY SSF51735 7 245 6.33E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24040 94fc6883f8c03b2a64e1231c1141b85b 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 Gene3D G3DSA:2.30.38.10 296 371 1.7E-12 T 06-07-2017 CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 SUPERFAMILY SSF56801 17 459 1.96E-73 T 06-07-2017 CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 Gene3D G3DSA:1.10.1200.10 472 514 3.5E-5 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 Gene3D G3DSA:3.30.300.30 374 458 7.2E-4 T 06-07-2017 CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 Gene3D G3DSA:3.40.50.980 124 294 1.1E-25 T 06-07-2017 CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 SUPERFAMILY SSF47336 473 514 6.15E-5 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS04690 05cb84efe4a9928e2e126ae8ecdaef1d 885 Pfam PF00501 AMP-binding enzyme 124 377 1.4E-42 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 Pfam PF01207 Dihydrouridine synthase (Dus) 30 302 2.0E-101 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 109 127 - T 06-07-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 Gene3D G3DSA:3.20.20.70 23 248 3.6E-79 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 PIRSF PIRSF006621 16 339 1.7E-103 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 SUPERFAMILY SSF51395 26 296 1.22E-81 T 06-07-2017 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 Gene3D G3DSA:1.10.1200.80 265 299 9.2E-9 T 06-07-2017 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 CDO28_RS03100 fbd3e387994bc48f929eacc90dfb29cc 342 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 19 311 1.2E-99 T 06-07-2017 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 CDO28_RS17100 02d92123f9b2ced7d462730b45950f15 249 SUPERFAMILY SSF55811 103 244 1.49E-9 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS17100 02d92123f9b2ced7d462730b45950f15 249 Gene3D G3DSA:3.90.79.10 106 247 1.2E-8 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 246 2.5E-52 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 Gene3D G3DSA:3.40.190.10 28 105 4.0E-37 T 06-07-2017 CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 Gene3D G3DSA:3.40.190.10 208 246 4.0E-37 T 06-07-2017 CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 SMART SM00062 27 248 2.3E-55 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 Gene3D G3DSA:3.40.190.10 106 201 3.1E-15 T 06-07-2017 CDO28_RS28255 83df574abd5a28e1a91a5caa4d4752f7 248 SUPERFAMILY SSF53850 1 246 2.51E-58 T 06-07-2017 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 2.1E-14 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 SMART SM00354 2 72 4.2E-16 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 Gene3D G3DSA:3.40.50.2300 60 181 3.7E-15 T 06-07-2017 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 6.3E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 6.3E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 Gene3D G3DSA:1.10.260.40 2 59 2.8E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 Pfam PF13407 Periplasmic binding protein domain 65 321 5.4E-42 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 Gene3D G3DSA:3.40.50.2300 182 332 7.3E-29 T 06-07-2017 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 SUPERFAMILY SSF47413 2 60 1.03E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 06-07-2017 CDO28_RS12625 e6d2f4ec656c818a8fd23544ba3c91ca 345 SUPERFAMILY SSF53822 65 325 2.08E-37 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS22400 569707b561875daf4a1b1df32ff0cfa6 562 Gene3D G3DSA:3.90.76.10 72 243 1.8E-39 T 06-07-2017 CDO28_RS22400 569707b561875daf4a1b1df32ff0cfa6 562 Gene3D G3DSA:3.10.105.10 324 531 3.1E-45 T 06-07-2017 CDO28_RS22400 569707b561875daf4a1b1df32ff0cfa6 562 SUPERFAMILY SSF53850 66 550 4.71E-107 T 06-07-2017 CDO28_RS22400 569707b561875daf4a1b1df32ff0cfa6 562 PIRSF PIRSF002741 40 561 4.0E-83 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS22400 569707b561875daf4a1b1df32ff0cfa6 562 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 108 474 1.2E-73 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 SUPERFAMILY SSF46785 1 108 1.76E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 Pfam PF03466 LysR substrate binding domain 92 265 3.7E-11 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 SUPERFAMILY SSF53850 91 265 3.98E-15 T 06-07-2017 CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 2.0E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 Gene3D G3DSA:1.10.10.10 1 82 2.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10215 d34abf1847bce38663c5309027b8ec29 283 Gene3D G3DSA:3.40.190.10 85 169 1.3E-8 T 06-07-2017 CDO28_RS20195 a354c96c5124c7e34885f035b90e2787 40 Pfam PF13817 IS66 C-terminal element 1 34 3.1E-18 T 06-07-2017 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 SUPERFAMILY SSF46894 177 247 8.16E-18 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 Gene3D G3DSA:1.10.10.10 189 247 6.1E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 Pfam PF00196 Bacterial regulatory proteins, luxR family 186 240 5.8E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 SMART SM00421 184 241 1.1E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 201 1.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 217 1.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 229 1.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 Pfam PF03472 Autoinducer binding domain 29 169 1.1E-8 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 SUPERFAMILY SSF75516 25 175 1.09E-10 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 ProSitePatterns PS00622 LuxR-type HTH domain signature. 201 228 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13550 117bc88598f9beac38b73e3f07122f3c 247 Gene3D G3DSA:3.30.450.80 25 188 3.1E-9 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 3.8E-53 T 06-07-2017 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.526 T 06-07-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 Gene3D G3DSA:3.30.190.20 161 226 9.0E-48 T 06-07-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 Gene3D G3DSA:3.30.190.20 18 68 9.0E-48 T 06-07-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 120 139 - T 06-07-2017 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 Gene3D G3DSA:3.40.50.790 69 159 2.0E-40 T 06-07-2017 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 SUPERFAMILY SSF56808 6 226 3.27E-84 T 06-07-2017 IPR023674 Ribosomal protein L1-like CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 PIRSF PIRSF002155 1 227 5.9E-78 T 06-07-2017 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03685 8774ca3dde033c8043edd042b214603f 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.7E-100 T 06-07-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 Pfam PF00202 Aminotransferase class-III 20 415 1.1E-127 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 7 417 6.7E-180 T 06-07-2017 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 Gene3D G3DSA:3.90.1150.10 316 417 6.4E-39 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 Gene3D G3DSA:3.90.1150.10 17 56 6.4E-39 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 Gene3D G3DSA:3.40.640.10 57 315 4.7E-88 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 SUPERFAMILY SSF53383 21 417 5.13E-133 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS27005 e56c7a1fe59edd92b8f1fb15ac1c3c04 422 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 270 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS30900 21bc250fabb9580dadd84ee52a504446 82 SUPERFAMILY SSF47598 5 46 5.78E-10 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS30900 21bc250fabb9580dadd84ee52a504446 82 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 5 72 1.4E-30 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS30900 21bc250fabb9580dadd84ee52a504446 82 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 3 78 1.4E-36 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Gene3D G3DSA:3.40.50.740 68 130 3.2E-87 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Gene3D G3DSA:3.40.50.740 317 565 3.2E-87 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Gene3D G3DSA:2.40.40.20 574 695 2.4E-41 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Pfam PF00384 Molybdopterin oxidoreductase 69 479 1.4E-76 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 620 647 - T 06-07-2017 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 3 54 7.0E-19 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Pfam PF04324 BFD-like [2Fe-2S] binding domain 829 876 8.2E-12 T 06-07-2017 IPR007419 BFD-like [2Fe-2S]-binding domain CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Gene3D G3DSA:2.20.25.90 3 54 4.3E-22 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 SUPERFAMILY SSF53706 2 567 4.06E-189 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Gene3D G3DSA:3.40.228.10 131 316 3.4E-56 T 06-07-2017 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 7 25 - T 06-07-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 Pfam PF01568 Molydopterin dinucleotide binding domain 581 691 4.9E-30 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 SMART SM00926 2 56 5.2E-22 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS28305 54264184f8a4eedecd9f6caac79d5d22 885 SUPERFAMILY SSF50692 554 695 3.16E-42 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 Gene3D G3DSA:3.40.50.720 6 253 4.0E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 SUPERFAMILY SSF51735 5 253 9.02E-85 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.0E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 6.9E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 6.9E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 6.9E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS20000 59f8923d039d45bfb4c2c02e604e7b80 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 3.8E-67 T 06-07-2017 CDO28_RS24660 dc61dd04a3e1bb5db5e865743e52f4c9 370 SUPERFAMILY SSF53383 7 369 5.36E-103 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS24660 dc61dd04a3e1bb5db5e865743e52f4c9 370 Gene3D G3DSA:3.90.1150.10 264 369 5.4E-30 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS24660 dc61dd04a3e1bb5db5e865743e52f4c9 370 Pfam PF00266 Aminotransferase class-V 11 337 7.9E-35 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS24660 dc61dd04a3e1bb5db5e865743e52f4c9 370 PIRSF PIRSF000524 3 369 3.6E-110 T 06-07-2017 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 CDO28_RS24660 dc61dd04a3e1bb5db5e865743e52f4c9 370 Gene3D G3DSA:3.40.640.10 20 263 4.0E-59 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 SMART SM00065 23 168 6.1E-13 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Gene3D G3DSA:3.30.450.40 2 163 6.7E-8 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Gene3D G3DSA:1.10.10.60 482 520 1.1E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Gene3D G3DSA:1.10.10.60 426 444 1.1E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 SMART SM00382 220 363 3.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 SUPERFAMILY SSF52540 199 440 9.97E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 500 517 4.9E-8 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 517 537 4.9E-8 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Pfam PF01590 GAF domain 24 158 2.2E-4 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 SUPERFAMILY SSF55781 27 163 6.54E-7 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 6 541 3.8E-240 T 06-07-2017 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Pfam PF00158 Sigma-54 interaction domain 200 366 2.8E-69 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Pfam PF02954 Bacterial regulatory protein, Fis family 497 534 2.0E-9 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Gene3D G3DSA:1.10.8.60 374 425 3.6E-20 T 06-07-2017 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 224 237 - T 06-07-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 Gene3D G3DSA:3.40.50.300 197 372 1.3E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 412 421 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS22955 8b1ce05c14d8244e417215d3c26bf0a6 541 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 286 301 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 Gene3D G3DSA:3.10.105.10 271 460 8.1E-37 T 06-07-2017 CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 Gene3D G3DSA:3.90.76.10 32 175 1.6E-38 T 06-07-2017 CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 71 93 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 385 6.4E-74 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 SUPERFAMILY SSF53850 23 473 1.16E-108 T 06-07-2017 CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 Gene3D G3DSA:3.40.190.10 176 270 2.6E-31 T 06-07-2017 CDO28_RS24360 21f4fe52b6a679972934a15eba6df708 491 PIRSF PIRSF002741 20 488 6.7E-84 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS24705 130372302a1075ec50cf632ce2d151ce 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 280 4.0E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 30 133 2.0E-31 T 06-07-2017 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 SUPERFAMILY SSF46548 130 257 4.71E-36 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 SUPERFAMILY SSF54292 28 128 2.63E-30 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 Gene3D G3DSA:1.10.1060.10 130 257 1.4E-49 T 06-07-2017 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 Gene3D G3DSA:3.10.20.30 26 128 3.5E-40 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 Pfam PF13534 4Fe-4S dicluster domain 169 242 2.0E-9 T 06-07-2017 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS11720 ab9109287ac5f29e53127fbd299736e1 259 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 251 1.8E-79 T 06-07-2017 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 Gene3D G3DSA:3.30.70.20 3 94 3.8E-21 T 06-07-2017 CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 Pfam PF11953 Domain of unknown function (DUF3470) 66 105 6.8E-19 T 06-07-2017 IPR022569 Ferredoxin, C-terminal CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 6.7E-19 T 06-07-2017 IPR000813 7Fe ferredoxin GO:0009055 CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 6.7E-19 T 06-07-2017 IPR000813 7Fe ferredoxin GO:0009055 CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 6.7E-19 T 06-07-2017 IPR000813 7Fe ferredoxin GO:0009055 CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 Pfam PF00037 4Fe-4S binding domain 34 56 1.2E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS11045 a89d700465d51eaf8c970bb105c7a489 112 SUPERFAMILY SSF54862 3 104 2.14E-25 T 06-07-2017 CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 SUPERFAMILY SSF46689 2 78 4.67E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 9.2E-19 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 7.2E-10 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 7.2E-10 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32420 e180c519cabf352d031c5891a340fd4e 230 Gene3D G3DSA:1.10.357.10 3 177 3.2E-30 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 Gene3D G3DSA:2.60.40.10 394 519 5.2E-27 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 44 503 1.4E-162 T 06-07-2017 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 394 519 1.1E-22 T 06-07-2017 IPR032879 FixG, C-terminal immunoglobulin-like domain CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 Gene3D G3DSA:3.30.70.20 218 315 7.4E-10 T 06-07-2017 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 SUPERFAMILY SSF54862 113 135 1.57E-27 T 06-07-2017 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 SUPERFAMILY SSF54862 182 342 1.57E-27 T 06-07-2017 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 SUPERFAMILY SSF54862 370 402 1.57E-27 T 06-07-2017 CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 Pfam PF13746 4Fe-4S dicluster domain 227 331 4.1E-42 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 280 291 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS22600 b65ed0fa252f9b6fc72da7a76839d279 524 Pfam PF12801 4Fe-4S binding domain 105 138 4.6E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 SUPERFAMILY SSF51306 99 214 3.79E-13 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 SMART SM00530 8 64 5.3E-4 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 Gene3D G3DSA:1.10.260.40 12 63 1.8E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 SUPERFAMILY SSF47413 3 70 1.38E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 Gene3D G3DSA:2.10.109.10 99 214 1.8E-13 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS01820 492a88febbbbe9cb97e09158f2772a6d 233 Pfam PF00717 Peptidase S24-like 140 212 2.0E-8 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 768 848 3.6E-27 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SMART SM00382 599 750 2.5E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SMART SM00382 199 345 2.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 633 651 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SUPERFAMILY SSF52540 548 849 1.1E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 9.1E-43 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 724 9.1E-43 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 621 9.1E-43 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 677 695 9.1E-43 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Gene3D G3DSA:1.10.8.60 344 429 1.5E-38 T 06-07-2017 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 858 0.0 T 06-07-2017 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SUPERFAMILY SSF52540 160 547 4.88E-100 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Gene3D G3DSA:3.40.50.300 552 777 3.1E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SMART SM01086 768 857 1.5E-37 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Gene3D G3DSA:1.10.1780.10 1 148 2.4E-41 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Gene3D G3DSA:1.10.8.60 778 858 2.0E-32 T 06-07-2017 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 317 1.2E-11 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.1E-12 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 60 1.7E-12 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 SUPERFAMILY SSF81923 4 156 1.96E-38 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Gene3D G3DSA:3.40.50.300 161 343 1.7E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 Pfam PF07724 AAA domain (Cdc48 subfamily) 598 762 1.4E-56 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS14100 a5344efd22b1b096cac39842af2e51da 868 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 CDO28_RS23540 7fbb29172833cb7956995b8bf6e52a16 497 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 435 1.7E-148 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 Gene3D G3DSA:3.10.180.10 20 176 4.7E-27 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 SUPERFAMILY SSF54593 19 183 2.75E-36 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 SUPERFAMILY SSF54593 182 295 9.02E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 Gene3D G3DSA:3.10.180.10 177 294 6.3E-17 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 30 137 8.5E-7 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS05605 b865ddbc91f4c78f8bb1b58ac288565b 296 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 184 277 3.1E-5 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS17540 fb12da2e15abd56fafa133ada565d5a2 332 SUPERFAMILY SSF53850 21 327 6.15E-68 T 06-07-2017 CDO28_RS17540 fb12da2e15abd56fafa133ada565d5a2 332 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 309 5.5E-58 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS17540 fb12da2e15abd56fafa133ada565d5a2 332 Gene3D G3DSA:3.40.190.100 114 262 2.3E-27 T 06-07-2017 CDO28_RS17540 fb12da2e15abd56fafa133ada565d5a2 332 Gene3D G3DSA:3.40.190.10 263 321 1.1E-16 T 06-07-2017 CDO28_RS17540 fb12da2e15abd56fafa133ada565d5a2 332 Gene3D G3DSA:3.40.190.10 24 111 1.1E-16 T 06-07-2017 CDO28_RS00440 94712e23024422868df72980450d15cd 294 Gene3D G3DSA:3.40.50.720 3 172 1.1E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00440 94712e23024422868df72980450d15cd 294 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 97 1.7E-4 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS00440 94712e23024422868df72980450d15cd 294 Pfam PF09130 Domain of unknown function (DUF1932) 193 261 4.6E-16 T 06-07-2017 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal CDO28_RS00440 94712e23024422868df72980450d15cd 294 SUPERFAMILY SSF48179 166 273 1.28E-32 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS00440 94712e23024422868df72980450d15cd 294 SUPERFAMILY SSF51735 3 164 5.15E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00440 94712e23024422868df72980450d15cd 294 Gene3D G3DSA:1.10.1040.10 173 271 7.6E-33 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS00440 94712e23024422868df72980450d15cd 294 PIRSF PIRSF000103 1 280 4.7E-19 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS09830 c84141211050c5b7a50d6515037c91b8 319 SUPERFAMILY SSF51735 102 285 1.85E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09830 c84141211050c5b7a50d6515037c91b8 319 Gene3D G3DSA:3.40.50.720 100 285 5.2E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09830 c84141211050c5b7a50d6515037c91b8 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 284 3.6E-48 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS09830 c84141211050c5b7a50d6515037c91b8 319 SUPERFAMILY SSF52283 30 129 2.04E-7 T 06-07-2017 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 432 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 357 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 389 1.5E-11 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SUPERFAMILY SSF55874 257 433 4.06E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Gene3D G3DSA:3.30.565.10 259 434 6.0E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SUPERFAMILY SSF47226 8 133 2.36E-21 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Pfam PF00072 Response regulator receiver domain 592 694 5.5E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SMART SM00387 298 435 2.6E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SUPERFAMILY SSF50341 434 566 5.23E-22 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Gene3D G3DSA:3.40.50.2300 589 707 4.5E-35 T 06-07-2017 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SMART SM00448 590 704 7.2E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Gene3D G3DSA:2.30.30.40 522 566 5.8E-9 T 06-07-2017 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Gene3D G3DSA:2.30.30.40 435 456 5.8E-9 T 06-07-2017 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SMART SM00073 7 108 3.3E-4 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SMART SM01231 163 246 1.3E-4 T 06-07-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Pfam PF01584 CheW-like domain 440 569 3.4E-15 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Pfam PF01627 Hpt domain 11 106 7.4E-14 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Gene3D G3DSA:1.20.120.160 7 148 3.6E-22 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SUPERFAMILY SSF52172 589 707 1.24E-34 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 SMART SM00260 427 567 4.9E-9 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS24830 2eb843b2435b09145bb02cc029e907db 708 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 300 434 1.2E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 Pfam PF07884 Vitamin K epoxide reductase family 541 675 6.4E-17 T 06-07-2017 IPR012932 Vitamin K epoxide reductase Reactome: R-HSA-6806664 CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 Gene3D G3DSA:3.90.25.10 194 365 2.0E-20 T 06-07-2017 CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 Pfam PF03779 SPW repeat 790 829 1.8E-5 T 06-07-2017 IPR005530 SPW repeat CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 243 8.1E-22 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 SUPERFAMILY SSF51735 6 345 5.14E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30635 d6ba50ddb65b5f32f53695e6228cab65 847 Gene3D G3DSA:3.40.50.720 9 193 4.2E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 Gene3D G3DSA:3.40.50.720 3 231 2.6E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 231 6.5E-46 T 06-07-2017 CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.4E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18730 a1a1a613c36d95ce22d4bb42d8a2873f 234 SUPERFAMILY SSF51735 3 231 2.28E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31295 2b33f917bb3696f0c7fcb0b80384520e 308 Gene3D G3DSA:3.20.20.140 1 287 2.4E-50 T 06-07-2017 CDO28_RS31295 2b33f917bb3696f0c7fcb0b80384520e 308 Pfam PF04909 Amidohydrolase 74 282 9.5E-36 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS31295 2b33f917bb3696f0c7fcb0b80384520e 308 SUPERFAMILY SSF51556 1 286 1.19E-45 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 189 1.4E-59 T 06-07-2017 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 SUPERFAMILY SSF55347 179 488 5.23E-114 T 06-07-2017 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 4.8E-48 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 4.8E-48 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 4.8E-48 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 329 355 4.8E-48 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 4.8E-48 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 PIRSF PIRSF000110 1 490 1.2E-173 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 06-07-2017 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 11 489 3.3E-180 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 488 1.2E-117 T 06-07-2017 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 10 489 91.09 T 06-07-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 SUPERFAMILY SSF51735 3 192 2.49E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 Gene3D G3DSA:3.30.360.10 189 487 1.2E-125 T 06-07-2017 CDO28_RS07110 d89dced21b30b8b6f948b3dfc771ab33 491 Gene3D G3DSA:3.40.50.720 9 188 5.9E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14470 ab97218e203ae48841215d521b5435a7 314 SUPERFAMILY SSF161098 91 295 3.92E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14470 ab97218e203ae48841215d521b5435a7 314 Gene3D G3DSA:1.10.3720.10 89 304 9.2E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14470 ab97218e203ae48841215d521b5435a7 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 311 4.4E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 76 1.8E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 54 73 2.7E-5 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 43 54 2.7E-5 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 Gene3D G3DSA:1.20.120.530 88 229 1.8E-29 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 SUPERFAMILY SSF46785 17 113 5.61E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 SUPERFAMILY SSF48008 90 228 1.91E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 Gene3D G3DSA:1.10.10.10 14 77 5.0E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 Pfam PF07729 FCD domain 94 220 2.6E-24 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 SMART SM00345 25 83 1.3E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21465 b74ba13cafd802de2df560711373ab37 230 SMART SM00895 94 220 4.4E-25 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS11610 ff97665d71b55210af2876364bb30a32 520 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 44 135 5.5E-22 T 06-07-2017 IPR032093 Phospholipase D, N-terminal CDO28_RS11610 ff97665d71b55210af2876364bb30a32 520 SUPERFAMILY SSF56300 222 514 1.94E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS11610 ff97665d71b55210af2876364bb30a32 520 SUPERFAMILY SSF56300 140 192 1.94E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS11610 ff97665d71b55210af2876364bb30a32 520 Gene3D G3DSA:3.60.21.10 140 516 7.6E-24 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS11610 ff97665d71b55210af2876364bb30a32 520 Pfam PF09423 PhoD-like phosphatase 151 500 1.4E-74 T 06-07-2017 IPR018946 Alkaline phosphatase D-related CDO28_RS07430 59216e063c6f9510be042d1554fc3205 183 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 6 158 28.301 T 06-07-2017 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 CDO28_RS07430 59216e063c6f9510be042d1554fc3205 183 Pfam PF03975 CheD chemotactic sensory transduction 53 150 8.8E-28 T 06-07-2017 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 CDO28_RS07430 59216e063c6f9510be042d1554fc3205 183 SUPERFAMILY SSF64438 9 155 6.68E-48 T 06-07-2017 IPR011324 Cytotoxic necrotizing factor-like, catalytic CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 SUPERFAMILY SSF54427 12 130 1.91E-24 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 168 279 1.7E-11 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 SUPERFAMILY SSF54593 160 282 8.26E-31 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 Gene3D G3DSA:3.10.180.10 171 283 7.5E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 Pfam PF13474 SnoaL-like domain 14 133 3.1E-24 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS08685 23f276ae9030a08039b13ab0ca82bdba 288 Gene3D G3DSA:3.10.450.50 10 130 1.4E-31 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 86 1.8E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 SUPERFAMILY SSF48008 92 226 6.02E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 Gene3D G3DSA:1.20.120.530 91 228 5.0E-28 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 Pfam PF07729 FCD domain 97 219 2.3E-22 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 SMART SM00345 29 87 1.2E-4 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 Gene3D G3DSA:1.10.10.10 21 88 2.3E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 SMART SM00895 97 220 6.5E-18 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31250 e5d7a2244fd187843fb59b26fc7d0eff 259 SUPERFAMILY SSF46785 24 91 2.01E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 Gene3D G3DSA:1.10.260.40 10 60 2.0E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 SUPERFAMILY SSF47413 10 68 6.75E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 SMART SM00354 10 80 8.8E-7 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 57 3.9E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 SUPERFAMILY SSF53822 88 343 7.07E-52 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 Pfam PF13377 Periplasmic binding protein-like domain 185 343 1.9E-31 T 06-07-2017 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 Gene3D G3DSA:3.40.50.2300 61 186 7.8E-21 T 06-07-2017 CDO28_RS28260 6fe7f30f2ece7a6728f3f205c553aa06 355 Gene3D G3DSA:3.40.50.2300 187 326 8.1E-40 T 06-07-2017 CDO28_RS28690 224ce86102324ca31187b6710138ad75 272 SMART SM00460 157 221 3.0E-17 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS28690 224ce86102324ca31187b6710138ad75 272 SUPERFAMILY SSF54001 52 263 2.75E-41 T 06-07-2017 CDO28_RS28690 224ce86102324ca31187b6710138ad75 272 Pfam PF01841 Transglutaminase-like superfamily 119 219 6.5E-27 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS28690 224ce86102324ca31187b6710138ad75 272 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 81 1.7E-22 T 06-07-2017 IPR013589 Bacterial transglutaminase-like, N-terminal CDO28_RS28690 224ce86102324ca31187b6710138ad75 272 Gene3D G3DSA:3.90.260.10 162 232 8.9E-12 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS20900 13db2c1a78fe56adb24894a06ffe8916 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 5.2E-28 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS20900 13db2c1a78fe56adb24894a06ffe8916 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 214 6.3E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20900 13db2c1a78fe56adb24894a06ffe8916 222 Gene3D G3DSA:1.10.3720.10 12 214 6.2E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20900 13db2c1a78fe56adb24894a06ffe8916 222 SUPERFAMILY SSF161098 15 201 1.44E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 SUPERFAMILY SSF54373 289 472 6.08E-60 T 06-07-2017 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 Gene3D G3DSA:3.50.50.60 465 528 1.9E-124 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 Gene3D G3DSA:3.50.50.60 2 125 1.9E-124 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 Gene3D G3DSA:3.50.50.60 186 312 1.9E-124 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 Pfam PF00732 GMC oxidoreductase 4 294 4.3E-85 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 SUPERFAMILY SSF51905 471 529 2.85E-91 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 SUPERFAMILY SSF51905 3 287 2.85E-91 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 PIRSF PIRSF000137 1 531 3.6E-147 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS12175 f2e00a50cb0315d9c8f755302eb4697d 531 Pfam PF05199 GMC oxidoreductase 386 522 1.3E-38 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS30670 4c05e54994ad53b744f8425bf327bdc5 340 Gene3D G3DSA:3.40.50.2300 21 147 2.2E-27 T 06-07-2017 CDO28_RS30670 4c05e54994ad53b744f8425bf327bdc5 340 Gene3D G3DSA:3.40.50.2300 148 312 1.4E-32 T 06-07-2017 CDO28_RS30670 4c05e54994ad53b744f8425bf327bdc5 340 Pfam PF13407 Periplasmic binding protein domain 28 284 1.4E-56 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS30670 4c05e54994ad53b744f8425bf327bdc5 340 SUPERFAMILY SSF53822 24 312 1.32E-61 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS30050 c01d126c9f4cf66ff27b545c3dbe1d67 204 SUPERFAMILY SSF51161 10 202 4.71E-40 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS30050 c01d126c9f4cf66ff27b545c3dbe1d67 204 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 142 1.6E-9 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS30050 c01d126c9f4cf66ff27b545c3dbe1d67 204 Gene3D G3DSA:2.160.10.10 6 198 4.8E-49 T 06-07-2017 CDO28_RS30050 c01d126c9f4cf66ff27b545c3dbe1d67 204 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS30050 c01d126c9f4cf66ff27b545c3dbe1d67 204 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 2 203 7.0E-100 T 06-07-2017 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 Gene3D G3DSA:1.25.40.10 206 267 3.8E-13 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 Gene3D G3DSA:3.40.50.10190 3 84 6.4E-5 T 06-07-2017 IPR001357 BRCT domain CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 SMART SM00028 305 338 19.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 SMART SM00028 203 236 8.8 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 SMART SM00028 237 270 1.4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 SMART SM00028 271 304 1.7 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 Gene3D G3DSA:1.25.40.10 268 341 8.4E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 SUPERFAMILY SSF48452 204 337 3.04E-27 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 Pfam PF13432 Tetratricopeptide repeat 207 268 9.5E-5 T 06-07-2017 CDO28_RS29730 ab64afc9a8c79b1373d79380196b15b1 361 Pfam PF14559 Tetratricopeptide repeat 283 342 4.3E-7 T 06-07-2017 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 SUPERFAMILY SSF53335 121 304 9.13E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 Pfam PF08241 Methyltransferase domain 161 257 8.4E-23 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 SMART SM00418 14 93 7.7E-18 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 Gene3D G3DSA:3.40.50.150 119 307 1.0E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 Gene3D G3DSA:1.10.10.10 8 82 3.5E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 9.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 9.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 9.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 46 9.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 SUPERFAMILY SSF46785 12 91 2.96E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16265 a9e7f31bc4c5ceb06667c5d5c92c4922 340 Pfam PF01022 Bacterial regulatory protein, arsR family 22 62 8.0E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS28425 d9845f489d8d66fa280ced88021d0d76 139 Gene3D G3DSA:3.30.530.20 1 137 4.5E-41 T 06-07-2017 IPR023393 START-like domain CDO28_RS28425 d9845f489d8d66fa280ced88021d0d76 139 SUPERFAMILY SSF55961 1 136 3.14E-40 T 06-07-2017 CDO28_RS28425 d9845f489d8d66fa280ced88021d0d76 139 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 135 8.0E-27 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 Gene3D G3DSA:3.40.190.10 146 268 2.9E-33 T 06-07-2017 CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 416 4.9E-75 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 SUPERFAMILY SSF53850 27 476 1.18E-110 T 06-07-2017 CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 PIRSF PIRSF002741 15 493 9.6E-90 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 Gene3D G3DSA:3.90.76.10 59 145 3.8E-24 T 06-07-2017 CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 75 97 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS24345 ec2153ca978fcdedb5da1954b4bbae64 494 Gene3D G3DSA:3.10.105.10 269 464 5.3E-38 T 06-07-2017 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 Gene3D G3DSA:1.10.560.10 367 519 1.3E-42 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 24 525 3.9E-101 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 SUPERFAMILY SSF52029 186 376 2.27E-84 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 SUPERFAMILY SSF54849 138 210 2.52E-24 T 06-07-2017 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 Gene3D G3DSA:3.50.7.10 188 366 4.1E-100 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 Gene3D G3DSA:1.10.560.10 3 187 2.7E-45 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 SUPERFAMILY SSF48592 406 522 1.33E-76 T 06-07-2017 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 SUPERFAMILY SSF48592 7 134 1.33E-76 T 06-07-2017 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 42.009 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 7.1E-260 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS04510 1b8001edce1aaa72b7b00626431010c2 542 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 Gene3D G3DSA:3.40.50.2300 38 165 7.1E-38 T 06-07-2017 CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 Gene3D G3DSA:3.40.50.2300 204 220 7.1E-38 T 06-07-2017 CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 Pfam PF13407 Periplasmic binding protein domain 40 352 4.2E-63 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 Gene3D G3DSA:3.40.50.2300 221 327 2.5E-15 T 06-07-2017 CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 SUPERFAMILY SSF53822 207 363 4.19E-40 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS14445 9d89d1bdc64a626e0b0d29ca6481d94f 395 SUPERFAMILY SSF53822 39 168 4.19E-40 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 SMART SM00382 33 221 1.6E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 SMART SM00382 283 476 0.0031 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 Pfam PF00005 ABC transporter 275 428 1.8E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 Pfam PF00005 ABC transporter 24 173 1.2E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 SUPERFAMILY SSF52540 268 489 4.46E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 SUPERFAMILY SSF52540 8 231 2.22E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 Gene3D G3DSA:3.40.50.300 269 494 9.6E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27885 3d5c9e2d9598d9740b9f0457c157b465 505 Gene3D G3DSA:3.40.50.300 5 237 1.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 227 318 2.6E-19 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 Gene3D G3DSA:3.40.50.720 40 228 3.0E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 SUPERFAMILY SSF51735 42 222 1.35E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 SUPERFAMILY SSF48179 226 327 6.97E-22 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 47 222 4.1E-58 T 06-07-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 Gene3D G3DSA:1.10.1040.10 358 426 4.1E-8 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 Gene3D G3DSA:1.10.1040.10 229 318 9.6E-18 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS30460 1dbf9e7ec0950fc53b101872adee55ea 438 SUPERFAMILY SSF48179 350 435 3.23E-16 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 Gene3D G3DSA:1.10.10.10 3 80 3.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.2E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 Gene3D G3DSA:3.40.190.10 93 178 2.1E-22 T 06-07-2017 CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 SUPERFAMILY SSF53850 90 298 9.46E-38 T 06-07-2017 CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 Gene3D G3DSA:3.40.190.10 179 261 3.8E-4 T 06-07-2017 CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 Pfam PF03466 LysR substrate binding domain 88 294 1.8E-39 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS31630 37af0dbf6cf54815656534fa19849a4e 310 SUPERFAMILY SSF46785 4 83 5.92E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS03280 cc3f1c0ca7590841eefe94d26e3a23df 148 Gene3D G3DSA:3.90.1010.10 5 142 1.8E-18 T 06-07-2017 CDO28_RS03280 cc3f1c0ca7590841eefe94d26e3a23df 148 Pfam PF01592 NifU-like N terminal domain 6 120 1.0E-8 T 06-07-2017 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CDO28_RS03280 cc3f1c0ca7590841eefe94d26e3a23df 148 SUPERFAMILY SSF82649 1 141 2.41E-41 T 06-07-2017 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 Pfam PF00034 Cytochrome c 74 173 5.1E-7 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 Gene3D G3DSA:1.10.760.10 70 175 9.4E-37 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 SUPERFAMILY SSF46626 70 176 5.38E-31 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 PRINTS PR00604 Class IA and IB cytochrome C signature 129 145 1.0E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 PRINTS PR00604 Class IA and IB cytochrome C signature 148 158 1.0E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 PRINTS PR00604 Class IA and IB cytochrome C signature 95 110 1.0E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 PRINTS PR00604 Class IA and IB cytochrome C signature 165 173 1.0E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS09480 8bf2e6bcd56d0749a672738a38399271 259 PRINTS PR00604 Class IA and IB cytochrome C signature 82 89 1.0E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31285 a873ea2d660ee578403da5359a44bf8d 457 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 21 428 8.0E-87 T 06-07-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CDO28_RS31285 a873ea2d660ee578403da5359a44bf8d 457 SUPERFAMILY SSF50475 6 298 5.89E-76 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS31285 a873ea2d660ee578403da5359a44bf8d 457 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 22 404 3.2E-98 T 06-07-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CDO28_RS31285 a873ea2d660ee578403da5359a44bf8d 457 Gene3D G3DSA:3.40.1670.10 316 428 9.1E-32 T 06-07-2017 CDO28_RS31285 a873ea2d660ee578403da5359a44bf8d 457 SUPERFAMILY SSF143968 303 454 2.48E-37 T 06-07-2017 CDO28_RS31080 06be3477d319f7dcabff15df4b157ed6 141 PIRSF PIRSF008711 17 141 4.1E-67 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31080 06be3477d319f7dcabff15df4b157ed6 141 Gene3D G3DSA:2.60.290.11 9 141 1.3E-56 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31080 06be3477d319f7dcabff15df4b157ed6 141 SUPERFAMILY SSF89232 19 141 4.97E-50 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31080 06be3477d319f7dcabff15df4b157ed6 141 Pfam PF07100 Anabaena sensory rhodopsin transducer 21 139 5.8E-56 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS33830 25edc589639ccbd328fdd59126f18508 343 Gene3D G3DSA:3.40.50.2300 156 292 5.5E-34 T 06-07-2017 CDO28_RS33830 25edc589639ccbd328fdd59126f18508 343 Pfam PF13407 Periplasmic binding protein domain 32 288 7.2E-55 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS33830 25edc589639ccbd328fdd59126f18508 343 Gene3D G3DSA:3.40.50.2300 30 155 7.6E-28 T 06-07-2017 CDO28_RS33830 25edc589639ccbd328fdd59126f18508 343 SUPERFAMILY SSF53822 29 343 7.28E-83 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS19050 0018dd58385db1cd6d392399eac94194 79 SUPERFAMILY SSF53850 4 75 1.7E-11 T 06-07-2017 CDO28_RS19050 0018dd58385db1cd6d392399eac94194 79 Pfam PF03466 LysR substrate binding domain 5 72 8.6E-11 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19050 0018dd58385db1cd6d392399eac94194 79 Gene3D G3DSA:3.40.190.10 4 33 2.0E-8 T 06-07-2017 CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 SUPERFAMILY SSF55920 151 380 1.96E-50 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 Gene3D G3DSA:3.90.230.10 152 377 2.4E-37 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 Pfam PF00557 Metallopeptidase family M24 160 363 1.8E-25 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 Gene3D G3DSA:3.40.350.10 1 150 2.6E-36 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 SUPERFAMILY SSF53092 1 151 1.83E-32 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal CDO28_RS15490 1422ed2c54cd34bf4ea41916193a251d 383 Pfam PF01321 Creatinase/Prolidase N-terminal domain 13 152 5.6E-22 T 06-07-2017 IPR000587 Creatinase, N-terminal GO:0016787 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 428 2.9E-104 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 3 431 1.0E-188 T 06-07-2017 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0006461|GO:0009399 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 SUPERFAMILY SSF53807 8 433 5.23E-118 T 06-07-2017 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 Gene3D G3DSA:3.40.50.1980 164 265 9.2E-27 T 06-07-2017 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 Gene3D G3DSA:3.40.50.1980 19 161 3.1E-40 T 06-07-2017 CDO28_RS23175 f275502820815f3ce046301d7ded7ab2 441 Gene3D G3DSA:3.40.50.1980 294 404 4.2E-31 T 06-07-2017 CDO28_RS03465 1082c81b7ace0fb6d2de072933551697 221 SUPERFAMILY SSF56784 1 217 8.81E-51 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS03465 1082c81b7ace0fb6d2de072933551697 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 187 1.5E-28 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS03465 1082c81b7ace0fb6d2de072933551697 221 Gene3D G3DSA:1.10.150.240 19 73 5.0E-6 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS03465 1082c81b7ace0fb6d2de072933551697 221 Gene3D G3DSA:3.40.50.1000 74 218 4.0E-37 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS03465 1082c81b7ace0fb6d2de072933551697 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 86 181 4.2E-12 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 356 364 - T 06-07-2017 IPR018120 Glycoside hydrolase family 1, active site CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 Pfam PF00232 Glycosyl hydrolase family 1 10 448 2.7E-170 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 TIGRFAM TIGR03356 BGL: beta-galactosidase 12 443 1.8E-183 T 06-07-2017 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 16 30 - T 06-07-2017 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 SUPERFAMILY SSF51445 9 448 7.77E-153 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 Gene3D G3DSA:3.20.20.80 8 447 7.0E-151 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 PRINTS PR00131 Glycosyl hydrolase family 1 signature 356 364 2.2E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 PRINTS PR00131 Glycosyl hydrolase family 1 signature 291 305 2.2E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 PRINTS PR00131 Glycosyl hydrolase family 1 signature 376 387 2.2E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 PRINTS PR00131 Glycosyl hydrolase family 1 signature 397 414 2.2E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS12650 ca417a80fe43f88bc577ca316017c174 458 PRINTS PR00131 Glycosyl hydrolase family 1 signature 421 433 2.2E-20 T 06-07-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CDO28_RS04915 514a319569acb22627668b23f6700012 205 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 10 184 2.8E-55 T 06-07-2017 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CDO28_RS04915 514a319569acb22627668b23f6700012 205 Pfam PF03641 Possible lysine decarboxylase 53 183 2.8E-42 T 06-07-2017 IPR031100 LOG family CDO28_RS04915 514a319569acb22627668b23f6700012 205 SUPERFAMILY SSF102405 7 186 3.21E-60 T 06-07-2017 CDO28_RS04915 514a319569acb22627668b23f6700012 205 Gene3D G3DSA:3.40.50.450 6 184 6.9E-66 T 06-07-2017 CDO28_RS22405 3f417b39d56293d4fbc5336fc9c73548 311 SUPERFAMILY SSF161098 91 294 3.79E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22405 3f417b39d56293d4fbc5336fc9c73548 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 307 9.7E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22405 3f417b39d56293d4fbc5336fc9c73548 311 Gene3D G3DSA:1.10.3720.10 92 298 1.5E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09840 95b1c75db5df2a4a77e5b5e3786b2337 114 SMART SM00347 22 114 6.8E-4 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09840 95b1c75db5df2a4a77e5b5e3786b2337 114 Pfam PF01047 MarR family 29 88 7.7E-12 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09840 95b1c75db5df2a4a77e5b5e3786b2337 114 Gene3D G3DSA:1.10.10.10 24 103 4.2E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09840 95b1c75db5df2a4a77e5b5e3786b2337 114 SUPERFAMILY SSF46785 23 107 1.17E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 SUPERFAMILY SSF53697 108 254 2.0E-9 T 06-07-2017 CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 73 1.7E-9 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 SUPERFAMILY SSF46689 7 80 3.23E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 Pfam PF01380 SIS domain 129 253 1.2E-11 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 Gene3D G3DSA:3.40.50.10490 69 225 4.4E-8 T 06-07-2017 CDO28_RS16900 fab4331b508955242de8de54cf8fa9dd 280 Gene3D G3DSA:1.10.10.10 4 68 4.3E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30295 761dee64b2fa1b9f3232084e78a0906b 391 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 40 354 6.3E-134 T 06-07-2017 IPR017778 ABC transporter, urea, permease protein, UrtC CDO28_RS30295 761dee64b2fa1b9f3232084e78a0906b 391 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 344 4.4E-39 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 PIRSF PIRSF019251 1 472 1.1E-188 T 06-07-2017 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 Pfam PF06114 Domain of unknown function (DUF955) 190 310 4.1E-20 T 06-07-2017 IPR010359 HTH domain, IrrE-type CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 SUPERFAMILY SSF47413 6 71 7.78E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 Gene3D G3DSA:1.10.260.40 8 73 2.3E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 Pfam PF01381 Helix-turn-helix 13 66 7.8E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 SMART SM00530 11 66 3.2E-14 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS29995 72654944bdfc3d081386b202d567c4ce 472 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 311 467 3.7E-65 T 06-07-2017 IPR018653 Domain of unknown function DUF2083,transcriptional regulator CDO28_RS08105 12a47f8be105798c57dab7bea002bd13 232 Pfam PF00156 Phosphoribosyl transferase domain 61 155 2.5E-16 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS08105 12a47f8be105798c57dab7bea002bd13 232 SUPERFAMILY SSF53271 18 223 3.93E-49 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS08105 12a47f8be105798c57dab7bea002bd13 232 Gene3D G3DSA:3.40.50.2020 12 219 5.2E-51 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS08105 12a47f8be105798c57dab7bea002bd13 232 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 232 29.379 T 06-07-2017 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS08105 12a47f8be105798c57dab7bea002bd13 232 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 19 186 3.0E-33 T 06-07-2017 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:1.10.486.10 646 781 8.7E-13 T 06-07-2017 CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Pfam PF00580 UvrD/REP helicase N-terminal domain 21 476 9.3E-52 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:3.40.50.300 499 635 8.9E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:3.40.50.300 792 957 8.9E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 SUPERFAMILY SSF52980 1019 1152 9.12E-5 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Pfam PF13361 UvrD-like helicase C-terminal domain 776 897 1.2E-14 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 22 1172 0.0 T 06-07-2017 IPR014151 DNA helicase, AddA type CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 SUPERFAMILY SSF52540 876 905 5.15E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 SUPERFAMILY SSF52540 359 824 5.15E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 SUPERFAMILY SSF52540 21 86 5.15E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 SUPERFAMILY SSF52540 125 207 5.15E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:3.40.50.300 20 82 3.5E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:3.40.50.300 369 475 3.5E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Gene3D G3DSA:3.40.50.300 133 195 3.5E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10470 7eb6cdaa8b3c6a0e506930fb1758d482 1189 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1020 1171 8.1E-10 T 06-07-2017 CDO28_RS04250 92d23c5892fb26f26bfd9f589628f86f 273 Gene3D G3DSA:3.90.226.10 17 271 1.4E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS04250 92d23c5892fb26f26bfd9f589628f86f 273 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 272 3.2E-48 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS04250 92d23c5892fb26f26bfd9f589628f86f 273 SUPERFAMILY SSF52096 16 271 4.61E-71 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 85 1586 0.0 T 06-07-2017 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 SUPERFAMILY SSF51735 1072 1200 4.99E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 SUPERFAMILY SSF51735 934 1036 4.99E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 SUPERFAMILY SSF53223 744 929 6.62E-23 T 06-07-2017 CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 Gene3D G3DSA:3.40.50.720 931 1042 1.7E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 Gene3D G3DSA:3.40.50.720 1097 1181 1.7E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10750 5fe9c3eb22bdc62f2e815e6478e20d23 1595 PIRSF PIRSF036761 1 1594 0.0 T 06-07-2017 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 562 586 2.6E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 921 1030 8.4E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 754 920 7.4E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 159 324 2.3E-24 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 624 738 2.6E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 332 386 3.2E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 5 155 8.2E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Gene3D G3DSA:2.150.10.10 405 506 2.6E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 474 595 2.62E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 722 740 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 200 310 2.62E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 275 293 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 29 47 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 624 815 4.26E-19 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 909 1067 8.37E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 567 585 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 331 447 5.23E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 PRINTS PR00313 NodO calcium binding signature 106 114 1.2E-9 T 06-07-2017 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 PRINTS PR00313 NodO calcium binding signature 334 343 1.2E-9 T 06-07-2017 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 PRINTS PR00313 NodO calcium binding signature 85 96 1.2E-9 T 06-07-2017 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 PRINTS PR00313 NodO calcium binding signature 161 169 1.2E-9 T 06-07-2017 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 4 121 3.53E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 877 895 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 85 234 9.52E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 726 741 3.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 782 792 42.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 544 560 25.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 799 814 3.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 479 491 12.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 33 49 0.36 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 106 121 0.013 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 22 0.83 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 935 951 1.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 333 348 19.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 87 103 0.031 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 406 423 2.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 954 970 0.031 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 270 286 0.13 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 871 888 1.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 625 642 24.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 425 440 0.29 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 644 660 0.042 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 712 724 36.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 160 172 0.98 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 179 195 0.05 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 251 266 28.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 197 213 1.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 562 578 2.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 853 869 1.4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 352 367 0.59 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30990 c0ab11d4102bbfb3a18ed64c77770a68 1072 SUPERFAMILY SSF51120 778 929 3.14E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 Pfam PF01578 Cytochrome C assembly protein 89 295 2.2E-52 T 06-07-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 643 1.5E-191 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.6E-97 T 06-07-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 633 646 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 3.5E-68 T 06-07-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS05425 c852ab4cc1af8a4a182044f36fd3e792 676 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 640 4.7E-116 T 06-07-2017 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 Gene3D G3DSA:3.40.50.300 254 503 3.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 SMART SM00382 37 223 4.0E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 Pfam PF00005 ABC transporter 29 173 1.9E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 Pfam PF00005 ABC transporter 278 440 1.9E-8 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 SUPERFAMILY SSF52540 11 228 1.43E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 Gene3D G3DSA:3.40.50.300 9 228 1.2E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 SUPERFAMILY SSF52540 251 354 1.12E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01005 e3ea9f785f7f0b97831357d2af33db64 528 SUPERFAMILY SSF52540 382 499 1.12E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 Gene3D G3DSA:2.30.30.180 106 171 1.1E-11 T 06-07-2017 IPR028998 Ribosome maturation factor RimP, C-terminal CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 SUPERFAMILY SSF75420 15 100 2.09E-22 T 06-07-2017 IPR028989 Ribosome maturation factor RimP, N-terminal CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 23 174 22.062 T 06-07-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 SUPERFAMILY SSF74942 101 175 4.71E-15 T 06-07-2017 IPR028998 Ribosome maturation factor RimP, C-terminal CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 Pfam PF02576 Putative ribosome maturation factor RimP 28 170 3.8E-45 T 06-07-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 CDO28_RS09405 2397ebbf7d91a1079ab99a3b51189e82 205 Gene3D G3DSA:3.30.300.70 20 97 1.4E-25 T 06-07-2017 IPR028989 Ribosome maturation factor RimP, N-terminal CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 Pfam PF00155 Aminotransferase class I and II 169 427 2.7E-19 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 SMART SM00345 19 78 1.4E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 SUPERFAMILY SSF46785 11 87 3.27E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 SUPERFAMILY SSF53383 72 462 5.59E-60 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 78 8.2E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 Gene3D G3DSA:3.40.640.10 158 352 2.2E-43 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS00385 744481c5bd307aacdccc44beb6de1dd2 472 Gene3D G3DSA:1.10.10.10 11 79 7.8E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 SUPERFAMILY SSF52540 6 230 3.44E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 SUPERFAMILY SSF52540 242 488 1.09E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 Gene3D G3DSA:3.40.50.300 4 237 3.3E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 Gene3D G3DSA:3.40.50.300 256 488 9.8E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 Pfam PF00005 ABC transporter 275 427 1.4E-11 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 Pfam PF00005 ABC transporter 24 171 5.8E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 SMART SM00382 284 480 1.4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31225 02fc2e9778e021ab534d536bc388908d 508 SMART SM00382 31 219 6.7E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 Pfam PF03466 LysR substrate binding domain 88 292 1.7E-43 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 Gene3D G3DSA:3.40.190.10 177 261 2.5E-23 T 06-07-2017 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 SUPERFAMILY SSF53850 89 297 1.81E-46 T 06-07-2017 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 Gene3D G3DSA:1.10.10.10 4 81 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 SUPERFAMILY SSF46785 4 86 2.82E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 Gene3D G3DSA:3.40.190.10 92 176 3.9E-21 T 06-07-2017 CDO28_RS14960 c82e37f1943c18471966a5df4e99255e 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.3E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 Pfam PF13458 Periplasmic binding protein 22 363 1.3E-64 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 Gene3D G3DSA:3.40.50.2300 147 298 1.3E-18 T 06-07-2017 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 Gene3D G3DSA:3.40.50.2300 17 144 2.1E-36 T 06-07-2017 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 Gene3D G3DSA:3.40.50.2300 299 353 2.1E-36 T 06-07-2017 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 SUPERFAMILY SSF53822 22 369 2.75E-76 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 85 95 1.4E-9 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 23 39 1.4E-9 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 1.4E-9 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS30125 f27b7912f32167390c5c20cc7420576a 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 1.4E-9 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS20385 6db88ca86edc91f9fdfaf005df645273 422 Gene3D G3DSA:3.40.190.10 168 354 1.0E-31 T 06-07-2017 CDO28_RS20385 6db88ca86edc91f9fdfaf005df645273 422 Pfam PF13416 Bacterial extracellular solute-binding protein 58 359 5.2E-30 T 06-07-2017 CDO28_RS20385 6db88ca86edc91f9fdfaf005df645273 422 SUPERFAMILY SSF53850 37 420 1.81E-63 T 06-07-2017 CDO28_RS20385 6db88ca86edc91f9fdfaf005df645273 422 Gene3D G3DSA:3.40.190.10 39 167 2.3E-19 T 06-07-2017 CDO28_RS06125 27bd93cbe886755de83a61df826d659e 226 Gene3D G3DSA:3.40.50.300 3 220 1.2E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06125 27bd93cbe886755de83a61df826d659e 226 SMART SM00382 26 206 3.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS06125 27bd93cbe886755de83a61df826d659e 226 SUPERFAMILY SSF52540 3 220 6.57E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06125 27bd93cbe886755de83a61df826d659e 226 Pfam PF00005 ABC transporter 27 162 3.3E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 309 7.5E-22 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 279 6.1E-55 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 Gene3D G3DSA:3.40.50.720 4 111 2.4E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 SUPERFAMILY SSF52283 3 128 8.69E-24 T 06-07-2017 CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 SUPERFAMILY SSF51735 97 279 3.2E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24245 64c9769da9f7d379d24f03170eee2b63 324 Gene3D G3DSA:3.40.50.720 112 282 1.8E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 PIRSF PIRSF039144 1 112 4.3E-55 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 Gene3D G3DSA:3.30.70.120 1 112 3.0E-51 T 06-07-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 PRINTS PR00340 P-II protein signature 83 103 5.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 PRINTS PR00340 P-II protein signature 2 17 5.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 PRINTS PR00340 P-II protein signature 23 41 5.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 PRINTS PR00340 P-II protein signature 52 75 5.3E-45 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 06-07-2017 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.1E-43 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 SUPERFAMILY SSF54913 1 112 2.7E-46 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 06-07-2017 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 CDO28_RS01170 2682300c8227c64942fb55d71b35902b 112 SMART SM00938 4 105 2.9E-67 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 Hamap MF_00323 Ferrochelatase [hemH]. 16 338 37.391 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 SUPERFAMILY SSF53800 16 341 2.62E-105 T 06-07-2017 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 Gene3D G3DSA:3.40.50.1400 17 219 2.2E-66 T 06-07-2017 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 Gene3D G3DSA:3.40.50.1400 220 339 2.4E-35 T 06-07-2017 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 ProSitePatterns PS00534 Ferrochelatase signature. 207 226 - T 06-07-2017 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 Pfam PF00762 Ferrochelatase 18 337 6.4E-108 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDO28_RS13100 46639981a73c5fa00af0ec8be61bdac8 342 TIGRFAM TIGR00109 hemH: ferrochelatase 16 338 4.0E-84 T 06-07-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDO28_RS07840 cb95139df10dfdf60d4f4d584183ce90 167 SUPERFAMILY SSF55797 43 162 2.09E-15 T 06-07-2017 IPR014044 CAP domain CDO28_RS07840 cb95139df10dfdf60d4f4d584183ce90 167 Pfam PF00188 Cysteine-rich secretory protein family 50 164 2.0E-15 T 06-07-2017 IPR014044 CAP domain CDO28_RS07840 cb95139df10dfdf60d4f4d584183ce90 167 Gene3D G3DSA:3.40.33.10 41 160 2.5E-8 T 06-07-2017 IPR014044 CAP domain CDO28_RS01905 68a2ae97d430f6c7d8fac01436868232 436 Pfam PF05065 Phage capsid family 142 419 8.1E-39 T 06-07-2017 IPR024455 Phage capsid CDO28_RS01905 68a2ae97d430f6c7d8fac01436868232 436 SUPERFAMILY SSF56563 134 419 1.83E-47 T 06-07-2017 CDO28_RS01905 68a2ae97d430f6c7d8fac01436868232 436 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 15 419 2.3E-67 T 06-07-2017 IPR006444 Phage major capsid protein, HK97 CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 TIGRFAM TIGR00260 thrC: threonine synthase 72 425 1.3E-87 T 06-07-2017 IPR004450 Threonine synthase-like CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 SUPERFAMILY SSF53686 2 461 2.27E-165 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 Gene3D G3DSA:3.90.1380.10 2 86 1.7E-30 T 06-07-2017 IPR029144 Threonine synthase, N-terminal CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 Gene3D G3DSA:3.40.50.1100 112 203 2.8E-10 T 06-07-2017 CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 Gene3D G3DSA:3.40.50.1100 204 436 1.3E-100 T 06-07-2017 CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 103 117 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 Pfam PF14821 Threonine synthase N terminus 3 81 1.7E-28 T 06-07-2017 IPR029144 Threonine synthase, N-terminal CDO28_RS05960 663cc169049efe156f1128bf6a0050e3 466 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 99 397 2.6E-18 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 SUPERFAMILY SSF47769 2 64 2.98E-18 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Pfam PF13191 AAA ATPase domain 282 469 7.0E-23 T 06-07-2017 CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 88 261 1.8E-26 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 SUPERFAMILY SSF55073 84 264 5.18E-51 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Pfam PF00536 SAM domain (Sterile alpha motif) 2 59 4.0E-17 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 SUPERFAMILY SSF52540 280 544 2.5E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 SMART SM00044 47 252 3.6E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Gene3D G3DSA:3.40.50.300 423 471 3.9E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Gene3D G3DSA:3.40.50.300 277 356 3.9E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 SMART SM00454 2 61 5.4E-17 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Gene3D G3DSA:1.10.150.50 2 59 9.0E-20 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS25470 4dfbb3d42def70eca2444bec35c3a2a0 1117 Gene3D G3DSA:3.30.70.1230 86 263 5.5E-38 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS09085 453e2e1b0c3b9dee3f97e519afa3acef 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 9.8E-22 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS09085 453e2e1b0c3b9dee3f97e519afa3acef 328 Gene3D G3DSA:3.40.50.720 1 141 5.6E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09085 453e2e1b0c3b9dee3f97e519afa3acef 328 SUPERFAMILY SSF51735 2 155 4.12E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09085 453e2e1b0c3b9dee3f97e519afa3acef 328 SUPERFAMILY SSF55347 128 294 4.09E-34 T 06-07-2017 CDO28_RS09085 453e2e1b0c3b9dee3f97e519afa3acef 328 Gene3D G3DSA:3.30.360.10 142 326 2.2E-34 T 06-07-2017 CDO28_RS21445 0690b1fa08b476bac1ae0fc503ca7b2d 281 Gene3D G3DSA:3.40.50.1820 34 267 1.3E-41 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21445 0690b1fa08b476bac1ae0fc503ca7b2d 281 SUPERFAMILY SSF53474 5 261 9.46E-40 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21445 0690b1fa08b476bac1ae0fc503ca7b2d 281 Pfam PF07859 alpha/beta hydrolase fold 66 179 4.9E-15 T 06-07-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 SUPERFAMILY SSF53850 91 296 5.19E-33 T 06-07-2017 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.3E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.3E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.3E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 Gene3D G3DSA:3.40.190.10 92 178 5.4E-12 T 06-07-2017 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 Gene3D G3DSA:3.40.190.10 179 268 1.6E-30 T 06-07-2017 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.6E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 Pfam PF03466 LysR substrate binding domain 89 293 8.3E-38 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 SUPERFAMILY SSF46785 2 113 1.02E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15935 5fe7e633d00d2cdfd3abd48ff6b74bbf 302 Gene3D G3DSA:1.10.10.10 3 83 5.7E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 SUPERFAMILY SSF50249 405 536 2.91E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 533 6.7E-235 T 06-07-2017 IPR026333 ATP-dependent DNA ligase, PP_1105 family CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Pfam PF04675 DNA ligase N terminus 3 157 2.2E-7 T 06-07-2017 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Gene3D G3DSA:2.40.50.140 405 536 2.1E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Gene3D G3DSA:3.30.470.30 230 346 1.2E-20 T 06-07-2017 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 225 233 - T 06-07-2017 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Pfam PF01068 ATP dependent DNA ligase domain 214 400 1.7E-26 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 SUPERFAMILY SSF56091 201 400 2.3E-44 T 06-07-2017 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Gene3D G3DSA:3.30.1490.70 198 229 2.8E-16 T 06-07-2017 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Gene3D G3DSA:3.30.1490.70 357 401 2.8E-16 T 06-07-2017 CDO28_RS12565 7808877e8a07e1b957f7ebe2a23595ed 537 Pfam PF04679 ATP dependent DNA ligase C terminal region 421 518 2.5E-11 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SUPERFAMILY SSF55874 234 400 3.14E-42 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SMART SM00387 292 402 6.2E-35 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SMART SM00448 568 687 1.9E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 399 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 380 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 1.3E-15 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Gene3D G3DSA:1.10.287.130 185 240 1.9E-17 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SMART SM00388 180 245 9.3E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 293 400 1.1E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Pfam PF00072 Response regulator receiver domain 570 687 1.6E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Gene3D G3DSA:3.30.450.20 118 184 3.0E-4 T 06-07-2017 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Gene3D G3DSA:3.40.50.2300 570 691 1.2E-28 T 06-07-2017 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SUPERFAMILY SSF55785 58 158 2.51E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SUPERFAMILY SSF52172 570 692 6.69E-28 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 242 3.1E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 Gene3D G3DSA:3.30.565.10 246 401 3.9E-44 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08580 3cba652767653421ec88c49269ec5e5c 696 SUPERFAMILY SSF47384 168 245 9.81E-19 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 Gene3D G3DSA:3.30.950.10 130 258 2.2E-45 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 19 33 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 16 227 6.2E-43 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 94 127 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 SUPERFAMILY SSF53790 11 257 1.16E-72 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 Gene3D G3DSA:3.40.1010.10 13 129 7.1E-41 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS17635 69786ac58ed972d72a5f8786d121e292 279 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 14 251 7.8E-86 T 06-07-2017 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 Pfam PF00107 Zinc-binding dehydrogenase 171 279 4.6E-20 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 SMART SM00829 7 337 0.0096 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 Gene3D G3DSA:3.40.50.720 165 278 3.5E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 Gene3D G3DSA:3.90.180.10 1 164 2.0E-46 T 06-07-2017 IPR011032 GroES-like CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 SUPERFAMILY SSF50129 1 170 1.98E-45 T 06-07-2017 IPR011032 GroES-like CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 SUPERFAMILY SSF51735 138 305 9.54E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 129 2.5E-28 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS28500 1713c2dd98eeb01c91034b31d2c9255f 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 138 158 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 197 207 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 464 480 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 PRINTS PR00301 70kDa heat shock protein signature 383 402 6.1E-82 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 SUPERFAMILY SSF100934 502 604 1.83E-18 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.30.420.40 119 191 1.5E-66 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.30.420.40 4 52 1.5E-66 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 38.087 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.90.640.10 225 310 3.0E-33 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.30.420.40 192 224 3.0E-37 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.30.420.40 314 356 3.0E-37 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:1.20.1270.10 528 600 5.6E-30 T 06-07-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:3.30.30.30 53 106 1.6E-29 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Gene3D G3DSA:2.60.34.10 385 527 1.0E-73 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 SUPERFAMILY SSF53067 186 377 1.23E-69 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 SUPERFAMILY SSF53067 4 184 8.74E-68 T 06-07-2017 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 Pfam PF00012 Hsp70 protein 4 601 1.1E-279 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 SUPERFAMILY SSF100920 379 535 1.44E-62 T 06-07-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CDO28_RS09695 69ce4f967c1e5bfafd82fcadaf171bd7 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 1.6E-301 T 06-07-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 SUPERFAMILY SSF51905 5 176 5.15E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 SUPERFAMILY SSF51905 284 355 5.15E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 SUPERFAMILY SSF54373 183 286 1.14E-20 T 06-07-2017 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 Gene3D G3DSA:3.30.9.10 169 340 2.0E-13 T 06-07-2017 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 Pfam PF13450 NAD(P)-binding Rossmann-like domain 10 41 8.5E-6 T 06-07-2017 CDO28_RS22965 0cb3e0f70478f3b74ba7a0e581d14247 435 Gene3D G3DSA:3.50.50.60 1 168 1.4E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 SUPERFAMILY SSF53474 312 514 2.99E-43 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 Gene3D G3DSA:3.10.180.10 3 126 5.4E-27 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 Gene3D G3DSA:3.10.180.10 140 304 6.2E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 SUPERFAMILY SSF54593 3 290 5.87E-34 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 264 1.8E-14 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS14750 5d36ce9018a6316170d2e5a064f1cf16 518 Gene3D G3DSA:3.40.50.1820 305 515 9.7E-64 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 Gene3D G3DSA:1.10.101.10 150 208 8.4E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 Gene3D G3DSA:1.10.101.10 257 316 6.7E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 SUPERFAMILY SSF47090 250 313 5.81E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 Pfam PF01471 Putative peptidoglycan binding domain 259 313 9.2E-11 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 Pfam PF01471 Putative peptidoglycan binding domain 152 204 5.8E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS05520 a23e8d1654e651292b6f6d25d0773b55 319 SUPERFAMILY SSF47090 150 205 1.88E-10 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS24910 11145f019c60449f84820a44cb8e5ee6 151 Gene3D G3DSA:1.10.10.10 45 100 5.4E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24910 11145f019c60449f84820a44cb8e5ee6 151 Pfam PF01527 Transposase 51 134 6.6E-10 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS24910 11145f019c60449f84820a44cb8e5ee6 151 SUPERFAMILY SSF46689 51 146 1.31E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS18165 a1bad2182ce5ddec08c3b3551534bf63 64 Pfam PF05717 IS66 Orf2 like protein 1 53 1.0E-16 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Gene3D G3DSA:3.30.1300.30 434 522 8.6E-21 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 237 259 3.8E-8 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 374 392 7.4E-7 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 54 76 5.4E-8 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 290 312 3.2E-10 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF101967 364 394 3.4E-5 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF101967 114 262 1.31E-6 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Pfam PF03895 YadA-like C-terminal region 447 523 2.2E-15 T 06-07-2017 IPR005594 YadA-like, C-terminal CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Gene3D G3DSA:2.150.10.10 366 394 6.4E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Gene3D G3DSA:1.20.5.170 289 332 1.3E-9 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 Gene3D G3DSA:1.20.5.170 237 269 6.6E-4 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF101967 41 79 5.36E-5 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF54523 434 522 4.24E-21 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF54523 384 392 4.24E-21 T 06-07-2017 CDO28_RS08225 566ce2b412aa3bc1203acd0095dc1061 525 SUPERFAMILY SSF101967 285 315 1.12E-6 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 645 53.366 T 06-07-2017 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Gene3D G3DSA:3.40.50.980 267 424 8.1E-26 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Pfam PF00501 AMP-binding enzyme 81 522 2.8E-91 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 79 8.7E-21 T 06-07-2017 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Gene3D G3DSA:3.30.300.30 518 622 6.2E-23 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 SUPERFAMILY SSF56801 12 644 4.71E-179 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Gene3D G3DSA:3.40.50.980 77 266 5.3E-45 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Gene3D G3DSA:2.30.38.10 439 515 9.5E-10 T 06-07-2017 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 06-07-2017 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 CDO28_RS10710 8ca0f40d50846086412f12aabbde1126 649 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 6.1E-24 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS03830 d813eae87624bdb210c68d17e95dbcad 385 SUPERFAMILY SSF53383 8 384 3.16E-99 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS03830 d813eae87624bdb210c68d17e95dbcad 385 Pfam PF00155 Aminotransferase class I and II 31 380 5.2E-57 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS03830 d813eae87624bdb210c68d17e95dbcad 385 Gene3D G3DSA:3.90.1150.10 255 384 2.9E-31 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS03830 d813eae87624bdb210c68d17e95dbcad 385 Gene3D G3DSA:3.40.640.10 45 254 1.3E-62 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS09965 69460994d41dac1186bdc1e9b2efa3d6 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS09965 69460994d41dac1186bdc1e9b2efa3d6 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS07410 69460994d41dac1186bdc1e9b2efa3d6 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS07410 69460994d41dac1186bdc1e9b2efa3d6 358 Pfam PF01609 Transposase DDE domain 99 326 6.9E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 SMART SM00382 28 219 2.0E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 Gene3D G3DSA:3.40.50.300 3 231 1.5E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 Gene3D G3DSA:2.40.50.100 240 284 3.1E-4 T 06-07-2017 CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 Gene3D G3DSA:2.40.50.100 344 359 3.1E-4 T 06-07-2017 CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 Pfam PF00005 ABC transporter 19 161 7.4E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 SUPERFAMILY SSF52540 4 244 1.66E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16070 bcf1fe1fd77aa1ab6a16b82a6533288a 372 SUPERFAMILY SSF50331 237 358 1.08E-11 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 Pfam PF13545 Crp-like helix-turn-helix domain 138 208 8.6E-21 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 SMART SM00100 1 128 2.5E-11 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 159 175 6.3E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 175 190 6.3E-12 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 ProSitePatterns PS00042 Crp-type HTH domain signature. 161 184 - T 06-07-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 SMART SM00419 153 202 1.2E-16 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 SUPERFAMILY SSF51206 28 129 1.83E-20 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 SUPERFAMILY SSF46785 137 210 1.46E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 Gene3D G3DSA:1.10.10.10 141 210 6.9E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 Gene3D G3DSA:2.60.120.10 30 140 1.0E-15 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS22570 113b432282a418fae3bdeb756496c969 211 Pfam PF00027 Cyclic nucleotide-binding domain 30 107 1.1E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 Pfam PF13091 PLD-like domain 330 448 5.0E-25 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 Pfam PF13091 PLD-like domain 137 245 8.3E-15 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 SUPERFAMILY SSF56024 275 472 3.93E-43 T 06-07-2017 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 60 7.6E-5 T 06-07-2017 IPR027379 Cardiolipin synthase N-terminal CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 SUPERFAMILY SSF56024 113 317 6.91E-42 T 06-07-2017 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 Gene3D G3DSA:3.30.870.10 114 321 1.2E-40 T 06-07-2017 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 Gene3D G3DSA:3.30.870.10 327 478 5.2E-32 T 06-07-2017 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 SMART SM00155 220 247 5.6 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS02765 2e7a862eec82c7212d0b083f8fc50bb2 487 SMART SM00155 400 427 3.4E-9 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 212 240 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 86 317 8.0E-63 T 06-07-2017 CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 Gene3D G3DSA:3.40.50.720 73 317 1.1E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 225 244 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 263 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 215 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 280 300 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 95 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 164 3.7E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 6.5E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 213 6.5E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 164 6.5E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS21225 c841248b012dd8aa051db74b06f36b8c 317 SUPERFAMILY SSF51735 75 317 8.51E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30470 27b696f46714f19ac5703675ec7b190f 167 Gene3D G3DSA:3.10.129.10 9 155 6.0E-56 T 06-07-2017 IPR029069 HotDog domain CDO28_RS30470 27b696f46714f19ac5703675ec7b190f 167 Pfam PF03061 Thioesterase superfamily 25 97 1.7E-15 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 CDO28_RS30470 27b696f46714f19ac5703675ec7b190f 167 SUPERFAMILY SSF54637 5 156 1.05E-44 T 06-07-2017 IPR029069 HotDog domain CDO28_RS00520 89603f9a4e07a7a6a32297e37c910c99 420 Pfam PF05762 VWA domain containing CoxE-like protein 164 383 2.9E-88 T 06-07-2017 IPR008912 Uncharacterised protein family CoxE-like CDO28_RS00520 89603f9a4e07a7a6a32297e37c910c99 420 SUPERFAMILY SSF53300 222 348 3.25E-14 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS00520 89603f9a4e07a7a6a32297e37c910c99 420 PIRSF PIRSF010256 1 393 2.2E-133 T 06-07-2017 IPR011195 Uncharacterised conserved protein UCP010256 CDO28_RS00520 89603f9a4e07a7a6a32297e37c910c99 420 Gene3D G3DSA:3.40.50.410 222 340 9.5E-7 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 168 184 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 SMART SM00825 Beta-ketoacyl synthase 14 427 2.6E-15 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 SUPERFAMILY SSF53901 229 423 8.65E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 Gene3D G3DSA:3.40.47.10 278 424 6.4E-53 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 Gene3D G3DSA:3.40.47.10 14 270 4.4E-52 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 SUPERFAMILY SSF53901 14 267 6.28E-48 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 14 260 2.4E-31 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS17670 f01ae2831b0eb5ccf44a680f823ef888 427 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 268 382 1.8E-29 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS26170 6ecb93b4d23e446f2d481a15147ed839 298 Gene3D G3DSA:1.10.3720.10 8 284 1.3E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26170 6ecb93b4d23e446f2d481a15147ed839 298 SUPERFAMILY SSF160964 8 57 9.42E-5 T 06-07-2017 CDO28_RS26170 6ecb93b4d23e446f2d481a15147ed839 298 SUPERFAMILY SSF161098 53 280 7.72E-51 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26170 6ecb93b4d23e446f2d481a15147ed839 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 287 7.3E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30700 33a09d4b268860712d00613f0ccc0d22 188 Gene3D G3DSA:3.40.50.1820 3 185 1.6E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30700 33a09d4b268860712d00613f0ccc0d22 188 Pfam PF01738 Dienelactone hydrolase family 3 185 1.1E-18 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 CDO28_RS30700 33a09d4b268860712d00613f0ccc0d22 188 SUPERFAMILY SSF53474 3 185 6.34E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS16115 9f4157620025a0c93a49fbba47096003 312 Gene3D G3DSA:3.20.20.150 5 297 2.5E-17 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS16115 9f4157620025a0c93a49fbba47096003 312 SUPERFAMILY SSF51658 4 305 2.23E-51 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS16115 9f4157620025a0c93a49fbba47096003 312 Pfam PF01261 Xylose isomerase-like TIM barrel 51 229 2.0E-8 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 Pfam PF00462 Glutaredoxin 4 62 2.3E-19 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 SUPERFAMILY SSF52833 1 84 4.68E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 PRINTS PR00160 Glutaredoxin signature 4 22 2.2E-12 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 PRINTS PR00160 Glutaredoxin signature 61 74 2.2E-12 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 PRINTS PR00160 Glutaredoxin signature 47 60 2.2E-12 T 06-07-2017 IPR014025 Glutaredoxin subgroup CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 Gene3D G3DSA:3.40.30.10 2 84 2.2E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS14045 b823e15e5808e202aab9ae0caa2f353f 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 1.7E-35 T 06-07-2017 IPR011900 Glutaredoxin, GrxC GO:0045454 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 SUPERFAMILY SSF52964 36 164 2.75E-43 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Gene3D G3DSA:3.40.50.10070 30 154 7.1E-54 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Gene3D G3DSA:2.130.10.10 155 433 1.5E-79 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 23 432 2.0E-155 T 06-07-2017 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 SUPERFAMILY SSF69304 158 433 1.14E-59 T 06-07-2017 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Pfam PF04052 TolB amino-terminal domain 30 132 7.1E-35 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Pfam PF07676 WD40-like Beta Propeller Repeat 285 320 6.7E-12 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Pfam PF07676 WD40-like Beta Propeller Repeat 372 408 9.1E-7 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Pfam PF07676 WD40-like Beta Propeller Repeat 329 362 2.2E-4 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Pfam PF07676 WD40-like Beta Propeller Repeat 243 276 1.8E-6 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS13425 91fc89c9c3fddd144db6e7e12e2705d6 436 Hamap MF_00671 Protein TolB [tolB]. 9 431 34.031 T 06-07-2017 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 CDO28_RS19090 b208ef9f59334e801ddc8e772c0793f5 238 Gene3D G3DSA:2.60.120.10 13 130 1.1E-9 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS19090 b208ef9f59334e801ddc8e772c0793f5 238 Pfam PF13545 Crp-like helix-turn-helix domain 151 218 7.0E-14 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS19090 b208ef9f59334e801ddc8e772c0793f5 238 SUPERFAMILY SSF51206 12 131 3.54E-13 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS19090 b208ef9f59334e801ddc8e772c0793f5 238 SUPERFAMILY SSF46785 149 220 6.11E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19090 b208ef9f59334e801ddc8e772c0793f5 238 Gene3D G3DSA:1.10.10.10 148 220 1.8E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 Pfam PF00990 Diguanylate cyclase, GGDEF domain 135 289 1.1E-45 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 133 292 1.4E-37 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 Pfam PF00563 EAL domain 310 539 7.4E-72 T 06-07-2017 IPR001633 EAL domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 SMART SM00267 124 294 4.9E-57 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 SUPERFAMILY SSF55073 140 294 2.51E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 Gene3D G3DSA:3.20.20.450 308 552 1.3E-91 T 06-07-2017 IPR001633 EAL domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 SMART SM00052 304 545 1.8E-108 T 06-07-2017 IPR001633 EAL domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 SUPERFAMILY SSF141868 310 553 3.92E-86 T 06-07-2017 IPR001633 EAL domain CDO28_RS32765 05eff30003a10655f28b27e488e8d1c9 564 Gene3D G3DSA:3.30.70.270 136 298 5.7E-52 T 06-07-2017 CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 PIRSF PIRSF036773 1 188 1.0E-73 T 06-07-2017 CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 SUPERFAMILY SSF110836 1 91 6.67E-29 T 06-07-2017 IPR014824 Scaffold protein Nfu/NifU, N-terminal CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 89 4.9E-31 T 06-07-2017 IPR014824 Scaffold protein Nfu/NifU, N-terminal CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 SUPERFAMILY SSF117916 105 188 2.18E-26 T 06-07-2017 CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 SMART SM00932 3 89 4.9E-50 T 06-07-2017 IPR014824 Scaffold protein Nfu/NifU, N-terminal CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 Pfam PF01106 NifU-like domain 120 186 3.0E-27 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 128 188 3.0E-30 T 06-07-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CDO28_RS08535 d932e886d16def2cbeac514ddd68f7bd 188 Gene3D G3DSA:3.30.1370.70 1 91 3.5E-33 T 06-07-2017 IPR014824 Scaffold protein Nfu/NifU, N-terminal CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 Gene3D G3DSA:3.40.50.720 164 284 1.2E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 Pfam PF00107 Zinc-binding dehydrogenase 171 299 1.4E-22 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 Gene3D G3DSA:3.90.180.10 1 163 2.6E-51 T 06-07-2017 IPR011032 GroES-like CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 SUPERFAMILY SSF51735 136 304 2.48E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 SUPERFAMILY SSF50129 1 170 4.72E-51 T 06-07-2017 IPR011032 GroES-like CDO28_RS24460 ffe805c8244457eaaeda5256064f2392 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 130 8.1E-32 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 2.7E-13 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 Gene3D G3DSA:1.10.10.60 8 52 2.1E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 6.4E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 6.4E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 Gene3D G3DSA:1.10.357.10 78 211 1.3E-58 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 Gene3D G3DSA:1.10.10.60 53 77 5.2E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 Pfam PF08362 YcdC-like protein, C-terminal region 71 211 1.8E-58 T 06-07-2017 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 SUPERFAMILY SSF48498 87 211 1.65E-43 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS14945 941c5b155d80a9001c5244d94d5e8897 213 SUPERFAMILY SSF46689 9 91 9.93E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22430 fb67f3112fc5a2caf0e615fac741d6c6 545 Pfam PF13817 IS66 C-terminal element 495 532 1.7E-18 T 06-07-2017 CDO28_RS22430 fb67f3112fc5a2caf0e615fac741d6c6 545 Pfam PF03050 Transposase IS66 family 192 488 3.1E-91 T 06-07-2017 IPR004291 Transposase, IS66 CDO28_RS22430 fb67f3112fc5a2caf0e615fac741d6c6 545 Pfam PF13005 zinc-finger binding domain of transposase IS66 134 177 9.4E-14 T 06-07-2017 IPR024474 Zinc-finger binding domain of transposase IS66 CDO28_RS22430 fb67f3112fc5a2caf0e615fac741d6c6 545 Pfam PF13007 Transposase C of IS166 homeodomain 47 130 1.4E-10 T 06-07-2017 IPR024463 Transposase TnpC, homeodomain CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 Gene3D G3DSA:3.40.190.10 174 263 6.4E-20 T 06-07-2017 CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 4.7E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 SUPERFAMILY SSF46785 4 84 1.87E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 Gene3D G3DSA:1.10.10.10 3 80 1.2E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 SUPERFAMILY SSF53850 90 298 3.1E-46 T 06-07-2017 CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 Pfam PF03466 LysR substrate binding domain 89 294 2.5E-41 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS08400 cb9996b7faf9491e5329682428ba4f56 302 Gene3D G3DSA:3.40.190.10 92 173 7.7E-26 T 06-07-2017 CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 SUPERFAMILY SSF89919 8 120 4.84E-29 T 06-07-2017 IPR023799 Ribosome-binding factor A domain CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 102 5.0E-46 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 11 120 3.4E-15 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 Gene3D G3DSA:3.30.300.20 9 125 1.0E-28 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 Pfam PF02033 Ribosome-binding factor A 12 118 1.0E-24 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 ProSitePatterns PS01319 Ribosome-binding factor A signature. 83 105 - T 06-07-2017 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 CDO28_RS09385 23f8ede9ca5f77e154fe1c8cc32e3493 135 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 8 125 19.815 T 06-07-2017 IPR000238 Ribosome-binding factor A GO:0006364 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 Gene3D G3DSA:3.40.50.1370 4 143 1.3E-47 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 149 1.5E-36 T 06-07-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 266 2.3E-20 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 2.3E-20 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 2.3E-20 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 2.3E-20 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 7 304 1.0E-93 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 302 5.0E-25 T 06-07-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 SUPERFAMILY SSF53671 2 304 3.67E-97 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 261 266 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 43 65 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 136 153 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 81 90 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 PRINTS PR00101 Aspartate carbamoyltransferase signature 220 229 5.2E-29 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 Gene3D G3DSA:3.40.50.1370 144 283 6.7E-51 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS03930 da7a001c9ae0c17e4b303087061d1a4c 313 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 6 306 39.461 T 06-07-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDO28_RS25775 70f094a03c8d48330fb7fa2441eafa0d 265 SMART SM00382 27 216 9.8E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS25775 70f094a03c8d48330fb7fa2441eafa0d 265 Gene3D G3DSA:3.40.50.300 3 237 6.2E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25775 70f094a03c8d48330fb7fa2441eafa0d 265 Pfam PF00005 ABC transporter 18 167 2.0E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25775 70f094a03c8d48330fb7fa2441eafa0d 265 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS25775 70f094a03c8d48330fb7fa2441eafa0d 265 SUPERFAMILY SSF52540 3 228 3.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03210 1d9425bd5812c21dda3f8a518566655e 441 SUPERFAMILY SSF56176 12 178 6.54E-34 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS03210 1d9425bd5812c21dda3f8a518566655e 441 Pfam PF01565 FAD binding domain 35 148 4.9E-19 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS03210 1d9425bd5812c21dda3f8a518566655e 441 Gene3D G3DSA:3.30.465.10 64 177 1.4E-26 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS26500 460460689af888a97efd4fe4433d873c 416 Gene3D G3DSA:3.10.560.10 111 171 1.4E-8 T 06-07-2017 CDO28_RS26500 460460689af888a97efd4fe4433d873c 416 Gene3D G3DSA:3.10.560.10 236 266 1.4E-8 T 06-07-2017 CDO28_RS26500 460460689af888a97efd4fe4433d873c 416 Gene3D G3DSA:3.30.1950.10 48 110 6.5E-7 T 06-07-2017 CDO28_RS26500 460460689af888a97efd4fe4433d873c 416 Pfam PF10531 SLBB domain 120 157 1.1E-7 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS26500 460460689af888a97efd4fe4433d873c 416 Pfam PF02563 Polysaccharide biosynthesis/export protein 39 114 8.9E-11 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 PIRSF PIRSF036615 1 401 3.0E-83 T 06-07-2017 IPR012073 LytTR MHYT transcriptional regulator CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 SMART SM00850 300 398 2.2E-20 T 06-07-2017 IPR007492 LytTR DNA-binding domain GO:0003677 CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 Pfam PF04397 LytTr DNA-binding domain 302 397 4.7E-15 T 06-07-2017 IPR007492 LytTR DNA-binding domain GO:0003677 CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 107 9.6E-9 T 06-07-2017 IPR005330 MHYT domain CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 Pfam PF03707 Bacterial signalling protein N terminal repeat 114 169 2.9E-8 T 06-07-2017 IPR005330 MHYT domain CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 Pfam PF03707 Bacterial signalling protein N terminal repeat 176 224 1.1E-6 T 06-07-2017 IPR005330 MHYT domain CDO28_RS21625 e93e74422566f1b5e8d687a3318e4bf9 404 Gene3D G3DSA:2.40.50.40 293 358 2.7E-10 T 06-07-2017 CDO28_RS28990 d1c7462c4e7dd05b09c2ccbd5b675e11 179 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 9 176 1.3E-47 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS28990 d1c7462c4e7dd05b09c2ccbd5b675e11 179 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 9 175 6.4E-58 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS28990 d1c7462c4e7dd05b09c2ccbd5b675e11 179 SUPERFAMILY SSF51182 7 177 1.34E-63 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS28990 d1c7462c4e7dd05b09c2ccbd5b675e11 179 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 3 173 3.0E-98 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS28990 d1c7462c4e7dd05b09c2ccbd5b675e11 179 Gene3D G3DSA:2.60.120.10 8 176 1.5E-67 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS10210 e191a2b94955c16287ed3819dca54d4d 118 Pfam PF07883 Cupin domain 31 96 1.1E-14 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS10210 e191a2b94955c16287ed3819dca54d4d 118 SUPERFAMILY SSF51182 1 115 5.85E-27 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS10210 e191a2b94955c16287ed3819dca54d4d 118 Gene3D G3DSA:2.60.120.10 1 105 8.4E-36 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 Pfam PF03466 LysR substrate binding domain 92 289 1.9E-31 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 Gene3D G3DSA:3.40.190.10 181 245 6.1E-6 T 06-07-2017 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 SUPERFAMILY SSF46785 5 115 3.2E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.0E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 SUPERFAMILY SSF53850 94 292 3.44E-35 T 06-07-2017 CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 Gene3D G3DSA:1.10.10.10 6 88 3.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19260 927a031b865749bb263dfba9fad714e7 295 Gene3D G3DSA:3.40.190.10 95 180 2.6E-15 T 06-07-2017 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 PRINTS PR01008 Flagellar L-ring protein signature 78 90 3.2E-36 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 PRINTS PR01008 Flagellar L-ring protein signature 197 211 3.2E-36 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 PRINTS PR01008 Flagellar L-ring protein signature 213 227 3.2E-36 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 PRINTS PR01008 Flagellar L-ring protein signature 176 192 3.2E-36 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 PRINTS PR01008 Flagellar L-ring protein signature 150 165 3.2E-36 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 Pfam PF02107 Flagellar L-ring protein 58 235 1.6E-56 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS07305 0129b09efd9579996b132c6e68b0d066 236 Hamap MF_00415 Flagellar L-ring protein [flgH]. 2 234 25.264 T 06-07-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 Pfam PF07690 Major Facilitator Superfamily 25 414 2.4E-44 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 ProSitePatterns PS00216 Sugar transport proteins signature 1. 326 342 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 Gene3D G3DSA:1.20.1250.20 267 422 1.6E-17 T 06-07-2017 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 Gene3D G3DSA:1.20.1250.20 457 487 1.6E-17 T 06-07-2017 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 Gene3D G3DSA:1.20.1250.20 17 196 1.4E-20 T 06-07-2017 CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 SUPERFAMILY SSF103473 10 201 2.62E-51 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 SUPERFAMILY SSF103473 253 424 2.62E-51 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21345 415e0235582b538fcc098ad0567da9b4 490 SUPERFAMILY SSF103473 460 485 2.62E-51 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 7 367 55.266 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 Pfam PF00155 Aminotransferase class I and II 35 363 1.4E-47 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 366 3.9E-87 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 SUPERFAMILY SSF53383 25 366 2.95E-70 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 Gene3D G3DSA:3.90.1150.10 270 366 1.2E-20 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 Gene3D G3DSA:3.40.640.10 62 269 5.2E-55 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS20005 4eec8d99d82849ad06e7f07cb1d18505 370 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 226 235 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 Pfam PF00067 Cytochrome P450 289 387 1.1E-16 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 337 352 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 367 378 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 291 302 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 210 232 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 358 367 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 150 166 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 167 182 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 309 336 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 PRINTS PR00359 B-class P450 signature 104 115 1.5E-37 T 06-07-2017 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 Gene3D G3DSA:1.10.630.10 18 415 1.8E-100 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 SUPERFAMILY SSF48264 23 415 9.95E-78 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS04220 bd38f733c9534968855e10bd2460d2c5 415 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 360 369 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 SUPERFAMILY SSF46785 53 109 1.39E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 Pfam PF07848 PaaX-like protein 26 94 1.3E-30 T 06-07-2017 IPR012906 PaaX-like, N-terminal CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 29 292 5.3E-108 T 06-07-2017 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 Gene3D G3DSA:1.10.10.10 53 104 1.1E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 PIRSF PIRSF020623 9 292 8.7E-64 T 06-07-2017 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 CDO28_RS30505 9777847639d3f3fa70a7dabfb9d8982e 306 Pfam PF08223 PaaX-like protein C-terminal domain 159 262 1.5E-23 T 06-07-2017 IPR013225 PaaX-like, C-terminal CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 Pfam PF07559 Flagellar basal body protein FlaE 179 285 4.0E-13 T 06-07-2017 IPR011491 Flagellar hook protein FlgE CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 328 404 1.9E-17 T 06-07-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 Pfam PF00460 Flagella basal body rod protein 7 37 1.6E-12 T 06-07-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 387 3.1E-92 T 06-07-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 06-07-2017 IPR019776 Flagellar basal body rod protein, conserved site CDO28_RS07240 3603a1548d2799e7f0b81fbaae70cd48 406 SUPERFAMILY SSF117143 82 366 1.07E-63 T 06-07-2017 CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 SUPERFAMILY SSF53850 23 316 4.17E-71 T 06-07-2017 CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 PIRSF PIRSF002825 1 319 1.6E-61 T 06-07-2017 IPR026045 Ferric binding protein CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 Pfam PF13343 Bacterial extracellular solute-binding protein 75 306 8.7E-33 T 06-07-2017 CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 Gene3D G3DSA:3.40.190.10 258 311 2.8E-52 T 06-07-2017 CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 Gene3D G3DSA:3.40.190.10 1 123 2.8E-52 T 06-07-2017 CDO28_RS17025 f88ed1e6e76a0458a4ed6e708f414cd8 326 Gene3D G3DSA:3.40.190.10 126 257 3.3E-36 T 06-07-2017 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 SUPERFAMILY SSF47648 3 71 4.19E-21 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 308 4.2E-44 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Gene3D G3DSA:3.40.1030.10 72 336 1.7E-110 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 112 127 - T 06-07-2017 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 SUPERFAMILY SSF52418 71 331 3.92E-89 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 PIRSF PIRSF000478 2 438 8.2E-154 T 06-07-2017 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 SUPERFAMILY SSF54680 336 436 5.1E-28 T 06-07-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 52.99 T 06-07-2017 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Gene3D G3DSA:1.20.970.10 2 69 4.8E-28 T 06-07-2017 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 SMART SM00941 349 423 4.3E-28 T 06-07-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Gene3D G3DSA:3.90.1170.30 337 432 1.0E-28 T 06-07-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 68 1.8E-20 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 3 436 1.6E-230 T 06-07-2017 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 349 422 1.2E-22 T 06-07-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS09935 700a8eeb58d80c50e9b79567065ad768 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 6 422 3.7E-170 T 06-07-2017 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS00540 5b48cc698e8561707806a60695c230e9 105 Pfam PF04993 TfoX N-terminal domain 8 100 6.1E-31 T 06-07-2017 IPR007076 TfoX, N-terminal CDO28_RS00540 5b48cc698e8561707806a60695c230e9 105 Gene3D G3DSA:3.30.1460.30 3 102 1.3E-36 T 06-07-2017 IPR007076 TfoX, N-terminal CDO28_RS00540 5b48cc698e8561707806a60695c230e9 105 SUPERFAMILY SSF159894 4 101 1.15E-32 T 06-07-2017 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.9E-21 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 29.783 T 06-07-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 SMART SM00649 9 141 4.2E-80 T 06-07-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 Gene3D G3DSA:1.10.10.250 73 140 3.1E-28 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 67 1.2E-29 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 3.0E-17 T 06-07-2017 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 Gene3D G3DSA:3.30.1550.10 2 72 1.1E-37 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 2.9E-64 T 06-07-2017 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 SUPERFAMILY SSF54747 3 72 4.06E-30 T 06-07-2017 IPR020784 Ribosomal protein L11, N-terminal CDO28_RS03690 88929dd0ac003c549fe4c8418a8be98e 142 SUPERFAMILY SSF46906 68 140 2.09E-23 T 06-07-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 Gene3D G3DSA:3.10.105.10 373 590 5.7E-29 T 06-07-2017 CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 Gene3D G3DSA:3.90.76.10 86 211 5.0E-25 T 06-07-2017 CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 Gene3D G3DSA:3.40.190.10 263 372 2.6E-12 T 06-07-2017 CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 503 7.5E-59 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 SUPERFAMILY SSF53850 243 616 9.59E-83 T 06-07-2017 CDO28_RS26575 5328bc320f712d05bb24906dee8076c1 633 SUPERFAMILY SSF53850 79 215 9.59E-83 T 06-07-2017 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 347 366 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 132 8.0E-36 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Gene3D G3DSA:1.20.140.10 230 391 1.7E-40 T 06-07-2017 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Gene3D G3DSA:1.10.540.10 6 134 1.5E-43 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 229 1.8E-21 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Gene3D G3DSA:2.40.110.10 135 229 1.2E-31 T 06-07-2017 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 SUPERFAMILY SSF56645 7 241 2.62E-76 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 SUPERFAMILY SSF47203 245 393 2.74E-41 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 138 150 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS26980 fe1b54c941a06e3c876357253f21d029 395 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 387 1.7E-25 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 Pfam PF00005 ABC transporter 20 159 3.9E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 Gene3D G3DSA:3.40.50.300 1 229 1.1E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 SMART SM00382 26 218 1.3E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 Gene3D G3DSA:2.40.50.140 277 338 3.3E-8 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 SUPERFAMILY SSF52540 1 239 3.14E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11985 815261b277344c37dec7bb513cd1db34 356 SUPERFAMILY SSF50331 235 352 7.23E-16 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 Pfam PF04972 BON domain 25 87 5.4E-11 T 06-07-2017 IPR007055 BON domain CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 SMART SM00257 101 152 8.2E-9 T 06-07-2017 IPR018392 LysM domain CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 Pfam PF01476 LysM domain 102 152 9.4E-10 T 06-07-2017 IPR018392 LysM domain CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 SUPERFAMILY SSF54106 100 152 1.01E-7 T 06-07-2017 IPR018392 LysM domain CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 Gene3D G3DSA:3.10.350.10 100 152 1.3E-10 T 06-07-2017 IPR018392 LysM domain CDO28_RS10400 9cab877d8b8537a81e0f3c7e06e1795a 157 SMART SM00749 25 88 6.2E-6 T 06-07-2017 IPR014004 Transport-associated and nodulation domain, bacteria CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Gene3D G3DSA:3.90.78.10 235 308 7.4E-29 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 SUPERFAMILY SSF56194 208 309 4.97E-37 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 207 306 9.1E-27 T 06-07-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 324 94.795 T 06-07-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Pfam PF01565 FAD binding domain 44 173 1.1E-15 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Gene3D G3DSA:3.30.43.10 22 91 1.8E-18 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 SUPERFAMILY SSF56176 20 199 1.27E-37 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 34 306 4.2E-48 T 06-07-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16405 4e638a8c75df4c4d9836411d5dea5487 324 Gene3D G3DSA:3.30.465.10 102 234 1.9E-34 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 SUPERFAMILY SSF55103 233 467 1.8E-72 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 Pfam PF02913 FAD linked oxidases, C-terminal domain 226 466 4.0E-66 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 Gene3D G3DSA:3.30.43.10 17 108 1.1E-27 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 Gene3D G3DSA:1.10.45.10 428 466 2.1E-13 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 Gene3D G3DSA:3.30.465.10 109 227 1.6E-43 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 SUPERFAMILY SSF56176 22 227 3.46E-65 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS16595 f146c65cf27607e5f27541a4a1b589b6 468 Pfam PF01565 FAD binding domain 53 189 7.7E-37 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 Gene3D G3DSA:3.40.50.720 4 243 9.4E-81 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 183 0.0095 T 06-07-2017 CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.3E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 8.3E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 8.3E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 SUPERFAMILY SSF51735 4 243 2.88E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 243 6.1E-62 T 06-07-2017 CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32965 20246252f79be4ea38ae53388b5aca67 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.0E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 Gene3D G3DSA:3.40.50.2300 72 171 2.9E-9 T 06-07-2017 CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 Gene3D G3DSA:3.40.50.2300 172 311 1.4E-18 T 06-07-2017 CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 SMART SM00354 8 71 5.1E-4 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 Pfam PF13407 Periplasmic binding protein domain 70 296 3.3E-26 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 SUPERFAMILY SSF47413 7 47 3.94E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 SUPERFAMILY SSF53822 72 317 5.5E-26 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 47 4.1E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS00030 4bba8c8f479e8a4b3c350847d355948b 340 Gene3D G3DSA:1.10.260.40 8 46 2.4E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28170 8f632df13ca1c8340e025f3acbcbdae1 348 Pfam PF00535 Glycosyl transferase family 2 14 177 9.2E-37 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS28170 8f632df13ca1c8340e025f3acbcbdae1 348 Gene3D G3DSA:3.90.550.10 10 249 5.7E-42 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28170 8f632df13ca1c8340e025f3acbcbdae1 348 SUPERFAMILY SSF53448 6 228 1.21E-45 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 SUPERFAMILY SSF46785 1 112 1.01E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 Gene3D G3DSA:1.10.10.10 3 84 5.0E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.7E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 Gene3D G3DSA:3.40.190.10 180 267 1.5E-15 T 06-07-2017 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 SUPERFAMILY SSF53850 93 299 7.6E-36 T 06-07-2017 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.7E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 Pfam PF03466 LysR substrate binding domain 89 293 1.2E-34 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23565 01466e80bc31ad34274f2e4521160652 332 Gene3D G3DSA:3.40.190.10 92 179 2.7E-14 T 06-07-2017 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 SUPERFAMILY SSF51905 58 287 3.52E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 SUPERFAMILY SSF51905 382 436 3.52E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 Gene3D G3DSA:3.50.50.60 205 286 1.5E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 Gene3D G3DSA:3.50.50.60 50 150 1.5E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 Gene3D G3DSA:3.50.50.60 382 433 1.5E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27575 74b3460c2974d5b0e5ef1b0b0c05533b 466 Pfam PF01266 FAD dependent oxidoreductase 59 421 1.9E-46 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 PIRSF PIRSF006648 10 250 1.2E-29 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 Pfam PF01061 ABC-2 type transporter 7 216 1.4E-34 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 21 42 6.7E-10 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 6.7E-10 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 6.7E-10 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18660 d73d13a9e2075d459e71c68b80a861d8 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 6.7E-10 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 135 170 1.3E-5 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 316 351 11.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 207 242 16.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 280 315 3.7 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 171 206 1.3E-5 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SMART SM00671 243 279 0.047 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 282 315 0.02 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 171 206 1.5E-5 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 135 170 8.9E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 317 346 0.13 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 243 279 0.0012 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Pfam PF08238 Sel1 repeat 225 241 22.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 Gene3D G3DSA:1.25.40.10 110 352 9.9E-48 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13220 6e52961ab070c91101c76f8caa960c55 381 SUPERFAMILY SSF81901 110 353 9.16E-45 T 06-07-2017 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 Pfam PF00701 Dihydrodipicolinate synthetase family 6 240 4.4E-31 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 SMART SM01130 5 302 3.5E-47 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 4.2E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 4.2E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 4.2E-5 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 SUPERFAMILY SSF51569 3 273 9.52E-53 T 06-07-2017 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 Gene3D G3DSA:3.20.20.70 1 318 1.4E-74 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31870 c6e0ac0c4283f526ef48b652a593d149 320 PIRSF PIRSF001365 1 313 9.1E-70 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS02185 57670ab305d44ffe8004e8c3712c6352 130 Gene3D G3DSA:3.90.1590.10 3 123 3.4E-33 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS02185 57670ab305d44ffe8004e8c3712c6352 130 SUPERFAMILY SSF51316 4 124 3.77E-36 T 06-07-2017 IPR011057 Mss4-like CDO28_RS02185 57670ab305d44ffe8004e8c3712c6352 130 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 102 5.9E-17 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 Gene3D G3DSA:3.40.50.920 213 331 5.2E-45 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 Gene3D G3DSA:3.40.50.970 2 212 3.8E-89 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 SMART SM00861 4 179 1.9E-71 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 Pfam PF02780 Transketolase, C-terminal domain 210 327 4.1E-38 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 SUPERFAMILY SSF52518 1 219 2.06E-73 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 SUPERFAMILY SSF52922 205 335 3.53E-45 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS12435 1841352e60efdc42d48b0bf5aaded936 337 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 1.2E-46 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS31915 7829dd1d5d7a61a6eb81c9275649bb00 333 Pfam PF05544 Proline racemase 8 331 5.2E-144 T 06-07-2017 IPR008794 Proline racemase family CDO28_RS31915 7829dd1d5d7a61a6eb81c9275649bb00 333 Gene3D G3DSA:3.10.310.10 154 320 1.1E-68 T 06-07-2017 CDO28_RS31915 7829dd1d5d7a61a6eb81c9275649bb00 333 SUPERFAMILY SSF54506 2 330 1.68E-117 T 06-07-2017 CDO28_RS31915 7829dd1d5d7a61a6eb81c9275649bb00 333 Gene3D G3DSA:3.10.310.10 2 153 1.6E-63 T 06-07-2017 CDO28_RS31915 7829dd1d5d7a61a6eb81c9275649bb00 333 PIRSF PIRSF029792 1 333 9.6E-134 T 06-07-2017 IPR008794 Proline racemase family CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 Pfam PF00700 Bacterial flagellin C-terminal helical region 309 393 9.9E-22 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 PRINTS PR00207 Flagellin signature 107 130 9.3E-7 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 PRINTS PR00207 Flagellin signature 36 53 9.3E-7 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 136 1.1E-32 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 Gene3D G3DSA:1.20.1330.10 192 211 1.9E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 Gene3D G3DSA:1.20.1330.10 53 136 1.9E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 Gene3D G3DSA:1.20.1330.10 296 345 1.9E-16 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07290 f674f5ca9797e2f13e3074c7a19d9194 394 SUPERFAMILY SSF64518 1 394 2.09E-69 T 06-07-2017 CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 SUPERFAMILY SSF110849 21 116 1.45E-16 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 Pfam PF05063 MT-A70 283 433 1.5E-19 T 06-07-2017 IPR007757 MT-A70-like GO:0006139|GO:0008168 CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 Pfam PF02195 ParB-like nuclease domain 25 113 2.3E-12 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 SMART SM00470 21 114 5.2E-14 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 SUPERFAMILY SSF53335 283 420 2.44E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01855 0f8cb3398138b0576d23b895478642ee 857 Gene3D G3DSA:3.90.1530.10 24 119 4.7E-14 T 06-07-2017 CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 SMART SM00072 8 188 2.4E-4 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 9 186 1.6E-69 T 06-07-2017 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 SUPERFAMILY SSF52540 8 193 5.27E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 Gene3D G3DSA:3.40.50.300 8 31 6.3E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 Gene3D G3DSA:3.40.50.300 81 189 6.3E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 8 185 35.001 T 06-07-2017 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS26925 6eb240c5a2524a03626eb5a5a1aba5ab 195 Pfam PF00625 Guanylate kinase 10 155 7.0E-6 T 06-07-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDO28_RS30120 e4b1c0603406613857e025b505e7984e 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 275 2.2E-28 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 SMART SM00487 270 460 1.1E-29 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 SUPERFAMILY SSF50249 8 184 2.61E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Gene3D G3DSA:2.40.50.140 55 151 1.7E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Pfam PF00271 Helicase conserved C-terminal domain 475 587 1.8E-17 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 SUPERFAMILY SSF52540 452 659 2.15E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 SMART SM00490 505 588 6.1E-19 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 41 664 9.7E-205 T 06-07-2017 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Pfam PF00270 DEAD/DEAH box helicase 276 432 4.3E-16 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 SUPERFAMILY SSF52540 188 453 3.71E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Gene3D G3DSA:3.40.50.300 266 455 2.2E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Gene3D G3DSA:3.40.50.300 456 637 1.5E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01090 8f3d053d6572dd6d83f3eef3dcfa6b4b 701 Pfam PF17191 RecG wedge domain 20 182 1.7E-6 T 06-07-2017 IPR033454 RecG, wedge domain CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 SUPERFAMILY SSF54631 4 130 9.1E-30 T 06-07-2017 CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 SMART SM00116 84 132 2.8E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 SMART SM00116 18 67 9.8E-9 T 06-07-2017 IPR000644 CBS domain CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 Gene3D G3DSA:3.10.580.10 10 130 9.6E-30 T 06-07-2017 CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 Pfam PF00571 CBS domain 79 130 1.9E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS29270 f220e202f1c389b7beb87d04f8bce18e 158 Pfam PF00571 CBS domain 11 64 2.1E-13 T 06-07-2017 IPR000644 CBS domain CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 1.6E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 57 72 1.6E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 1.6E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PIRSF PIRSF005539 1 296 3.0E-105 T 06-07-2017 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 Pfam PF00561 alpha/beta hydrolase fold 33 279 3.7E-24 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 13 290 7.4E-82 T 06-07-2017 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 SUPERFAMILY SSF53474 12 290 3.35E-64 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 Gene3D G3DSA:3.40.50.1820 11 293 2.0E-59 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 60 71 2.6E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 32 40 2.6E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13035 468128c7d58b67127fe2e8740a261008 296 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 103 117 2.6E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS00205 b69203f401ef4d79131bf39df5ef983d 221 Pfam PF06037 Bacterial protein of unknown function (DUF922) 46 205 5.5E-51 T 06-07-2017 IPR010321 Protein of unknown function DUF922 CDO28_RS00205 b69203f401ef4d79131bf39df5ef983d 221 PIRSF PIRSF010521 11 214 1.5E-78 T 06-07-2017 IPR010321 Protein of unknown function DUF922 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 SUPERFAMILY SSF46689 266 314 3.23E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 Pfam PF12833 Helix-turn-helix domain 236 314 4.7E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 Gene3D G3DSA:2.60.120.280 52 95 3.1E-5 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 Pfam PF12852 Cupin 2 195 3.7E-29 T 06-07-2017 IPR032783 AraC-type transcription regulator, ligand-binding domain CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 SUPERFAMILY SSF46689 214 263 1.08E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 Gene3D G3DSA:1.10.10.60 268 315 1.0E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 Gene3D G3DSA:1.10.10.60 210 267 6.3E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 SMART SM00342 230 313 4.4E-29 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 SUPERFAMILY SSF51182 50 106 4.07E-6 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS21880 6b99956fd7c057b85a8114d683ee3abb 320 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 309 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS16170 110fc3514cb13ee0432f644cb64be229 293 SUPERFAMILY SSF161098 14 288 1.03E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16170 110fc3514cb13ee0432f644cb64be229 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 284 3.6E-10 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16170 110fc3514cb13ee0432f644cb64be229 293 Gene3D G3DSA:1.10.3720.10 21 291 1.8E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31405 d1e64c528c510ea05b973a767bbb9ac7 205 Gene3D G3DSA:3.90.190.10 30 175 2.7E-17 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS31405 d1e64c528c510ea05b973a767bbb9ac7 205 Pfam PF00782 Dual specificity phosphatase, catalytic domain 32 173 5.8E-7 T 06-07-2017 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 CDO28_RS31405 d1e64c528c510ea05b973a767bbb9ac7 205 SUPERFAMILY SSF52799 31 175 1.4E-16 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 Gene3D G3DSA:3.40.50.1380 2 123 1.1E-50 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 Pfam PF02142 MGS-like domain 19 111 2.4E-15 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 5 125 29.729 T 06-07-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 ProSitePatterns PS01335 Methylglyoxal synthase active site. 59 67 - T 06-07-2017 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 SMART SM00851 18 112 1.1E-17 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 SUPERFAMILY SSF52335 3 123 1.42E-43 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 PIRSF PIRSF006614 1 126 4.9E-55 T 06-07-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CDO28_RS09800 816f5e9b5bac388b44c73392a780ce95 126 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 5 122 1.6E-45 T 06-07-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 949 1093 4.2E-17 T 06-07-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Gene3D G3DSA:1.25.40.10 148 250 1.4E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 485 586 2.0E-25 T 06-07-2017 IPR021868 Alpha-2-macroglobulin MG1 domain CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SUPERFAMILY SSF48452 148 256 5.87E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF00207 Alpha-2-macroglobulin family 1156 1234 3.7E-8 T 06-07-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Gene3D G3DSA:3.50.4.10 28 94 1.9E-12 T 06-07-2017 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 PIRSF PIRSF038980 41 1815 0.0 T 06-07-2017 IPR026284 Alpha-2-macroglobulin domain protein, bacteria CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SUPERFAMILY SSF57414 40 84 5.89E-7 T 06-07-2017 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SMART SM00223 32 98 0.0028 T 06-07-2017 IPR000177 Apple domain GO:0005515|GO:0005576|GO:0006508 Reactome: R-HSA-140837 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF00024 PAN domain 32 81 1.7E-7 T 06-07-2017 IPR003609 PAN/Apple domain CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF01835 MG2 domain 593 687 8.7E-21 T 06-07-2017 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SMART SM01359 949 1093 9.1E-43 T 06-07-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Gene3D G3DSA:1.50.10.20 1357 1603 3.0E-35 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1362 1382 5.2E-5 T 06-07-2017 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SMART SM01360 1154 1243 1.5E-26 T 06-07-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 CDO28_RS26755 bd5fa2c7a1c35ebae0f8f4938af4d2f7 1815 SUPERFAMILY SSF48239 1355 1603 3.14E-45 T 06-07-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid CDO28_RS19295 684b13ca81b12edf227e312bec5ec31d 358 Pfam PF13407 Periplasmic binding protein domain 65 310 2.2E-46 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS19295 684b13ca81b12edf227e312bec5ec31d 358 SUPERFAMILY SSF53822 54 355 7.85E-60 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS19295 684b13ca81b12edf227e312bec5ec31d 358 Gene3D G3DSA:3.40.50.2300 176 332 1.1E-24 T 06-07-2017 CDO28_RS19295 684b13ca81b12edf227e312bec5ec31d 358 Gene3D G3DSA:3.40.50.2300 53 175 5.8E-25 T 06-07-2017 CDO28_RS33720 b42f9d837037629fa3022329b60cb16b 91 Gene3D G3DSA:1.20.141.10 2 79 2.3E-27 T 06-07-2017 CDO28_RS33720 b42f9d837037629fa3022329b60cb16b 91 Pfam PF05838 Glycosyl hydrolase 108 5 47 4.6E-11 T 06-07-2017 IPR008565 Protein of unknown function DUF847 CDO28_RS33720 b42f9d837037629fa3022329b60cb16b 91 SUPERFAMILY SSF53955 5 81 4.5E-24 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 Gene3D G3DSA:3.50.50.60 3 125 1.5E-115 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 Gene3D G3DSA:3.50.50.60 466 529 1.5E-115 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 Gene3D G3DSA:3.50.50.60 186 312 1.5E-115 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 Pfam PF00732 GMC oxidoreductase 5 293 1.6E-86 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 Pfam PF05199 GMC oxidoreductase 387 523 1.5E-40 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 PIRSF PIRSF000137 2 531 3.0E-143 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 SUPERFAMILY SSF54373 289 473 2.45E-52 T 06-07-2017 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 SUPERFAMILY SSF51905 472 529 7.9E-84 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24450 9c08f3d22621beeec174b958cf66a049 531 SUPERFAMILY SSF51905 4 287 7.9E-84 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 SUPERFAMILY SSF55961 156 401 6.52E-57 T 06-07-2017 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 86 109 - T 06-07-2017 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 Gene3D G3DSA:2.102.10.10 43 144 2.9E-22 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 Gene3D G3DSA:3.90.380.10 145 398 5.2E-22 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 SUPERFAMILY SSF50022 9 154 6.94E-44 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 177 401 6.3E-45 T 06-07-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 Pfam PF00355 Rieske [2Fe-2S] domain 44 124 2.0E-15 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 79 99 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 100 120 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 139 165 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 176 198 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 58 73 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS19405 a9daedb27f15f57922ea514dfc5b738b 412 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 28 53 3.2E-22 T 06-07-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 130 141 3.3E-29 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 265 288 3.3E-29 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 253 262 3.3E-29 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 48 67 3.3E-29 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 SUPERFAMILY SSF53671 2 301 1.57E-103 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 2 301 78.378 T 06-07-2017 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 143 4.8E-49 T 06-07-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 149 298 2.1E-49 T 06-07-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 Gene3D G3DSA:3.40.50.1370 140 287 1.7E-59 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 48 55 - T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 Gene3D G3DSA:3.40.50.1370 2 139 4.7E-55 T 06-07-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 3 300 1.5E-115 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 46 60 8.1E-30 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 79 92 8.1E-30 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 218 228 8.1E-30 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 279 290 8.1E-30 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS07990 944e631f028df87f1becfd33ed24e315 303 PRINTS PR00102 Ornithine carbamoyltransferase signature 119 133 8.1E-30 T 06-07-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 SUPERFAMILY SSF53850 33 544 2.53E-114 T 06-07-2017 CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 Gene3D G3DSA:3.90.76.10 70 158 1.0E-23 T 06-07-2017 CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 Gene3D G3DSA:3.40.190.10 159 312 4.9E-38 T 06-07-2017 CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 Gene3D G3DSA:3.10.105.10 313 516 2.6E-46 T 06-07-2017 CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 457 3.2E-88 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS15145 d758206ad8cee9f437a0e5677f6f5194 546 PIRSF PIRSF002741 1 545 1.7E-83 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 21 257 36.99 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 Gene3D G3DSA:3.40.50.150 30 257 1.0E-57 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 30 257 1.1E-79 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 41 56 - T 06-07-2017 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 SUPERFAMILY SSF53335 26 254 3.56E-44 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 Pfam PF01209 ubiE/COQ5 methyltransferase family 26 257 3.8E-86 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDO28_RS08730 68e1bf9a06df963e63829cb492a6a5e1 258 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 165 179 - T 06-07-2017 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CDO28_RS10860 14c8ea652b66b796e7e8f89a8e946bc6 293 SUPERFAMILY SSF161098 13 293 1.21E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10860 14c8ea652b66b796e7e8f89a8e946bc6 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 285 1.4E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10860 14c8ea652b66b796e7e8f89a8e946bc6 293 Gene3D G3DSA:1.10.3720.10 13 278 1.2E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15470 f61859e0b76bc9bb135234c7e62648b8 125 PIRSF PIRSF009151 2 125 2.2E-64 T 06-07-2017 IPR008497 Protein of unknown function DUF779 CDO28_RS15470 f61859e0b76bc9bb135234c7e62648b8 125 Pfam PF05610 Protein of unknown function (DUF779) 19 112 1.1E-44 T 06-07-2017 IPR008497 Protein of unknown function DUF779 CDO28_RS07330 8ae75d02ae280e8724bccc50b1861de2 111 Pfam PF02049 Flagellar hook-basal body complex protein FliE 34 111 1.7E-18 T 06-07-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CDO28_RS07330 8ae75d02ae280e8724bccc50b1861de2 111 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 111 15.523 T 06-07-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 SMART SM01092 180 282 6.6E-27 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 Gene3D G3DSA:3.30.465.10 58 173 6.2E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 180 279 1.4E-25 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 SUPERFAMILY SSF56176 1 173 2.07E-51 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 Gene3D G3DSA:3.30.390.50 179 286 5.2E-32 T 06-07-2017 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 173 3.9E-50 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 Gene3D G3DSA:3.30.43.10 1 52 2.4E-17 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS31255 19f617cef3e74dbf291d9da4d35aad05 287 SUPERFAMILY SSF55447 180 285 3.14E-28 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 SMART SM00100 16 134 2.7E-17 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 PRINTS PR00103 cAMP-dependent protein kinase signature 82 91 4.8E-5 T 06-07-2017 CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 PRINTS PR00103 cAMP-dependent protein kinase signature 94 105 4.8E-5 T 06-07-2017 CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 PRINTS PR00103 cAMP-dependent protein kinase signature 37 51 4.8E-5 T 06-07-2017 CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 Pfam PF13545 Crp-like helix-turn-helix domain 154 226 1.0E-11 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 Gene3D G3DSA:1.10.10.10 151 230 3.6E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 SUPERFAMILY SSF51206 12 147 6.15E-34 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 Pfam PF00027 Cyclic nucleotide-binding domain 35 121 6.2E-24 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 Gene3D G3DSA:2.60.120.10 10 147 1.5E-31 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 SUPERFAMILY SSF46785 154 229 3.44E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08150 108136825d51ac43475f5ebe44a5b043 234 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 84 101 - T 06-07-2017 IPR018488 Cyclic nucleotide-binding, conserved site CDO28_RS18390 98a9090f12c904aaf38d98ec52e5e450 670 SUPERFAMILY SSF52540 107 546 1.22E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18390 98a9090f12c904aaf38d98ec52e5e450 670 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 111 554 1.4E-100 T 06-07-2017 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 CDO28_RS18390 98a9090f12c904aaf38d98ec52e5e450 670 Gene3D G3DSA:3.40.50.300 348 546 6.7E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18390 98a9090f12c904aaf38d98ec52e5e450 670 Gene3D G3DSA:3.40.50.300 105 209 6.7E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 266 327 5.3E-5 T 06-07-2017 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 SMART SM00320 155 191 35.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 SMART SM00320 198 236 33.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 SMART SM00320 287 326 6.9 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 SMART SM00320 35 73 130.0 T 06-07-2017 IPR001680 WD40 repeat GO:0005515 CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 Gene3D G3DSA:2.130.10.10 124 327 9.2E-23 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 Gene3D G3DSA:2.120.10.30 11 107 1.4E-7 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS12755 9871f3765f045ed6a447088cc12b5751 329 SUPERFAMILY SSF50998 10 328 9.94E-31 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 SUPERFAMILY SSF56003 132 778 4.32E-206 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 SMART SM01008 20 140 2.2E-58 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 295 371 4.6E-49 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 129 184 4.6E-49 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 140 3.1E-30 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 185 293 6.8E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 464 632 2.1E-51 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 633 778 1.6E-68 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.30.365.10 374 463 1.6E-68 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Gene3D G3DSA:3.90.1170.50 4 128 3.3E-42 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 718 5.1E-179 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS12105 438c901952720dc9193fb7e230ded357 781 SUPERFAMILY SSF54665 5 162 2.09E-48 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 Gene3D G3DSA:3.40.50.1980 179 300 1.5E-39 T 06-07-2017 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 Gene3D G3DSA:3.40.50.1980 25 178 1.0E-49 T 06-07-2017 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 297 1.3E-73 T 06-07-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 SUPERFAMILY SSF53807 28 300 5.4E-91 T 06-07-2017 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 235 252 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 186 203 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 212 230 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 75 94 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 257 275 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 31 52 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00691 Adhesin B signature 56 74 4.1E-35 T 06-07-2017 IPR006129 Adhesin B GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 62 75 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 186 207 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 239 257 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 265 284 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 31 49 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS11935 ad636b396aa14d2230f698e063198454 301 PRINTS PR00690 Adhesin family signature 75 92 6.6E-42 T 06-07-2017 IPR006128 Adhesion lipoprotein GO:0007155 CDO28_RS27315 c1ce5244968c94a577ac8a5a6e4fc3f4 282 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 23 166 2.5E-6 T 06-07-2017 IPR008775 Phytanoyl-CoA dioxygenase CDO28_RS27315 c1ce5244968c94a577ac8a5a6e4fc3f4 282 Gene3D G3DSA:2.60.120.620 9 217 6.4E-17 T 06-07-2017 CDO28_RS27315 c1ce5244968c94a577ac8a5a6e4fc3f4 282 SUPERFAMILY SSF51197 19 239 3.3E-28 T 06-07-2017 CDO28_RS26410 9328c8aa895347cd4bc431729fd1d901 246 SUPERFAMILY SSF89550 27 236 6.54E-30 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDO28_RS26410 9328c8aa895347cd4bc431729fd1d901 246 Gene3D G3DSA:3.20.20.140 26 241 2.5E-33 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 531 717 2.1E-40 T 06-07-2017 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 Pfam PF00117 Glutamine amidotransferase class-I 533 707 8.4E-44 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 SUPERFAMILY SSF56322 20 507 1.24E-123 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 SUPERFAMILY SSF52317 528 721 1.36E-47 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 Pfam PF00425 chorismate binding enzyme 247 499 1.3E-65 T 06-07-2017 IPR015890 Chorismate-utilising enzyme, C-terminal CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 602 613 6.0E-11 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 693 706 6.0E-11 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 575 584 6.0E-11 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 Pfam PF04715 Anthranilate synthase component I, N terminal region 46 206 1.1E-8 T 06-07-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PIRSF PIRSF036934 1 729 0.0 T 06-07-2017 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 Gene3D G3DSA:3.40.50.880 530 717 1.8E-49 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 572 586 2.1E-6 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 602 618 2.1E-6 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 TIGRFAM TIGR01815 TrpE-clade3: anthranilate synthase 13 729 0.0 T 06-07-2017 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 693 706 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 627 635 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 531 545 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 602 613 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 648 660 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 PRINTS PR00097 Anthranilate synthase component II signature 575 584 3.6E-23 T 06-07-2017 CDO28_RS15275 ad2e9f9fa7821f37203f00c686229b86 729 Gene3D G3DSA:3.60.120.10 19 511 1.3E-119 T 06-07-2017 IPR005801 ADC synthase GO:0009058 CDO28_RS16945 00f76e1622b3fe8e21c679b509b6d23b 421 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 322 1.4E-17 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS16945 00f76e1622b3fe8e21c679b509b6d23b 421 Gene3D G3DSA:2.40.50.100 91 122 9.4E-15 T 06-07-2017 CDO28_RS16945 00f76e1622b3fe8e21c679b509b6d23b 421 Gene3D G3DSA:2.40.50.100 211 243 9.4E-15 T 06-07-2017 CDO28_RS16945 00f76e1622b3fe8e21c679b509b6d23b 421 SUPERFAMILY SSF111369 78 317 2.88E-27 T 06-07-2017 CDO28_RS16945 00f76e1622b3fe8e21c679b509b6d23b 421 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 65 399 1.2E-54 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS16770 a3f50aaf997b89c5838fc28474a0383d 128 Pfam PF02211 Nitrile hydratase beta subunit 26 115 7.8E-8 T 06-07-2017 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16770 a3f50aaf997b89c5838fc28474a0383d 128 Gene3D G3DSA:1.10.472.20 20 112 4.0E-21 T 06-07-2017 CDO28_RS16770 a3f50aaf997b89c5838fc28474a0383d 128 SUPERFAMILY SSF50090 22 126 7.46E-25 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain CDO28_RS16770 a3f50aaf997b89c5838fc28474a0383d 128 TIGRFAM TIGR03889 nitrile_acc: nitrile hydratase accessory protein 31 99 1.2E-29 T 06-07-2017 IPR023808 Nitrile hydratase accessory protein, putative CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 SUPERFAMILY SSF53067 86 386 2.85E-31 T 06-07-2017 CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 Gene3D G3DSA:3.30.420.40 82 224 5.8E-28 T 06-07-2017 CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 Gene3D G3DSA:1.10.10.10 7 81 3.9E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 56 1.0E-7 T 06-07-2017 CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 SUPERFAMILY SSF46785 8 77 7.42E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 Gene3D G3DSA:3.30.420.40 225 360 4.4E-18 T 06-07-2017 CDO28_RS11740 750ed3723720d1c2a8de337224e9de8b 401 Pfam PF00480 ROK family 90 383 1.0E-23 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 SUPERFAMILY SSF47616 79 213 1.17E-31 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 Pfam PF13410 Glutathione S-transferase, C-terminal domain 123 190 2.7E-10 T 06-07-2017 CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 Gene3D G3DSA:1.20.1050.10 98 216 2.3E-23 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 SUPERFAMILY SSF52833 4 105 6.3E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 84 4.9E-23 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS09045 c92cf63f9d47d6192d2a58c166b4e5c6 228 Gene3D G3DSA:3.40.30.10 3 97 2.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS02040 434d3d081ae2b3c822df693520dcdccb 386 TIGRFAM TIGR03187 DGQHR: DGQHR domain 14 317 2.1E-57 T 06-07-2017 IPR017601 DGQHR-containing domain CDO28_RS02040 434d3d081ae2b3c822df693520dcdccb 386 Pfam PF14072 DNA-sulfur modification-associated 12 181 1.9E-14 T 06-07-2017 IPR017642 DNA sulphur modification protein DndB CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 5 213 38.4 T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Gene3D G3DSA:3.30.1870.10 288 365 1.5E-30 T 06-07-2017 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 5 211 7.6E-63 T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 SUPERFAMILY SSF53335 1 211 3.54E-49 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 133 148 - T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Gene3D G3DSA:3.40.50.150 12 216 2.9E-61 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 SUPERFAMILY SSF159501 230 641 8.63E-144 T 06-07-2017 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Pfam PF05139 Erythromycin esterase 286 635 8.1E-123 T 06-07-2017 IPR007815 Erythromycin esterase GO:0046677 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 210 1.1E-58 T 06-07-2017 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Gene3D G3DSA:3.40.1660.10 229 287 2.7E-74 T 06-07-2017 CDO28_RS31040 693e6b399f4a14547fcc301b4939559e 658 Gene3D G3DSA:3.40.1660.10 497 641 2.7E-74 T 06-07-2017 CDO28_RS18460 77e9798f92993c745d8d53197dc4419a 256 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 15 254 1.4E-53 T 06-07-2017 IPR014147 Type IV conjugative transfer protein TrbJ CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 SMART SM00928 426 471 1.7E-17 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 428 509 3.3E-30 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 SUPERFAMILY SSF140490 423 509 2.62E-28 T 06-07-2017 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 SUPERFAMILY SSF52833 3 87 1.45E-8 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 264 279 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 145 316 8.1E-46 T 06-07-2017 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 439 450 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 SUPERFAMILY SSF142984 341 421 7.32E-19 T 06-07-2017 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 SUPERFAMILY SSF142019 97 337 7.98E-86 T 06-07-2017 CDO28_RS12015 aa242fe770b4d05dc673de3f923751c4 518 Gene3D G3DSA:3.40.30.10 9 83 2.2E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS20110 a72883aac9a86d58a68dcbb15074a989 394 SUPERFAMILY SSF48371 64 138 2.7E-6 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 CDO28_RS20110 a72883aac9a86d58a68dcbb15074a989 394 Pfam PF13646 HEAT repeats 65 138 1.8E-6 T 06-07-2017 CDO28_RS20110 a72883aac9a86d58a68dcbb15074a989 394 Gene3D G3DSA:1.25.10.10 64 139 1.7E-7 T 06-07-2017 IPR011989 Armadillo-like helical CDO28_RS29840 e7a2ae4a45e23a750f0d69141ba2bb31 185 SUPERFAMILY SSF50486 7 183 4.71E-56 T 06-07-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 CDO28_RS29840 e7a2ae4a45e23a750f0d69141ba2bb31 185 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 8 182 30.772 T 06-07-2017 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS29840 e7a2ae4a45e23a750f0d69141ba2bb31 185 Gene3D G3DSA:3.10.300.10 8 184 7.0E-58 T 06-07-2017 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS29840 e7a2ae4a45e23a750f0d69141ba2bb31 185 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 9 178 3.0E-56 T 06-07-2017 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS29840 e7a2ae4a45e23a750f0d69141ba2bb31 185 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 8 182 8.6E-46 T 06-07-2017 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 SMART SM00346 22 111 1.3E-24 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 Gene3D G3DSA:1.10.10.10 17 90 1.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 Pfam PF01614 Bacterial transcriptional regulator 139 263 8.1E-31 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 Pfam PF09339 IclR helix-turn-helix domain 25 73 1.8E-14 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 Gene3D G3DSA:3.30.450.40 91 270 6.1E-55 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 SUPERFAMILY SSF46785 22 94 3.13E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29705 da7d549ea2a9d15eba3f1c85c7efcfed 273 SUPERFAMILY SSF55781 86 267 4.58E-49 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS14460 39d7b38b32bfbe8add53312aa72fc4b3 206 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 173 1.2E-20 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 SMART SM01230 115 371 1.8E-103 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 Gene3D G3DSA:3.10.20.70 6 112 6.4E-8 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 SUPERFAMILY SSF54368 5 109 3.01E-18 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 SUPERFAMILY SSF55931 115 452 2.75E-106 T 06-07-2017 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 Pfam PF00120 Glutamine synthetase, catalytic domain 116 448 5.0E-109 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS16195 87609cbec382afcaaf32e9a46f79bf2c 454 Gene3D G3DSA:3.30.590.10 118 440 3.7E-97 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS17995 d2d7307966022568c08958157062ec75 221 Gene3D G3DSA:3.40.30.10 115 210 1.2E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17995 d2d7307966022568c08958157062ec75 221 Pfam PF00085 Thioredoxin 123 210 6.4E-21 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 CDO28_RS17995 d2d7307966022568c08958157062ec75 221 Pfam PF00085 Thioredoxin 4 104 2.3E-23 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 CDO28_RS17995 d2d7307966022568c08958157062ec75 221 SUPERFAMILY SSF52833 3 107 4.46E-29 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17995 d2d7307966022568c08958157062ec75 221 SUPERFAMILY SSF52833 118 218 9.05E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17995 d2d7307966022568c08958157062ec75 221 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS17995 d2d7307966022568c08958157062ec75 221 Gene3D G3DSA:3.40.30.10 3 107 8.8E-28 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32915 647a6ee2616beceb902e39667ddc041d 330 SUPERFAMILY SSF53822 27 299 1.95E-64 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32915 647a6ee2616beceb902e39667ddc041d 330 Pfam PF13407 Periplasmic binding protein domain 30 287 4.2E-55 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS32915 647a6ee2616beceb902e39667ddc041d 330 Gene3D G3DSA:3.40.50.2300 148 290 2.9E-28 T 06-07-2017 CDO28_RS32915 647a6ee2616beceb902e39667ddc041d 330 Gene3D G3DSA:3.40.50.2300 27 147 2.5E-29 T 06-07-2017 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 Pfam PF03466 LysR substrate binding domain 97 284 3.9E-29 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 SUPERFAMILY SSF46785 5 115 4.57E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 Gene3D G3DSA:3.40.190.10 96 192 1.1E-12 T 06-07-2017 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 Gene3D G3DSA:3.40.190.10 193 242 7.4E-10 T 06-07-2017 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 68 2.4E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.0E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 Gene3D G3DSA:1.10.10.10 5 90 5.8E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19245 ba91cab17beef9c841a3dac554cda9c5 290 SUPERFAMILY SSF53850 97 286 8.38E-28 T 06-07-2017 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 134 185 2.5E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 293 319 2.5E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 SUPERFAMILY SSF54665 6 144 9.81E-31 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 144 8.0E-15 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 609 755 2.6E-59 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 366 452 2.6E-59 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 173 695 2.4E-130 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 SUPERFAMILY SSF56003 160 755 1.44E-174 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 SMART SM01008 30 146 1.1E-24 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.90.1170.50 4 133 3.2E-29 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 186 289 1.0E-40 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27310 253ccc628881cc6ce11210fa4538df85 760 Gene3D G3DSA:3.30.365.10 453 591 4.5E-32 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18700 c35149ff93c7031bf833f24ff1f8b3f7 209 SMART SM00986 38 201 1.7E-28 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS18700 c35149ff93c7031bf833f24ff1f8b3f7 209 SMART SM00987 38 201 1.7E-28 T 06-07-2017 CDO28_RS18700 c35149ff93c7031bf833f24ff1f8b3f7 209 Pfam PF03167 Uracil DNA glycosylase superfamily 42 197 1.6E-22 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS18700 c35149ff93c7031bf833f24ff1f8b3f7 209 Gene3D G3DSA:3.40.470.10 5 206 7.6E-45 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS18700 c35149ff93c7031bf833f24ff1f8b3f7 209 SUPERFAMILY SSF52141 6 205 4.25E-53 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS18155 2337f7f1b0b3126371281e040fa448e5 128 Gene3D G3DSA:1.10.10.60 33 94 7.2E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS18155 2337f7f1b0b3126371281e040fa448e5 128 SUPERFAMILY SSF48295 8 78 9.42E-11 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS18155 2337f7f1b0b3126371281e040fa448e5 128 Pfam PF01527 Transposase 29 95 3.9E-17 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS20215 2337f7f1b0b3126371281e040fa448e5 128 Gene3D G3DSA:1.10.10.60 33 94 7.2E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20215 2337f7f1b0b3126371281e040fa448e5 128 SUPERFAMILY SSF48295 8 78 9.42E-11 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS20215 2337f7f1b0b3126371281e040fa448e5 128 Pfam PF01527 Transposase 29 95 3.9E-17 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS06355 8abe047e78dcb73c1a90b0e38907538c 338 Pfam PF00348 Polyprenyl synthetase 45 287 3.5E-68 T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS06355 8abe047e78dcb73c1a90b0e38907538c 338 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 217 229 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS06355 8abe047e78dcb73c1a90b0e38907538c 338 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 95 109 - T 06-07-2017 IPR000092 Polyprenyl synthetase GO:0008299 CDO28_RS06355 8abe047e78dcb73c1a90b0e38907538c 338 Gene3D G3DSA:1.10.600.10 23 336 2.0E-96 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS06355 8abe047e78dcb73c1a90b0e38907538c 338 SUPERFAMILY SSF48576 17 337 1.54E-95 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 158 184 8.8E-23 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 19 41 8.8E-23 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 200 212 8.8E-23 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 8.8E-23 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 SUPERFAMILY SSF56655 5 261 8.9E-82 T 06-07-2017 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 Gene3D G3DSA:3.40.190.80 153 261 6.5E-35 T 06-07-2017 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 Gene3D G3DSA:3.30.540.10 5 152 1.4E-50 T 06-07-2017 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.3E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS13225 6f168b3b82486f001de328b8ff06a2ca 266 Pfam PF00459 Inositol monophosphatase family 5 259 3.5E-60 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS01470 a2a7d0a4eeef76398fe058ce2da1a9ae 381 PIRSF PIRSF029215 1 380 2.0E-97 T 06-07-2017 IPR016913 Uncharacterised conserved protein UCP029215 CDO28_RS01470 a2a7d0a4eeef76398fe058ce2da1a9ae 381 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 14 174 6.4E-55 T 06-07-2017 IPR016913 Uncharacterised conserved protein UCP029215 CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 Gene3D G3DSA:3.40.50.300 249 476 1.2E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 Gene3D G3DSA:3.40.50.300 4 225 2.2E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 SMART SM00382 29 215 1.3E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 SUPERFAMILY SSF52540 251 476 7.99E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 SUPERFAMILY SSF52540 4 222 3.45E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 Pfam PF00005 ABC transporter 270 426 2.0E-10 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24695 cbacf8f062170f001d7af52b91c9b731 511 Pfam PF00005 ABC transporter 21 165 2.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29650 01aeab737990ef07a3a53df42c29da5b 322 Pfam PF13407 Periplasmic binding protein domain 37 296 2.7E-50 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS29650 01aeab737990ef07a3a53df42c29da5b 322 Gene3D G3DSA:3.40.50.2300 31 154 1.1E-30 T 06-07-2017 CDO28_RS29650 01aeab737990ef07a3a53df42c29da5b 322 SUPERFAMILY SSF53822 33 317 8.58E-71 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29650 01aeab737990ef07a3a53df42c29da5b 322 Gene3D G3DSA:3.40.50.2300 155 316 1.8E-41 T 06-07-2017 CDO28_RS16185 2f44d70055e27eb091f3419bc90ac80a 257 Gene3D G3DSA:3.40.630.40 13 253 1.6E-73 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS16185 2f44d70055e27eb091f3419bc90ac80a 257 Pfam PF05013 N-formylglutamate amidohydrolase 24 230 5.0E-42 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS16185 2f44d70055e27eb091f3419bc90ac80a 257 SUPERFAMILY SSF53187 8 254 2.92E-72 T 06-07-2017 CDO28_RS16185 2f44d70055e27eb091f3419bc90ac80a 257 PIRSF PIRSF029730 2 257 4.5E-102 T 06-07-2017 IPR011227 Uncharacterised conserved protein UCP029730 CDO28_RS15400 ce189f619f88bd6526c7f826e003be22 207 PIRSF PIRSF029557 1 206 1.7E-108 T 06-07-2017 IPR010707 Protein of unknown function DUF1285 CDO28_RS15400 ce189f619f88bd6526c7f826e003be22 207 Pfam PF06938 Protein of unknown function (DUF1285) 49 194 1.2E-56 T 06-07-2017 IPR010707 Protein of unknown function DUF1285 CDO28_RS15400 ce189f619f88bd6526c7f826e003be22 207 Gene3D G3DSA:3.10.540.10 20 100 3.8E-36 T 06-07-2017 CDO28_RS15400 ce189f619f88bd6526c7f826e003be22 207 Gene3D G3DSA:2.30.270.10 101 169 2.2E-31 T 06-07-2017 IPR023361 Protein of unknown function DUF1285, beta-roll domain CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 Gene3D G3DSA:3.30.70.100 22 104 2.3E-26 T 06-07-2017 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 PRINTS PR00112 Acylphosphatase signature 40 65 6.8E-10 T 06-07-2017 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 PRINTS PR00112 Acylphosphatase signature 19 34 6.8E-10 T 06-07-2017 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 Pfam PF00708 Acylphosphatase 21 104 2.2E-23 T 06-07-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 ProSitePatterns PS00150 Acylphosphatase signature 1. 24 34 - T 06-07-2017 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 ProSitePatterns PS00151 Acylphosphatase signature 2. 48 64 - T 06-07-2017 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS30235 0500570dc3d257e43eda85a95b6d804e 106 SUPERFAMILY SSF54975 15 105 1.29E-24 T 06-07-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 PIRSF PIRSF039088 1 509 5.4E-282 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Gene3D G3DSA:2.40.30.20 1 92 2.9E-42 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 SUPERFAMILY SSF47917 380 508 1.12E-48 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Gene3D G3DSA:1.20.150.20 380 508 3.0E-58 T 06-07-2017 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 372 1.1E-72 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 SUPERFAMILY SSF50615 10 94 5.23E-31 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 1.3E-19 T 06-07-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 379 504 2.3E-49 T 06-07-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 SUPERFAMILY SSF52540 96 378 2.79E-100 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 509 3.7E-250 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 509 51.769 T 06-07-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 Gene3D G3DSA:3.40.50.300 94 379 2.3E-121 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11885 7c2e6fdf628fcc141b74fe9ce9ccc119 509 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 06-07-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 ProSitePatterns PS00622 LuxR-type HTH domain signature. 221 248 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 SMART SM00421 204 261 1.3E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 SUPERFAMILY SSF46894 201 263 2.48E-17 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 221 237 2.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 221 2.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 237 249 2.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 Pfam PF00196 Bacterial regulatory proteins, luxR family 206 259 2.1E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS16045 6a69fde07529427f3a11320d21a8acf9 267 Gene3D G3DSA:1.10.10.10 206 264 3.0E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 Gene3D G3DSA:3.10.580.10 201 326 9.8E-30 T 06-07-2017 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 Pfam PF01380 SIS domain 51 180 4.9E-28 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 SUPERFAMILY SSF53697 33 329 3.78E-59 T 06-07-2017 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 53 319 6.8E-82 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 Pfam PF00571 CBS domain 273 326 1.2E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 Pfam PF00571 CBS domain 221 264 2.1E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 PIRSF PIRSF004692 2 329 3.9E-118 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 Gene3D G3DSA:3.40.50.10490 18 199 6.6E-45 T 06-07-2017 CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 SMART SM00116 280 328 11.0 T 06-07-2017 IPR000644 CBS domain CDO28_RS33360 eaedfd8124234af0c0395d74b7ec6fcb 329 SMART SM00116 217 265 1.5 T 06-07-2017 IPR000644 CBS domain CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 348 370 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 206 225 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 409 429 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 87 109 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 302 320 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 PRINTS PR00175 Sodium/alanine symporter signature 178 196 3.5E-58 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 440 6.4E-146 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS22845 164fcea20ece294986c0dad57352918d 472 Pfam PF01235 Sodium:alanine symporter family 51 452 4.3E-152 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS20210 877fb52d82c27e7da7559eb23460da86 114 Pfam PF05717 IS66 Orf2 like protein 7 103 3.1E-34 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 399 622 2.2E-44 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 SMART SM00939 388 623 4.9E-64 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 SUPERFAMILY SSF53474 312 422 1.17E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 SUPERFAMILY SSF53474 44 203 1.17E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 58 178 5.3E-23 T 06-07-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 Gene3D G3DSA:3.40.50.1820 30 183 1.8E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 Gene3D G3DSA:3.40.50.1820 306 419 1.8E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 Gene3D G3DSA:2.60.120.260 421 627 3.8E-66 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 SUPERFAMILY SSF49785 414 627 2.06E-55 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 308 627 2.7E-60 T 06-07-2017 IPR005674 CocE/Serine esterase GO:0016787 CDO28_RS22415 d4b3ff9d516038bf5747c8d207785651 628 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 54 173 4.2E-28 T 06-07-2017 IPR005674 CocE/Serine esterase GO:0016787 CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 SUPERFAMILY SSF51735 3 147 8.73E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 Gene3D G3DSA:3.30.360.10 133 329 1.4E-57 T 06-07-2017 CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 SUPERFAMILY SSF55347 125 290 1.96E-37 T 06-07-2017 CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 1.4E-22 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 Gene3D G3DSA:3.40.50.720 2 132 3.6E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 235 7.7E-11 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS28750 1c73c5266c8050ca18625607d8146759 330 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 3 327 9.2E-127 T 06-07-2017 IPR030827 Inositol 2-dehydrogenase CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 1789 1855 1.2E-5 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 162 178 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 373 1.6E-34 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.50.720 2111 2322 5.3E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF53901 3 368 8.26E-81 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF53901 400 420 8.26E-81 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.47.10 3 261 8.6E-86 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF08659 KR domain 2111 2288 4.6E-53 T 06-07-2017 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00823 Phosphopantetheine attachment site 2396 2467 1.0E-5 T 06-07-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.50.720 1910 2003 9.2E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.366.10 716 825 2.1E-62 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.366.10 519 647 2.1E-62 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF14765 Polyketide synthase dehydratase 901 1165 1.5E-52 T 06-07-2017 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF00550 Phosphopantetheine attachment site 2399 2461 2.5E-7 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF50129 1775 1906 3.8E-28 T 06-07-2017 IPR011032 GroES-like CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2111 2290 7.0E-44 T 06-07-2017 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 528 826 5.1E-79 T 06-07-2017 IPR020801 Polyketide synthase, acyl transferase domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.90.180.10 1765 1909 3.5E-43 T 06-07-2017 IPR011032 GroES-like CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF00698 Acyl transferase domain 527 831 2.2E-64 T 06-07-2017 IPR014043 Acyl transferase CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF47336 2391 2470 3.27E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 1905 1926 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:1.10.1200.10 2383 2471 2.4E-13 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 375 486 5.8E-16 T 06-07-2017 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF52151 524 653 1.12E-55 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF52151 718 814 1.12E-55 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF55048 651 716 2.09E-8 T 06-07-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF51735 2105 2304 1.48E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.30.70.250 650 708 4.0E-5 T 06-07-2017 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 248 2.3E-74 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00826 892 1050 1.2E-15 T 06-07-2017 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF51735 1578 1722 7.64E-5 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00829 1772 2087 3.4E-158 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SMART SM00825 Beta-ketoacyl synthase 3 425 4.0E-159 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 SUPERFAMILY SSF51735 1877 2032 1.7E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Gene3D G3DSA:3.40.47.10 263 424 2.3E-51 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 Pfam PF00107 Zinc-binding dehydrogenase 1916 2007 7.7E-23 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS07690 081aa3905b4968e4bebb10ddfb73464b 2504 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2422 2437 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 5 509 4.6E-271 T 06-07-2017 IPR017785 Choline-sulfatase CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 Gene3D G3DSA:3.40.720.10 4 372 1.4E-89 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 Gene3D G3DSA:3.30.1120.10 389 428 1.7E-10 T 06-07-2017 CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 ProSitePatterns PS00523 Sulfatases signature 1. 52 64 - T 06-07-2017 IPR024607 Sulfatase, conserved site CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 Pfam PF00884 Sulfatase 6 352 3.8E-47 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 SUPERFAMILY SSF53649 5 215 1.31E-108 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 SUPERFAMILY SSF53649 259 486 1.31E-108 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 ProSitePatterns PS00149 Sulfatases signature 2. 94 104 - T 06-07-2017 IPR024607 Sulfatase, conserved site CDO28_RS05800 309ee8c285804d5968ae85b0dbffa121 512 Pfam PF12411 Choline sulfatase enzyme C terminal 457 508 6.9E-23 T 06-07-2017 IPR025863 Choline sulfatase enzyme C-terminal domain CDO28_RS27675 bf8651992919db19847c8d404342b2f5 2175 SUPERFAMILY SSF103515 1872 2175 1.09E-43 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS27675 bf8651992919db19847c8d404342b2f5 2175 SMART SM00869 1899 2165 8.0E-26 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS19065 eb4ceacf0d609a35bf6407d61daa0b35 412 Pfam PF07690 Major Facilitator Superfamily 22 345 3.0E-32 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS19065 eb4ceacf0d609a35bf6407d61daa0b35 412 SUPERFAMILY SSF103473 8 393 2.22E-48 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS19065 eb4ceacf0d609a35bf6407d61daa0b35 412 Gene3D G3DSA:1.20.1250.20 42 193 1.9E-18 T 06-07-2017 CDO28_RS19065 eb4ceacf0d609a35bf6407d61daa0b35 412 Gene3D G3DSA:1.20.1250.20 211 397 1.0E-13 T 06-07-2017 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 3 207 1.0E-50 T 06-07-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 165 186 - T 06-07-2017 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 Gene3D G3DSA:3.40.190.10 3 134 2.1E-28 T 06-07-2017 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 SUPERFAMILY SSF53850 2 226 9.59E-51 T 06-07-2017 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 Gene3D G3DSA:3.40.190.10 135 196 1.7E-20 T 06-07-2017 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 2 228 41.4 T 06-07-2017 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 CDO28_RS06650 ea2c366d0f0c490e5f6ebe5cee923f0f 231 Pfam PF01634 ATP phosphoribosyltransferase 54 227 1.6E-39 T 06-07-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 SUPERFAMILY SSF53850 1 256 1.99E-58 T 06-07-2017 CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 255 3.4E-50 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 Gene3D G3DSA:3.40.190.10 31 110 2.3E-30 T 06-07-2017 CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 Gene3D G3DSA:3.40.190.10 216 257 2.3E-30 T 06-07-2017 CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 Gene3D G3DSA:3.40.190.10 111 214 1.9E-21 T 06-07-2017 CDO28_RS31890 24050e2f8eb26f82d6560243baa6633d 268 SMART SM00062 33 257 1.4E-42 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 SMART SM00418 7 82 1.9E-21 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 SUPERFAMILY SSF46785 3 98 2.83E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 Pfam PF12840 Helix-turn-helix domain 6 66 3.5E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 Gene3D G3DSA:1.10.10.10 5 106 1.5E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 1.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 1.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS28430 2d1161435b61025478da8064b29e1738 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 1.3E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 17 413 1.4E-115 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 SUPERFAMILY SSF56266 20 410 1.29E-136 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 413 155.343 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 26 411 0.0 T 06-07-2017 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 Gene3D G3DSA:3.60.70.12 15 285 8.8E-95 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS14010 b29412a3954dec9214ac0fc5f8f5af50 413 Pfam PF01960 ArgJ family 24 413 3.3E-140 T 06-07-2017 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 134 184 5.1E-9 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 293 313 5.1E-9 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 SUPERFAMILY SSF56003 149 749 8.64E-164 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 SUPERFAMILY SSF54665 10 154 2.88E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 31 145 1.1E-21 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 450 596 2.4E-25 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 366 449 4.0E-56 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 609 748 4.0E-56 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 171 693 5.2E-122 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.30.365.10 185 289 4.3E-38 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 SMART SM01008 30 146 6.7E-35 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32565 ed0568faae8c780221d79cff2dd701c0 749 Gene3D G3DSA:3.90.1170.50 12 133 5.1E-35 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 71 92 9.1E-5 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 270 289 9.1E-5 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 171 185 9.1E-5 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 55 71 9.1E-5 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 Pfam PF13416 Bacterial extracellular solute-binding protein 66 337 8.6E-47 T 06-07-2017 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 SUPERFAMILY SSF53850 47 367 3.18E-44 T 06-07-2017 CDO28_RS19990 650e799cb28e79d2e3b29a7ae752322a 371 Gene3D G3DSA:3.40.190.10 155 310 5.8E-33 T 06-07-2017 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00156 Type I copper blue protein family signature 92 106 9.3E-12 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00156 Type I copper blue protein family signature 60 75 9.3E-12 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00156 Type I copper blue protein family signature 46 59 9.3E-12 T 06-07-2017 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 28 143 7.1E-51 T 06-07-2017 IPR012745 Pseudoazurin GO:0005507 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00155 Amicyanin family signature 23 38 4.3E-28 T 06-07-2017 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00155 Amicyanin family signature 81 96 4.3E-28 T 06-07-2017 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00155 Amicyanin family signature 60 75 4.3E-28 T 06-07-2017 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00155 Amicyanin family signature 97 112 4.3E-28 T 06-07-2017 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 PRINTS PR00155 Amicyanin family signature 40 59 4.3E-28 T 06-07-2017 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 SUPERFAMILY SSF49503 34 140 1.17E-30 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 Gene3D G3DSA:2.60.40.420 23 144 1.6E-42 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 94 108 - T 06-07-2017 IPR028871 Blue (type 1) copper protein, binding site CDO28_RS12965 83bb3d9a89698d53f8e5d2807f9786b0 147 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 27 114 2.1E-18 T 06-07-2017 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 TIGRFAM TIGR01178 ade: adenine deaminase 19 564 3.5E-180 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 SUPERFAMILY SSF51338 316 331 1.98E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 SUPERFAMILY SSF51338 14 70 1.98E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 Gene3D G3DSA:2.30.40.10 18 110 2.1E-21 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 Pfam PF01979 Amidohydrolase family 66 347 2.1E-24 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 Pfam PF13382 Adenine deaminase C-terminal domain 395 561 3.5E-65 T 06-07-2017 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 Gene3D G3DSA:2.30.40.10 264 348 2.2E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 Hamap MF_01518 Adenine deaminase [ade]. 19 565 38.023 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS15180 79a92ac43d051dd90556cb0e157874f1 565 SUPERFAMILY SSF51556 70 316 9.41E-31 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS03315 99768ff2b32dfaa5e9650f9d588ba3a7 243 Pfam PF01694 Rhomboid family 81 239 6.6E-27 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDO28_RS03315 99768ff2b32dfaa5e9650f9d588ba3a7 243 SUPERFAMILY SSF144091 25 242 2.88E-30 T 06-07-2017 CDO28_RS03315 99768ff2b32dfaa5e9650f9d588ba3a7 243 Gene3D G3DSA:1.20.1540.10 33 241 4.9E-29 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDO28_RS17605 66a69a6f6763c77498a37006cce89312 306 SUPERFAMILY SSF161098 91 287 4.14E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17605 66a69a6f6763c77498a37006cce89312 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 6.5E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17605 66a69a6f6763c77498a37006cce89312 306 Gene3D G3DSA:1.10.3720.10 91 296 2.2E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 ProSitePatterns PS00211 ABC transporters family signature. 448 462 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 SUPERFAMILY SSF52540 10 261 2.2E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 SMART SM00382 333 540 1.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 SMART SM00382 39 239 5.3E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Pfam PF00005 ABC transporter 30 190 2.8E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Pfam PF00005 ABC transporter 325 476 1.4E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Gene3D G3DSA:3.40.50.300 295 549 5.5E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Gene3D G3DSA:3.40.50.300 9 263 1.6E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 SUPERFAMILY SSF52540 321 547 5.22E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 273 3.8E-5 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 530 553 0.033 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS33960 39725c7ac37219816af8cf419cd99216 557 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 4.4E-18 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.8E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.8E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 SUPERFAMILY SSF48498 102 201 4.82E-11 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 Gene3D G3DSA:1.10.357.10 1 199 5.1E-38 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 SUPERFAMILY SSF46689 1 74 4.69E-20 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS09650 116a30c9d682c37e87a0326de936f850 216 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 95 191 8.6E-12 T 06-07-2017 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 CDO28_RS04920 7ae87c40d20104a36f1c6230f95e9db2 313 Pfam PF00892 EamA-like transporter family 17 152 2.4E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS04920 7ae87c40d20104a36f1c6230f95e9db2 313 TIGRFAM TIGR00688 rarD: protein RarD 17 270 3.1E-57 T 06-07-2017 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 CDO28_RS04920 7ae87c40d20104a36f1c6230f95e9db2 313 SUPERFAMILY SSF103481 56 154 7.06E-8 T 06-07-2017 CDO28_RS04920 7ae87c40d20104a36f1c6230f95e9db2 313 SUPERFAMILY SSF103481 214 293 1.31E-6 T 06-07-2017 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 184 239 1.9E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 Gene3D G3DSA:3.30.450.80 7 186 1.9E-30 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 Gene3D G3DSA:1.10.10.10 187 245 6.9E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 SMART SM00421 182 239 2.9E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 SUPERFAMILY SSF75516 6 171 2.62E-36 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 Pfam PF03472 Autoinducer binding domain 18 164 6.9E-32 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 199 3.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 227 3.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 215 3.6E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS10950 b8f67a1cefbd62e670965230089a1624 246 SUPERFAMILY SSF46894 175 245 1.05E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 Gene3D G3DSA:2.60.120.280 13 157 9.0E-13 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 SUPERFAMILY SSF51215 9 149 3.14E-20 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 Gene3D G3DSA:1.10.10.60 167 219 1.8E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 SUPERFAMILY SSF46689 168 217 8.96E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 Pfam PF02311 AraC-like ligand binding domain 21 137 1.8E-23 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 SUPERFAMILY SSF46689 220 266 8.51E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 SMART SM00342 183 265 1.8E-24 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 Pfam PF12833 Helix-turn-helix domain 189 266 1.2E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS08820 57faeacb9eea94b4ee67b420879eb3b4 269 Gene3D G3DSA:1.10.10.60 220 265 2.2E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 12 109 7.7E-16 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 SUPERFAMILY SSF54211 12 111 3.29E-23 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 16 108 5.0E-19 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 Pfam PF00825 Ribonuclease P 12 110 1.3E-21 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 Gene3D G3DSA:3.30.230.10 12 112 8.7E-27 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS08315 2f6c71db7a56019fa52001edfc32354e 128 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 7 118 14.7 T 06-07-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 298 5.3E-105 T 06-07-2017 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 SUPERFAMILY SSF53850 41 252 4.5E-55 T 06-07-2017 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 30 288 3.8E-64 T 06-07-2017 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 6 261 6.1E-71 T 06-07-2017 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 Gene3D G3DSA:3.40.190.10 67 130 7.3E-4 T 06-07-2017 CDO28_RS26955 64f72246bf41d217bf07394562e7d056 301 Gene3D G3DSA:3.40.190.10 131 249 9.0E-13 T 06-07-2017 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 Gene3D G3DSA:1.10.287.130 406 465 4.2E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 Pfam PF00512 His Kinase A (phospho-acceptor) domain 408 473 3.5E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 580 590 3.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 576 3.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 609 3.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 628 3.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 SMART SM00388 406 476 9.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 Gene3D G3DSA:3.30.565.10 477 630 3.8E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 520 630 1.6E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 SUPERFAMILY SSF55874 473 629 9.56E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 SUPERFAMILY SSF47384 405 473 3.73E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23375 ddfe7a50306305e6c4230b88ca6b4a0b 633 SMART SM00387 519 631 1.5E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 601 8.1E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Pfam PF00512 His Kinase A (phospho-acceptor) domain 384 448 8.4E-11 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Gene3D G3DSA:3.30.565.10 452 603 2.0E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Gene3D G3DSA:3.30.450.20 214 330 1.8E-8 T 06-07-2017 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SMART SM00388 384 449 2.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 3.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 557 3.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 3.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 543 3.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SUPERFAMILY SSF55874 440 604 8.77E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Gene3D G3DSA:3.40.50.2300 626 739 2.4E-16 T 06-07-2017 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SMART SM00448 624 738 4.3E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SMART SM00387 493 602 3.4E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Pfam PF00072 Response regulator receiver domain 626 738 7.1E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SUPERFAMILY SSF52172 626 740 3.98E-18 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SUPERFAMILY SSF47384 369 448 1.79E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Gene3D G3DSA:1.10.287.130 377 445 1.6E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 Pfam PF12860 PAS fold 223 335 8.0E-20 T 06-07-2017 CDO28_RS31430 bc42b6f5d8e5233279fc0308eb6d2aee 747 SUPERFAMILY SSF55785 205 330 1.16E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS32135 32f88ed69feb9cb3595e7f5822b726a9 343 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 333 2.1E-39 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.6E-16 T 06-07-2017 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 SUPERFAMILY SSF54909 64 152 1.61E-19 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 4.9E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 SMART SM00344 4 113 4.4E-34 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 Gene3D G3DSA:3.30.70.920 57 141 2.6E-28 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.0E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.0E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.0E-11 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 Gene3D G3DSA:1.10.10.10 5 55 5.8E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12395 e1b6cf9624ae1bae8a55af50f5ad11c5 159 SUPERFAMILY SSF46785 3 63 1.71E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Gene3D G3DSA:2.160.10.10 96 248 1.4E-56 T 06-07-2017 CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 SUPERFAMILY SSF51161 11 269 9.56E-68 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 6 285 55.715 T 06-07-2017 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 139 173 6.2E-5 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 141 169 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 182 217 5.4E-11 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Gene3D G3DSA:1.10.166.10 7 75 1.9E-27 T 06-07-2017 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 8 74 3.3E-23 T 06-07-2017 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 CDO28_RS08380 fb76cc963a2c91bd0d7babd36b9c178f 285 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 9 284 6.6E-123 T 06-07-2017 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 391 8.5E-143 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Gene3D G3DSA:3.40.47.10 5 125 3.5E-75 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Gene3D G3DSA:3.40.47.10 195 276 3.5E-75 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 06-07-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 PIRSF PIRSF000429 1 393 2.4E-125 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 SUPERFAMILY SSF53901 6 269 5.99E-86 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Pfam PF00108 Thiolase, N-terminal domain 6 262 4.6E-106 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 06-07-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 06-07-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 SUPERFAMILY SSF53901 271 392 1.44E-45 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Gene3D G3DSA:3.40.47.10 277 392 4.0E-71 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Gene3D G3DSA:3.40.47.10 143 194 4.0E-71 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS11025 7e42946edc36ea174c33a0b18a9318ab 393 Pfam PF02803 Thiolase, C-terminal domain 271 392 4.1E-51 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS22735 cb2970a7f25370d78240c778ba1904f2 230 Gene3D G3DSA:2.30.110.10 5 156 3.0E-55 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS22735 cb2970a7f25370d78240c778ba1904f2 230 Pfam PF01613 Flavin reductase like domain 16 156 1.6E-33 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS22735 cb2970a7f25370d78240c778ba1904f2 230 SMART SM00903 15 158 4.7E-54 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS22735 cb2970a7f25370d78240c778ba1904f2 230 SUPERFAMILY SSF50475 6 157 1.91E-47 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS18775 f50401271a3441dbd211731c00aa2e8b 302 Pfam PF00892 EamA-like transporter family 150 278 1.6E-6 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS18775 f50401271a3441dbd211731c00aa2e8b 302 Pfam PF00892 EamA-like transporter family 8 140 1.1E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS18775 f50401271a3441dbd211731c00aa2e8b 302 SUPERFAMILY SSF103481 196 286 4.58E-11 T 06-07-2017 CDO28_RS18775 f50401271a3441dbd211731c00aa2e8b 302 SUPERFAMILY SSF103481 45 144 1.01E-13 T 06-07-2017 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 Pfam PF12833 Helix-turn-helix domain 230 306 4.5E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 14 189 3.0E-20 T 06-07-2017 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 SUPERFAMILY SSF46689 259 307 1.34E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 Gene3D G3DSA:1.10.10.60 259 306 7.0E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 SMART SM00342 223 305 1.7E-24 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 289 2.2E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS01140 7560106c1ff1cc1faca11535dd307d4f 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 289 305 2.2E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 Gene3D G3DSA:3.20.20.80 161 579 6.1E-110 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 Gene3D G3DSA:2.60.40.10 14 160 3.2E-52 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 11 691 0.0 T 06-07-2017 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 SUPERFAMILY SSF81296 14 152 2.07E-46 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 SUPERFAMILY SSF51011 593 691 2.23E-13 T 06-07-2017 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 SMART SM00642 163 571 7.2E-8 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 Pfam PF00128 Alpha amylase, catalytic domain 198 309 1.8E-8 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 SUPERFAMILY SSF51445 142 476 1.97E-123 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 SUPERFAMILY SSF51445 505 578 1.97E-123 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 14 102 3.5E-18 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS29090 bdf8dcd0249a68dcfc41ca1682dd0121 698 Gene3D G3DSA:2.60.40.1180 594 673 1.1E-14 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS22015 be63dfa0377c122531adc41f3bb5d9bc 270 Pfam PF09865 Predicted periplasmic protein (DUF2092) 45 255 2.6E-70 T 06-07-2017 IPR019207 Protein of unknown function DUF2092, periplasmic CDO28_RS22015 be63dfa0377c122531adc41f3bb5d9bc 270 PIRSF PIRSF012443 1 270 1.3E-131 T 06-07-2017 IPR019207 Protein of unknown function DUF2092, periplasmic CDO28_RS22015 be63dfa0377c122531adc41f3bb5d9bc 270 SUPERFAMILY SSF89392 49 254 2.94E-15 T 06-07-2017 IPR029046 Lipoprotein localisation LolA/LolB/LppX CDO28_RS20965 14f3cd617a3d7345c1587c88e5d1ff9e 311 SUPERFAMILY SSF161098 95 294 3.43E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20965 14f3cd617a3d7345c1587c88e5d1ff9e 311 Gene3D G3DSA:1.10.3720.10 96 306 1.9E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20965 14f3cd617a3d7345c1587c88e5d1ff9e 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 309 1.1E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21545 6586636670fa068661628f97fdc58a37 278 TIGRFAM TIGR02587 TIGR02587: putative integral membrane protein TIGR02587 13 278 1.8E-128 T 06-07-2017 IPR013416 Conserved hypothetical protein CHP02587, putative integral membrane CDO28_RS21545 6586636670fa068661628f97fdc58a37 278 Pfam PF09622 Putative integral membrane protein (DUF2391) 19 278 1.5E-89 T 06-07-2017 IPR024464 Protein of unknown function DUF2391 CDO28_RS06280 5d5b27c0773c434d655d1c8edfa1ba33 398 Pfam PF07690 Major Facilitator Superfamily 24 252 3.7E-23 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS06280 5d5b27c0773c434d655d1c8edfa1ba33 398 Gene3D G3DSA:1.20.1250.20 220 392 8.0E-16 T 06-07-2017 CDO28_RS06280 5d5b27c0773c434d655d1c8edfa1ba33 398 SUPERFAMILY SSF103473 14 393 1.44E-48 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS06280 5d5b27c0773c434d655d1c8edfa1ba33 398 Gene3D G3DSA:1.20.1250.20 19 199 1.1E-19 T 06-07-2017 CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 SUPERFAMILY SSF53383 1 398 7.85E-113 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 Gene3D G3DSA:3.40.640.10 66 282 3.8E-89 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 3 403 1.3E-214 T 06-07-2017 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 246 255 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 Gene3D G3DSA:3.90.1150.10 283 394 1.3E-27 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS12115 9bbdf82c13d4666eb5f075c8b147592c 406 Pfam PF00155 Aminotransferase class I and II 48 392 7.8E-79 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Gene3D G3DSA:2.40.10.10 167 278 4.2E-42 T 06-07-2017 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 134 154 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 209 226 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 317 329 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 113 125 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 231 248 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 PRINTS PR00834 HtrA/DegQ protease family signature 175 199 2.9E-52 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Pfam PF13180 PDZ domain 277 368 1.6E-14 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SUPERFAMILY SSF50156 408 502 3.55E-12 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SUPERFAMILY SSF50156 261 368 1.35E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Gene3D G3DSA:2.40.10.10 38 165 8.7E-36 T 06-07-2017 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SMART SM00228 407 491 0.073 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SMART SM00228 277 359 1.4E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 494 4.3E-142 T 06-07-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Pfam PF13365 Trypsin-like peptidase domain 104 238 1.3E-34 T 06-07-2017 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SUPERFAMILY SSF50494 19 59 7.02E-65 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 SUPERFAMILY SSF50494 101 287 7.02E-65 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Gene3D G3DSA:2.30.42.10 279 374 1.2E-26 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS16690 1c8419589be3d676fce47f9ee2f83a93 503 Gene3D G3DSA:2.30.42.10 408 502 2.1E-14 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS11460 65531dcb973f449cb0bcc12c69147037 126 Pfam PF01042 Endoribonuclease L-PSP 14 123 4.4E-23 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS11460 65531dcb973f449cb0bcc12c69147037 126 SUPERFAMILY SSF55298 1 125 9.42E-37 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS11460 65531dcb973f449cb0bcc12c69147037 126 Gene3D G3DSA:3.30.1330.40 1 126 2.3E-35 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS27250 45876f4b31dfd8c3e0731ea977441946 300 Gene3D G3DSA:3.40.50.720 2 234 1.4E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27250 45876f4b31dfd8c3e0731ea977441946 300 SUPERFAMILY SSF51735 2 291 1.21E-90 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27250 45876f4b31dfd8c3e0731ea977441946 300 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 289 6.9E-91 T 06-07-2017 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581 CDO28_RS27250 45876f4b31dfd8c3e0731ea977441946 300 Pfam PF04321 RmlD substrate binding domain 2 291 5.4E-100 T 06-07-2017 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581 CDO28_RS15855 fb04ec6f71b4a2f67cf7897669132af2 120 Gene3D G3DSA:3.10.180.10 1 116 6.9E-35 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS15855 fb04ec6f71b4a2f67cf7897669132af2 120 SUPERFAMILY SSF54593 5 116 1.88E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS15855 fb04ec6f71b4a2f67cf7897669132af2 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 111 1.2E-11 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.928 T 06-07-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 06-07-2017 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 8.3E-98 T 06-07-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 Gene3D G3DSA:3.30.1140.32 108 207 8.9E-47 T 06-07-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 SUPERFAMILY SSF54821 108 206 4.05E-40 T 06-07-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 Gene3D G3DSA:3.30.300.20 17 107 1.3E-34 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 SUPERFAMILY SSF54814 2 106 4.97E-40 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 Pfam PF07650 KH domain 38 110 7.0E-21 T 06-07-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 3.5E-40 T 06-07-2017 CDO28_RS03600 9b1bdba48e6914903070adac8bd6f853 237 SMART SM00322 60 125 7.9E-10 T 06-07-2017 IPR004087 K Homology domain GO:0003676 CDO28_RS15170 a6f19165fb8014c55cc1418e625c2987 305 Gene3D G3DSA:3.40.1190.20 4 296 4.5E-63 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS15170 a6f19165fb8014c55cc1418e625c2987 305 Pfam PF00294 pfkB family carbohydrate kinase 4 296 3.4E-49 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS15170 a6f19165fb8014c55cc1418e625c2987 305 SUPERFAMILY SSF53613 4 297 3.43E-67 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS24150 f4b0fa790c52effe913574bc8ed16ab2 99 Pfam PF04956 TrbC/VIRB2 family 5 96 2.3E-24 T 06-07-2017 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Pfam PF13493 Domain of unknown function (DUF4118) 403 508 2.3E-26 T 06-07-2017 IPR025201 Sensor protein KdpD, transmembrane domain CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Gene3D G3DSA:1.20.120.620 400 502 5.9E-26 T 06-07-2017 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Pfam PF00582 Universal stress protein family 255 368 2.2E-7 T 06-07-2017 IPR006016 UspA GO:0006950 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SUPERFAMILY SSF52402 255 368 1.0E-11 T 06-07-2017 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Gene3D G3DSA:3.30.565.10 717 887 7.8E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Pfam PF00512 His Kinase A (phospho-acceptor) domain 665 731 7.1E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Gene3D G3DSA:3.40.50.620 249 349 2.0E-10 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SUPERFAMILY SSF52540 17 196 2.86E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SUPERFAMILY SSF55781 506 650 9.81E-6 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 775 885 3.9E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 25 234 1.1E-94 T 06-07-2017 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 811 825 2.5E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 829 839 2.5E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 871 884 2.5E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 845 863 2.5E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Gene3D G3DSA:1.10.287.130 659 716 1.4E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SMART SM00388 663 731 9.0E-15 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SUPERFAMILY SSF47384 657 731 1.79E-14 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SUPERFAMILY SSF55874 721 887 6.29E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 SMART SM00387 775 887 1.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS20440 91d9608bd1f39ce569e67e463503f804 896 Gene3D G3DSA:3.40.50.300 24 233 3.6E-97 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 Pfam PF02913 FAD linked oxidases, C-terminal domain 229 476 1.1E-41 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 Gene3D G3DSA:3.30.465.10 108 229 9.0E-38 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 SUPERFAMILY SSF56176 18 229 4.91E-70 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 Gene3D G3DSA:1.10.45.10 439 476 5.3E-7 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 Gene3D G3DSA:3.30.43.10 15 107 4.4E-21 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 Pfam PF01565 FAD binding domain 53 190 6.9E-37 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS21395 a0c1d65db4781f16a1b317dacf00eebb 481 SUPERFAMILY SSF55103 203 479 9.32E-52 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 ProSitePatterns PS00756 Protein secY signature 2. 174 191 - T 06-07-2017 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 430 1.7E-129 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 371 389 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 316 338 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 1.5E-96 T 06-07-2017 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 434 29.625 T 06-07-2017 IPR026593 Protein translocase subunit SecY CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 Pfam PF00344 SecY translocase 81 418 1.3E-115 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 SUPERFAMILY SSF103491 15 425 2.35E-130 T 06-07-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 Gene3D G3DSA:1.10.3370.10 16 438 4.0E-164 T 06-07-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS03530 7fa23292e21d5222bfe7fd8a0e4c73b0 446 PIRSF PIRSF004557 2 442 9.1E-121 T 06-07-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 SMART SM00382 380 566 5.2E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 SUPERFAMILY SSF52540 344 591 7.62E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 Pfam PF00664 ABC transporter transmembrane region 33 307 2.2E-18 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 Gene3D G3DSA:1.20.1560.10 21 339 5.6E-39 T 06-07-2017 CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 Gene3D G3DSA:3.40.50.300 353 584 1.0E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 SUPERFAMILY SSF90123 21 339 3.92E-45 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS28070 fcab4e0b64b17756df1717a761b6f921 604 Pfam PF00005 ABC transporter 373 520 2.8E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 SUPERFAMILY SSF110997 327 405 3.14E-5 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 130 143 2.4E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 50 61 2.4E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 103 120 2.4E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 21 242 7.7E-64 T 06-07-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 SUPERFAMILY SSF56601 6 258 2.33E-74 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 Pfam PF05036 Sporulation related domain 328 405 8.2E-9 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS06110 ebf3f094ce2ca99c8c0aa5af65b3f4b0 409 Gene3D G3DSA:3.40.710.10 23 258 2.4E-86 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS10785 34950c73ab4f1d4afe73c7c42096edc6 86 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 44 4.6E-10 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS10785 34950c73ab4f1d4afe73c7c42096edc6 86 SUPERFAMILY SSF89447 4 73 9.42E-12 T 06-07-2017 CDO28_RS10785 34950c73ab4f1d4afe73c7c42096edc6 86 SMART SM00966 8 48 2.8E-4 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS10785 34950c73ab4f1d4afe73c7c42096edc6 86 Gene3D G3DSA:2.10.260.10 3 57 6.0E-9 T 06-07-2017 CDO28_RS11535 cad6cfcc56b72084e7a4b1070779110d 163 SUPERFAMILY SSF81301 54 158 4.41E-36 T 06-07-2017 CDO28_RS11535 cad6cfcc56b72084e7a4b1070779110d 163 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 47 153 24.917 T 06-07-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CDO28_RS11535 cad6cfcc56b72084e7a4b1070779110d 163 Pfam PF02410 Ribosomal silencing factor during starvation 58 152 8.3E-26 T 06-07-2017 CDO28_RS11535 cad6cfcc56b72084e7a4b1070779110d 163 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 55 152 1.5E-34 T 06-07-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CDO28_RS11535 cad6cfcc56b72084e7a4b1070779110d 163 Gene3D G3DSA:3.30.460.10 53 153 7.9E-36 T 06-07-2017 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 SUPERFAMILY SSF53927 8 150 1.65E-41 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 SUPERFAMILY SSF53597 297 394 3.8E-46 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 SUPERFAMILY SSF53597 150 257 3.8E-46 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 1.0E-16 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 Gene3D G3DSA:3.40.430.10 134 255 2.1E-75 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 Gene3D G3DSA:3.40.430.10 293 399 2.1E-75 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 Gene3D G3DSA:3.40.140.10 7 133 7.3E-29 T 06-07-2017 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 Pfam PF01872 RibD C-terminal domain 152 393 6.5E-35 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS04440 abf8c497041ebefb890ff38c9368df36 401 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 12 249 6.5E-80 T 06-07-2017 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 CDO28_RS09160 5bd84862fe7f0982143dd320c9024786 327 Pfam PF02915 Rubrerythrin 20 156 4.5E-35 T 06-07-2017 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 CDO28_RS09160 5bd84862fe7f0982143dd320c9024786 327 Gene3D G3DSA:1.20.1260.10 17 156 5.5E-25 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS09160 5bd84862fe7f0982143dd320c9024786 327 SUPERFAMILY SSF47240 10 161 7.22E-31 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS09160 5bd84862fe7f0982143dd320c9024786 327 PIRSF PIRSF035918 4 327 1.1E-186 T 06-07-2017 IPR017040 Uncharacterised conserved protein UCP035918 , rubrerythrin/DUF125-related CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 Gene3D G3DSA:3.40.190.10 98 180 4.2E-16 T 06-07-2017 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 Pfam PF03466 LysR substrate binding domain 99 252 3.2E-26 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 3.3E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 3.3E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 3.3E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 73 2.1E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 Gene3D G3DSA:1.10.10.10 13 90 2.6E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 SUPERFAMILY SSF46785 10 120 6.5E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 Gene3D G3DSA:3.40.190.10 191 248 0.001 T 06-07-2017 CDO28_RS17395 4cf28dcb2bcd7ccaa760417e8f9b1957 298 SUPERFAMILY SSF53850 98 294 5.55E-27 T 06-07-2017 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Gene3D G3DSA:3.10.410.10 447 535 2.7E-37 T 06-07-2017 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 SUPERFAMILY SSF52540 7 557 7.67E-245 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Pfam PF01268 Formate--tetrahydrofolate ligase 5 559 3.9E-265 T 06-07-2017 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 106 116 - T 06-07-2017 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Gene3D G3DSA:3.30.1510.10 132 250 1.5E-54 T 06-07-2017 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 4 559 47.985 T 06-07-2017 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Gene3D G3DSA:3.40.50.300 251 444 1.5E-147 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 Gene3D G3DSA:3.40.50.300 17 131 1.5E-147 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15260 d2fc0dfaa49dbb22acf7c9fa4f7956f1 559 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 331 342 - T 06-07-2017 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS21505 453e109c40cbbf2e086deab4e4bd4d4f 203 Gene3D G3DSA:3.40.50.150 20 185 1.7E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21505 453e109c40cbbf2e086deab4e4bd4d4f 203 Pfam PF08241 Methyltransferase domain 38 132 5.3E-19 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS21505 453e109c40cbbf2e086deab4e4bd4d4f 203 SUPERFAMILY SSF53335 20 185 3.82E-34 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16530 a86f8d3500308160ca8940c0e9d5e2ff 154 SMART SM00260 12 146 1.4E-34 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS16530 a86f8d3500308160ca8940c0e9d5e2ff 154 SUPERFAMILY SSF50341 7 148 1.03E-38 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS16530 a86f8d3500308160ca8940c0e9d5e2ff 154 Gene3D G3DSA:2.40.50.180 52 86 1.0E-9 T 06-07-2017 CDO28_RS16530 a86f8d3500308160ca8940c0e9d5e2ff 154 Gene3D G3DSA:2.30.30.40 87 136 5.6E-7 T 06-07-2017 CDO28_RS16530 a86f8d3500308160ca8940c0e9d5e2ff 154 Pfam PF01584 CheW-like domain 14 148 7.4E-36 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Gene3D G3DSA:1.10.1670.10 155 240 9.6E-37 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Pfam PF00633 Helix-hairpin-helix motif 132 159 1.2E-10 T 06-07-2017 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 SUPERFAMILY SSF48150 36 241 5.5E-72 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 219 235 7.8E-6 T 06-07-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 TIGRFAM TIGR01083 nth: endonuclease III 37 226 4.1E-83 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 SMART SM00478 70 217 2.1E-61 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Hamap MF_00942 Endonuclease III [nth]. 19 241 38.105 T 06-07-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Gene3D G3DSA:1.10.340.30 55 154 9.3E-37 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 ProSitePatterns PS01155 Endonuclease III family signature. 134 163 - T 06-07-2017 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CDO28_RS09765 5da0b5015213b41a83bcc9b00672f4ef 263 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 66 200 7.7E-22 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 SUPERFAMILY SSF50249 13 147 1.29E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 SUPERFAMILY SSF55681 154 493 1.89E-109 T 06-07-2017 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 Gene3D G3DSA:2.40.50.140 14 147 7.0E-41 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 12 495 8.9E-178 T 06-07-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 Gene3D G3DSA:3.30.930.10 149 491 2.3E-117 T 06-07-2017 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 Pfam PF01336 OB-fold nucleic acid binding domain 63 138 7.5E-14 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 17 496 40.495 T 06-07-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 Pfam PF00152 tRNA synthetases class II (D, K and N) 155 492 2.7E-79 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 255 272 3.9E-28 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 378 394 3.9E-28 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 207 223 3.9E-28 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 237 250 3.9E-28 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS12585 be41910a61e0629b654698110a02dc20 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 191 201 3.9E-28 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 Pfam PF00561 alpha/beta hydrolase fold 76 206 2.0E-20 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 164 177 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 102 117 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 150 163 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 323 345 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 82 100 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 PRINTS PR00412 Epoxide hydrolase signature 289 305 1.2E-14 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 SUPERFAMILY SSF53474 56 344 5.22E-59 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS31655 0ab8729c7559158f11f2d425285dc366 348 Gene3D G3DSA:3.40.50.1820 56 344 2.3E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28490 400528bca4b4fdb345139d1fe1f93f57 326 Gene3D G3DSA:1.10.10.10 28 66 4.7E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28490 400528bca4b4fdb345139d1fe1f93f57 326 Gene3D G3DSA:3.40.50.1360 68 324 4.9E-75 T 06-07-2017 CDO28_RS28490 400528bca4b4fdb345139d1fe1f93f57 326 Pfam PF04198 Putative sugar-binding domain 76 322 4.9E-63 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS28490 400528bca4b4fdb345139d1fe1f93f57 326 SUPERFAMILY SSF100950 75 323 1.26E-66 T 06-07-2017 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 Pfam PF03466 LysR substrate binding domain 93 287 5.8E-34 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS20345 c848656035686281ef637205cefd0e80 294 Gene3D G3DSA:3.40.190.10 95 178 4.0E-28 T 06-07-2017 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 Gene3D G3DSA:1.10.10.10 1 86 5.3E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20345 c848656035686281ef637205cefd0e80 294 SUPERFAMILY SSF46785 4 85 6.13E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20345 c848656035686281ef637205cefd0e80 294 Gene3D G3DSA:3.40.190.10 179 255 4.3E-20 T 06-07-2017 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.4E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.4E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.4E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 SUPERFAMILY SSF53850 94 289 1.41E-36 T 06-07-2017 CDO28_RS20345 c848656035686281ef637205cefd0e80 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.0E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS33095 74e56cf5e21d0e2fe34fb8d044d8e6a1 122 Gene3D G3DSA:2.30.30.240 15 71 3.8E-12 T 06-07-2017 CDO28_RS33095 74e56cf5e21d0e2fe34fb8d044d8e6a1 122 SUPERFAMILY SSF50346 8 121 7.26E-27 T 06-07-2017 IPR011033 PRC-barrel-like CDO28_RS33095 74e56cf5e21d0e2fe34fb8d044d8e6a1 122 Pfam PF05239 PRC-barrel domain 12 88 1.1E-13 T 06-07-2017 IPR027275 PRC-barrel domain CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SUPERFAMILY SSF48008 156 288 3.92E-18 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SMART SM00345 10 68 0.013 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SMART SM00345 92 148 0.058 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SUPERFAMILY SSF46785 99 147 1.33E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 67 4.7E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Pfam PF00392 Bacterial regulatory proteins, gntR family 102 147 3.6E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SMART SM00895 160 285 1.0E-8 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Gene3D G3DSA:1.20.120.530 154 287 7.1E-16 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 SUPERFAMILY SSF46785 3 69 3.73E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Gene3D G3DSA:1.10.10.10 76 146 1.2E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Gene3D G3DSA:1.10.10.10 3 67 3.1E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19505 0011e2efafe7fb996b6ee50b977c9fca 294 Pfam PF07729 FCD domain 162 283 2.5E-12 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 PRINTS PR00990 Ribokinase signature 4 25 1.5E-35 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 PRINTS PR00990 Ribokinase signature 170 185 1.5E-35 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 PRINTS PR00990 Ribokinase signature 31 50 1.5E-35 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 PRINTS PR00990 Ribokinase signature 214 225 1.5E-35 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 PRINTS PR00990 Ribokinase signature 102 115 1.5E-35 T 06-07-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 Hamap MF_01987 Ribokinase [rbsK]. 1 298 22.347 T 06-07-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 Pfam PF00294 pfkB family carbohydrate kinase 2 290 1.5E-57 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 Gene3D G3DSA:3.40.1190.20 2 298 7.2E-78 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS08455 8b375c5c49652c3ff0f007610a528550 299 SUPERFAMILY SSF53613 2 298 3.27E-70 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 16 536 42.894 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 SMART SM00798 147 461 1.6E-204 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Gene3D G3DSA:3.40.140.20 377 526 9.4E-56 T 06-07-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 SMART SM00851 28 142 3.2E-48 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 PIRSF PIRSF000414 11 536 1.2E-202 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Pfam PF01808 AICARFT/IMPCHase bienzyme 148 460 6.5E-117 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Pfam PF02142 MGS-like domain 28 141 8.8E-25 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Gene3D G3DSA:3.40.140.20 252 368 1.1E-46 T 06-07-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 SUPERFAMILY SSF53927 222 536 1.3E-124 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 17 536 1.1E-205 T 06-07-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 SUPERFAMILY SSF52335 16 206 2.35E-66 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS10735 040b1d1b8630e3b3284ca6b80370f52f 536 Gene3D G3DSA:3.40.50.1380 15 198 1.9E-77 T 06-07-2017 IPR011607 Methylglyoxal synthase-like domain CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 Pfam PF01192 RNA polymerase Rpb6 8 58 9.9E-12 T 06-07-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 SMART SM01409 8 60 9.3E-12 T 06-07-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 1.4E-16 T 06-07-2017 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 Gene3D G3DSA:3.90.940.10 1 66 2.4E-10 T 06-07-2017 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 SUPERFAMILY SSF63562 1 81 2.75E-19 T 06-07-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CDO28_RS05190 fc69a39bf965770976857a0c64133d02 135 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 15.461 T 06-07-2017 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS13415 0b6c200f483a3151534429873445eec7 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 23 146 1.6E-30 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 CDO28_RS13415 0b6c200f483a3151534429873445eec7 150 TIGRFAM TIGR02801 tolR: protein TolR 25 144 4.4E-39 T 06-07-2017 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 Gene3D G3DSA:3.50.50.60 104 308 1.5E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 Gene3D G3DSA:3.50.50.60 1 103 1.8E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 299 3.0E-69 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 SUPERFAMILY SSF55424 313 407 2.2E-20 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 SUPERFAMILY SSF51905 1 308 3.01E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 Gene3D G3DSA:3.30.390.30 318 406 4.7E-24 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 6.0E-27 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.0E-27 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 6.0E-27 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 6.0E-27 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 6.0E-27 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 7.1E-22 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 7.1E-22 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 7.1E-22 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 7.1E-22 T 06-07-2017 CDO28_RS33680 e261f1decbee05a4672a933b41b9fcc3 408 Pfam PF14759 Reductase C-terminal 318 406 8.1E-23 T 06-07-2017 IPR028202 Reductase, C-terminal CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 Gene3D G3DSA:3.30.360.10 144 341 3.1E-36 T 06-07-2017 CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 1.8E-23 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 SUPERFAMILY SSF51735 5 156 5.67E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 SUPERFAMILY SSF55347 132 279 2.83E-23 T 06-07-2017 CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 Gene3D G3DSA:3.40.50.720 4 143 4.3E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10035 daa0ac4c12a29fc2d2db94ac0bb65767 357 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 218 7.8E-8 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS28030 7acf767596c89e42069eccd5f5d06d19 127 Pfam PF00072 Response regulator receiver domain 9 115 1.4E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS28030 7acf767596c89e42069eccd5f5d06d19 127 SMART SM00448 7 114 1.3E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS28030 7acf767596c89e42069eccd5f5d06d19 127 Gene3D G3DSA:3.40.50.2300 6 117 3.1E-14 T 06-07-2017 CDO28_RS28030 7acf767596c89e42069eccd5f5d06d19 127 SUPERFAMILY SSF52172 6 117 6.97E-19 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 Gene3D G3DSA:3.30.70.660 110 245 4.2E-49 T 06-07-2017 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 Gene3D G3DSA:3.30.70.580 1 108 3.2E-34 T 06-07-2017 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 SUPERFAMILY SSF55120 1 247 1.04E-83 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 6 241 5.8E-55 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 Pfam PF01416 tRNA pseudouridine synthase 8 106 2.3E-8 T 06-07-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 Pfam PF01416 tRNA pseudouridine synthase 146 247 2.6E-29 T 06-07-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 PIRSF PIRSF001430 1 247 5.9E-73 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS08435 1cef781a7eff18b3cc48c3f95497a851 247 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 247 34.189 T 06-07-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 208 285 4.5E-29 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 SUPERFAMILY SSF53155 124 194 6.08E-19 T 06-07-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 SUPERFAMILY SSF46767 206 286 9.03E-29 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 208 286 1.3E-28 T 06-07-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 SUPERFAMILY SSF46689 18 69 1.43E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Gene3D G3DSA:1.10.10.60 14 73 1.6E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Pfam PF12833 Helix-turn-helix domain 41 120 7.9E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 SUPERFAMILY SSF46689 73 121 2.06E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 SMART SM00342 35 118 3.7E-15 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Gene3D G3DSA:3.30.160.70 117 195 5.4E-27 T 06-07-2017 CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Gene3D G3DSA:1.10.10.10 206 287 2.8E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09775 79546efcb88797b6d8eda7e78870d2c2 290 Gene3D G3DSA:1.10.10.60 74 116 1.2E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 Gene3D G3DSA:3.40.50.2300 21 219 9.9E-64 T 06-07-2017 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 SUPERFAMILY SSF53822 21 362 7.07E-92 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 Pfam PF13458 Periplasmic binding protein 22 357 1.6E-58 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 324 339 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 63 81 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 22 38 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 44 60 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 84 94 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS21950 cd11d1254c82428089bca8110e4430a0 363 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 250 268 6.9E-25 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Pfam PF02811 PHP domain 5 120 2.5E-8 T 06-07-2017 IPR004013 PHP domain GO:0003824 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Gene3D G3DSA:1.10.150.280 801 839 2.4E-4 T 06-07-2017 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Gene3D G3DSA:3.20.20.140 5 236 1.4E-10 T 06-07-2017 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 272 694 7.3E-151 T 06-07-2017 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 SMART SM00481 4 71 8.0E-10 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Pfam PF14579 Helix-hairpin-helix motif 767 859 1.1E-21 T 06-07-2017 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 SUPERFAMILY SSF89550 10 243 6.28E-8 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 3 1087 13.802 T 06-07-2017 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS23235 b622e1724b89ccec41f9a3054c53e352 1087 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 4 982 4.9E-167 T 06-07-2017 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Gene3D G3DSA:3.40.50.300 271 531 1.6E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 SUPERFAMILY SSF52540 277 520 1.36E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 SUPERFAMILY SSF52540 5 255 5.56E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Pfam PF00005 ABC transporter 302 453 2.6E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Pfam PF00005 ABC transporter 26 183 1.2E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 268 1.2E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 512 538 2.6E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 Gene3D G3DSA:3.40.50.300 4 257 2.6E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 SMART SM00382 34 233 8.1E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 SMART SM00382 310 502 7.7E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS25695 2cdb4777d1a7f0ad5529c7047342dcf9 551 ProSitePatterns PS00211 ABC transporters family signature. 425 439 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12010 ffe27a4438b93d90dace2709dd0d53d3 159 Gene3D G3DSA:3.40.30.10 78 156 4.0E-4 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS12010 ffe27a4438b93d90dace2709dd0d53d3 159 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 23 156 2.5E-41 T 06-07-2017 CDO28_RS12010 ffe27a4438b93d90dace2709dd0d53d3 159 SUPERFAMILY SSF52833 13 157 8.95E-47 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS12010 ffe27a4438b93d90dace2709dd0d53d3 159 PIRSF PIRSF000216 7 159 2.2E-45 T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04860 c7410cef62ac985323ff5ef62ae4af83 217 Pfam PF03591 AzlC protein 3 142 1.8E-34 T 06-07-2017 IPR011606 Branched-chain amino acid transport, permease CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 SUPERFAMILY SSF110849 71 165 1.15E-18 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 2 330 8.4E-127 T 06-07-2017 IPR017819 Plasmid partitioning protein, RepB CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 SMART SM00470 72 163 8.3E-19 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 Pfam PF07506 RepB plasmid partitioning protein 164 325 9.3E-28 T 06-07-2017 IPR011111 RepB plasmid partition CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 SUPERFAMILY SSF109709 158 218 3.79E-7 T 06-07-2017 CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 Gene3D G3DSA:3.90.1530.10 71 168 5.8E-14 T 06-07-2017 CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 69 243 8.8E-35 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDO28_RS30820 c720e478b4c911491dab6d8e9df30dac 334 Pfam PF02195 ParB-like nuclease domain 74 162 4.0E-15 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SUPERFAMILY SSF50249 329 422 2.91E-24 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SUPERFAMILY SSF52113 642 715 1.36E-18 T 06-07-2017 IPR001357 BRCT domain CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 129 158 - T 06-07-2017 IPR018239 NAD-dependent DNA ligase, active site CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:1.10.150.20 543 631 7.4E-26 T 06-07-2017 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:2.40.50.140 331 414 7.7E-33 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 643 715 7.4E-12 T 06-07-2017 IPR001357 BRCT domain CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 PIRSF PIRSF001604 7 717 1.9E-215 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SMART SM00278 551 570 320.0 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SMART SM00278 519 538 200.0 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SMART SM00278 593 612 1.8 T 06-07-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 343 358 - T 06-07-2017 IPR033136 NAD-dependent DNA ligase, conserved site CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Pfam PF12826 Helix-hairpin-helix motif 549 622 9.1E-17 T 06-07-2017 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 430 463 1.5E-7 T 06-07-2017 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 23 711 4.5E-222 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SMART SM00292 641 717 4.0E-11 T 06-07-2017 IPR001357 BRCT domain CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 420 7.3E-33 T 06-07-2017 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:1.10.287.610 7 79 2.7E-21 T 06-07-2017 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SUPERFAMILY SSF47781 427 627 2.8E-45 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:3.30.470.30 133 264 5.3E-50 T 06-07-2017 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SUPERFAMILY SSF56091 12 328 8.02E-109 T 06-07-2017 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 SMART SM00532 15 477 9.3E-228 T 06-07-2017 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Hamap MF_01588 DNA ligase [ligA]. 14 715 48.375 T 06-07-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 16 330 6.9E-113 T 06-07-2017 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:3.40.50.10190 640 715 3.8E-25 T 06-07-2017 IPR001357 BRCT domain CDO28_RS16455 f259e2f8fa98521c31ccd62b905d667b 717 Gene3D G3DSA:1.10.150.20 464 541 1.1E-17 T 06-07-2017 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 SMART SM00342 202 285 2.9E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 Gene3D G3DSA:1.10.10.60 189 238 8.3E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 SUPERFAMILY SSF46689 189 236 9.41E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 Pfam PF12833 Helix-turn-helix domain 208 285 7.2E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 SUPERFAMILY SSF46689 238 285 3.63E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23525 4163e71f243e1125bc11bbcd1a758ef4 285 Gene3D G3DSA:1.10.10.60 239 285 5.3E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 Pfam PF08544 GHMP kinases C terminal 218 282 4.2E-7 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 SUPERFAMILY SSF55060 175 294 4.68E-28 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 SUPERFAMILY SSF54211 11 173 6.56E-34 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 11 296 32.345 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 PIRSF PIRSF010376 10 301 4.4E-85 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 Gene3D G3DSA:3.30.230.10 12 173 7.1E-43 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 Gene3D G3DSA:3.30.70.890 176 296 6.2E-29 T 06-07-2017 IPR013750 GHMP kinase, C-terminal domain CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 Pfam PF00288 GHMP kinases N terminal domain 101 155 1.3E-7 T 06-07-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 CDO28_RS06365 7beba6740eff4474a060809e075b7da4 301 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 11 278 5.1E-56 T 06-07-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 SUPERFAMILY SSF47413 1 54 1.22E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 1.1E-12 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 SUPERFAMILY SSF53822 63 337 4.71E-69 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 Gene3D G3DSA:3.40.50.2300 175 334 4.5E-57 T 06-07-2017 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 SMART SM00354 1 73 3.2E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 Gene3D G3DSA:3.40.50.2300 61 174 7.8E-17 T 06-07-2017 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 Pfam PF13377 Periplasmic binding protein-like domain 172 333 1.6E-38 T 06-07-2017 CDO28_RS27340 41ed457c00e05ec56a77f0577473adee 350 Gene3D G3DSA:1.10.260.40 1 54 2.1E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 Gene3D G3DSA:3.30.565.10 5 119 1.6E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 11 117 2.7E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 SUPERFAMILY SSF55874 6 119 1.44E-25 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 66 76 9.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 104 117 9.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 48 62 9.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 81 99 9.5E-9 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27805 2954ae0e0fafef368fa2ff085d6390a4 127 SMART SM00387 11 120 3.2E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 Pfam PF00919 Uncharacterized protein family UPF0004 4 90 2.6E-18 T 06-07-2017 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 Gene3D G3DSA:3.80.30.20 136 362 9.6E-66 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 SUPERFAMILY SSF102114 127 356 9.16E-53 T 06-07-2017 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 SMART SM00729 137 355 5.6E-55 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 Pfam PF04055 Radical SAM superfamily 142 313 1.2E-21 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 7 390 1.6E-128 T 06-07-2017 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 385 1.3E-98 T 06-07-2017 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 CDO28_RS11145 d382b14813bbaba771c052e55626277b 424 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 06-07-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 CDO28_RS03470 97ba371a2f5bec6b3900af1a4001c27a 261 Pfam PF07542 ATP12 chaperone protein 31 149 1.2E-37 T 06-07-2017 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 CDO28_RS03470 97ba371a2f5bec6b3900af1a4001c27a 261 SUPERFAMILY SSF160909 6 257 5.49E-92 T 06-07-2017 CDO28_RS03470 97ba371a2f5bec6b3900af1a4001c27a 261 Gene3D G3DSA:3.30.2180.10 4 88 5.5E-29 T 06-07-2017 CDO28_RS03470 97ba371a2f5bec6b3900af1a4001c27a 261 Gene3D G3DSA:1.10.3580.10 91 259 1.7E-60 T 06-07-2017 IPR023335 Orthogonal Bundle domain in ATP12 CDO28_RS05230 250e05019b3685aebbb91e63b4a2ce0f 349 SUPERFAMILY SSF56935 55 335 1.28E-17 T 06-07-2017 CDO28_RS05230 250e05019b3685aebbb91e63b4a2ce0f 349 Pfam PF02530 Porin subfamily 24 331 2.9E-103 T 06-07-2017 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 CDO28_RS05230 250e05019b3685aebbb91e63b4a2ce0f 349 Gene3D G3DSA:2.40.160.10 57 339 1.0E-22 T 06-07-2017 IPR023614 Porin domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 SMART SM00271 6 64 1.5E-19 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 SUPERFAMILY SSF49493 186 251 2.35E-9 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 ProSitePatterns PS00636 Nt-dnaJ domain signature. 49 68 - T 06-07-2017 IPR018253 DnaJ domain, conserved site CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 Pfam PF00226 DnaJ domain 7 69 1.5E-19 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 SUPERFAMILY SSF46565 4 72 1.31E-21 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 SUPERFAMILY SSF49493 258 341 8.24E-16 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 Gene3D G3DSA:2.60.260.20 184 251 7.2E-8 T 06-07-2017 CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 Gene3D G3DSA:2.60.260.20 258 329 7.0E-14 T 06-07-2017 CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 Pfam PF01556 DnaJ C terminal domain 191 329 6.6E-20 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 Gene3D G3DSA:1.10.287.110 4 77 5.4E-23 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 PRINTS PR00625 DnaJ domain signature 44 64 4.6E-13 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 PRINTS PR00625 DnaJ domain signature 9 27 4.6E-13 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS06090 84cdef7dcb99238e7fb1549b33d125d2 351 PRINTS PR00625 DnaJ domain signature 27 42 4.6E-13 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS16675 51ae932ee46c1c1650b0e847e732a07a 310 SUPERFAMILY SSF117892 62 195 8.37E-17 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS16675 51ae932ee46c1c1650b0e847e732a07a 310 SMART SM00244 22 189 1.6E-19 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS16675 51ae932ee46c1c1650b0e847e732a07a 310 Pfam PF01145 SPFH domain / Band 7 family 26 205 2.6E-24 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS16675 51ae932ee46c1c1650b0e847e732a07a 310 PIRSF PIRSF005651 1 298 3.6E-75 T 06-07-2017 IPR010200 HflC GO:0016021|GO:0052547 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Gene3D G3DSA:1.10.268.10 371 494 9.2E-43 T 06-07-2017 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 SMART SM00434 19 498 2.9E-281 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Gene3D G3DSA:3.90.199.10 42 224 1.6E-81 T 06-07-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 SUPERFAMILY SSF56719 38 520 8.5E-183 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Gene3D G3DSA:2.120.10.90 529 743 2.4E-113 T 06-07-2017 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Gene3D G3DSA:2.120.10.90 797 898 2.4E-113 T 06-07-2017 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 691 1.2E-6 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 695 742 2.0E-12 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 589 636 1.7E-4 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 800 848 1.1E-9 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 852 898 1.1E-10 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 584 6.7E-13 T 06-07-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 900 23.187 T 06-07-2017 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 SUPERFAMILY SSF101904 532 744 6.41E-92 T 06-07-2017 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 SUPERFAMILY SSF101904 797 910 6.41E-92 T 06-07-2017 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 16 899 0.0 T 06-07-2017 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 40 505 3.0E-153 T 06-07-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS02390 969dbbc42f222cc714fbbff196436048 931 Gene3D G3DSA:3.30.1360.40 244 340 1.5E-40 T 06-07-2017 IPR024946 Arginine repressor C-terminal-like domain CDO28_RS12480 762b2355791f0763494d2859642789c7 256 Gene3D G3DSA:3.30.950.10 144 252 8.2E-49 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12480 762b2355791f0763494d2859642789c7 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 224 9.8E-35 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12480 762b2355791f0763494d2859642789c7 256 Gene3D G3DSA:3.40.1010.10 1 143 9.4E-40 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12480 762b2355791f0763494d2859642789c7 256 PIRSF PIRSF036525 1 255 2.6E-127 T 06-07-2017 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 CDO28_RS12480 762b2355791f0763494d2859642789c7 256 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 250 1.9E-115 T 06-07-2017 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 CDO28_RS12480 762b2355791f0763494d2859642789c7 256 SUPERFAMILY SSF53790 1 249 2.36E-39 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Gene3D G3DSA:3.30.470.30 248 353 4.8E-28 T 06-07-2017 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Pfam PF04679 ATP dependent DNA ligase C terminal region 427 513 1.5E-14 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 238 810 4.8E-222 T 06-07-2017 IPR014143 DNA ligase D CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 SUPERFAMILY SSF50249 414 513 2.8E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 233 520 7.7E-94 T 06-07-2017 IPR014146 DNA ligase D, ligase domain CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Gene3D G3DSA:3.30.1490.70 211 247 1.2E-16 T 06-07-2017 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Gene3D G3DSA:3.30.1490.70 366 408 1.2E-16 T 06-07-2017 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Pfam PF13298 DNA polymerase Ligase (LigD) 35 138 2.1E-38 T 06-07-2017 IPR014144 DNA ligase D, 3'-phosphoesterase domain CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 536 781 2.0E-97 T 06-07-2017 IPR014145 DNA ligase D, polymerase domain CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Gene3D G3DSA:2.40.50.140 412 513 3.5E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 6 160 2.5E-70 T 06-07-2017 IPR014144 DNA ligase D, 3'-phosphoesterase domain CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 SUPERFAMILY SSF56091 201 408 5.28E-46 T 06-07-2017 CDO28_RS29720 8d4b483e2332322bace12f79402a01df 818 Pfam PF01068 ATP dependent DNA ligase domain 219 408 1.2E-26 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 SUPERFAMILY SSF55874 2 201 2.1E-48 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 122 8.0E-10 T 06-07-2017 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Gene3D G3DSA:3.30.230.10 213 324 3.3E-34 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 305 2.5E-89 T 06-07-2017 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 SUPERFAMILY SSF118116 414 604 2.75E-58 T 06-07-2017 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 SMART SM01340 207 325 1.2E-55 T 06-07-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 602 27.995 T 06-07-2017 IPR020667 DNA mismatch repair protein, MutL GO:0006298 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 SUPERFAMILY SSF54211 192 324 5.31E-35 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 208 324 2.4E-36 T 06-07-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 SMART SM00853 419 562 6.3E-54 T 06-07-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Pfam PF08676 MutL C terminal dimerisation domain 415 562 4.1E-48 T 06-07-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 Gene3D G3DSA:3.30.565.10 2 212 6.2E-67 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS06515 c5a868873da9590ff6b88636781db912 605 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 91 97 - T 06-07-2017 IPR014762 DNA mismatch repair, conserved site CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 85 93 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 Gene3D G3DSA:3.10.20.30 48 120 4.9E-30 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 52 112 4.5E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 SUPERFAMILY SSF54292 46 133 6.42E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 Pfam PF01799 [2Fe-2S] binding domain 119 191 6.7E-28 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 SUPERFAMILY SSF47741 130 199 8.64E-28 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23680 644c1ee094f12f85a3c8ed3abc9e6ae1 204 Gene3D G3DSA:1.10.150.120 121 198 6.0E-31 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 SUPERFAMILY SSF53756 19 819 0.0 T 06-07-2017 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 Gene3D G3DSA:3.40.50.2000 19 490 1.3E-193 T 06-07-2017 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 PIRSF PIRSF000460 7 821 1.3E-224 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 21 819 0.0 T 06-07-2017 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 Gene3D G3DSA:3.40.50.2000 491 805 2.3E-131 T 06-07-2017 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 665 677 - T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CDO28_RS12900 91c8f2db1cb00bcf6087582ae8174a95 821 Pfam PF00343 Carbohydrate phosphorylase 109 819 0.0 T 06-07-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 539 569 - T 06-07-2017 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 23 434 2.9E-81 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 Gene3D G3DSA:3.40.50.1820 445 688 2.0E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 Pfam PF00326 Prolyl oligopeptidase family 494 710 1.8E-65 T 06-07-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 Gene3D G3DSA:2.130.10.120 99 438 2.2E-99 T 06-07-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 SUPERFAMILY SSF50993 16 442 6.8E-90 T 06-07-2017 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 SUPERFAMILY SSF53474 446 688 2.29E-42 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 562 582 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 639 661 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 532 551 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 478 496 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 621 636 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS05610 5c12cae20899aea236e4ea94c0a7bf7a 712 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 504 528 2.3E-45 T 06-07-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CDO28_RS28565 25f9bd274b90f593bcfe16bb2f068540 250 SUPERFAMILY SSF51735 1 213 1.89E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28565 25f9bd274b90f593bcfe16bb2f068540 250 Pfam PF13460 NAD(P)H-binding 7 173 2.0E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28565 25f9bd274b90f593bcfe16bb2f068540 250 Gene3D G3DSA:3.40.50.720 1 197 9.7E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 253 287 - T 06-07-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 164 7.0E-35 T 06-07-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Gene3D G3DSA:2.170.190.11 47 140 1.8E-29 T 06-07-2017 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Gene3D G3DSA:2.40.340.10 330 399 4.1E-13 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Gene3D G3DSA:3.90.105.10 141 161 8.1E-10 T 06-07-2017 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Gene3D G3DSA:3.90.105.10 23 46 8.1E-10 T 06-07-2017 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 SUPERFAMILY SSF63882 2 175 7.06E-52 T 06-07-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 SMART SM00852 179 318 6.5E-36 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Pfam PF03454 MoeA C-terminal region (domain IV) 331 399 2.4E-16 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Gene3D G3DSA:3.40.980.10 162 329 1.4E-52 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 SUPERFAMILY SSF63867 327 403 4.32E-17 T 06-07-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 Pfam PF00994 Probable molybdopterin binding domain 179 316 9.0E-23 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS01040 dd2d4352a25f2d10bca0ac934fceb377 406 SUPERFAMILY SSF53218 176 322 9.82E-38 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS04705 3eff9c6d3cebdba61a83435f824f1a92 304 Gene3D G3DSA:3.40.630.30 176 271 7.9E-4 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04705 3eff9c6d3cebdba61a83435f824f1a92 304 Gene3D G3DSA:3.40.630.30 26 140 9.8E-15 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04705 3eff9c6d3cebdba61a83435f824f1a92 304 SUPERFAMILY SSF55729 26 284 1.81E-35 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 SUPERFAMILY SSF54665 14 136 3.27E-36 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 31 135 1.0E-23 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 SMART SM01008 30 139 1.7E-38 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 160 704 4.1E-201 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 SUPERFAMILY SSF56003 140 774 2.88E-206 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 454 609 3.9E-51 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 17 776 0.0 T 06-07-2017 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 283 358 5.3E-21 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 158 186 5.3E-21 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 359 453 2.3E-82 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 619 774 2.3E-82 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.90.1170.50 16 136 1.3E-36 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS28455 ec6be51dc0cc405fae2aa3edae693eef 778 Gene3D G3DSA:3.30.365.10 187 281 3.2E-36 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS07485 1925904e1fc45b4387edc7cf7b6aa535 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 64 318 2.2E-43 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 PIRSF PIRSF001434 1 381 9.9E-100 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 SUPERFAMILY SSF53383 23 377 3.54E-80 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 377 3.8E-81 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 Gene3D G3DSA:3.90.1150.10 256 377 1.2E-19 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS19780 c00df5eca4322330f18189c53e624a34 393 Gene3D G3DSA:3.40.640.10 4 253 1.5E-70 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS32560 a757d88215b665e2ca03f5d32e6a3b17 442 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 268 434 1.5E-32 T 06-07-2017 IPR031475 Putative nucleotide-binding C-terminal domain CDO28_RS32560 a757d88215b665e2ca03f5d32e6a3b17 442 Pfam PF07005 Putative sugar-binding N-terminal domain 7 242 5.8E-52 T 06-07-2017 IPR010737 Putative sugar-binding, N-terminal domain CDO28_RS32560 a757d88215b665e2ca03f5d32e6a3b17 442 SUPERFAMILY SSF142764 7 439 8.5E-91 T 06-07-2017 CDO28_RS30880 2b059fccc20e0034794eb70f1f0a8573 264 Gene3D G3DSA:3.40.50.150 11 223 1.4E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS30880 2b059fccc20e0034794eb70f1f0a8573 264 SUPERFAMILY SSF53335 6 257 4.14E-45 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS30880 2b059fccc20e0034794eb70f1f0a8573 264 Pfam PF08241 Methyltransferase domain 56 150 1.1E-23 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 Pfam PF00696 Amino acid kinase family 13 241 2.2E-41 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 Gene3D G3DSA:2.30.130.10 281 371 1.6E-25 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PRINTS PR00474 Glutamate 5-kinase family signature 49 63 2.0E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 2.0E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PRINTS PR00474 Glutamate 5-kinase family signature 83 111 2.0E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PRINTS PR00474 Glutamate 5-kinase family signature 216 236 2.0E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PRINTS PR00474 Glutamate 5-kinase family signature 123 144 2.0E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 Hamap MF_00456 Glutamate 5-kinase [proB]. 12 264 35.029 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 Pfam PF01472 PUA domain 284 356 6.2E-21 T 06-07-2017 IPR002478 PUA domain GO:0003723 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 TIGRFAM TIGR01027 proB: glutamate 5-kinase 12 371 1.3E-118 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 PIRSF PIRSF000729 7 374 1.7E-120 T 06-07-2017 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 ProSitePatterns PS00902 Glutamate 5-kinase signature. 214 231 - T 06-07-2017 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 SUPERFAMILY SSF88697 283 372 4.97E-23 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 Gene3D G3DSA:3.40.1160.10 12 255 1.7E-50 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 SMART SM00359 283 365 1.5E-13 T 06-07-2017 IPR002478 PUA domain GO:0003723 CDO28_RS11550 cf01b2b59c782335b3631f2bac002529 393 SUPERFAMILY SSF53633 12 256 3.27E-61 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 Pfam PF00732 GMC oxidoreductase 3 293 2.6E-87 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 Pfam PF05199 GMC oxidoreductase 384 519 1.8E-39 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 79 102 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 252 266 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 PIRSF PIRSF000137 1 527 1.5E-147 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 SUPERFAMILY SSF54373 288 470 1.47E-56 T 06-07-2017 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 SUPERFAMILY SSF51905 469 528 6.85E-86 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 SUPERFAMILY SSF51905 1 286 6.85E-86 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 Gene3D G3DSA:3.50.50.60 463 526 5.0E-113 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 Gene3D G3DSA:3.50.50.60 2 124 5.0E-113 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10880 d30d7b2e9c4f123c86db4ddd671aff2a 551 Gene3D G3DSA:3.50.50.60 185 311 5.0E-113 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 SUPERFAMILY SSF53474 4 273 3.19E-53 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 Gene3D G3DSA:3.40.50.1820 5 273 1.7E-58 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 Pfam PF00561 alpha/beta hydrolase fold 22 261 3.9E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 1.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS24180 a85bd0ffc34d44beabe1dd7b89f23059 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 222 236 1.7E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 Pfam PF13091 PLD-like domain 310 440 2.8E-10 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 SUPERFAMILY SSF56024 255 455 8.37E-20 T 06-07-2017 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 Gene3D G3DSA:3.30.870.10 302 442 3.2E-18 T 06-07-2017 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 Gene3D G3DSA:3.30.870.10 77 298 2.5E-30 T 06-07-2017 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 SMART SM00155 181 208 0.066 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 SMART SM00155 399 426 0.039 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 SUPERFAMILY SSF56024 73 293 5.1E-30 T 06-07-2017 CDO28_RS31070 6021e346f02abeb187844ddec46b4fd3 567 Pfam PF00614 Phospholipase D Active site motif 183 208 5.9E-5 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS22075 09535bdc50e325137560965512a9625f 163 SUPERFAMILY SSF50331 37 161 2.67E-21 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS22075 09535bdc50e325137560965512a9625f 163 Gene3D G3DSA:2.40.50.100 40 76 2.0E-7 T 06-07-2017 CDO28_RS22075 09535bdc50e325137560965512a9625f 163 Gene3D G3DSA:2.40.50.100 148 162 2.0E-7 T 06-07-2017 CDO28_RS22075 09535bdc50e325137560965512a9625f 163 Gene3D G3DSA:2.40.50.140 77 146 6.1E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS22075 09535bdc50e325137560965512a9625f 163 SUPERFAMILY SSF52540 1 44 9.2E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22075 09535bdc50e325137560965512a9625f 163 Pfam PF08402 TOBE domain 72 154 2.0E-4 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS05240 28ec8ff5cc9a564afc596d8dd3cafa46 345 Pfam PF02530 Porin subfamily 24 331 7.1E-98 T 06-07-2017 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 CDO28_RS05240 28ec8ff5cc9a564afc596d8dd3cafa46 345 SUPERFAMILY SSF56935 55 334 1.08E-16 T 06-07-2017 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 SUPERFAMILY SSF50249 26 90 2.57E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 SUPERFAMILY SSF50249 121 181 7.93E-17 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 Pfam PF00313 'Cold-shock' DNA-binding domain 121 180 5.1E-15 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 Pfam PF00313 'Cold-shock' DNA-binding domain 27 88 7.2E-15 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 Gene3D G3DSA:2.40.50.140 122 181 6.6E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 Gene3D G3DSA:2.40.50.140 26 88 6.4E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 SMART SM00357 27 91 7.6E-11 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 SMART SM00357 119 183 9.4E-9 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 PRINTS PR00050 Cold shock protein signature 156 174 2.0E-7 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 PRINTS PR00050 Cold shock protein signature 120 135 2.0E-7 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS00710 b885519be1ad4d345c06174c60885994 192 PRINTS PR00050 Cold shock protein signature 141 150 2.0E-7 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 TIGRFAM TIGR01698 PUNP: purine nucleotide phosphorylase 19 262 1.8E-129 T 06-07-2017 IPR011269 Putative purine nucleotide phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 Pfam PF01048 Phosphorylase superfamily 18 261 3.7E-52 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 Gene3D G3DSA:3.40.50.1580 4 262 1.2E-89 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 PIRSF PIRSF000477 1 263 2.1E-85 T 06-07-2017 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 20 261 1.0E-96 T 06-07-2017 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CDO28_RS09940 075b45784d19cd570a74d5cee27e7dd0 265 SUPERFAMILY SSF53167 3 262 2.62E-82 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 Gene3D G3DSA:2.40.170.20 203 714 3.2E-123 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 93 188 7.6E-16 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 SUPERFAMILY SSF56935 44 714 5.72E-119 T 06-07-2017 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 Pfam PF00593 TonB dependent receptor 489 711 3.3E-29 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 94 710 4.1E-96 T 06-07-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 CDO28_RS25345 29edf88f81d244156c3591dade3e7539 714 Gene3D G3DSA:2.170.130.10 71 195 5.9E-29 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS12460 06456dfd4c6cdb4c45a11f39720d14bd 233 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 15 222 7.3E-63 T 06-07-2017 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 CDO28_RS12460 06456dfd4c6cdb4c45a11f39720d14bd 233 SUPERFAMILY SSF161098 7 218 2.75E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12460 06456dfd4c6cdb4c45a11f39720d14bd 233 Gene3D G3DSA:1.10.3720.10 11 225 3.6E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12460 06456dfd4c6cdb4c45a11f39720d14bd 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 218 7.9E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Gene3D G3DSA:2.70.70.10 436 541 2.0E-12 T 06-07-2017 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 SUPERFAMILY SSF51261 438 539 5.75E-10 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Pfam PF00202 Aminotransferase class-III 608 1008 2.1E-80 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Gene3D G3DSA:3.90.1150.10 894 1012 2.4E-37 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 822 860 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Gene3D G3DSA:3.40.640.10 641 893 2.7E-75 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Pfam PF01551 Peptidase family M23 441 541 4.5E-13 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Pfam PF01636 Phosphotransferase enzyme family 32 270 2.4E-28 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 SUPERFAMILY SSF56112 9 327 5.1E-55 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 SUPERFAMILY SSF53383 604 1009 1.38E-108 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS13655 292b623e872e8b9e09f25a74923ac340 1017 Gene3D G3DSA:3.90.1200.10 115 327 2.3E-30 T 06-07-2017 CDO28_RS05345 e147156731f92111514cee19c90fa795 332 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 311 3.1E-68 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS05345 e147156731f92111514cee19c90fa795 332 Gene3D G3DSA:3.40.190.100 113 262 5.8E-35 T 06-07-2017 CDO28_RS05345 e147156731f92111514cee19c90fa795 332 Gene3D G3DSA:3.40.190.10 22 111 1.2E-20 T 06-07-2017 CDO28_RS05345 e147156731f92111514cee19c90fa795 332 Gene3D G3DSA:3.40.190.10 263 321 1.2E-20 T 06-07-2017 CDO28_RS05345 e147156731f92111514cee19c90fa795 332 SUPERFAMILY SSF53850 21 327 2.06E-80 T 06-07-2017 CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 PIRSF PIRSF005496 2 820 0.0 T 06-07-2017 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 SUPERFAMILY SSF52540 19 343 4.15E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 SMART SM00847 392 482 9.4E-14 T 06-07-2017 IPR007502 Helicase-associated domain GO:0004386 CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Pfam PF00271 Helicase conserved C-terminal domain 211 331 5.9E-14 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 7 819 0.0 T 06-07-2017 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Pfam PF08482 ATP-dependent helicase C-terminal 675 806 6.2E-46 T 06-07-2017 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Pfam PF00270 DEAD/DEAH box helicase 21 164 7.3E-8 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 SMART SM00487 5 190 1.2E-21 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 SMART SM00490 234 332 1.7E-17 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Pfam PF04408 Helicase associated domain (HA2) 393 452 4.4E-8 T 06-07-2017 IPR007502 Helicase-associated domain GO:0004386 CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Gene3D G3DSA:3.40.50.300 201 345 1.2E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10300 8a51a32ba26ee021699f5d71b8d25d22 820 Gene3D G3DSA:3.40.50.300 7 165 9.7E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28415 4404b10b2a2fb59f3d84ce268ed31d5e 155 SUPERFAMILY SSF159888 43 153 4.84E-26 T 06-07-2017 CDO28_RS28415 4404b10b2a2fb59f3d84ce268ed31d5e 155 Pfam PF08818 Domain of unknown function (DU1801) 57 147 6.3E-14 T 06-07-2017 IPR014922 Domain of unknown function DUF1801 CDO28_RS32585 9dac8b0bafc901d4a2bc82df5281601e 196 Gene3D G3DSA:2.60.120.590 15 187 1.9E-27 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CDO28_RS32585 9dac8b0bafc901d4a2bc82df5281601e 196 SUPERFAMILY SSF51197 13 185 6.32E-35 T 06-07-2017 CDO28_RS32585 9dac8b0bafc901d4a2bc82df5281601e 196 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 61 184 5.1E-18 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 181 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 Gene3D G3DSA:3.40.50.720 5 119 2.6E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 Gene3D G3DSA:3.40.50.720 120 296 2.2E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 SUPERFAMILY SSF52283 5 139 3.59E-34 T 06-07-2017 CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 293 2.9E-60 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 324 1.5E-26 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 204 226 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS14815 730b7ed1877629808497c6c9801c80c6 325 SUPERFAMILY SSF51735 105 294 1.76E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16055 a3ccde9e60e986f158c62cd23eb8bf91 481 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 17 49 2.5E-4 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS16055 a3ccde9e60e986f158c62cd23eb8bf91 481 Pfam PF01547 Bacterial extracellular solute-binding protein 73 379 2.6E-22 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS16055 a3ccde9e60e986f158c62cd23eb8bf91 481 SUPERFAMILY SSF53850 61 477 3.62E-67 T 06-07-2017 CDO28_RS16055 a3ccde9e60e986f158c62cd23eb8bf91 481 Gene3D G3DSA:3.40.190.10 207 405 1.1E-30 T 06-07-2017 CDO28_RS16055 a3ccde9e60e986f158c62cd23eb8bf91 481 Gene3D G3DSA:3.40.190.10 68 206 2.1E-18 T 06-07-2017 CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 SUPERFAMILY SSF52540 263 484 1.38E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 SUPERFAMILY SSF52540 3 231 5.61E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 Pfam PF00005 ABC transporter 270 423 2.3E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 Pfam PF00005 ABC transporter 20 170 2.0E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 SMART SM00382 278 472 1.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 SMART SM00382 29 218 5.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 Gene3D G3DSA:3.40.50.300 2 237 7.5E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07495 eec152258b0bc82da08d6b343e6d777f 503 Gene3D G3DSA:3.40.50.300 264 492 2.6E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30105 ca29ae77e8198437632fa5bfc4b1c8f6 238 SMART SM00382 30 211 7.1E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30105 ca29ae77e8198437632fa5bfc4b1c8f6 238 Gene3D G3DSA:3.40.50.300 6 226 2.9E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30105 ca29ae77e8198437632fa5bfc4b1c8f6 238 SUPERFAMILY SSF52540 6 226 3.04E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30105 ca29ae77e8198437632fa5bfc4b1c8f6 238 Pfam PF00005 ABC transporter 21 161 4.7E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29065 0a97db5aa890e0240bda1d7c187d48b1 104 Pfam PF11154 Protein of unknown function (DUF2934) 10 44 1.4E-14 T 06-07-2017 IPR021327 Protein of unknown function DUF2934 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 31 53 4.1E-6 T 06-07-2017 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 176 4.1E-6 T 06-07-2017 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 Gene3D G3DSA:3.50.50.60 350 398 5.8E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 Gene3D G3DSA:3.50.50.60 20 120 5.8E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 Gene3D G3DSA:3.50.50.60 173 253 5.8E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 SUPERFAMILY SSF51905 360 406 3.63E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 SUPERFAMILY SSF51905 31 254 3.63E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16215 89233157fb7266489005d2c8d270f23a 429 Pfam PF01266 FAD dependent oxidoreductase 32 386 2.2E-46 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Gene3D G3DSA:1.10.10.10 1 81 1.9E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Pfam PF03466 LysR substrate binding domain 95 297 2.6E-8 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 SUPERFAMILY SSF53850 91 297 1.52E-42 T 06-07-2017 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Gene3D G3DSA:3.40.190.10 172 267 3.5E-22 T 06-07-2017 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 SUPERFAMILY SSF46785 2 80 2.45E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.4E-14 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Gene3D G3DSA:3.40.190.10 273 301 1.2E-23 T 06-07-2017 CDO28_RS22730 4d5490e40affb7c2c68da3c538490441 308 Gene3D G3DSA:3.40.190.10 91 171 1.2E-23 T 06-07-2017 CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 SUPERFAMILY SSF52540 269 503 6.61E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 Gene3D G3DSA:3.40.50.300 291 507 1.5E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 Gene3D G3DSA:3.40.50.300 27 252 5.8E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 SUPERFAMILY SSF52540 28 251 1.89E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 Pfam PF00005 ABC transporter 293 446 1.2E-14 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 Pfam PF00005 ABC transporter 45 194 9.5E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 ProSitePatterns PS00211 ABC transporters family signature. 419 433 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 SMART SM00382 301 495 0.36 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10535 48d1e461b5b87df01bc36a9f8c161b8f 517 SMART SM00382 54 242 7.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33120 52951679a303c5cd9299c8f942120505 309 Hamap MF_00697 UPF0276 protein . 27 301 47.357 T 06-07-2017 IPR007801 Uncharacterised protein family UPF0276 CDO28_RS33120 52951679a303c5cd9299c8f942120505 309 Gene3D G3DSA:3.20.20.150 27 297 1.3E-97 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS33120 52951679a303c5cd9299c8f942120505 309 SUPERFAMILY SSF51658 64 234 1.4E-6 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS33120 52951679a303c5cd9299c8f942120505 309 Pfam PF05114 Protein of unknown function (DUF692) 27 292 3.2E-101 T 06-07-2017 IPR007801 Uncharacterised protein family UPF0276 CDO28_RS02355 1346a3181bff92d84b86692e21fd7e64 96 SMART SM00418 5 95 2.0E-16 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS02355 1346a3181bff92d84b86692e21fd7e64 96 SUPERFAMILY SSF46785 4 93 1.12E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02355 1346a3181bff92d84b86692e21fd7e64 96 Gene3D G3DSA:1.10.10.10 3 94 8.8E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02355 1346a3181bff92d84b86692e21fd7e64 96 Pfam PF12840 Helix-turn-helix domain 4 75 1.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 203 1.3E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 219 231 1.3E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 219 1.3E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 SMART SM00421 186 243 2.6E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 ProSitePatterns PS00622 LuxR-type HTH domain signature. 203 230 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 SUPERFAMILY SSF46894 184 242 1.7E-15 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 SUPERFAMILY SSF52172 38 159 1.12E-8 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 240 5.9E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 Gene3D G3DSA:1.10.10.10 188 241 5.3E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33640 96b72c9350d2105294c67fd6ca99e316 262 Gene3D G3DSA:3.40.50.2300 38 164 8.6E-5 T 06-07-2017 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 Gene3D G3DSA:1.10.287.950 266 459 6.6E-41 T 06-07-2017 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 312 490 4.2E-40 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 Pfam PF11563 Protoglobin 15 178 7.7E-34 T 06-07-2017 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 265 294 3.1E-25 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 342 369 3.1E-25 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 371 400 3.1E-25 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 SUPERFAMILY SSF58104 211 492 6.8E-51 T 06-07-2017 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 SUPERFAMILY SSF46458 17 170 9.06E-22 T 06-07-2017 IPR009050 Globin-like CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 Gene3D G3DSA:1.10.490.10 15 171 1.9E-24 T 06-07-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CDO28_RS07470 c356fce87db00ff00172ed7f88f19fdf 533 SMART SM00283 244 491 1.6E-73 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS24690 2318bc596186a9896bf5a81b055b7409 364 Gene3D G3DSA:3.40.50.2300 141 297 4.0E-38 T 06-07-2017 CDO28_RS24690 2318bc596186a9896bf5a81b055b7409 364 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 27 2.5E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS24690 2318bc596186a9896bf5a81b055b7409 364 Pfam PF02608 Basic membrane protein 36 305 8.8E-42 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS24690 2318bc596186a9896bf5a81b055b7409 364 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 25 4.6E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS25315 90ce80950512ed524d6f55623d7ecddb 231 Gene3D G3DSA:3.40.50.150 3 199 1.5E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS25315 90ce80950512ed524d6f55623d7ecddb 231 Pfam PF08241 Methyltransferase domain 44 137 1.6E-21 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS25315 90ce80950512ed524d6f55623d7ecddb 231 SUPERFAMILY SSF53335 3 230 1.51E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 SUPERFAMILY SSF52540 9 208 6.22E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 215 4.6E-59 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 Gene3D G3DSA:3.30.1220.10 244 353 1.7E-27 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 Gene3D G3DSA:3.40.50.300 9 232 6.9E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 SUPERFAMILY SSF90002 261 352 6.67E-20 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 SMART SM00833 261 354 3.0E-4 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 9 349 1.4E-180 T 06-07-2017 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 CDO28_RS17575 a0b8049510fd3c9ab6bdea43c959ddca 354 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 261 352 1.1E-16 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS00500 ac6a2c776fd7ed7d6a2ed59987d08d69 334 Gene3D G3DSA:3.60.70.12 1 322 1.4E-89 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS00500 ac6a2c776fd7ed7d6a2ed59987d08d69 334 SUPERFAMILY SSF56266 3 323 3.66E-76 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS00500 ac6a2c776fd7ed7d6a2ed59987d08d69 334 Pfam PF03576 Peptidase family S58 7 321 7.7E-68 T 06-07-2017 IPR005321 Peptidase S58, DmpA CDO28_RS15385 58874d0f7310f67f16f3cfa702c16272 937 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 8 86 1.8E-25 T 06-07-2017 IPR011933 Double transmembrane domain CDO28_RS15385 58874d0f7310f67f16f3cfa702c16272 937 SUPERFAMILY SSF52317 365 522 1.03E-9 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15385 58874d0f7310f67f16f3cfa702c16272 937 Pfam PF07584 Aerotolerance regulator N-terminal 8 81 5.9E-18 T 06-07-2017 IPR024163 Aerotolerance regulator, N-terminal CDO28_RS15385 58874d0f7310f67f16f3cfa702c16272 937 Pfam PF13709 Domain of unknown function (DUF4159) 698 917 3.0E-56 T 06-07-2017 IPR025297 Domain of unknown function DUF4159 CDO28_RS08140 871a3aa34bfe0958858b90e83f4c6a51 142 Pfam PF05025 RbsD / FucU transport protein family 3 140 1.5E-32 T 06-07-2017 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS08140 871a3aa34bfe0958858b90e83f4c6a51 142 SUPERFAMILY SSF102546 1 141 2.49E-37 T 06-07-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS08140 871a3aa34bfe0958858b90e83f4c6a51 142 Gene3D G3DSA:3.40.1650.10 2 141 1.5E-43 T 06-07-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 SUPERFAMILY SSF63380 97 199 2.47E-29 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 Pfam PF00677 Lumazine binding domain 3 90 1.0E-17 T 06-07-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 Pfam PF00677 Lumazine binding domain 104 188 6.3E-18 T 06-07-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 SUPERFAMILY SSF63380 1 97 6.38E-21 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 Gene3D G3DSA:2.40.30.20 109 199 2.6E-28 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 Gene3D G3DSA:2.40.30.20 5 108 4.9E-27 T 06-07-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 4.4E-51 T 06-07-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04435 417feb3780075dfa19480ff412caafad 206 PIRSF PIRSF000498 1 206 7.1E-71 T 06-07-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 22 416 4.5E-132 T 06-07-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 PIRSF PIRSF000151 7 427 1.2E-166 T 06-07-2017 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 Gene3D G3DSA:3.40.309.10 237 384 1.7E-32 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 Pfam PF00171 Aldehyde dehydrogenase family 20 291 3.7E-16 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 SUPERFAMILY SSF53720 15 426 1.19E-112 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 Gene3D G3DSA:3.40.605.10 5 234 1.3E-97 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 Gene3D G3DSA:3.40.605.10 385 426 1.3E-97 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 333 355 - T 06-07-2017 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS11545 0f72fb50adc888d98a2038e7681cc655 427 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 14 426 39.847 T 06-07-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Gene3D G3DSA:3.30.1330.90 320 447 5.9E-40 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 SUPERFAMILY SSF143548 321 449 1.7E-34 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 146 173 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 283 3.8E-62 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Gene3D G3DSA:3.40.50.720 2 109 4.2E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 SUPERFAMILY SSF55021 453 524 3.87E-15 T 06-07-2017 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 315 1.2E-37 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 SUPERFAMILY SSF51735 100 284 4.5E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Gene3D G3DSA:3.40.50.720 110 285 3.4E-69 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 SUPERFAMILY SSF52283 3 129 4.35E-39 T 06-07-2017 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 Gene3D G3DSA:3.30.70.260 448 524 5.9E-17 T 06-07-2017 CDO28_RS13470 d5fe9aa04497120808cbb559b70af907 531 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 4 524 6.7E-202 T 06-07-2017 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 3.0E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 3.0E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 Gene3D G3DSA:1.10.10.60 188 244 5.3E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 Pfam PF12833 Helix-turn-helix domain 212 290 2.7E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 SUPERFAMILY SSF46689 190 240 5.82E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 SUPERFAMILY SSF46689 243 292 5.38E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 Gene3D G3DSA:1.10.10.60 245 292 3.7E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16150 75e6116259b4c48a9ed60c98e4b9e7fd 294 SMART SM00342 206 289 2.3E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS15985 7ce12de00850c036cc1c4c9b1fac23b3 260 Gene3D G3DSA:3.90.226.10 5 193 6.9E-56 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS15985 7ce12de00850c036cc1c4c9b1fac23b3 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 259 6.4E-59 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS15985 7ce12de00850c036cc1c4c9b1fac23b3 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 06-07-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 CDO28_RS15985 7ce12de00850c036cc1c4c9b1fac23b3 260 Gene3D G3DSA:1.10.12.10 198 260 1.2E-20 T 06-07-2017 IPR014748 Crontonase, C-terminal CDO28_RS15985 7ce12de00850c036cc1c4c9b1fac23b3 260 SUPERFAMILY SSF52096 2 260 1.41E-71 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 PIRSF PIRSF001455 16 375 2.8E-100 T 06-07-2017 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 Gene3D G3DSA:3.40.50.1970 12 182 3.7E-62 T 06-07-2017 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 11 373 40.617 T 06-07-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 22 369 4.6E-107 T 06-07-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 Gene3D G3DSA:1.20.1090.10 183 371 3.9E-69 T 06-07-2017 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 Pfam PF01761 3-dehydroquinate synthase 77 340 1.5E-98 T 06-07-2017 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDO28_RS13745 4b2773541ef9c74e0f28c4c5889609c9 377 SUPERFAMILY SSF56796 14 371 3.01E-109 T 06-07-2017 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 15 39 2.9E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 15 192 2.8E-74 T 06-07-2017 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 Gene3D G3DSA:2.102.10.10 53 190 4.3E-37 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 SUPERFAMILY SSF50022 36 189 1.7E-38 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 7 46 6.4E-22 T 06-07-2017 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 Pfam PF00355 Rieske [2Fe-2S] domain 125 178 9.0E-12 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 Gene3D G3DSA:1.20.5.510 7 46 5.9E-24 T 06-07-2017 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 130 141 1.5E-16 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 164 176 1.5E-16 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS00165 55ea76b0feae4a2664ccbce07110ef12 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 152 164 1.5E-16 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 SUPERFAMILY SSF46785 2 96 2.2E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 Gene3D G3DSA:3.30.70.920 60 144 1.0E-26 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 Pfam PF13404 AsnC-type helix-turn-helix domain 7 48 1.6E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 Gene3D G3DSA:1.10.10.10 3 55 6.6E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 SUPERFAMILY SSF54909 69 156 5.09E-20 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.5E-10 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.5E-10 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.5E-10 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 1.8E-21 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS30685 8959e6ef3edff3b0c44907dc3e2aab31 156 SMART SM00344 7 116 3.8E-32 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS14585 079dc5abec5c31b574bf40031742d7f3 232 Gene3D G3DSA:1.20.120.80 47 216 4.2E-37 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14585 079dc5abec5c31b574bf40031742d7f3 232 SUPERFAMILY SSF81452 2 218 6.02E-42 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14585 079dc5abec5c31b574bf40031742d7f3 232 Pfam PF00510 Cytochrome c oxidase subunit III 87 220 7.8E-16 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS12490 7af16d8ea0497b1221fe2e1f9c3373ef 210 Gene3D G3DSA:3.40.50.10230 4 206 3.2E-79 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 CDO28_RS12490 7af16d8ea0497b1221fe2e1f9c3373ef 210 SUPERFAMILY SSF63965 4 207 2.35E-74 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 CDO28_RS12490 7af16d8ea0497b1221fe2e1f9c3373ef 210 Pfam PF02570 Precorrin-8X methylmutase 13 207 2.5E-71 T 06-07-2017 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 16 563 4.5E-112 T 06-07-2017 IPR005674 CocE/Serine esterase GO:0016787 CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 SMART SM00939 321 559 2.1E-52 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Gene3D G3DSA:3.40.50.1820 12 152 2.1E-75 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Gene3D G3DSA:3.40.50.1820 240 350 2.1E-75 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Gene3D G3DSA:1.10.3020.10 153 230 1.2E-5 T 06-07-2017 CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 335 558 8.1E-29 T 06-07-2017 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 SUPERFAMILY SSF53474 7 354 4.79E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 SUPERFAMILY SSF49785 348 563 1.76E-57 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Gene3D G3DSA:2.60.120.260 351 565 2.1E-59 T 06-07-2017 IPR008979 Galactose-binding domain-like CDO28_RS28970 7ccd9d5326a0393cf7ba7f9f8bd0c1da 578 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 20 297 2.7E-71 T 06-07-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 177 2.5E-24 T 06-07-2017 IPR005225 Small GTP-binding protein domain GO:0005525 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 SUPERFAMILY SSF52540 20 213 5.96E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 Pfam PF07650 KH domain 217 293 1.6E-19 T 06-07-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 Gene3D G3DSA:3.40.50.300 14 183 1.9E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 Pfam PF01926 50S ribosome-binding GTPase 20 134 1.7E-23 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 SUPERFAMILY SSF54814 190 306 8.5E-41 T 06-07-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 Gene3D G3DSA:3.30.300.20 197 301 1.0E-38 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 Hamap MF_00367 GTPase Era [era]. 15 305 34.159 T 06-07-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 CDO28_RS05145 c1d0cc632f62350f6348acc1046d2c34 309 TIGRFAM TIGR00436 era: GTP-binding protein Era 18 288 2.0E-76 T 06-07-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 CDO28_RS29875 aca62fa8c7a305efae5dda4ac7e56f33 298 SUPERFAMILY SSF103481 217 297 3.01E-12 T 06-07-2017 CDO28_RS29875 aca62fa8c7a305efae5dda4ac7e56f33 298 SUPERFAMILY SSF103481 51 152 1.31E-12 T 06-07-2017 CDO28_RS29875 aca62fa8c7a305efae5dda4ac7e56f33 298 Pfam PF00892 EamA-like transporter family 161 296 2.2E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS29875 aca62fa8c7a305efae5dda4ac7e56f33 298 Pfam PF00892 EamA-like transporter family 18 150 3.2E-15 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS26665 cd54401cd03ed09d2dc385f3a0caa49f 236 SUPERFAMILY SSF53271 27 202 2.84E-18 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS26665 cd54401cd03ed09d2dc385f3a0caa49f 236 Gene3D G3DSA:3.40.50.2020 64 197 2.1E-21 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS26665 cd54401cd03ed09d2dc385f3a0caa49f 236 Pfam PF00156 Phosphoribosyl transferase domain 65 202 5.0E-15 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 Gene3D G3DSA:1.10.287.610 102 153 1.6E-20 T 06-07-2017 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 SUPERFAMILY SSF52313 8 231 4.71E-91 T 06-07-2017 IPR023591 Ribosomal protein S2, flavodoxin-like domain CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 235 41.177 T 06-07-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 159 183 - T 06-07-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 39 48 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 89 106 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 176 187 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 197 211 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 8 26 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 PRINTS PR00395 Ribosomal protein S2 signature 159 176 6.9E-38 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 06-07-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 Pfam PF00318 Ribosomal protein S2 11 225 3.8E-95 T 06-07-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 Gene3D G3DSA:3.40.50.10490 25 101 4.6E-65 T 06-07-2017 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 Gene3D G3DSA:3.40.50.10490 159 242 4.6E-65 T 06-07-2017 CDO28_RS02895 65982a1e4e93437990a5d28bb075ab55 255 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 225 4.8E-100 T 06-07-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 CDO28_RS34255 a377cab87ba209290898097b9084d8a7 253 SUPERFAMILY SSF53955 84 205 2.85E-37 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS34255 a377cab87ba209290898097b9084d8a7 253 Gene3D G3DSA:1.10.530.10 84 205 2.7E-37 T 06-07-2017 CDO28_RS34255 a377cab87ba209290898097b9084d8a7 253 Pfam PF01464 Transglycosylase SLT domain 93 184 8.5E-21 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 4.9E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 4.9E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 SUPERFAMILY SSF48498 91 180 1.7E-17 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 Gene3D G3DSA:1.10.357.10 5 196 1.9E-37 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 SUPERFAMILY SSF46689 7 73 2.34E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 64 1.1E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25480 613b02fd709997c7bd0ea3efc9f45679 203 Pfam PF13305 WHG domain 94 175 7.8E-18 T 06-07-2017 IPR025996 WHG domain CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 06-07-2017 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 06-07-2017 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 183 1.4E-56 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 SUPERFAMILY SSF53178 1 183 9.02E-67 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 Gene3D G3DSA:3.40.50.1470 1 183 2.9E-68 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 Pfam PF01195 Peptidyl-tRNA hydrolase 3 182 1.8E-53 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDO28_RS15445 d7f06eab06fb2e0e611446011bba4e25 239 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 34.574 T 06-07-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDO28_RS32320 df8506d036ffb0e39f243aafbbccc273 275 Gene3D G3DSA:3.40.50.720 1 172 1.6E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32320 df8506d036ffb0e39f243aafbbccc273 275 Pfam PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term 121 275 9.9E-76 T 06-07-2017 IPR031663 Phosphogluconate dehydrogenase (decarboxylating) , C-terminal CDO28_RS32320 df8506d036ffb0e39f243aafbbccc273 275 Gene3D G3DSA:1.10.3640.10 175 275 3.4E-49 T 06-07-2017 CDO28_RS32320 df8506d036ffb0e39f243aafbbccc273 275 SUPERFAMILY SSF51735 4 166 4.95E-15 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32320 df8506d036ffb0e39f243aafbbccc273 275 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 89 2.9E-7 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 SUPERFAMILY SSF52317 170 392 3.82E-62 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 14 145 6.7E-45 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 SUPERFAMILY SSF52021 13 159 3.27E-49 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 Pfam PF00117 Glutamine amidotransferase class-I 211 387 1.2E-46 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 SMART SM01097 12 146 7.2E-76 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00097 Anthranilate synthase component II signature 364 377 2.5E-6 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00097 Anthranilate synthase component II signature 250 259 2.5E-6 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00097 Anthranilate synthase component II signature 279 290 2.5E-6 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 14 390 1.8E-126 T 06-07-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 250 259 7.3E-12 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 279 290 7.3E-12 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 364 377 7.3E-12 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 Gene3D G3DSA:3.40.50.880 169 391 1.3E-78 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 279 295 1.2E-36 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 208 222 1.2E-36 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 247 261 1.2E-36 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 321 332 1.2E-36 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 296 313 1.2E-36 T 06-07-2017 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 12 393 46.177 T 06-07-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS15620 9ec635059b37bd896218c7c11a1e1185 401 Gene3D G3DSA:3.50.30.20 14 160 4.7E-52 T 06-07-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 SMART SM00478 51 200 4.4E-49 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 ProSitePatterns PS01155 Endonuclease III family signature. 114 143 - T 06-07-2017 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 202 218 - T 06-07-2017 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 SUPERFAMILY SSF48150 12 232 1.88E-72 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Gene3D G3DSA:1.10.340.30 40 134 2.7E-41 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 14 275 1.4E-92 T 06-07-2017 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Pfam PF14815 NUDIX domain 245 356 2.2E-22 T 06-07-2017 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Gene3D G3DSA:3.90.79.10 244 358 1.2E-16 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Pfam PF00633 Helix-hairpin-helix motif 112 140 3.1E-7 T 06-07-2017 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Gene3D G3DSA:1.10.1670.10 135 233 2.5E-39 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 SUPERFAMILY SSF55811 230 358 2.23E-21 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS05925 efd4a7cb834973a8969af7a0fed15051 366 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 48 168 2.4E-18 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 Gene3D G3DSA:3.30.70.360 182 277 1.4E-22 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 99 136 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 Pfam PF07687 Peptidase dimerisation domain 170 276 7.1E-20 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 SUPERFAMILY SSF53187 295 368 4.29E-57 T 06-07-2017 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 SUPERFAMILY SSF53187 4 172 4.29E-57 T 06-07-2017 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 Gene3D G3DSA:3.40.630.10 3 181 1.4E-63 T 06-07-2017 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 Gene3D G3DSA:3.40.630.10 314 368 1.4E-63 T 06-07-2017 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 SUPERFAMILY SSF55031 173 278 1.79E-20 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 5 368 2.1E-169 T 06-07-2017 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 CDO28_RS25625 9e449e87cf6a67ee5a6f9032a9736ab9 374 Pfam PF01546 Peptidase family M20/M25/M40 66 367 6.1E-38 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82693 39 133 6.02E-25 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:3.30.70.1430 39 140 3.6E-30 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Pfam PF00873 AcrB/AcrD/AcrF family 2 1027 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:3.30.70.1430 567 670 3.4E-29 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82714 184 273 1.96E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:1.20.1640.10 295 507 8.1E-59 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82866 298 500 5.62E-49 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:1.10.3850.10 813 1026 7.7E-51 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82714 722 806 1.57E-19 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:3.30.2090.10 722 806 5.2E-22 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82693 565 671 2.62E-26 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 Gene3D G3DSA:3.30.2090.10 183 274 4.9E-26 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82866 805 1027 5.23E-41 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 3.5E-91 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82693 137 183 1.22E-24 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 SUPERFAMILY SSF82693 276 332 1.22E-24 T 06-07-2017 CDO28_RS29380 39cb22f7022e4bc4976479baf9e9038f 1070 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1029 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 SUPERFAMILY SSF63737 4 200 3.4E-44 T 06-07-2017 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 Pfam PF01433 Peptidase family M1 16 391 3.6E-68 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 Gene3D G3DSA:1.25.50.10 556 881 2.4E-98 T 06-07-2017 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 Pfam PF11940 Domain of unknown function (DUF3458) 466 837 1.9E-119 T 06-07-2017 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 14 879 0.0 T 06-07-2017 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 Gene3D G3DSA:1.10.390.10 315 457 1.7E-31 T 06-07-2017 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 SUPERFAMILY SSF55486 211 457 4.88E-76 T 06-07-2017 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 8.2E-8 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 8.2E-8 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 8.2E-8 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDO28_RS05390 24d810cb59922b8767f5779be337180a 884 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 8.2E-8 T 06-07-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 Gene3D G3DSA:1.10.530.10 526 670 5.5E-41 T 06-07-2017 CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 Gene3D G3DSA:1.25.20.10 62 420 3.7E-26 T 06-07-2017 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 532 560 - T 06-07-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 Pfam PF01464 Transglycosylase SLT domain 526 625 1.1E-20 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 SUPERFAMILY SSF53955 526 672 5.98E-40 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS05220 5d6ef936c7b1b1e2c656a0e3b6ff5085 681 SUPERFAMILY SSF48435 59 498 8.63E-63 T 06-07-2017 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 292 399 5.2E-11 T 06-07-2017 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 SUPERFAMILY SSF56524 49 280 6.67E-49 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 235 248 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 329 341 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 374 386 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 78 94 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 133 144 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 251 264 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 PRINTS PR00407 Eukaryotic molybdopterin domain signature 218 234 2.4E-20 T 06-07-2017 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 Gene3D G3DSA:2.60.40.650 295 405 9.9E-26 T 06-07-2017 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 Gene3D G3DSA:3.90.420.10 54 281 1.3E-54 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 Pfam PF00174 Oxidoreductase molybdopterin binding domain 101 269 2.1E-38 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS12955 c9635c8f4216222dbf75bde712be35ed 409 SUPERFAMILY SSF81296 295 405 5.46E-26 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 Gene3D G3DSA:3.30.930.10 19 344 1.3E-65 T 06-07-2017 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 SUPERFAMILY SSF55681 16 345 7.67E-69 T 06-07-2017 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 22 342 2.6E-113 T 06-07-2017 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 35 45 1.3E-6 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 232 248 1.3E-6 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 102 119 1.3E-6 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 84 97 1.3E-6 T 06-07-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDO28_RS09175 784dac7eb6986533e877ab6a5ee39638 350 Pfam PF00152 tRNA synthetases class II (D, K and N) 19 342 8.2E-32 T 06-07-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS03065 c1563bfb0855b3ab2c907765c1915fe1 80 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 3.0E-32 T 06-07-2017 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CDO28_RS03065 c1563bfb0855b3ab2c907765c1915fe1 80 SUPERFAMILY SSF50182 7 66 4.25E-24 T 06-07-2017 IPR010920 LSM domain CDO28_RS03065 c1563bfb0855b3ab2c907765c1915fe1 80 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 29.112 T 06-07-2017 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CDO28_RS03065 c1563bfb0855b3ab2c907765c1915fe1 80 Gene3D G3DSA:2.30.30.100 3 77 1.7E-35 T 06-07-2017 CDO28_RS29400 c95217ae5c251b7fea508a46689550d2 389 Pfam PF00534 Glycosyl transferases group 1 213 354 3.0E-21 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS29400 c95217ae5c251b7fea508a46689550d2 389 Pfam PF13579 Glycosyl transferase 4-like domain 37 193 9.2E-21 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS29400 c95217ae5c251b7fea508a46689550d2 389 SUPERFAMILY SSF53756 31 387 6.67E-67 T 06-07-2017 CDO28_RS29400 c95217ae5c251b7fea508a46689550d2 389 Gene3D G3DSA:3.40.50.2000 208 323 2.6E-16 T 06-07-2017 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 SUPERFAMILY SSF81330 11 135 2.88E-32 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 4.8E-10 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 99 108 4.8E-10 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 90 98 4.8E-10 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 142 23.631 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 140 1.4E-35 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 06-07-2017 IPR019823 Large-conductance mechanosensitive channel, conserved site CDO28_RS07805 55b35b1b0d80bc76129fec2162e8e77f 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 138 1.4E-42 T 06-07-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CDO28_RS20070 a162d182915f18fad8f163092cf23972 395 Gene3D G3DSA:1.10.260.40 9 77 7.2E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20070 a162d182915f18fad8f163092cf23972 395 SUPERFAMILY SSF47413 7 75 3.94E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20070 a162d182915f18fad8f163092cf23972 395 SMART SM00530 8 70 6.4E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS20070 a162d182915f18fad8f163092cf23972 395 Pfam PF13560 Helix-turn-helix domain 9 64 5.2E-7 T 06-07-2017 CDO28_RS20070 a162d182915f18fad8f163092cf23972 395 Pfam PF06114 Domain of unknown function (DUF955) 210 306 5.2E-10 T 06-07-2017 IPR010359 HTH domain, IrrE-type CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 PIRSF PIRSF004930 1 324 1.9E-96 T 06-07-2017 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 Pfam PF01300 Telomere recombination 21 196 5.0E-51 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 Gene3D G3DSA:3.90.870.10 8 204 9.2E-68 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 205 4.3E-48 T 06-07-2017 IPR006070 YrdC-like domain GO:0003725 CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 SUPERFAMILY SSF55821 12 206 7.32E-58 T 06-07-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain CDO28_RS06245 70711b4b57cc6e840384e111e408f4fc 324 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 321 9.2E-17 T 06-07-2017 IPR005145 Putative GTP-binding controlling metal-binding domain CDO28_RS15055 5ad12d06dca6acf38445f325af1730ba 262 SUPERFAMILY SSF52540 6 223 5.44E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15055 5ad12d06dca6acf38445f325af1730ba 262 Gene3D G3DSA:3.40.50.300 3 239 7.4E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15055 5ad12d06dca6acf38445f325af1730ba 262 Pfam PF00005 ABC transporter 17 169 4.3E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15055 5ad12d06dca6acf38445f325af1730ba 262 SMART SM00382 26 218 1.3E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15055 5ad12d06dca6acf38445f325af1730ba 262 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04545 02eb52c2fec4a5993badace2b372c5ed 363 Gene3D G3DSA:3.30.70.1230 154 333 7.4E-26 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS04545 02eb52c2fec4a5993badace2b372c5ed 363 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 158 329 1.7E-17 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS04545 02eb52c2fec4a5993badace2b372c5ed 363 SUPERFAMILY SSF55073 148 334 9.73E-42 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS04545 02eb52c2fec4a5993badace2b372c5ed 363 SMART SM00044 131 315 7.0E-5 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 100 1.5E-26 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 170 358 5.7E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 192 5.2E-8 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 283 292 5.2E-8 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Gene3D G3DSA:3.30.1360.120 596 654 1.5E-35 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Gene3D G3DSA:3.30.1360.120 747 845 1.5E-35 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 SUPERFAMILY SSF101790 886 985 9.65E-17 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 3 987 0.0 T 06-07-2017 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Gene3D G3DSA:2.40.30.110 891 987 7.9E-18 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 PIRSF PIRSF037980 1 987 0.0 T 06-07-2017 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 298 5.3E-7 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 190 5.3E-7 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Pfam PF01571 Aminomethyltransferase folate-binding domain 600 865 8.5E-66 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 SUPERFAMILY SSF103025 594 883 3.14E-86 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 874 959 1.2E-13 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 SUPERFAMILY SSF51905 159 470 3.89E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Gene3D G3DSA:3.30.70.1400 655 730 1.3E-21 T 06-07-2017 CDO28_RS10185 1d2f588e98dd13fc2abfe7ae3ff4fa72 987 Gene3D G3DSA:3.50.50.60 162 467 4.3E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS29600 796383756d391046413756fbcf339e15 355 Gene3D G3DSA:2.40.50.140 283 338 7.3E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS29600 796383756d391046413756fbcf339e15 355 Gene3D G3DSA:3.40.50.300 5 234 5.5E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29600 796383756d391046413756fbcf339e15 355 SUPERFAMILY SSF52540 5 242 5.46E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29600 796383756d391046413756fbcf339e15 355 Pfam PF03459 TOBE domain 289 344 5.2E-10 T 06-07-2017 IPR005116 Transport-associated OB, type 1 CDO28_RS29600 796383756d391046413756fbcf339e15 355 Gene3D G3DSA:2.40.50.100 339 353 3.1E-6 T 06-07-2017 CDO28_RS29600 796383756d391046413756fbcf339e15 355 Gene3D G3DSA:2.40.50.100 239 282 3.1E-6 T 06-07-2017 CDO28_RS29600 796383756d391046413756fbcf339e15 355 Pfam PF00005 ABC transporter 20 161 2.3E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29600 796383756d391046413756fbcf339e15 355 SUPERFAMILY SSF50331 236 353 1.15E-28 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS29600 796383756d391046413756fbcf339e15 355 SMART SM00382 28 212 4.5E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29600 796383756d391046413756fbcf339e15 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 SUPERFAMILY SSF52096 4 315 3.85E-97 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 2.7E-57 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 1.7E-38 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 5.0E-125 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 Gene3D G3DSA:3.90.226.10 57 300 1.3E-48 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS13715 d9c500a53c14d3232a91ef59f4813cff 317 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 47.787 T 06-07-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS15790 a54dc0c902dace34e9f80cf12c38e460 133 SUPERFAMILY SSF55729 3 123 5.15E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15790 a54dc0c902dace34e9f80cf12c38e460 133 Gene3D G3DSA:3.40.630.30 8 118 4.6E-16 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15790 a54dc0c902dace34e9f80cf12c38e460 133 Pfam PF00583 Acetyltransferase (GNAT) family 39 114 8.8E-9 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS21365 7beb3f97d6db8a374f0bce48ed939bf3 140 Gene3D G3DSA:3.10.50.30 54 132 2.3E-22 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS21365 7beb3f97d6db8a374f0bce48ed939bf3 140 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 57 131 5.1E-17 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS21365 7beb3f97d6db8a374f0bce48ed939bf3 140 SUPERFAMILY SSF54534 56 130 3.27E-16 T 06-07-2017 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 SUPERFAMILY SSF51430 15 258 1.24E-69 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PRINTS PR00069 Aldo-keto reductase signature 192 216 4.1E-39 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PRINTS PR00069 Aldo-keto reductase signature 121 138 4.1E-39 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PRINTS PR00069 Aldo-keto reductase signature 155 184 4.1E-39 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PRINTS PR00069 Aldo-keto reductase signature 90 108 4.1E-39 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PRINTS PR00069 Aldo-keto reductase signature 34 58 4.1E-39 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 Gene3D G3DSA:3.20.20.100 16 258 5.8E-76 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 121 138 - T 06-07-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 PIRSF PIRSF000097 12 274 1.7E-48 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24435 ee6f932c87e40d8509daec3f9f485d75 277 Pfam PF00248 Aldo/keto reductase family 25 257 4.9E-41 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 Pfam PF00990 Diguanylate cyclase, GGDEF domain 132 288 3.0E-40 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 SUPERFAMILY SSF55073 136 290 1.57E-43 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 SMART SM00267 120 292 1.5E-47 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 Gene3D G3DSA:3.30.450.20 5 112 1.6E-6 T 06-07-2017 CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 Gene3D G3DSA:3.30.70.270 133 290 3.3E-46 T 06-07-2017 CDO28_RS13120 d91c9ca26bda96079012a1889bf85475 307 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 130 290 4.3E-41 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 PIRSF PIRSF001237 1 347 2.6E-135 T 06-07-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 SUPERFAMILY SSF51556 1 344 5.53E-138 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 Hamap MF_00219 Dihydroorotase [pyrC]. 2 345 43.578 T 06-07-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 Pfam PF01979 Amidohydrolase family 11 310 4.0E-15 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 06-07-2017 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 06-07-2017 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 Gene3D G3DSA:3.20.20.140 2 344 7.9E-124 T 06-07-2017 CDO28_RS08110 ccfef4ba39694a071492aceced4d028c 347 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 319 2.2E-124 T 06-07-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 Gene3D G3DSA:3.40.190.10 91 172 1.8E-15 T 06-07-2017 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 283 2.1E-123 T 06-07-2017 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.9E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.5E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 Pfam PF03466 LysR substrate binding domain 89 285 3.5E-40 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 Gene3D G3DSA:1.10.10.10 1 80 2.6E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 Gene3D G3DSA:3.40.190.10 173 254 3.9E-22 T 06-07-2017 CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 SUPERFAMILY SSF46785 2 105 2.58E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27605 7ffac3aa547a9b8dfaceaf36132da78f 289 SUPERFAMILY SSF53850 90 288 7.21E-37 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.3E-68 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 SUPERFAMILY SSF55424 343 463 3.61E-36 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 SUPERFAMILY SSF51905 3 336 2.29E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 Gene3D G3DSA:3.50.50.60 5 143 3.9E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 Gene3D G3DSA:3.50.50.60 144 332 4.3E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PIRSF PIRSF000350 2 459 1.5E-84 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 Gene3D G3DSA:3.30.390.30 333 462 1.1E-42 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 464 7.9E-151 T 06-07-2017 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.1E-39 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 5.1E-39 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 5.1E-39 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 5.1E-39 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 5.1E-39 T 06-07-2017 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 454 4.8E-33 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS12425 fe6c56442ee727ff66134dd8441fd3c5 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 9.8E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Gene3D G3DSA:3.30.450.40 269 439 3.7E-29 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00065 291 435 3.8E-8 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00086 98 140 250.0 T 06-07-2017 IPR001610 PAC motif CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00086 663 704 0.017 T 06-07-2017 IPR001610 PAC motif CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00086 220 262 1.5E-5 T 06-07-2017 IPR001610 PAC motif CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00086 535 577 0.27 T 06-07-2017 IPR001610 PAC motif CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SUPERFAMILY SSF55785 143 260 1.74E-27 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00091 21 91 5.6E-4 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00091 148 214 3.4E-12 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00091 589 657 2.0 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SMART SM00911 717 799 5.2E-29 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Gene3D G3DSA:3.30.450.20 440 566 1.3E-16 T 06-07-2017 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SUPERFAMILY SSF55785 458 575 7.85E-12 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SUPERFAMILY SSF55781 293 438 5.89E-21 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 525 584 8.3E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 639 710 2.5E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 269 1.5E-31 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 145 2.1E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SUPERFAMILY SSF55785 574 702 6.98E-22 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF13426 PAS domain 37 138 1.4E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF07536 HWE histidine kinase 717 798 1.8E-25 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Gene3D G3DSA:3.30.450.20 23 137 4.8E-14 T 06-07-2017 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Gene3D G3DSA:3.30.450.20 567 720 1.4E-30 T 06-07-2017 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF13185 GAF domain 290 426 1.0E-11 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF00989 PAS fold 150 259 2.7E-21 T 06-07-2017 IPR013767 PAS fold GO:0006355 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF08448 PAS fold 460 579 5.8E-11 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Gene3D G3DSA:3.30.450.20 150 268 1.1E-28 T 06-07-2017 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 Pfam PF08447 PAS fold 612 697 4.3E-12 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS28025 930a637d7ce10df8bb60953d661ecca4 907 SUPERFAMILY SSF55785 23 132 5.93E-15 T 06-07-2017 IPR000014 PAS domain CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 TIGRFAM TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated 9 525 9.6E-224 T 06-07-2017 IPR017529 Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Gene3D G3DSA:3.40.50.980 184 343 9.7E-34 T 06-07-2017 CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Gene3D G3DSA:2.30.38.10 344 427 6.6E-20 T 06-07-2017 CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Gene3D G3DSA:3.30.300.30 429 528 4.9E-24 T 06-07-2017 CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Pfam PF00501 AMP-binding enzyme 20 434 3.1E-92 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Pfam PF13193 AMP-binding enzyme C-terminal domain 443 518 7.5E-9 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 Gene3D G3DSA:3.40.50.980 11 183 4.7E-39 T 06-07-2017 CDO28_RS33430 e807598cbdbd96aa7ca6cf701cec8064 530 SUPERFAMILY SSF56801 8 529 1.24E-136 T 06-07-2017 CDO28_RS02815 40f6b3e6a57193c8412ed02d40915195 801 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 327 522 3.1E-16 T 06-07-2017 IPR004477 ComEC/Rec2-related protein CDO28_RS02815 40f6b3e6a57193c8412ed02d40915195 801 Pfam PF13567 Domain of unknown function (DUF4131) 92 253 3.8E-9 T 06-07-2017 IPR025405 Domain of unknown function DUF4131 CDO28_RS02815 40f6b3e6a57193c8412ed02d40915195 801 Pfam PF03772 Competence protein 305 590 3.8E-54 T 06-07-2017 IPR004477 ComEC/Rec2-related protein CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 SUPERFAMILY SSF51445 190 628 5.76E-110 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Gene3D G3DSA:3.20.20.80 247 623 2.4E-87 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 SMART SM00642 262 616 1.3E-6 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Gene3D G3DSA:2.60.40.10 124 233 2.8E-35 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Gene3D G3DSA:2.60.40.10 25 118 1.8E-12 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 119 733 1.4E-270 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 PIRSF PIRSF000463 19 736 8.2E-280 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 111 736 43.443 T 06-07-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Pfam PF00128 Alpha amylase, catalytic domain 287 359 1.4E-7 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 SUPERFAMILY SSF81296 26 123 2.2E-16 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Gene3D G3DSA:2.60.40.1180 636 734 2.5E-32 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 SUPERFAMILY SSF51011 636 734 1.13E-29 T 06-07-2017 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 SUPERFAMILY SSF81296 148 204 8.54E-10 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 134 218 5.4E-20 T 06-07-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CDO28_RS12895 9b05a2e7bbee867bf17fc676a58c2721 736 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 640 734 7.5E-23 T 06-07-2017 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 CDO28_RS28710 c49efb6fc8e5de628296c8aec9cf49d2 331 PIRSF PIRSF033905 1 331 6.0E-182 T 06-07-2017 IPR009645 Uncharacterised conserved protein GguC CDO28_RS28710 c49efb6fc8e5de628296c8aec9cf49d2 331 SUPERFAMILY SSF56529 118 317 2.13E-18 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 Gene3D G3DSA:3.30.870.10 290 479 5.9E-36 T 06-07-2017 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 Pfam PF13091 PLD-like domain 84 232 5.2E-15 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 Pfam PF13091 PLD-like domain 322 465 3.9E-21 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 SMART SM00155 173 200 0.0064 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 SMART SM00155 412 439 1.7E-4 T 06-07-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 Gene3D G3DSA:3.30.870.10 58 246 1.6E-33 T 06-07-2017 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 SUPERFAMILY SSF56024 249 496 5.16E-30 T 06-07-2017 CDO28_RS04210 0af4195881cb69012448cab8bc41164b 521 SUPERFAMILY SSF56024 61 246 6.54E-38 T 06-07-2017 CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 186 3.7E-6 T 06-07-2017 CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.6E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.6E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.6E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 Pfam PF00106 short chain dehydrogenase 3 194 3.6E-49 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.9E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.9E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.9E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.9E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 Gene3D G3DSA:3.40.50.720 4 244 1.0E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 SUPERFAMILY SSF51735 3 255 1.4E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07700 abdd4ffa392b5a95064736944a180d91 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS22210 9e949a38197d9b50b4b2333d67ba6694 312 Pfam PF01261 Xylose isomerase-like TIM barrel 31 218 1.7E-24 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS22210 9e949a38197d9b50b4b2333d67ba6694 312 Gene3D G3DSA:3.20.20.150 1 288 2.1E-76 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS22210 9e949a38197d9b50b4b2333d67ba6694 312 SUPERFAMILY SSF51658 4 289 7.05E-58 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS22210 9e949a38197d9b50b4b2333d67ba6694 312 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 3 289 6.7E-119 T 06-07-2017 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 CDO28_RS14380 329adb656d90c38a47ff298cd345a7be 286 SMART SM00849 31 225 9.4E-4 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14380 329adb656d90c38a47ff298cd345a7be 286 Pfam PF12706 Beta-lactamase superfamily domain 43 247 2.3E-23 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14380 329adb656d90c38a47ff298cd345a7be 286 SUPERFAMILY SSF56281 24 215 1.97E-22 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14380 329adb656d90c38a47ff298cd345a7be 286 Gene3D G3DSA:3.60.15.10 18 267 1.1E-53 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS18795 2311ad312f8a024afb8aa5a5b1a6fb2f 305 Pfam PF12697 Alpha/beta hydrolase family 87 278 6.2E-12 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS18795 2311ad312f8a024afb8aa5a5b1a6fb2f 305 Gene3D G3DSA:3.40.50.1820 60 292 6.6E-31 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS18795 2311ad312f8a024afb8aa5a5b1a6fb2f 305 SUPERFAMILY SSF53474 79 292 1.99E-31 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 3 298 1.9E-121 T 06-07-2017 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 Pfam PF00701 Dihydrodipicolinate synthetase family 12 298 1.0E-48 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 SUPERFAMILY SSF51569 12 297 1.36E-65 T 06-07-2017 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 Gene3D G3DSA:3.20.20.70 12 298 9.0E-73 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 SMART SM01130 10 300 1.3E-72 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 4 301 52.662 T 06-07-2017 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 CDO28_RS24520 d2a243406cf6e01d1aaa0c62fb567f98 301 PIRSF PIRSF001365 7 301 6.2E-64 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS02290 875dd6d6fcee62cbc7a2a5caf925c1c6 311 Pfam PF04228 Putative neutral zinc metallopeptidase 1 307 1.0E-125 T 06-07-2017 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 SUPERFAMILY SSF52540 41 280 1.2E-168 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 SUPERFAMILY SSF52540 328 718 1.2E-168 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:1.10.486.10 477 621 7.5E-48 T 06-07-2017 CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Pfam PF13361 UvrD-like helicase C-terminal domain 364 693 1.7E-62 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:3.40.50.300 327 372 1.3E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:3.40.50.300 42 148 1.3E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:3.40.50.300 231 279 1.3E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:1.10.10.160 152 230 1.0E-21 T 06-07-2017 IPR013986 DExx box DNA helicase domain CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Pfam PF00580 UvrD/REP helicase N-terminal domain 47 281 5.0E-57 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Pfam PF00580 UvrD/REP helicase N-terminal domain 329 359 2.8E-9 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:3.40.50.300 631 724 1.2E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16565 b197afb8dbdb5c016977edcdab173d87 857 Gene3D G3DSA:3.40.50.300 373 476 1.2E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20335 cb31c695b99782bb57dac0ac477d7b0e 130 SUPERFAMILY SSF55298 3 126 7.38E-37 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS20335 cb31c695b99782bb57dac0ac477d7b0e 130 Pfam PF01042 Endoribonuclease L-PSP 12 126 6.4E-32 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS20335 cb31c695b99782bb57dac0ac477d7b0e 130 Gene3D G3DSA:3.30.1330.40 6 127 1.5E-39 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 Gene3D G3DSA:3.40.50.300 278 483 7.0E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 Gene3D G3DSA:3.40.50.300 3 223 8.2E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 SMART SM00382 26 227 1.1E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 SMART SM00382 286 479 1.8E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 Pfam PF00005 ABC transporter 17 173 5.8E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 Pfam PF00005 ABC transporter 278 431 3.0E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 SUPERFAMILY SSF52540 278 482 9.19E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24470 4de75ffc001b20fcb0e792cb6c81ccc9 503 SUPERFAMILY SSF52540 3 223 5.99E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 Gene3D G3DSA:1.10.10.10 8 78 4.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 Gene3D G3DSA:1.20.120.530 100 239 9.2E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 SUPERFAMILY SSF46785 10 81 1.04E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 SUPERFAMILY SSF48008 103 235 1.05E-19 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 77 5.0E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.2E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.2E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 SMART SM00345 18 77 6.8E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 Pfam PF07729 FCD domain 109 228 3.3E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS27900 a4735ef0bcaca1ef7eb57b7b038d02ef 244 SMART SM00895 106 230 1.4E-16 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS22550 691ae36d99bb2053540619c995bab73a 274 Gene3D G3DSA:3.40.50.620 153 274 8.4E-14 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS22550 691ae36d99bb2053540619c995bab73a 274 Pfam PF00582 Universal stress protein family 191 274 5.6E-7 T 06-07-2017 IPR006016 UspA GO:0006950 CDO28_RS22550 691ae36d99bb2053540619c995bab73a 274 SUPERFAMILY SSF52402 151 274 1.59E-16 T 06-07-2017 CDO28_RS22550 691ae36d99bb2053540619c995bab73a 274 PRINTS PR01438 Universal stress protein signature 234 246 7.0E-5 T 06-07-2017 IPR006015 Universal stress protein A CDO28_RS22550 691ae36d99bb2053540619c995bab73a 274 PRINTS PR01438 Universal stress protein signature 252 274 7.0E-5 T 06-07-2017 IPR006015 Universal stress protein A CDO28_RS15625 7954010c663b236bc497282e32d3fde9 149 Pfam PF09424 Yqey-like protein 3 148 1.0E-52 T 06-07-2017 IPR019004 Uncharacterised domain YOR215C, mitochondrial CDO28_RS15625 7954010c663b236bc497282e32d3fde9 149 Gene3D G3DSA:1.10.10.410 93 149 6.2E-20 T 06-07-2017 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CDO28_RS15625 7954010c663b236bc497282e32d3fde9 149 SUPERFAMILY SSF89095 2 148 5.23E-39 T 06-07-2017 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 CDO28_RS15625 7954010c663b236bc497282e32d3fde9 149 Gene3D G3DSA:1.10.1510.10 2 92 1.7E-29 T 06-07-2017 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 SUPERFAMILY SSF50104 120 176 9.03E-19 T 06-07-2017 IPR008991 Translation protein SH3-like domain CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 SMART SM00739 122 149 6.1E-5 T 06-07-2017 IPR005824 KOW CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 Pfam PF00467 KOW motif 126 156 4.6E-6 T 06-07-2017 IPR005824 KOW CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 Gene3D G3DSA:2.30.30.30 115 176 2.3E-30 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 Gene3D G3DSA:3.30.70.940 3 112 2.7E-42 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 SMART SM00738 2 110 2.0E-48 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 SUPERFAMILY SSF82679 4 112 4.97E-38 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 06-07-2017 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 1.2E-19 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 1.2E-19 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 1.2E-19 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 24.825 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 3.2E-67 T 06-07-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDO28_RS03695 8bbb759400249de861f208d89dbbb489 176 Pfam PF02357 Transcription termination factor nusG 4 107 9.7E-27 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SUPERFAMILY SSF55785 634 753 5.12E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SUPERFAMILY SSF52172 1041 1161 2.42E-17 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SUPERFAMILY SSF55874 856 1017 2.75E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Pfam PF12860 PAS fold 650 759 1.8E-30 T 06-07-2017 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Pfam PF00512 His Kinase A (phospho-acceptor) domain 801 865 3.1E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SUPERFAMILY SSF47384 784 865 3.34E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Pfam PF00072 Response regulator receiver domain 1044 1154 1.7E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SMART SM00448 1042 1156 1.4E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Gene3D G3DSA:1.10.287.130 794 861 4.0E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Gene3D G3DSA:3.30.450.20 634 755 1.6E-10 T 06-07-2017 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Gene3D G3DSA:3.30.565.10 866 1019 6.5E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SMART SM00388 800 865 1.5E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 910 1018 1.7E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 PRINTS PR00344 Bacterial sensor protein C-terminal signature 945 959 1.6E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 PRINTS PR00344 Bacterial sensor protein C-terminal signature 979 997 1.6E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 PRINTS PR00344 Bacterial sensor protein C-terminal signature 963 973 1.6E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1003 1016 1.6E-10 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 Gene3D G3DSA:3.40.50.2300 1040 1162 1.0E-15 T 06-07-2017 CDO28_RS07810 fc5a471263bec1385ca4c65bfa3c9b62 1168 SMART SM00387 909 1019 1.5E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 SUPERFAMILY SSF55205 1 429 5.4E-129 T 06-07-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 427 5.1E-165 T 06-07-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 428 44.758 T 06-07-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 Gene3D G3DSA:3.65.10.10 232 428 8.8E-54 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 Gene3D G3DSA:3.65.10.10 21 231 1.0E-68 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS07615 898b87c2eb18a7cbd856c73f5c4a377f 430 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 418 6.2E-94 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 Gene3D G3DSA:3.40.50.880 248 424 6.3E-21 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 SUPERFAMILY SSF52317 240 425 8.99E-26 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 424 3.8E-92 T 06-07-2017 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 SUPERFAMILY SSF52540 1 194 6.23E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 260 425 5.5E-32 T 06-07-2017 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 1 429 40.215 T 06-07-2017 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 Gene3D G3DSA:3.40.50.300 1 192 4.0E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17640 cfd834be6743a4b3f5ace5c332bff6bf 429 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 190 7.8E-22 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS24005 44211ea54b239c79d1e44d9e78872435 126 SUPERFAMILY SSF47413 63 121 8.19E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS24005 44211ea54b239c79d1e44d9e78872435 126 Gene3D G3DSA:1.10.260.40 48 121 2.4E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS24420 76c4dbd89c7df114e49f651984d25447 419 SUPERFAMILY SSF82544 6 418 5.23E-141 T 06-07-2017 CDO28_RS24420 76c4dbd89c7df114e49f651984d25447 419 Gene3D G3DSA:3.40.1480.10 242 419 9.8E-67 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS24420 76c4dbd89c7df114e49f651984d25447 419 Pfam PF05161 MOFRL family 308 412 3.4E-32 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS24420 76c4dbd89c7df114e49f651984d25447 419 Gene3D G3DSA:3.40.50.10180 9 241 4.2E-85 T 06-07-2017 CDO28_RS24420 76c4dbd89c7df114e49f651984d25447 419 Pfam PF13660 Domain of unknown function (DUF4147) 9 229 7.6E-69 T 06-07-2017 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 Pfam PF06742 Protein of unknown function (DUF1214) 394 499 6.5E-26 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 SUPERFAMILY SSF160935 44 515 1.57E-132 T 06-07-2017 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 Gene3D G3DSA:2.60.120.600 339 515 1.6E-53 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 Gene3D G3DSA:2.60.40.1610 106 244 7.8E-57 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 Pfam PF06863 Protein of unknown function (DUF1254) 106 239 1.3E-27 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS22025 c270c38c400c00f0385039493619fd69 516 Gene3D G3DSA:1.10.3360.10 245 334 6.9E-37 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS23735 0e8c6be30f2d76d998dc5bc5e78bace0 396 Pfam PF07690 Major Facilitator Superfamily 26 337 1.6E-28 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS23735 0e8c6be30f2d76d998dc5bc5e78bace0 396 SUPERFAMILY SSF103473 12 389 7.06E-52 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS23735 0e8c6be30f2d76d998dc5bc5e78bace0 396 Gene3D G3DSA:1.20.1250.20 215 389 3.3E-11 T 06-07-2017 CDO28_RS23735 0e8c6be30f2d76d998dc5bc5e78bace0 396 Gene3D G3DSA:1.20.1250.20 22 202 6.0E-28 T 06-07-2017 CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 SUPERFAMILY SSF46785 4 84 2.33E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 SMART SM00345 16 75 5.0E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 Gene3D G3DSA:3.40.640.10 152 365 2.0E-54 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 Gene3D G3DSA:1.10.10.10 3 76 1.4E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 SUPERFAMILY SSF53383 113 472 3.6E-87 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 1.1E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS22235 eef0a75981dd4acecf7158f22a07b098 493 Pfam PF00155 Aminotransferase class I and II 143 466 6.8E-25 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS24185 cfcdc5a2512c9ebaca118beef53cb1e1 440 Pfam PF07690 Major Facilitator Superfamily 24 367 7.4E-27 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS24185 cfcdc5a2512c9ebaca118beef53cb1e1 440 ProSitePatterns PS00217 Sugar transport proteins signature 2. 122 147 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS24185 cfcdc5a2512c9ebaca118beef53cb1e1 440 SUPERFAMILY SSF103473 10 431 1.57E-64 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS24185 cfcdc5a2512c9ebaca118beef53cb1e1 440 Gene3D G3DSA:1.20.1250.20 235 430 3.0E-21 T 06-07-2017 CDO28_RS24185 cfcdc5a2512c9ebaca118beef53cb1e1 440 Gene3D G3DSA:1.20.1250.20 11 215 4.0E-23 T 06-07-2017 CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 SUPERFAMILY SSF90002 260 355 7.19E-21 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 SMART SM00833 260 356 1.9E-30 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 Gene3D G3DSA:3.40.50.300 8 206 4.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 355 3.6E-20 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 SUPERFAMILY SSF52540 9 199 2.15E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 Gene3D G3DSA:3.30.1220.10 238 355 2.8E-28 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS13690 cf6d007c1876472234cf48ca1b8e462b 381 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 190 4.4E-49 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 811 1.4E-300 T 06-07-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 232 254 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 386 406 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 482 491 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 764 776 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 372 386 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 15 25 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 191 206 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 206 219 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 780 796 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR01159 DNA gyrase subunit B signature 324 340 2.0E-68 T 06-07-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Gene3D G3DSA:3.30.565.10 15 222 1.2E-87 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 45 60 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 432 446 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 537 549 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 80 93 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 517 534 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 123 137 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 743 759 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 280 293 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 PRINTS PR00418 DNA topoisomerase II family signature 499 515 2.3E-71 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 ProSitePatterns PS00177 DNA topoisomerase II signature. 434 442 - T 06-07-2017 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Gene3D G3DSA:3.40.50.670 728 793 1.3E-94 T 06-07-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Gene3D G3DSA:3.40.50.670 416 562 1.3E-94 T 06-07-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SUPERFAMILY SSF54211 233 403 2.28E-59 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SMART SM00433 45 804 2.5E-259 T 06-07-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SMART SM00387 41 186 2.7E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Pfam PF00204 DNA gyrase B 233 402 5.8E-57 T 06-07-2017 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 184 7.0E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Pfam PF01751 Toprim domain 431 543 9.6E-18 T 06-07-2017 IPR006171 Toprim domain CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SUPERFAMILY SSF56719 406 572 2.88E-86 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SUPERFAMILY SSF56719 737 802 2.88E-86 T 06-07-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 811 101.563 T 06-07-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Gene3D G3DSA:3.30.230.10 232 404 1.5E-73 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 739 800 1.3E-27 T 06-07-2017 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDO28_RS10575 9010fb5150075d978c5b417d20ff1edd 811 SUPERFAMILY SSF55874 15 221 2.36E-70 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 130 147 7.9E-11 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 77 88 7.9E-11 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 157 170 7.9E-11 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 Gene3D G3DSA:3.40.710.10 31 284 2.0E-86 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 53 269 1.3E-57 T 06-07-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 Gene3D G3DSA:3.30.70.1070 418 496 2.5E-6 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 SUPERFAMILY SSF110997 421 496 2.48E-7 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 Pfam PF05036 Sporulation related domain 420 497 3.5E-14 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS03345 f26f5d7d507b91315b2b78589797c655 500 SUPERFAMILY SSF56601 32 283 3.03E-73 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 272 340 2.3E-15 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 PIRSF PIRSF029347 1 378 3.0E-156 T 06-07-2017 IPR014555 RecF-like CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 Pfam PF13175 AAA ATPase domain 1 44 7.9E-9 T 06-07-2017 CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 Gene3D G3DSA:3.40.50.300 1 102 1.3E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 Gene3D G3DSA:3.40.50.300 271 353 2.1E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 SUPERFAMILY SSF52540 1 103 1.13E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11845 d4f83e719b4707f4f12b0539596e1986 378 SUPERFAMILY SSF52540 262 351 1.13E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 SUPERFAMILY SSF52402 442 566 6.41E-76 T 06-07-2017 CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 SUPERFAMILY SSF52402 236 388 6.41E-76 T 06-07-2017 CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 Pfam PF00733 Asparagine synthase 245 587 9.2E-89 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 588 0.0 T 06-07-2017 IPR017535 Asparagine synthase family amidotransferase CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 PIRSF PIRSF001589 1 591 3.1E-208 T 06-07-2017 CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 Pfam PF13537 Glutamine amidotransferase domain 47 166 2.1E-42 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 Gene3D G3DSA:3.40.50.620 437 586 1.8E-83 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 Gene3D G3DSA:3.40.50.620 224 384 1.8E-83 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 Gene3D G3DSA:3.60.20.10 1 223 1.1E-67 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 520 1.3E-129 T 06-07-2017 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 CDO28_RS32900 40f1ab6acd371273da51c6e9471c9939 591 SUPERFAMILY SSF56235 1 225 4.2E-60 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS00025 9281bebf02ce5f9f6f29884a05d47e64 275 SUPERFAMILY SSF82171 3 273 2.35E-43 T 06-07-2017 CDO28_RS00025 9281bebf02ce5f9f6f29884a05d47e64 275 Pfam PF07676 WD40-like Beta Propeller Repeat 103 137 2.0E-6 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS00025 9281bebf02ce5f9f6f29884a05d47e64 275 Pfam PF07676 WD40-like Beta Propeller Repeat 26 43 0.057 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS00025 9281bebf02ce5f9f6f29884a05d47e64 275 Pfam PF07676 WD40-like Beta Propeller Repeat 146 181 8.1E-11 T 06-07-2017 IPR011659 WD40-like Beta Propeller CDO28_RS00025 9281bebf02ce5f9f6f29884a05d47e64 275 Gene3D G3DSA:2.120.10.30 5 271 5.8E-68 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 SUPERFAMILY SSF56349 176 383 2.83E-37 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 Gene3D G3DSA:1.10.150.130 47 172 5.4E-11 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 Pfam PF00589 Phage integrase family 185 373 7.5E-13 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 Gene3D G3DSA:1.10.443.10 178 374 1.7E-48 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 SUPERFAMILY SSF47823 46 94 2.71E-7 T 06-07-2017 IPR010998 Integrase, Lambda-type, N-terminal CDO28_RS20260 cf42a5b33eb7caaa2e0051a6bcf91084 385 SUPERFAMILY SSF47823 125 173 2.71E-7 T 06-07-2017 IPR010998 Integrase, Lambda-type, N-terminal CDO28_RS05680 a6aeb7747e2031e65d1b46211007d1ca 293 Pfam PF01063 Amino-transferase class IV 40 264 6.9E-41 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS05680 a6aeb7747e2031e65d1b46211007d1ca 293 Gene3D G3DSA:3.30.470.10 11 130 5.4E-19 T 06-07-2017 CDO28_RS05680 a6aeb7747e2031e65d1b46211007d1ca 293 ProSitePatterns PS00770 Aminotransferases class-IV signature. 191 220 - T 06-07-2017 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS05680 a6aeb7747e2031e65d1b46211007d1ca 293 Gene3D G3DSA:3.20.10.10 136 286 3.1E-40 T 06-07-2017 CDO28_RS05680 a6aeb7747e2031e65d1b46211007d1ca 293 SUPERFAMILY SSF56752 10 288 1.44E-74 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 SMART SM00388 245 310 8.6E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 SUPERFAMILY SSF47384 228 309 2.75E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 Gene3D G3DSA:1.10.287.130 238 306 7.2E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 Pfam PF08521 Two-component sensor kinase N-terminal 27 169 2.3E-39 T 06-07-2017 IPR013727 Two-component sensor kinase, N-terminal CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 SMART SM00387 357 465 3.6E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 Gene3D G3DSA:3.30.565.10 319 463 6.8E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 309 3.0E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 SUPERFAMILY SSF55874 319 463 9.3E-28 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29900 ca4522f620ae4936a00fa3dd51a89575 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 463 2.7E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS11290 2991c264bad1ba7a23819bf8e6a79580 213 Pfam PF01810 LysE type translocator 19 208 1.2E-31 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS11290 2991c264bad1ba7a23819bf8e6a79580 213 PIRSF PIRSF006324 4 212 3.9E-50 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS09770 7faefbcc888d381bced69f1c9551174e 165 Pfam PF10003 Integral membrane protein (DUF2244) 20 159 1.1E-42 T 06-07-2017 IPR019253 Protein of unknown function DUF2244, transmembrane CDO28_RS09770 7faefbcc888d381bced69f1c9551174e 165 PIRSF PIRSF032162 1 165 9.2E-59 T 06-07-2017 IPR016990 Uncharacterised conserved protein UCP032162, transmembrane CDO28_RS00675 6068b0c2adec6e2e9f3d4e42b610749e 600 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 46 595 9.5E-159 T 06-07-2017 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 CDO28_RS00675 6068b0c2adec6e2e9f3d4e42b610749e 600 Pfam PF02272 DHHA1 domain 403 469 8.0E-11 T 06-07-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CDO28_RS00675 6068b0c2adec6e2e9f3d4e42b610749e 600 Pfam PF01368 DHH family 100 225 8.3E-12 T 06-07-2017 IPR001667 DDH domain CDO28_RS00675 6068b0c2adec6e2e9f3d4e42b610749e 600 SUPERFAMILY SSF64182 75 477 7.19E-109 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 458 2.4E-42 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 2.3E-79 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 330 2.4E-71 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 SUPERFAMILY SSF51905 2 368 3.42E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 Gene3D G3DSA:3.50.50.60 2 138 5.9E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 Gene3D G3DSA:3.30.390.30 337 462 7.6E-52 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 468 1.0E-181 T 06-07-2017 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 1.9E-40 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 1.9E-40 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.9E-40 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.9E-40 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.9E-40 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 Gene3D G3DSA:3.50.50.60 139 336 7.6E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 PIRSF PIRSF000350 1 467 4.2E-93 T 06-07-2017 CDO28_RS11825 12dbb758981cdbb92c76af80a2ea186f 468 SUPERFAMILY SSF55424 345 467 3.95E-44 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 Gene3D G3DSA:3.50.50.60 131 226 6.4E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 Gene3D G3DSA:3.50.50.60 8 130 3.9E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 Gene3D G3DSA:3.50.50.60 249 295 3.9E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 SUPERFAMILY SSF51905 223 296 4.76E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 SUPERFAMILY SSF51905 6 156 4.76E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 1.7E-14 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 260 278 1.7E-14 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 1.7E-14 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.7E-14 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 1.7E-14 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 5.6E-13 T 06-07-2017 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.6E-13 T 06-07-2017 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 250 272 5.6E-13 T 06-07-2017 CDO28_RS08755 92f88363e31278fc7eeb6cf467a92c92 301 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 285 3.5E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15360 a8d73f2fed531487a6b24cb9c756491a 302 Gene3D G3DSA:1.10.3290.10 22 223 1.1E-43 T 06-07-2017 IPR003812 Fido domain CDO28_RS15360 a8d73f2fed531487a6b24cb9c756491a 302 SUPERFAMILY SSF140931 58 227 1.96E-25 T 06-07-2017 IPR003812 Fido domain CDO28_RS15360 a8d73f2fed531487a6b24cb9c756491a 302 Pfam PF02661 Fic/DOC family 62 170 1.8E-13 T 06-07-2017 IPR003812 Fido domain CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 Gene3D G3DSA:1.20.1050.10 88 196 1.9E-15 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 Gene3D G3DSA:3.40.30.10 1 73 1.8E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 SUPERFAMILY SSF47616 88 199 9.47E-19 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 191 4.0E-9 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 SUPERFAMILY SSF52833 1 74 1.73E-6 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS10045 91e2d47a2b599bee99db2755d5317448 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 67 1.2E-4 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 Gene3D G3DSA:3.40.50.720 3 150 1.9E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 SUPERFAMILY SSF55021 352 421 2.09E-6 T 06-07-2017 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 SUPERFAMILY SSF51735 5 142 7.89E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 185 207 - T 06-07-2017 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 SUPERFAMILY SSF55347 139 304 5.1E-55 T 06-07-2017 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 130 7.1E-16 T 06-07-2017 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 PIRSF PIRSF000098 2 437 7.5E-162 T 06-07-2017 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 Pfam PF00742 Homoserine dehydrogenase 139 316 2.8E-64 T 06-07-2017 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CDO28_RS00670 17a1b284daa1b5cc373eede7f81bfe01 440 Gene3D G3DSA:3.30.360.10 151 300 8.2E-58 T 06-07-2017 CDO28_RS02945 1de1d890637b69c03d7f27ad65897d10 117 SUPERFAMILY SSF54736 32 116 3.71E-32 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS02945 1de1d890637b69c03d7f27ad65897d10 117 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 34 112 7.4E-34 T 06-07-2017 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 CDO28_RS02945 1de1d890637b69c03d7f27ad65897d10 117 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 23 112 28.266 T 06-07-2017 IPR022935 ATP-dependent Clp protease adaptor protein ClpS CDO28_RS02945 1de1d890637b69c03d7f27ad65897d10 117 Gene3D G3DSA:3.30.1390.10 20 116 6.8E-45 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 SMART SM00382 30 215 1.5E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 216 238 3.0E-9 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 SUPERFAMILY SSF52540 5 238 1.67E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 Gene3D G3DSA:3.40.50.300 2 238 7.1E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 Pfam PF00005 ABC transporter 21 166 1.8E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14250 7a3e25ede606be719ffabf9cb0b3dcb5 244 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 SUPERFAMILY SSF51556 51 357 5.72E-68 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 52 60 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 SUPERFAMILY SSF51338 1 70 2.4E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 Pfam PF07969 Amidohydrolase family 108 386 6.9E-19 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 Gene3D G3DSA:3.20.20.140 64 348 2.9E-88 T 06-07-2017 CDO28_RS14190 11cd44a1b8c65c797b6de5afaadd6aac 397 Gene3D G3DSA:2.30.40.10 1 63 1.6E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 Gene3D G3DSA:3.40.50.620 1 179 2.3E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 2.9E-34 T 06-07-2017 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 SUPERFAMILY SSF52402 3 180 8.37E-53 T 06-07-2017 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 SMART SM00893 3 181 3.0E-49 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 SUPERFAMILY SSF52467 188 308 9.81E-46 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 PIRSF PIRSF000089 1 309 1.7E-101 T 06-07-2017 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 Pfam PF01012 Electron transfer flavoprotein domain 4 170 8.8E-36 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 06-07-2017 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CDO28_RS13910 be7d585b679d7c9458ad24503a5d7816 309 Gene3D G3DSA:3.40.50.1220 184 309 2.5E-59 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS02665 68b6d9cbc951e5d2b52062d9a8b7a7bc 128 Gene3D G3DSA:3.40.1230.10 3 127 7.0E-39 T 06-07-2017 IPR007523 NDUFAF3/Mth938 domain-containing protein CDO28_RS02665 68b6d9cbc951e5d2b52062d9a8b7a7bc 128 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 18 126 2.6E-28 T 06-07-2017 IPR007523 NDUFAF3/Mth938 domain-containing protein CDO28_RS02665 68b6d9cbc951e5d2b52062d9a8b7a7bc 128 SUPERFAMILY SSF64076 5 127 3.27E-39 T 06-07-2017 IPR007523 NDUFAF3/Mth938 domain-containing protein CDO28_RS19580 a491559acd83efb1811633c5b67b867c 360 SUPERFAMILY SSF53474 231 258 4.22E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19580 a491559acd83efb1811633c5b67b867c 360 SUPERFAMILY SSF53474 13 201 4.22E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19580 a491559acd83efb1811633c5b67b867c 360 SUPERFAMILY SSF53474 288 359 4.22E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19580 a491559acd83efb1811633c5b67b867c 360 Gene3D G3DSA:3.40.50.1820 60 359 3.6E-75 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19580 a491559acd83efb1811633c5b67b867c 360 Pfam PF00561 alpha/beta hydrolase fold 108 341 8.1E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 SMART SM00044 1 196 3.6E-40 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 Gene3D G3DSA:3.30.70.1230 35 212 2.9E-18 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 Pfam PF13191 AAA ATPase domain 232 415 2.3E-18 T 06-07-2017 CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 SUPERFAMILY SSF52540 381 489 3.0E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 SUPERFAMILY SSF52540 232 290 3.0E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 Gene3D G3DSA:3.40.50.300 233 300 5.5E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 Gene3D G3DSA:3.40.50.300 360 431 5.5E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 SUPERFAMILY SSF55073 31 215 6.12E-31 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS16815 4856f9b5927ff88e59d8c54a46986989 1029 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 38 202 2.6E-8 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 Pfam PF00717 Peptidase S24-like 153 217 7.0E-15 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 Pfam PF01726 LexA DNA binding domain 2 63 2.3E-16 T 06-07-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 190 202 4.8E-10 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 161 172 4.8E-10 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 160 4.8E-10 T 06-07-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 Gene3D G3DSA:1.10.10.10 2 67 8.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 TIGRFAM TIGR00498 lexA: repressor LexA 2 237 4.9E-53 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 Hamap MF_00015 LexA repressor [lexA]. 1 237 34.404 T 06-07-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 SUPERFAMILY SSF46785 2 68 8.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 SUPERFAMILY SSF51306 113 235 5.58E-33 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS02085 aedf4f63ea637bfb971405b876c60343 238 Gene3D G3DSA:2.10.109.10 115 237 4.0E-39 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 SUPERFAMILY SSF51735 6 256 2.78E-77 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 4.8E-65 T 06-07-2017 CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 5.3E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 4.2E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.2E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.2E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14435 8bb6a5ab3b2fb9866440a9fc0c99a8bb 257 Gene3D G3DSA:3.40.50.720 6 257 4.9E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 SMART SM00861 644 837 2.9E-62 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 996 0.0 T 06-07-2017 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 PIRSF PIRSF000157 1 998 0.0 T 06-07-2017 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Pfam PF00676 Dehydrogenase E1 component 249 574 3.3E-61 T 06-07-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 13 51 7.2E-17 T 06-07-2017 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Gene3D G3DSA:3.40.50.970 197 593 3.9E-82 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Gene3D G3DSA:3.40.50.970 644 840 1.0E-19 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Pfam PF02779 Transketolase, pyrimidine binding domain 643 838 4.8E-67 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 SUPERFAMILY SSF52518 627 844 1.51E-52 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 SUPERFAMILY SSF52518 159 587 1.64E-94 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS11800 c087414026004671f8430b4cf888ea1b 998 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 841 996 3.2E-53 T 06-07-2017 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 SUPERFAMILY SSF56801 15 528 2.22E-141 T 06-07-2017 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Gene3D G3DSA:3.40.50.980 20 185 4.8E-35 T 06-07-2017 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Gene3D G3DSA:3.30.300.30 430 527 3.6E-28 T 06-07-2017 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 443 518 7.7E-18 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Gene3D G3DSA:3.40.50.980 186 338 5.7E-34 T 06-07-2017 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Pfam PF00501 AMP-binding enzyme 26 432 1.8E-91 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 Gene3D G3DSA:2.30.38.10 352 425 1.3E-26 T 06-07-2017 CDO28_RS00890 838bb5942c12fb6a9b98fa9a699c41b6 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 180 191 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Gene3D G3DSA:3.30.1360.120 152 239 1.5E-55 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Gene3D G3DSA:3.30.1360.120 7 59 1.5E-55 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Gene3D G3DSA:2.40.30.110 292 379 4.1E-24 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 SUPERFAMILY SSF103025 7 291 2.51E-82 T 06-07-2017 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 7 374 1.2E-100 T 06-07-2017 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 PIRSF PIRSF006487 2 379 2.1E-76 T 06-07-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 SUPERFAMILY SSF101790 283 379 2.62E-24 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Gene3D G3DSA:3.30.70.1400 60 150 3.7E-27 T 06-07-2017 CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Pfam PF01571 Aminomethyltransferase folate-binding domain 12 262 3.0E-81 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS02615 728e30843481f899d9916e0bdceefcd2 379 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 275 369 2.0E-20 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS00975 826c654dd8627688bac5e4855e834090 247 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 12 225 3.4E-58 T 06-07-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00149 Fumarate lyase superfamily signature 242 269 1.1E-29 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00149 Fumarate lyase superfamily signature 158 176 1.1E-29 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00149 Fumarate lyase superfamily signature 113 131 1.1E-29 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00149 Fumarate lyase superfamily signature 286 302 1.1E-29 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Gene3D G3DSA:1.10.275.10 13 117 7.9E-41 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Gene3D G3DSA:1.10.40.30 385 443 7.9E-31 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 SUPERFAMILY SSF48557 17 465 4.08E-147 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 286 302 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 153 173 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 242 266 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 112 134 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 321 340 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 PRINTS PR00145 Argininosuccinate lyase family signature 204 220 2.5E-67 T 06-07-2017 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Pfam PF00206 Lyase 17 311 2.3E-77 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Pfam PF14698 Argininosuccinate lyase C-terminal 374 443 1.1E-25 T 06-07-2017 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 TIGRFAM TIGR00838 argH: argininosuccinate lyase 14 465 2.4E-185 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 ProSitePatterns PS00163 Fumarate lyases signature. 286 295 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Hamap MF_00006 Argininosuccinate lyase [argH]. 13 465 42.989 T 06-07-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDO28_RS13895 bd0cd3edfc7369f59813d6901482d8ac 467 Gene3D G3DSA:1.20.200.10 118 384 3.3E-101 T 06-07-2017 CDO28_RS26125 a3d4c24684913548413d46d35e97d0ae 290 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 64 174 6.6E-18 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS26125 a3d4c24684913548413d46d35e97d0ae 290 SUPERFAMILY SSF161098 65 265 1.2E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26125 a3d4c24684913548413d46d35e97d0ae 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 277 1.4E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26125 a3d4c24684913548413d46d35e97d0ae 290 Gene3D G3DSA:1.10.3720.10 65 279 3.8E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 SUPERFAMILY SSF51338 373 428 3.77E-22 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 SUPERFAMILY SSF51338 5 61 3.77E-22 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 Hamap MF_00220_B Dihydroorotase [pyrC]. 4 430 32.368 T 06-07-2017 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 Pfam PF01979 Amidohydrolase family 242 427 6.0E-12 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 Gene3D G3DSA:3.20.20.140 63 383 1.5E-85 T 06-07-2017 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 Gene3D G3DSA:2.30.40.10 4 62 1.5E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 Gene3D G3DSA:2.30.40.10 384 429 1.5E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 24 428 2.5E-98 T 06-07-2017 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 CDO28_RS03935 2e9465ef477a35ff1e2f5fb86c250198 430 SUPERFAMILY SSF51556 62 374 2.11E-91 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 Gene3D G3DSA:3.40.50.300 227 395 2.7E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 Hamap MF_00900 GTPase HflX [hflX]. 57 426 46.317 T 06-07-2017 IPR016496 GTPase HflX GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 Pfam PF16360 GTP-binding GTPase Middle Region 144 223 2.1E-28 T 06-07-2017 IPR032305 GTP-binding protein, middle domain CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 Pfam PF01926 50S ribosome-binding GTPase 231 332 7.7E-18 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 49 396 5.5E-137 T 06-07-2017 IPR016496 GTPase HflX GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 Pfam PF13167 GTP-binding GTPase N-terminal 55 141 2.6E-27 T 06-07-2017 IPR025121 GTPase HflX, N-terminal CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 231 251 1.4E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 298 316 1.4E-6 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 PIRSF PIRSF006809 19 457 6.3E-147 T 06-07-2017 IPR016496 GTPase HflX GO:0005525 CDO28_RS03060 24773db9c8f923cfd2dc4b56361975de 465 SUPERFAMILY SSF52540 229 401 2.04E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 TIGRFAM TIGR00016 ackA: acetate kinase 3 387 2.4E-104 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 SUPERFAMILY SSF53067 158 389 6.05E-78 T 06-07-2017 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 Hamap MF_00020 Acetate kinase [ackA]. 1 392 154.985 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 06-07-2017 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 06-07-2017 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 Gene3D G3DSA:3.30.420.40 80 204 4.4E-5 T 06-07-2017 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PIRSF PIRSF000722 1 392 2.1E-140 T 06-07-2017 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 Pfam PF00871 Acetokinase family 4 383 1.1E-101 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 Gene3D G3DSA:3.30.420.40 205 387 1.2E-68 T 06-07-2017 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 173 186 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 318 334 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 202 223 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 296 309 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 4 15 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 PRINTS PR00471 Acetate kinase family signature 370 382 5.7E-37 T 06-07-2017 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDO28_RS26995 ed95fe5cee8651e01515393c3d2f68c7 392 SUPERFAMILY SSF53067 1 195 3.56E-55 T 06-07-2017 CDO28_RS20940 c32ed194fc2f89bb8240017f8db80afe 283 Gene3D G3DSA:3.20.10.10 126 277 9.0E-37 T 06-07-2017 CDO28_RS20940 c32ed194fc2f89bb8240017f8db80afe 283 Pfam PF01063 Amino-transferase class IV 32 254 1.9E-40 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS20940 c32ed194fc2f89bb8240017f8db80afe 283 Gene3D G3DSA:3.30.470.10 4 116 1.8E-30 T 06-07-2017 CDO28_RS20940 c32ed194fc2f89bb8240017f8db80afe 283 SUPERFAMILY SSF56752 4 277 1.23E-68 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Pfam PF13180 PDZ domain 266 357 9.6E-11 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Pfam PF13180 PDZ domain 399 444 7.8E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 100 112 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 197 214 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 306 318 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 121 141 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 PRINTS PR00834 HtrA/DegQ protease family signature 162 186 6.6E-51 T 06-07-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 462 3.2E-144 T 06-07-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Gene3D G3DSA:2.40.10.10 154 266 3.2E-39 T 06-07-2017 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Pfam PF13365 Trypsin-like peptidase domain 91 226 1.4E-32 T 06-07-2017 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SUPERFAMILY SSF50156 216 244 2.63E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SUPERFAMILY SSF50156 283 362 2.63E-19 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SUPERFAMILY SSF50494 37 254 3.54E-62 T 06-07-2017 IPR009003 Peptidase S1, PA clan CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SMART SM00228 266 348 2.3E-7 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SMART SM00228 375 457 1.2E-5 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 SUPERFAMILY SSF50156 376 461 3.15E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Gene3D G3DSA:2.30.42.10 267 363 1.1E-22 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Gene3D G3DSA:2.30.42.10 376 458 1.3E-15 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS03485 e6a2319c41228abeffed4317cb47e04d 465 Gene3D G3DSA:2.40.10.10 37 146 2.7E-34 T 06-07-2017 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 SUPERFAMILY SSF52172 137 268 3.13E-31 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 SMART SM00448 19 133 0.0051 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 SMART SM00448 142 256 9.4E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 Gene3D G3DSA:3.40.50.2300 19 140 2.5E-12 T 06-07-2017 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 Pfam PF00072 Response regulator receiver domain 21 122 2.5E-5 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 Pfam PF00072 Response regulator receiver domain 144 253 7.9E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 SUPERFAMILY SSF52172 19 140 2.99E-13 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS17355 408471a3ec6a361d2efe9bca014efecd 277 Gene3D G3DSA:3.40.50.2300 141 262 3.3E-32 T 06-07-2017 CDO28_RS14610 56d2874370d44d4b7adcc46cb1e582ae 277 Gene3D G3DSA:1.10.3720.10 6 264 1.8E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14610 56d2874370d44d4b7adcc46cb1e582ae 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 271 2.6E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14610 56d2874370d44d4b7adcc46cb1e582ae 277 SUPERFAMILY SSF161098 8 277 5.67E-70 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 1305 1479 0.0022 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 479 590 0.0072 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 1040 1143 7.2E-4 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 393 530 8.8E-6 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 268 396 3.2E-5 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 722 893 5.2E-15 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 1702 1853 5.8E-4 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 561 731 6.1E-8 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 904 1055 2.6E-5 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 1500 1700 1.1E-17 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 294 465 6.3E-9 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 Pfam PF01442 Apolipoprotein A1/A4/E domain 1143 1312 2.5E-6 T 06-07-2017 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-174800 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 SUPERFAMILY SSF58113 1631 1833 7.19E-5 T 06-07-2017 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 SUPERFAMILY SSF58113 293 462 8.37E-6 T 06-07-2017 CDO28_RS00180 d5499440def2be9aca1de1bdff2d3258 2089 SUPERFAMILY SSF58113 744 889 4.38E-8 T 06-07-2017 CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 49 374 1.3E-107 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 SMART SM00382 43 274 1.1E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 SUPERFAMILY SSF52540 19 257 3.59E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 SUPERFAMILY SSF50331 252 375 2.49E-12 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 Pfam PF00005 ABC transporter 35 176 4.7E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 Pfam PF08402 TOBE domain 294 375 1.9E-13 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS19995 6a023b9bbfbf836a69b669edefd99579 377 Gene3D G3DSA:3.40.50.300 17 249 3.0E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PIRSF PIRSF001400 1 423 5.5E-187 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 Pfam PF03952 Enolase, N-terminal domain 4 133 1.5E-58 T 06-07-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 422 1.2E-129 T 06-07-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 ProSitePatterns PS00164 Enolase signature. 333 346 - T 06-07-2017 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 SMART SM01193 4 133 4.6E-95 T 06-07-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 SUPERFAMILY SSF51604 137 421 3.68E-125 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 37 51 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 160 173 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 333 347 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 106 122 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 362 379 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 PRINTS PR00148 Enolase signature 310 321 1.2E-47 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 SMART SM01192 138 424 1.8E-217 T 06-07-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 Gene3D G3DSA:3.30.390.10 4 125 5.3E-55 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 2.1E-205 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 Hamap MF_00318 Enolase [eno]. 2 410 44.069 T 06-07-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 SUPERFAMILY SSF54826 3 137 1.85E-55 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS03170 66b7442b29c68c7272995365d715fe00 424 Gene3D G3DSA:3.20.20.120 127 422 2.2E-131 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS05040 c92313aebd2ac0863c7886457b45105b 359 Hamap MF_00568 Quinolinate synthase A [nadA]. 61 357 44.465 T 06-07-2017 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDO28_RS05040 c92313aebd2ac0863c7886457b45105b 359 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 63 357 1.3E-94 T 06-07-2017 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDO28_RS05040 c92313aebd2ac0863c7886457b45105b 359 Pfam PF02445 Quinolinate synthetase A protein 66 355 5.0E-110 T 06-07-2017 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDO28_RS05040 c92313aebd2ac0863c7886457b45105b 359 SUPERFAMILY SSF142754 63 357 1.7E-106 T 06-07-2017 CDO28_RS00105 a1b59caf49cfd56ac42290a244ca8972 458 Pfam PF02470 MlaD protein 49 117 4.3E-11 T 06-07-2017 IPR003399 Mce/MlaD CDO28_RS00105 a1b59caf49cfd56ac42290a244ca8972 458 Gene3D G3DSA:1.20.1170.10 144 370 5.2E-6 T 06-07-2017 CDO28_RS00105 a1b59caf49cfd56ac42290a244ca8972 458 SUPERFAMILY SSF58100 141 325 2.22E-7 T 06-07-2017 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Gene3D G3DSA:3.30.310.50 372 443 1.7E-16 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Gene3D G3DSA:3.40.120.10 3 138 8.2E-46 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 446 47.226 T 06-07-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 137 4.2E-43 T 06-07-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 4.9E-35 T 06-07-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 SUPERFAMILY SSF53738 260 368 5.89E-32 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 443 4.5E-17 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 1.7E-10 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.7E-10 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 1.7E-10 T 06-07-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 SUPERFAMILY SSF55957 360 446 3.79E-23 T 06-07-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Gene3D G3DSA:3.40.120.10 178 252 4.5E-26 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 SUPERFAMILY SSF53738 159 259 4.32E-29 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 SUPERFAMILY SSF53738 2 183 1.02E-44 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 443 3.6E-192 T 06-07-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 5.7E-18 T 06-07-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS13450 851d8d242930e5d9035fe3461cee9fe9 450 Gene3D G3DSA:3.40.120.10 253 370 1.2E-36 T 06-07-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Pfam PF00005 ABC transporter 327 458 1.1E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Pfam PF00005 ABC transporter 18 175 3.2E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 SUPERFAMILY SSF52540 299 509 7.53E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Pfam PF12848 ABC transporter 214 289 9.7E-25 T 06-07-2017 IPR032781 ABC-transporter extension domain CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 SUPERFAMILY SSF52540 2 86 3.86E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 SUPERFAMILY SSF52540 116 239 3.86E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Gene3D G3DSA:3.40.50.300 1 263 3.2E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Gene3D G3DSA:3.40.50.300 309 514 1.8E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 ProSitePatterns PS00211 ABC transporters family signature. 430 444 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 Pfam PF16326 ABC transporter C-terminal domain 558 620 2.4E-8 T 06-07-2017 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 SMART SM00382 336 503 2.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04700 c398a04edf7658f76f80352951c574fc 629 SMART SM00382 26 220 1.2E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 1.9E-146 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 93 108 - T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 412 432 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 353 375 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 214 233 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 309 327 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 186 204 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 PRINTS PR00175 Sodium/alanine symporter signature 93 115 1.4E-53 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS30935 84e9e7ae678c098a27cae9c11cb83978 467 Pfam PF01235 Sodium:alanine symporter family 59 450 9.8E-140 T 06-07-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 Gene3D G3DSA:3.10.20.30 2 75 1.0E-26 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 Pfam PF01799 [2Fe-2S] binding domain 74 147 2.7E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 SUPERFAMILY SSF47741 85 155 8.77E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 59 2.4E-5 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 Gene3D G3DSA:1.10.150.120 76 156 4.6E-33 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS12100 9a846e66bdff8a8c2b98e20cc87d831b 162 SUPERFAMILY SSF54292 2 79 4.06E-22 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS31860 23351a694e2d490fb062147d5fd32c72 352 SUPERFAMILY SSF55073 166 349 2.51E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS31860 23351a694e2d490fb062147d5fd32c72 352 SMART SM00044 136 335 6.6E-6 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS31860 23351a694e2d490fb062147d5fd32c72 352 Gene3D G3DSA:3.30.70.1230 171 349 2.6E-28 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS31860 23351a694e2d490fb062147d5fd32c72 352 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 172 310 8.1E-17 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 Pfam PF00226 DnaJ domain 4 66 2.2E-21 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 Gene3D G3DSA:1.10.287.110 3 120 3.5E-25 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 SUPERFAMILY SSF46565 4 72 7.98E-23 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 SMART SM00271 3 61 3.8E-21 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 SUPERFAMILY SSF49493 124 205 1.44E-19 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 Gene3D G3DSA:2.60.260.20 200 277 8.7E-22 T 06-07-2017 CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 Gene3D G3DSA:2.60.260.20 123 197 2.1E-19 T 06-07-2017 CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 PRINTS PR00625 DnaJ domain signature 24 39 6.8E-16 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 PRINTS PR00625 DnaJ domain signature 6 24 6.8E-16 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 PRINTS PR00625 DnaJ domain signature 41 61 6.8E-16 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 Pfam PF01556 DnaJ C terminal domain 133 276 1.4E-33 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal CDO28_RS21015 4d549e3e3176fe7146e4d7390a43e33a 306 SUPERFAMILY SSF49493 202 279 9.42E-21 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 Gene3D G3DSA:1.20.1560.10 15 318 1.4E-42 T 06-07-2017 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 SMART SM00382 358 545 3.0E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 SUPERFAMILY SSF52540 324 557 4.09E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 15 558 3.0E-223 T 06-07-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 Gene3D G3DSA:3.40.50.300 346 568 2.4E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 SUPERFAMILY SSF90123 15 318 6.28E-46 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 Pfam PF00664 ABC transporter transmembrane region 24 280 1.0E-19 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS29190 5e6c7d38d79206bdf4d88d001f9080a3 582 Pfam PF00005 ABC transporter 350 497 2.8E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 SUPERFAMILY SSF52172 141 254 8.11E-21 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 Gene3D G3DSA:3.40.50.2300 140 254 2.4E-21 T 06-07-2017 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 SUPERFAMILY SSF88659 87 134 8.11E-6 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 Gene3D G3DSA:1.10.10.10 92 137 7.1E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 Pfam PF08281 Sigma-70, region 4 93 127 5.0E-6 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 SMART SM00448 140 250 1.3E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 Pfam PF00072 Response regulator receiver domain 142 249 3.6E-11 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS06925 f908b960c08f3123ca3ae7b701142811 265 PIRSF PIRSF036400 1 264 9.3E-143 T 06-07-2017 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria CDO28_RS21850 763a447e50edda23f84767cffd55b607 386 Pfam PF00534 Glycosyl transferases group 1 215 322 1.4E-10 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS21850 763a447e50edda23f84767cffd55b607 386 SUPERFAMILY SSF53756 77 380 2.41E-20 T 06-07-2017 CDO28_RS21850 763a447e50edda23f84767cffd55b607 386 Gene3D G3DSA:3.40.50.2000 220 322 4.6E-5 T 06-07-2017 CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 ProSitePatterns PS01331 Thymidylate kinase signature. 104 116 - T 06-07-2017 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 SUPERFAMILY SSF52540 13 219 1.49E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 Gene3D G3DSA:3.40.50.300 13 219 3.6E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 Hamap MF_00165 Thymidylate kinase [tmk]. 15 219 29.081 T 06-07-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 13 208 9.7E-49 T 06-07-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CDO28_RS02135 22e48a09b26aa43c9ae4fb6825be3715 234 Pfam PF02223 Thymidylate kinase 19 209 2.3E-46 T 06-07-2017 CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 Gene3D G3DSA:3.40.350.10 2 158 2.5E-39 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 Pfam PF01321 Creatinase/Prolidase N-terminal domain 16 160 1.4E-22 T 06-07-2017 IPR000587 Creatinase, N-terminal GO:0016787 CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 Gene3D G3DSA:3.90.230.10 160 390 4.3E-46 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 Pfam PF00557 Metallopeptidase family M24 168 376 1.6E-33 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 TIGRFAM TIGR02993 ectoine_eutD: ectoine utilization protein EutD 3 393 1.3E-253 T 06-07-2017 IPR014335 Ectoine utilization protein EutD CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 SUPERFAMILY SSF53092 1 158 3.31E-42 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal CDO28_RS32720 ee8795695ff988acb80ab8da6d278ea9 393 SUPERFAMILY SSF55920 160 392 1.7E-57 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS11365 8f050f68d2aa8047b81bbba1dd40269b 337 Gene3D G3DSA:3.40.50.2300 152 321 6.1E-29 T 06-07-2017 CDO28_RS11365 8f050f68d2aa8047b81bbba1dd40269b 337 Pfam PF13407 Periplasmic binding protein domain 32 311 5.0E-57 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS11365 8f050f68d2aa8047b81bbba1dd40269b 337 Gene3D G3DSA:3.40.50.2300 31 151 6.2E-32 T 06-07-2017 CDO28_RS11365 8f050f68d2aa8047b81bbba1dd40269b 337 SUPERFAMILY SSF53822 29 328 5.22E-54 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 SMART SM00382 42 235 1.1E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 304 6.3E-17 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 Pfam PF00005 ABC transporter 34 185 2.5E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 Gene3D G3DSA:3.40.50.300 5 259 8.1E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 SUPERFAMILY SSF52540 27 256 5.45E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24325 9f096290cb556898ba8bc76a5ee3e38e 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 323 7.8E-25 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS27155 1311dfaea291189775aec2937800443d 440 Gene3D G3DSA:3.40.50.2000 205 397 1.3E-23 T 06-07-2017 CDO28_RS27155 1311dfaea291189775aec2937800443d 440 Pfam PF13439 Glycosyltransferase Family 4 20 221 5.2E-11 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS27155 1311dfaea291189775aec2937800443d 440 SUPERFAMILY SSF53756 6 138 3.19E-53 T 06-07-2017 CDO28_RS27155 1311dfaea291189775aec2937800443d 440 SUPERFAMILY SSF53756 168 418 3.19E-53 T 06-07-2017 CDO28_RS27155 1311dfaea291189775aec2937800443d 440 Pfam PF00534 Glycosyl transferases group 1 239 390 1.5E-21 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 SUPERFAMILY SSF64518 1 320 9.02E-63 T 06-07-2017 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 135 3.3E-28 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 Pfam PF00700 Bacterial flagellin C-terminal helical region 234 319 2.0E-18 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 PRINTS PR00207 Flagellin signature 75 94 3.3E-5 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 PRINTS PR00207 Flagellin signature 36 53 3.3E-5 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 PRINTS PR00207 Flagellin signature 107 130 3.3E-5 T 06-07-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 Gene3D G3DSA:1.20.1330.10 222 267 1.5E-15 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07275 8dd5e183de2be122b855a5fb8270347b 321 Gene3D G3DSA:1.20.1330.10 53 173 1.5E-15 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS19940 814878ebb21ad0ae8ae2b89cd16b37e0 275 Gene3D G3DSA:3.40.470.10 13 275 7.2E-34 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS19940 814878ebb21ad0ae8ae2b89cd16b37e0 275 SUPERFAMILY SSF52141 50 97 1.53E-8 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS19940 814878ebb21ad0ae8ae2b89cd16b37e0 275 SUPERFAMILY SSF52141 158 275 1.74E-12 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS19940 814878ebb21ad0ae8ae2b89cd16b37e0 275 Pfam PF03167 Uracil DNA glycosylase superfamily 69 264 2.3E-6 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 SUPERFAMILY SSF143034 2 60 5.1E-19 T 06-07-2017 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 06-07-2017 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 3.9E-19 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.2E-9 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.2E-9 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.2E-9 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.196 T 06-07-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDO28_RS09140 851f36bafdf5615d7dceed92b7d876c4 67 Pfam PF01632 Ribosomal protein L35 2 60 8.4E-19 T 06-07-2017 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 Gene3D G3DSA:1.20.1600.10 88 207 1.0E-6 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 SUPERFAMILY SSF111369 49 103 4.18E-8 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 Pfam PF13437 HlyD family secretion protein 216 334 1.7E-14 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 SUPERFAMILY SSF111369 194 277 2.62E-9 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 Gene3D G3DSA:2.40.50.100 50 82 6.8E-18 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 Gene3D G3DSA:2.40.50.100 213 247 6.8E-18 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 SUPERFAMILY SSF56954 89 200 1.57E-8 T 06-07-2017 CDO28_RS04835 3f7c48925e543d708162c54375ee2bdb 355 Pfam PF13533 Biotin-lipoyl like 49 97 2.8E-11 T 06-07-2017 CDO28_RS09835 34c3e83baef49e0253155b1f431c098e 284 SUPERFAMILY SSF50044 62 105 4.89E-7 T 06-07-2017 IPR001452 SH3 domain GO:0005515 CDO28_RS09835 34c3e83baef49e0253155b1f431c098e 284 Gene3D G3DSA:3.90.1720.10 165 283 2.6E-28 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain CDO28_RS09835 34c3e83baef49e0253155b1f431c098e 284 Pfam PF00877 NlpC/P60 family 179 259 1.3E-17 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain CDO28_RS09835 34c3e83baef49e0253155b1f431c098e 284 SUPERFAMILY SSF54001 159 283 5.89E-34 T 06-07-2017 CDO28_RS09835 34c3e83baef49e0253155b1f431c098e 284 Gene3D G3DSA:2.30.30.40 55 101 2.6E-6 T 06-07-2017 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 SUPERFAMILY SSF55200 94 178 1.31E-33 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 18 178 6.2E-64 T 06-07-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 11 178 28.163 T 06-07-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 Gene3D G3DSA:3.10.20.80 12 88 8.1E-32 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 18 86 1.5E-27 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 93 178 5.1E-39 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 Gene3D G3DSA:3.30.110.10 89 178 1.3E-39 T 06-07-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09145 353dff4097ca62656eccfa25dacf195f 178 SUPERFAMILY SSF54364 14 88 1.12E-26 T 06-07-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDO28_RS09075 639639843559dc8835b05ec26075a0c4 263 Gene3D G3DSA:1.10.260.40 2 59 1.3E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09075 639639843559dc8835b05ec26075a0c4 263 SUPERFAMILY SSF47413 1 59 1.85E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09075 639639843559dc8835b05ec26075a0c4 263 Pfam PF13560 Helix-turn-helix domain 2 60 1.1E-12 T 06-07-2017 CDO28_RS09075 639639843559dc8835b05ec26075a0c4 263 SMART SM00530 6 61 2.6E-11 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS06945 0482fc8629e7da9d4c82b8fc455791b5 275 SUPERFAMILY SSF52540 5 253 4.5E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06945 0482fc8629e7da9d4c82b8fc455791b5 275 SMART SM00382 39 231 4.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS06945 0482fc8629e7da9d4c82b8fc455791b5 275 Gene3D G3DSA:3.40.50.300 4 254 6.3E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06945 0482fc8629e7da9d4c82b8fc455791b5 275 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS06945 0482fc8629e7da9d4c82b8fc455791b5 275 Pfam PF00005 ABC transporter 30 181 4.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10090 467f42f77c4680450439c71b1193c4dd 346 Pfam PF11927 Protein of unknown function (DUF3445) 51 292 4.0E-53 T 06-07-2017 IPR021848 Protein of unknown function DUF3445 CDO28_RS13015 9e6fe266a4992206872fe5b8e7ca7a1e 504 SUPERFAMILY SSF53850 25 501 4.21E-134 T 06-07-2017 CDO28_RS13015 9e6fe266a4992206872fe5b8e7ca7a1e 504 Gene3D G3DSA:3.10.105.10 282 474 1.2E-53 T 06-07-2017 CDO28_RS13015 9e6fe266a4992206872fe5b8e7ca7a1e 504 PIRSF PIRSF002741 8 503 6.8E-113 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS13015 9e6fe266a4992206872fe5b8e7ca7a1e 504 Gene3D G3DSA:3.40.190.10 131 281 5.3E-43 T 06-07-2017 CDO28_RS13015 9e6fe266a4992206872fe5b8e7ca7a1e 504 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 418 1.8E-95 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS14540 5a8acd6444d4ee44be778023f11e5bc1 109 Pfam PF00355 Rieske [2Fe-2S] domain 6 94 8.8E-19 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14540 5a8acd6444d4ee44be778023f11e5bc1 109 SUPERFAMILY SSF50022 6 108 9.69E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14540 5a8acd6444d4ee44be778023f11e5bc1 109 Gene3D G3DSA:2.102.10.10 5 108 6.5E-30 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14540 5a8acd6444d4ee44be778023f11e5bc1 109 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 6 106 1.1E-58 T 06-07-2017 IPR012747 MocE Rieske [2Fe-2S] CDO28_RS17145 799c8703afc6747cea7b35ee9c923f7f 266 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 160 178 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS17145 799c8703afc6747cea7b35ee9c923f7f 266 SUPERFAMILY SSF54621 6 100 6.93E-6 T 06-07-2017 IPR010495 Haem-binding HasA CDO28_RS17145 799c8703afc6747cea7b35ee9c923f7f 266 Gene3D G3DSA:2.150.10.10 154 261 2.9E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17145 799c8703afc6747cea7b35ee9c923f7f 266 SUPERFAMILY SSF51120 152 264 3.4E-10 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17145 799c8703afc6747cea7b35ee9c923f7f 266 Gene3D G3DSA:3.30.1500.10 21 96 1.9E-5 T 06-07-2017 IPR010495 Haem-binding HasA CDO28_RS11475 c576e3c381d626a58069dcb856a85cd3 300 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 13 230 6.1E-41 T 06-07-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CDO28_RS11475 c576e3c381d626a58069dcb856a85cd3 300 Gene3D G3DSA:3.20.20.60 7 241 2.7E-73 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS11475 c576e3c381d626a58069dcb856a85cd3 300 PIRSF PIRSF015582 3 300 2.1E-68 T 06-07-2017 IPR011206 Citrate lyase beta subunit-like CDO28_RS11475 c576e3c381d626a58069dcb856a85cd3 300 SUPERFAMILY SSF51621 9 240 5.34E-64 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 374 6.2E-113 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 Gene3D G3DSA:3.40.630.10 298 387 3.5E-106 T 06-07-2017 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 Gene3D G3DSA:3.40.630.10 2 178 3.5E-106 T 06-07-2017 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 Pfam PF01546 Peptidase family M20/M25/M40 73 383 1.0E-34 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 Pfam PF07687 Peptidase dimerisation domain 185 280 7.4E-11 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 SUPERFAMILY SSF55031 184 291 3.01E-30 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 Gene3D G3DSA:3.30.70.360 181 297 8.8E-41 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 PIRSF PIRSF005962 1 389 5.1E-133 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 SUPERFAMILY SSF53187 298 386 5.71E-93 T 06-07-2017 CDO28_RS07775 54ec55ebf5b932faf97acb4bd152ab64 389 SUPERFAMILY SSF53187 3 197 5.71E-93 T 06-07-2017 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 SUPERFAMILY SSF52833 42 147 8.38E-34 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 SUPERFAMILY SSF48452 162 291 1.83E-8 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Gene3D G3DSA:1.25.40.10 243 329 8.4E-29 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Pfam PF00085 Thioredoxin 44 145 5.6E-26 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Pfam PF14561 Tetratricopeptide repeat 241 329 2.1E-28 T 06-07-2017 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 ProSitePatterns PS00194 Thioredoxin family active site. 64 82 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Pfam PF14559 Tetratricopeptide repeat 168 233 4.5E-13 T 06-07-2017 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Gene3D G3DSA:3.40.30.10 40 146 1.1E-32 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 Gene3D G3DSA:1.25.40.10 157 241 4.9E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 TIGRFAM TIGR01068 thioredoxin: thioredoxin 57 145 9.7E-31 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 PRINTS PR00421 Thioredoxin family signature 111 122 1.5E-5 T 06-07-2017 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 PRINTS PR00421 Thioredoxin family signature 71 80 1.5E-5 T 06-07-2017 CDO28_RS11430 976c308c8e41596804234b5b21bdfde9 330 PRINTS PR00421 Thioredoxin family signature 63 71 1.5E-5 T 06-07-2017 CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 SUPERFAMILY SSF52922 322 458 7.72E-42 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 SMART SM00861 138 313 2.0E-65 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 SUPERFAMILY SSF51230 1 96 8.51E-28 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Pfam PF00364 Biotin-requiring enzyme 4 77 9.3E-20 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Pfam PF02779 Transketolase, pyrimidine binding domain 137 312 2.8E-51 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 SUPERFAMILY SSF52518 137 327 1.18E-69 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Pfam PF02780 Transketolase, C-terminal domain 328 450 1.8E-40 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Gene3D G3DSA:2.40.50.100 1 97 1.5E-32 T 06-07-2017 CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Gene3D G3DSA:3.40.50.970 135 328 2.5E-97 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS03155 e171f07dccdceee3b2d1f0261d8eca26 460 Gene3D G3DSA:3.40.50.920 329 458 1.1E-44 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 SUPERFAMILY SSF52096 23 192 2.49E-56 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 Gene3D G3DSA:3.90.226.10 22 191 2.6E-62 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 111 124 - T 06-07-2017 IPR033135 ClpP, histidine active site CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 192 34.139 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 Pfam PF00574 Clp protease 22 190 9.8E-67 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 PRINTS PR00127 Clp protease catalytic subunit P signature 167 186 5.4E-30 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 PRINTS PR00127 Clp protease catalytic subunit P signature 89 106 5.4E-30 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 PRINTS PR00127 Clp protease catalytic subunit P signature 110 129 5.4E-30 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 5.4E-30 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS15315 631abba6c8abd73a783c911737c593c8 195 PRINTS PR00127 Clp protease catalytic subunit P signature 58 78 5.4E-30 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS17800 177d5e0bde886c0f07e5eded9d5ae2ba 340 Gene3D G3DSA:3.40.50.1980 227 337 1.4E-27 T 06-07-2017 CDO28_RS17800 177d5e0bde886c0f07e5eded9d5ae2ba 340 Gene3D G3DSA:3.40.50.1980 24 112 1.3E-46 T 06-07-2017 CDO28_RS17800 177d5e0bde886c0f07e5eded9d5ae2ba 340 Gene3D G3DSA:3.40.50.1980 151 226 1.3E-46 T 06-07-2017 CDO28_RS17800 177d5e0bde886c0f07e5eded9d5ae2ba 340 SUPERFAMILY SSF53807 24 336 2.16E-78 T 06-07-2017 CDO28_RS17800 177d5e0bde886c0f07e5eded9d5ae2ba 340 Pfam PF01297 Zinc-uptake complex component A periplasmic 26 335 1.9E-66 T 06-07-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CDO28_RS20930 5a7d92598d858df1ddeed16afc3c3b00 138 SUPERFAMILY SSF55298 13 135 9.74E-36 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS20930 5a7d92598d858df1ddeed16afc3c3b00 138 Pfam PF01042 Endoribonuclease L-PSP 19 133 1.8E-28 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS20930 5a7d92598d858df1ddeed16afc3c3b00 138 Gene3D G3DSA:3.30.1330.40 17 136 1.6E-40 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 SUPERFAMILY SSF52540 4 236 6.88E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 Gene3D G3DSA:3.40.50.300 3 235 2.3E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 PIRSF PIRSF039137 1 239 3.3E-104 T 06-07-2017 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 SMART SM00382 30 217 7.6E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14790 db8b5ae23110e05260b1420136c29930 241 Pfam PF00005 ABC transporter 21 165 4.5E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 5.9E-7 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 Pfam PF00107 Zinc-binding dehydrogenase 158 270 1.4E-21 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 SUPERFAMILY SSF51735 118 274 6.69E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 SMART SM00829 11 327 2.4E-33 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 Gene3D G3DSA:3.90.180.10 3 151 2.9E-41 T 06-07-2017 IPR011032 GroES-like CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 SUPERFAMILY SSF50129 8 147 1.57E-35 T 06-07-2017 IPR011032 GroES-like CDO28_RS20795 7b84810ff08f2bddb7c7d2567c39112b 329 Gene3D G3DSA:3.40.50.720 152 267 1.9E-25 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 305 33.991 T 06-07-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 Pfam PF02911 Formyl transferase, C-terminal domain 206 302 4.7E-25 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 Gene3D G3DSA:3.40.50.170 2 208 1.2E-67 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 Pfam PF00551 Formyl transferase 6 182 1.8E-34 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 SUPERFAMILY SSF50486 207 309 1.24E-27 T 06-07-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 06-07-2017 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 Gene3D G3DSA:3.10.25.10 209 310 5.4E-30 T 06-07-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 SUPERFAMILY SSF53328 3 209 1.07E-60 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS08440 8e4dda06b01198d22377ed94164592f8 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 302 9.7E-75 T 06-07-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CDO28_RS14015 ee6ee733e379bb2bb98f60013b291e17 308 SUPERFAMILY SSF55729 130 302 1.22E-19 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS14015 ee6ee733e379bb2bb98f60013b291e17 308 Pfam PF00583 Acetyltransferase (GNAT) family 223 296 2.3E-14 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS14015 ee6ee733e379bb2bb98f60013b291e17 308 Gene3D G3DSA:3.40.630.30 214 300 1.3E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 Pfam PF00005 ABC transporter 40 181 7.9E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 SUPERFAMILY SSF50331 256 379 3.06E-18 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 SUPERFAMILY SSF52540 23 263 3.73E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 54 379 8.6E-126 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 SMART SM00382 48 231 2.3E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 Pfam PF08402 TOBE domain 298 379 1.2E-14 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS07050 259266224b4705cc53953513b88f6abc 381 Gene3D G3DSA:3.40.50.300 18 258 1.4E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 SUPERFAMILY SSF56176 8 182 1.45E-39 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 Pfam PF01565 FAD binding domain 24 154 7.3E-25 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 Gene3D G3DSA:3.30.465.10 78 182 7.7E-26 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 Gene3D G3DSA:3.30.43.10 6 77 2.6E-17 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 Pfam PF04030 D-arabinono-1,4-lactone oxidase 264 408 9.5E-30 T 06-07-2017 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 CDO28_RS07000 db31eed389dba71059a616bbca0fbd63 412 Pfam PF04030 D-arabinono-1,4-lactone oxidase 179 227 3.8E-5 T 06-07-2017 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 CDO28_RS08910 913ed57219b8126386261c621e6f22e9 326 SUPERFAMILY SSF51735 10 269 1.04E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08910 913ed57219b8126386261c621e6f22e9 326 Gene3D G3DSA:3.40.50.720 10 233 5.6E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08910 913ed57219b8126386261c621e6f22e9 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 207 4.5E-14 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS03320 c18a7b6d7cb4a3806dfa994695303b67 220 Pfam PF07310 PAS domain 21 156 2.8E-50 T 06-07-2017 IPR009922 Protein of unknown function DUF1457 CDO28_RS03320 c18a7b6d7cb4a3806dfa994695303b67 220 PIRSF PIRSF031878 1 220 6.4E-82 T 06-07-2017 IPR009922 Protein of unknown function DUF1457 CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 Gene3D G3DSA:3.40.470.10 105 285 5.6E-46 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 SUPERFAMILY SSF52141 101 285 8.5E-48 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 SMART SM00987 130 279 3.5E-27 T 06-07-2017 CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 SMART SM00986 130 279 3.5E-27 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 117 282 2.8E-41 T 06-07-2017 IPR005273 Uracil-DNA glycosylase, family 4 domain CDO28_RS05365 7a31af3255e29186bea453b1e7523ef7 286 Pfam PF03167 Uracil DNA glycosylase superfamily 132 277 4.7E-35 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS33695 259faedadb38b2f06792a9bddce213f2 343 Pfam PF05159 Capsule polysaccharide biosynthesis protein 56 315 2.1E-35 T 06-07-2017 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 CDO28_RS00220 b590bf07abd6082fe2e6f8d6ee73452f 174 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 94 105 - T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00220 b590bf07abd6082fe2e6f8d6ee73452f 174 Gene3D G3DSA:3.30.70.560 9 155 1.1E-52 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00220 b590bf07abd6082fe2e6f8d6ee73452f 174 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 12 138 2.1E-37 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00220 b590bf07abd6082fe2e6f8d6ee73452f 174 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 10 138 5.4E-43 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00220 b590bf07abd6082fe2e6f8d6ee73452f 174 SUPERFAMILY SSF55083 8 159 1.27E-50 T 06-07-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS23925 407a3d58a1dbc7cb10db45ab2fae31dd 208 SUPERFAMILY SSF56784 1 203 7.64E-43 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS23925 407a3d58a1dbc7cb10db45ab2fae31dd 208 Gene3D G3DSA:3.40.50.1000 58 203 1.8E-37 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS23925 407a3d58a1dbc7cb10db45ab2fae31dd 208 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 77 175 2.1E-13 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS23925 407a3d58a1dbc7cb10db45ab2fae31dd 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 175 2.3E-23 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS34060 407a3d58a1dbc7cb10db45ab2fae31dd 208 SUPERFAMILY SSF56784 1 203 7.64E-43 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS34060 407a3d58a1dbc7cb10db45ab2fae31dd 208 Gene3D G3DSA:3.40.50.1000 58 203 1.8E-37 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS34060 407a3d58a1dbc7cb10db45ab2fae31dd 208 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 77 175 2.1E-13 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS34060 407a3d58a1dbc7cb10db45ab2fae31dd 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 175 2.3E-23 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS07320 f2bd56b774db3ce9ceec4bf6691402bf 169 Pfam PF13144 Chaperone for flagella basal body P-ring formation 45 166 8.2E-28 T 06-07-2017 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal CDO28_RS07320 f2bd56b774db3ce9ceec4bf6691402bf 169 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 38 166 1.0E-38 T 06-07-2017 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal CDO28_RS07320 f2bd56b774db3ce9ceec4bf6691402bf 169 SMART SM00858 43 105 1.1E-7 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS09195 b7e53188590419517f4dde64f8140d5f 175 Gene3D G3DSA:3.40.630.30 1 173 6.7E-39 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09195 b7e53188590419517f4dde64f8140d5f 175 SUPERFAMILY SSF55729 6 173 6.25E-29 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09195 b7e53188590419517f4dde64f8140d5f 175 Pfam PF00583 Acetyltransferase (GNAT) family 67 147 1.8E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 Pfam PF00005 ABC transporter 25 174 4.7E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 Pfam PF00005 ABC transporter 277 430 3.2E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 Gene3D G3DSA:3.40.50.300 277 479 3.1E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 SMART SM00382 285 479 1.6E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 SMART SM00382 34 222 1.3E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 SUPERFAMILY SSF52540 276 479 8.13E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 Gene3D G3DSA:3.40.50.300 7 233 3.3E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27500 d1d075c9fa646aebd9560695e91a460a 503 SUPERFAMILY SSF52540 8 232 7.08E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 Gene3D G3DSA:3.40.50.1820 7 268 2.6E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 7.6E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 7.6E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.6E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 7.6E-14 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 SUPERFAMILY SSF53474 4 266 5.4E-61 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21890 39e143605375b5bd40f4d256fdaa112f 276 Pfam PF12697 Alpha/beta hydrolase family 31 260 1.5E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13410 7e8be0b967eff56cb1c7f521327517af 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 83 213 1.4E-38 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 CDO28_RS13410 7e8be0b967eff56cb1c7f521327517af 239 TIGRFAM TIGR02796 tolQ: protein TolQ 14 225 4.3E-86 T 06-07-2017 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 CDO28_RS00460 6c315f39b1950db89da72b0f5a6b7b5e 184 Pfam PF06821 Serine hydrolase 8 176 5.0E-69 T 06-07-2017 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 CDO28_RS00460 6c315f39b1950db89da72b0f5a6b7b5e 184 Gene3D G3DSA:3.40.50.1820 4 181 4.1E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00460 6c315f39b1950db89da72b0f5a6b7b5e 184 SUPERFAMILY SSF53474 7 179 1.21E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 13 219 6.2E-64 T 06-07-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 181 1.6E-49 T 06-07-2017 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 Gene3D G3DSA:2.30.130.10 249 310 2.1E-4 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 SUPERFAMILY SSF55120 11 224 3.17E-74 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 SUPERFAMILY SSF88697 250 309 9.19E-5 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 251 308 3.9E-7 T 06-07-2017 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 12 308 18.089 T 06-07-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS09380 08e992440a42a03d0fa63cf41ca5ec28 311 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 247 1.2E-14 T 06-07-2017 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 CDO28_RS26495 2874298eb81a474cbc9d5cd3b269c6a4 429 Pfam PF01943 Polysaccharide biosynthesis protein 5 292 6.9E-14 T 06-07-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.198 T 06-07-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 Gene3D G3DSA:1.10.287.10 3 89 1.1E-39 T 06-07-2017 IPR009068 S15/NS1, RNA-binding CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 SMART SM01387 8 88 4.3E-53 T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 SUPERFAMILY SSF47060 3 89 1.85E-35 T 06-07-2017 IPR009068 S15/NS1, RNA-binding CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 Pfam PF00312 Ribosomal protein S15 8 88 2.0E-37 T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 06-07-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 6.6E-39 T 06-07-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS09370 875d93c703c4b1e4195d779fafeab1c0 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 7.0E-29 T 06-07-2017 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 PRINTS PR00149 Fumarate lyase superfamily signature 327 343 6.5E-32 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 PRINTS PR00149 Fumarate lyase superfamily signature 144 162 6.5E-32 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 PRINTS PR00149 Fumarate lyase superfamily signature 281 308 6.5E-32 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 PRINTS PR00149 Fumarate lyase superfamily signature 190 208 6.5E-32 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 ProSitePatterns PS00163 Fumarate lyases signature. 327 336 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Pfam PF10415 Fumarase C C-terminus 418 471 6.3E-23 T 06-07-2017 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 15 471 2.3E-225 T 06-07-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Gene3D G3DSA:1.20.200.10 149 413 3.1E-105 T 06-07-2017 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Gene3D G3DSA:1.10.275.10 13 148 2.7E-60 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Gene3D G3DSA:1.10.40.30 415 472 2.7E-30 T 06-07-2017 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Hamap MF_00743 Fumarate hydratase class II [fumC]. 14 472 91.85 T 06-07-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 Pfam PF00206 Lyase 22 352 1.9E-112 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal CDO28_RS18805 92acd57da3c79a172814a94c33e5d6fd 473 SUPERFAMILY SSF48557 14 473 1.12E-155 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS23685 8bf8c11e34abe3f98a7690022e0aae16 366 Pfam PF00248 Aldo/keto reductase family 49 342 1.2E-70 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS23685 8bf8c11e34abe3f98a7690022e0aae16 366 Gene3D G3DSA:3.20.20.100 36 356 2.8E-95 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS23685 8bf8c11e34abe3f98a7690022e0aae16 366 SUPERFAMILY SSF51430 37 343 1.57E-89 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 Pfam PF00107 Zinc-binding dehydrogenase 186 310 9.7E-21 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 SUPERFAMILY SSF50129 4 185 7.23E-47 T 06-07-2017 IPR011032 GroES-like CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 Gene3D G3DSA:3.40.50.720 178 296 9.9E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 145 2.5E-27 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 SUPERFAMILY SSF51735 155 302 6.62E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 68 82 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS32755 f23b8d31eff0473f55d6d7e4d25d18d9 352 Gene3D G3DSA:3.90.180.10 3 177 4.5E-45 T 06-07-2017 IPR011032 GroES-like CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 SUPERFAMILY SSF46785 4 91 3.69E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 Gene3D G3DSA:1.10.10.10 1 55 1.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 SMART SM00344 4 113 8.2E-49 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.5E-17 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.5E-17 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.5E-17 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 50 3.5E-20 T 06-07-2017 CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 SUPERFAMILY SSF54909 64 153 1.07E-22 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 6.8E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS13675 7f0ca07f0ddf7093a7dbdec29558973f 154 Gene3D G3DSA:3.30.70.920 56 153 7.3E-33 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Gene3D G3DSA:1.20.58.100 435 516 1.3E-19 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 1.9E-8 T 06-07-2017 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 351 373 1.9E-8 T 06-07-2017 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Gene3D G3DSA:3.90.700.10 242 344 8.1E-34 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 SUPERFAMILY SSF51905 352 404 1.63E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 SUPERFAMILY SSF51905 16 262 1.63E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 SUPERFAMILY SSF56425 236 348 8.52E-37 T 06-07-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 16 502 1.8E-147 T 06-07-2017 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Pfam PF00890 FAD binding domain 16 388 2.2E-84 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Pfam PF02910 Fumarate reductase flavoprotein C-term 436 519 1.4E-10 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 SUPERFAMILY SSF46977 435 519 6.93E-24 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 PIRSF PIRSF000171 12 530 2.4E-33 T 06-07-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Gene3D G3DSA:3.50.50.60 16 241 7.7E-87 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05035 b308f0403d292e629b1e32fe137a6548 532 Gene3D G3DSA:3.50.50.60 345 403 7.7E-87 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 348 376 6.6E-6 T 06-07-2017 IPR010177 Doubled CXXCH motif CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SMART SM00028 610 643 0.18 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SMART SM00028 678 711 43.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SMART SM00028 644 677 0.22 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Pfam PF13432 Tetratricopeptide repeat 618 672 1.9E-5 T 06-07-2017 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Pfam PF13435 Cytochrome c554 and c-prime 217 255 0.025 T 06-07-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Pfam PF13435 Cytochrome c554 and c-prime 87 113 0.0055 T 06-07-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Gene3D G3DSA:1.25.40.10 587 785 1.0E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SUPERFAMILY SSF48452 609 780 1.35E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Gene3D G3DSA:1.10.710.10 335 451 5.9E-37 T 06-07-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Gene3D G3DSA:1.10.710.10 82 124 5.9E-37 T 06-07-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 Gene3D G3DSA:1.10.710.10 208 296 5.9E-37 T 06-07-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SUPERFAMILY SSF48695 81 104 7.58E-62 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS25135 4f7901bae7a6e2ba42185da239aa76bf 797 SUPERFAMILY SSF48695 149 576 7.58E-62 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 PIRSF PIRSF038971 3 379 6.0E-139 T 06-07-2017 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 Gene3D G3DSA:2.30.40.10 6 93 1.1E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 SUPERFAMILY SSF51556 52 346 1.92E-16 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 Gene3D G3DSA:2.30.40.10 288 361 2.2E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 SUPERFAMILY SSF51338 4 52 1.55E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 SUPERFAMILY SSF51338 346 378 1.55E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 6 378 7.5E-158 T 06-07-2017 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 CDO28_RS26930 cca45301bd5f7f05204c5b742eae16c5 379 Pfam PF07969 Amidohydrolase family 258 378 8.9E-10 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 Pfam PF02311 AraC-like ligand binding domain 43 107 2.1E-8 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 SMART SM00342 184 266 3.2E-15 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 Pfam PF12833 Helix-turn-helix domain 190 267 2.8E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 Gene3D G3DSA:1.10.10.60 232 267 1.3E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 Gene3D G3DSA:1.10.10.60 165 219 3.5E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 SUPERFAMILY SSF46689 231 268 1.93E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 Gene3D G3DSA:2.60.120.10 41 106 1.3E-10 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS06275 9f143cc1f99afbfd64d866c3391bb65d 271 SUPERFAMILY SSF51182 40 199 5.97E-16 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 Pfam PF07690 Major Facilitator Superfamily 33 424 9.7E-52 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 SUPERFAMILY SSF103473 263 475 6.15E-62 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 SUPERFAMILY SSF103473 17 209 6.15E-62 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 152 176 1.3E-14 T 06-07-2017 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 31 55 1.3E-14 T 06-07-2017 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 122 142 1.3E-14 T 06-07-2017 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 415 434 1.3E-14 T 06-07-2017 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 Gene3D G3DSA:1.20.1250.20 275 473 9.1E-20 T 06-07-2017 CDO28_RS09505 0af0ec6c683adc67576e9ab36525d4a0 492 Gene3D G3DSA:1.20.1250.20 27 207 1.1E-28 T 06-07-2017 CDO28_RS29000 eb3445928fcd77465a3dc0901b55bdfd 356 Pfam PF01032 FecCD transport family 36 349 4.3E-82 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS29000 eb3445928fcd77465a3dc0901b55bdfd 356 Gene3D G3DSA:1.10.3470.10 24 354 7.0E-95 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS29000 eb3445928fcd77465a3dc0901b55bdfd 356 SUPERFAMILY SSF81345 18 348 2.09E-74 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS13260 3197df1a4bc407ef5aaebc98167ad6b3 433 SUPERFAMILY SSF103473 7 386 4.05E-48 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS13260 3197df1a4bc407ef5aaebc98167ad6b3 433 Pfam PF07690 Major Facilitator Superfamily 204 386 5.0E-18 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS13260 3197df1a4bc407ef5aaebc98167ad6b3 433 Gene3D G3DSA:1.20.1250.20 194 385 1.3E-24 T 06-07-2017 CDO28_RS13260 3197df1a4bc407ef5aaebc98167ad6b3 433 Gene3D G3DSA:1.20.1250.20 8 185 3.5E-12 T 06-07-2017 CDO28_RS13420 e025c495f7167a24f26a196ac09e1cd3 356 Gene3D G3DSA:3.30.1150.10 240 353 4.0E-7 T 06-07-2017 CDO28_RS13420 e025c495f7167a24f26a196ac09e1cd3 356 SUPERFAMILY SSF74653 156 168 9.02E-7 T 06-07-2017 CDO28_RS13420 e025c495f7167a24f26a196ac09e1cd3 356 SUPERFAMILY SSF74653 248 353 9.02E-7 T 06-07-2017 CDO28_RS32890 f7404cc6f756fbf72e226579125d9e41 265 Gene3D G3DSA:3.40.50.300 3 261 4.3E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32890 f7404cc6f756fbf72e226579125d9e41 265 SMART SM00382 41 233 5.7E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32890 f7404cc6f756fbf72e226579125d9e41 265 Pfam PF00005 ABC transporter 33 183 4.8E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32890 f7404cc6f756fbf72e226579125d9e41 265 SUPERFAMILY SSF52540 6 255 2.95E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32890 f7404cc6f756fbf72e226579125d9e41 265 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 SMART SM00490 500 596 5.2E-7 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 Hamap MF_00983 Probable primosomal protein N' [priA]. 20 733 22.99 T 06-07-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 Pfam PF00271 Helicase conserved C-terminal domain 512 596 6.6E-5 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 SUPERFAMILY SSF52540 227 275 4.75E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 SUPERFAMILY SSF52540 503 617 4.75E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 Gene3D G3DSA:3.40.50.300 201 386 2.7E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 Gene3D G3DSA:3.40.50.300 462 639 1.3E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 SMART SM00487 198 397 7.3E-15 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 Pfam PF04851 Type III restriction enzyme, res subunit 204 339 2.0E-9 T 06-07-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 TIGRFAM TIGR00595 priA: primosomal protein N' 226 730 1.9E-176 T 06-07-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CDO28_RS11870 6cafa9e7a2af0ab6875d5e54cd985faa 734 SUPERFAMILY SSF52540 201 385 5.6E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 2.5E-45 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 2.5E-45 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 2.5E-45 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 2.5E-45 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 2.5E-45 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 Pfam PF00361 Proton-conducting membrane transporter 128 417 1.5E-78 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24770 f0351247a3444bf2998b24caad349d36 491 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 6 483 3.2E-193 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS07745 1eb73adb3a4e73041dee93ed64281f2b 396 Gene3D G3DSA:3.90.1150.10 255 386 2.1E-32 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS07745 1eb73adb3a4e73041dee93ed64281f2b 396 Gene3D G3DSA:3.40.640.10 49 254 9.3E-65 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS07745 1eb73adb3a4e73041dee93ed64281f2b 396 SUPERFAMILY SSF53383 18 386 3.09E-105 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS07745 1eb73adb3a4e73041dee93ed64281f2b 396 Pfam PF00155 Aminotransferase class I and II 33 381 2.6E-66 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS11750 ffb571a647993351cfc80932bbe1dc80 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 306 7.3E-7 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11750 ffb571a647993351cfc80932bbe1dc80 312 Gene3D G3DSA:1.10.3720.10 82 311 5.2E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11750 ffb571a647993351cfc80932bbe1dc80 312 SUPERFAMILY SSF161098 76 300 3.53E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 402 6.6E-17 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 SUPERFAMILY SSF53244 317 462 4.43E-47 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Pfam PF01225 Mur ligase family, catalytic domain 10 106 6.2E-30 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Gene3D G3DSA:3.40.50.720 10 95 1.5E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Pfam PF08245 Mur ligase middle domain 112 298 1.2E-29 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 SUPERFAMILY SSF53623 93 316 3.01E-70 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Gene3D G3DSA:3.90.190.20 320 463 3.6E-50 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 7 465 42.736 T 06-07-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 SUPERFAMILY SSF51984 10 94 3.53E-28 T 06-07-2017 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 Gene3D G3DSA:3.40.1190.10 96 319 1.8E-86 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16400 401564e46b8f51d638c3aa38ce732bfb 471 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 10 458 2.6E-162 T 06-07-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 120 201 1.6E-9 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 Gene3D G3DSA:1.20.1050.10 96 206 3.0E-24 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 7 77 2.7E-14 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 Gene3D G3DSA:3.40.30.10 2 95 1.6E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 SUPERFAMILY SSF47616 82 211 1.85E-23 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS02590 90cd330557ab47d1e9d986388b2d66ae 212 SUPERFAMILY SSF52833 5 87 1.06E-20 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 366 2.0E-139 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 5 362 55.735 T 06-07-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 7 366 1.5E-144 T 06-07-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 363 8.9E-83 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 Gene3D G3DSA:3.20.20.105 2 367 2.6E-153 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS02245 ac427e43dcf350aad196e57c0b440ebb 376 SUPERFAMILY SSF51713 4 366 1.12E-148 T 06-07-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 SUPERFAMILY SSF52540 23 214 3.88E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 PIRSF PIRSF015617 15 214 3.8E-73 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 41 214 8.3E-61 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 40 214 2.2E-66 T 06-07-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 16 35 1.2E-4 T 06-07-2017 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 CDO28_RS17585 60be6599dcef2d264927df79cc856c13 214 Gene3D G3DSA:3.40.50.300 16 214 1.8E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32670 9461a988e501628b6752034230c8fedf 498 Gene3D G3DSA:3.40.309.10 284 472 5.8E-62 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS32670 9461a988e501628b6752034230c8fedf 498 Gene3D G3DSA:3.40.605.10 27 283 8.1E-94 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS32670 9461a988e501628b6752034230c8fedf 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS32670 9461a988e501628b6752034230c8fedf 498 Pfam PF00171 Aldehyde dehydrogenase family 33 491 1.3E-161 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS32670 9461a988e501628b6752034230c8fedf 498 SUPERFAMILY SSF53720 27 495 1.28E-159 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 Pfam PF08021 Siderophore-interacting FAD-binding domain 112 227 7.0E-30 T 06-07-2017 IPR013113 FAD-binding 9, siderophore-interacting CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 17 96 1.1E-11 T 06-07-2017 IPR014543 Uncharacterised conserved protein UCP028291 CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 SUPERFAMILY SSF63380 101 227 9.16E-6 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 Pfam PF04954 Siderophore-interacting protein 234 351 1.6E-27 T 06-07-2017 IPR007037 Siderophore-interacting protein CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 Gene3D G3DSA:3.40.50.80 234 353 3.1E-29 T 06-07-2017 CDO28_RS25320 e1f258a8c258eb9576494ee827dfd26e 356 Gene3D G3DSA:2.40.30.10 106 226 2.2E-22 T 06-07-2017 CDO28_RS24290 1c1b410b6c967c26d94465f67cc73707 466 Gene3D G3DSA:1.10.3720.10 232 454 2.4E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24290 1c1b410b6c967c26d94465f67cc73707 466 Gene3D G3DSA:1.10.3720.10 23 68 2.4E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24290 1c1b410b6c967c26d94465f67cc73707 466 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 280 452 5.0E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24290 1c1b410b6c967c26d94465f67cc73707 466 SUPERFAMILY SSF161098 233 461 3.78E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24290 1c1b410b6c967c26d94465f67cc73707 466 SUPERFAMILY SSF161098 26 69 3.78E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04605 be8c8ea994e5749b61164554f84c8567 289 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 268 40.33 T 06-07-2017 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CDO28_RS04605 be8c8ea994e5749b61164554f84c8567 289 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 279 3.9E-87 T 06-07-2017 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CDO28_RS04605 be8c8ea994e5749b61164554f84c8567 289 Gene3D G3DSA:3.40.50.150 1 281 1.2E-105 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04605 be8c8ea994e5749b61164554f84c8567 289 SUPERFAMILY SSF53335 8 280 2.5E-90 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 47 593 1.3E-293 T 06-07-2017 IPR017534 GNAT-acetyltransferase CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Gene3D G3DSA:3.40.630.30 128 260 9.2E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 SUPERFAMILY SSF55729 104 261 4.32E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 SUPERFAMILY SSF56059 511 587 5.22E-27 T 06-07-2017 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 SUPERFAMILY SSF56059 343 454 5.22E-27 T 06-07-2017 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Gene3D G3DSA:3.30.470.20 336 350 9.7E-14 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Gene3D G3DSA:3.30.470.20 421 449 9.7E-14 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Gene3D G3DSA:3.30.470.20 501 588 9.7E-14 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Pfam PF00583 Acetyltransferase (GNAT) family 178 258 1.9E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS32905 92c71ea6b6aa7545ffd696d0595c54db 595 Gene3D G3DSA:3.30.1490.20 353 420 2.3E-9 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS13505 03aebc64ad500eb36082423b17dece35 275 SUPERFAMILY SSF75217 120 268 7.85E-32 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS13505 03aebc64ad500eb36082423b17dece35 275 Gene3D G3DSA:3.40.1280.10 124 269 7.4E-39 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS13505 03aebc64ad500eb36082423b17dece35 275 Gene3D G3DSA:3.30.1330.30 8 108 3.5E-10 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS13505 03aebc64ad500eb36082423b17dece35 275 Pfam PF00588 SpoU rRNA Methylase family 127 266 1.1E-26 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDO28_RS13505 03aebc64ad500eb36082423b17dece35 275 SUPERFAMILY SSF55315 7 109 1.2E-13 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 339 1.9E-87 T 06-07-2017 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 SUPERFAMILY SSF102114 2 379 2.22E-109 T 06-07-2017 CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 Gene3D G3DSA:3.80.30.20 6 212 2.8E-32 T 06-07-2017 IPR023404 Radical SAM, alpha/beta horseshoe CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 Pfam PF04055 Radical SAM superfamily 9 178 1.5E-20 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 SMART SM00729 4 224 3.8E-55 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS08680 d8f97929d70990da66873563f9ecbe20 381 Pfam PF06969 HemN C-terminal domain 310 370 1.0E-10 T 06-07-2017 IPR010723 HemN, C-terminal CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 SUPERFAMILY SSF47175 25 146 2.65E-35 T 06-07-2017 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 PIRSF PIRSF000027 3 146 7.1E-47 T 06-07-2017 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 Gene3D G3DSA:1.20.120.10 24 147 1.7E-39 T 06-07-2017 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 Pfam PF01322 Cytochrome C' 28 144 6.5E-33 T 06-07-2017 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 PRINTS PR00608 Class II cytochrome C signature 110 133 8.6E-8 T 06-07-2017 IPR015984 Cytochrome c prime, subgroup CDO28_RS05650 86bfae3e6ad6dd382930d0c02a70a923 148 PRINTS PR00608 Class II cytochrome C signature 133 144 8.6E-8 T 06-07-2017 IPR015984 Cytochrome c prime, subgroup CDO28_RS05565 442eba27f3196f5c036781cc0789917c 125 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 111 6.8E-28 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 91 3.2E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 Gene3D G3DSA:1.20.120.530 94 236 2.1E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 SMART SM00895 101 225 2.7E-16 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 SMART SM00345 33 91 9.9E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 Gene3D G3DSA:1.10.10.10 10 91 2.2E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 SUPERFAMILY SSF46785 24 116 3.48E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 Pfam PF07729 FCD domain 105 224 8.9E-23 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21335 06f9fb70c80e2c699b1a4d04b5af8a69 242 SUPERFAMILY SSF48008 99 230 6.54E-24 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 Hamap MF_01403 Probable phosphoketolase. 18 801 41.15 T 06-07-2017 IPR023962 Probable phosphoketolase CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 PIRSF PIRSF017245 2 801 0.0 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 Pfam PF09363 XFP C-terminal domain 598 799 1.5E-93 T 06-07-2017 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 Pfam PF09364 XFP N-terminal domain 22 396 5.4E-189 T 06-07-2017 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 ProSitePatterns PS60002 Phosphoketolase signature 1. 157 163 - T 06-07-2017 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 SUPERFAMILY SSF52518 13 381 3.16E-75 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 SUPERFAMILY SSF52518 388 604 3.12E-26 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 ProSitePatterns PS60003 Phosphoketolase signature 2. 170 188 - T 06-07-2017 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 Gene3D G3DSA:3.40.50.970 66 268 9.7E-20 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS10070 974d0a76abe63239d054d3a0f20f1d54 817 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 411 587 2.3E-87 T 06-07-2017 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 CDO28_RS10290 d1fec830e9d7bf0688e03090793e37af 562 Gene3D G3DSA:1.10.3720.10 312 547 4.4E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10290 d1fec830e9d7bf0688e03090793e37af 562 Gene3D G3DSA:1.10.3720.10 11 280 2.0E-8 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10290 d1fec830e9d7bf0688e03090793e37af 562 SUPERFAMILY SSF161098 312 546 8.9E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10290 d1fec830e9d7bf0688e03090793e37af 562 SUPERFAMILY SSF161098 12 276 1.68E-10 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31060 fce6c9906e368a175ed6fdc7de1586ef 249 SUPERFAMILY SSF56219 3 241 4.84E-37 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS31060 fce6c9906e368a175ed6fdc7de1586ef 249 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 8 231 1.4E-19 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS31060 fce6c9906e368a175ed6fdc7de1586ef 249 Gene3D G3DSA:3.60.10.10 3 239 9.4E-15 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 Pfam PF00106 short chain dehydrogenase 6 188 1.2E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.9E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.9E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.9E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.9E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.9E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 8.0E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 8.0E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 8.0E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 Gene3D G3DSA:3.40.50.720 5 251 4.6E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 SUPERFAMILY SSF51735 5 249 5.13E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13935 50b41332e4fbb7a82a8bf33f25c78586 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS32840 777f4081bfee7ae66c00ce866845d6fa 325 Pfam PF02156 Glycosyl hydrolase family 26 147 224 8.4E-7 T 06-07-2017 IPR022790 Glycosyl hydrolase family 26 domain GO:0004553 CDO28_RS32840 777f4081bfee7ae66c00ce866845d6fa 325 SUPERFAMILY SSF51445 48 315 3.46E-59 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS32840 777f4081bfee7ae66c00ce866845d6fa 325 Gene3D G3DSA:3.20.20.80 86 314 3.0E-40 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 SUPERFAMILY SSF53850 45 263 1.44E-25 T 06-07-2017 CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 TIGRFAM TIGR03871 ABC_peri_MoxJ_2: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein 44 276 2.9E-89 T 06-07-2017 IPR022448 Quinoprotein dehydrogenase-associated CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 59 260 1.1E-12 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 SMART SM00062 44 271 5.3E-27 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 Gene3D G3DSA:3.40.190.10 121 223 4.9E-7 T 06-07-2017 CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 Gene3D G3DSA:3.40.190.10 46 120 9.9E-5 T 06-07-2017 CDO28_RS31485 d8932d7b1d67dc41418d4b230937be0a 288 Gene3D G3DSA:3.40.190.10 236 267 9.9E-5 T 06-07-2017 CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 SMART SM00116 240 288 4.7E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 SMART SM00116 303 351 6.0 T 06-07-2017 IPR000644 CBS domain CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 Pfam PF02163 Peptidase family M50 120 190 3.1E-7 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 Pfam PF02163 Peptidase family M50 46 118 1.0E-9 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 Gene3D G3DSA:3.10.580.10 231 346 2.5E-22 T 06-07-2017 CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 SUPERFAMILY SSF54631 232 350 5.68E-23 T 06-07-2017 CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 Pfam PF00571 CBS domain 233 288 5.8E-10 T 06-07-2017 IPR000644 CBS domain CDO28_RS27985 3d0e98228d246c0998dbdd90bcd143f8 372 PIRSF PIRSF006404 1 359 1.2E-122 T 06-07-2017 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS CDO28_RS17170 a38cdc51fb4d5fbc4e265690f2d97125 241 SUPERFAMILY SSF141571 42 184 2.35E-32 T 06-07-2017 CDO28_RS17170 a38cdc51fb4d5fbc4e265690f2d97125 241 Pfam PF00805 Pentapeptide repeats (8 copies) 139 178 1.2E-11 T 06-07-2017 IPR001646 Pentapeptide repeat CDO28_RS17170 a38cdc51fb4d5fbc4e265690f2d97125 241 Pfam PF00805 Pentapeptide repeats (8 copies) 79 117 1.2E-5 T 06-07-2017 IPR001646 Pentapeptide repeat CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 Gene3D G3DSA:3.40.630.10 3 180 1.8E-96 T 06-07-2017 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 Gene3D G3DSA:3.40.630.10 300 385 1.8E-96 T 06-07-2017 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 Pfam PF01546 Peptidase family M20/M25/M40 75 382 3.0E-34 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 372 2.7E-107 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 PIRSF PIRSF005962 2 387 2.3E-124 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 Gene3D G3DSA:3.30.70.360 183 299 5.7E-44 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 Pfam PF07687 Peptidase dimerisation domain 187 285 2.9E-14 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 SUPERFAMILY SSF55031 185 298 1.57E-32 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 SUPERFAMILY SSF53187 300 385 1.46E-84 T 06-07-2017 CDO28_RS13680 ca95e6b03d63b12fce0b0604f1e26a57 387 SUPERFAMILY SSF53187 2 199 1.46E-84 T 06-07-2017 CDO28_RS27695 5a12a2f562a0a42c5d144228e18c4ff8 156 Pfam PF13523 Acetyltransferase (GNAT) domain 1 104 2.1E-15 T 06-07-2017 CDO28_RS27695 5a12a2f562a0a42c5d144228e18c4ff8 156 SUPERFAMILY SSF55729 1 154 7.65E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS27695 5a12a2f562a0a42c5d144228e18c4ff8 156 Gene3D G3DSA:3.40.630.30 2 151 1.5E-18 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 Gene3D G3DSA:3.40.50.1000 7 21 2.1E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 Gene3D G3DSA:3.40.50.1000 89 220 2.1E-38 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 9 184 8.8E-18 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 Gene3D G3DSA:1.10.150.240 22 87 1.5E-10 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 185 3.0E-24 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15015 a37643b527dbc183f2bd4a866048c024 222 SUPERFAMILY SSF56784 7 221 4.28E-50 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS26685 caa5face432cd042114fe77805f15457 471 Pfam PF01522 Polysaccharide deacetylase 74 175 2.2E-10 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 3 298 8.7E-161 T 06-07-2017 IPR017625 Putative urate catabolism protein CDO28_RS26685 caa5face432cd042114fe77805f15457 471 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 310 467 7.5E-65 T 06-07-2017 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 SUPERFAMILY SSF158694 309 470 4.45E-54 T 06-07-2017 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 Gene3D G3DSA:1.10.3330.10 309 470 4.3E-61 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 Gene3D G3DSA:3.20.20.370 2 300 6.5E-100 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 SUPERFAMILY SSF88713 12 299 5.84E-86 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS26685 caa5face432cd042114fe77805f15457 471 Pfam PF09349 OHCU decarboxylase 308 466 6.2E-44 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS11585 75bdf74888647b6911e6b7fa9e0d6dae 274 PIRSF PIRSF018008 8 273 7.8E-120 T 06-07-2017 IPR008306 Uncharacterised conserved protein UCP018008 CDO28_RS11585 75bdf74888647b6911e6b7fa9e0d6dae 274 Pfam PF04250 Protein of unknown function (DUF429) 22 233 4.6E-14 T 06-07-2017 IPR007362 Protein of unknown function DUF429 CDO28_RS17265 7ed3a86ca75482a1bd68fffb5508a3f8 280 Pfam PF00535 Glycosyl transferase family 2 8 122 9.4E-20 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS17265 7ed3a86ca75482a1bd68fffb5508a3f8 280 SUPERFAMILY SSF53448 4 244 2.95E-31 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS17265 7ed3a86ca75482a1bd68fffb5508a3f8 280 Gene3D G3DSA:3.90.550.10 4 148 1.9E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 Pfam PF00202 Aminotransferase class-III 30 441 6.0E-96 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 Gene3D G3DSA:3.40.640.10 65 339 3.6E-77 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 Gene3D G3DSA:3.90.1150.10 342 448 9.2E-46 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 Gene3D G3DSA:3.90.1150.10 4 64 9.2E-46 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 PIRSF PIRSF000521 22 446 8.1E-29 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS25670 86d62c4a5418d54861048b12edd60495 458 SUPERFAMILY SSF53383 9 445 2.66E-119 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS25100 d7ad0419dc1f598697044d078e34cf9f 216 Pfam PF03729 Short repeat of unknown function (DUF308) 121 165 8.5E-5 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane CDO28_RS25100 d7ad0419dc1f598697044d078e34cf9f 216 Pfam PF03729 Short repeat of unknown function (DUF308) 26 93 3.8E-8 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 Gene3D G3DSA:3.30.70.270 418 523 1.2E-20 T 06-07-2017 CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 Pfam PF00990 Diguanylate cyclase, GGDEF domain 419 524 4.6E-13 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 SUPERFAMILY SSF141868 29 251 1.44E-59 T 06-07-2017 IPR001633 EAL domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 Pfam PF00563 EAL domain 30 249 8.6E-51 T 06-07-2017 IPR001633 EAL domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 SMART SM00267 404 575 2.0E-6 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 Gene3D G3DSA:3.10.580.10 286 408 5.2E-8 T 06-07-2017 CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 SUPERFAMILY SSF54631 287 408 5.9E-9 T 06-07-2017 CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 SMART SM00052 15 254 2.1E-39 T 06-07-2017 IPR001633 EAL domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 Gene3D G3DSA:3.20.20.450 29 251 3.3E-56 T 06-07-2017 IPR001633 EAL domain CDO28_RS05785 10b435a24ab8b52563359fe774da6a4a 599 SUPERFAMILY SSF55073 420 523 1.8E-19 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS05770 e4933c625bb845684f5220bb17664f83 336 Pfam PF06089 L-asparaginase II 7 328 2.9E-114 T 06-07-2017 IPR010349 L-asparaginase II CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 7.7E-50 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 237 5.4E-61 T 06-07-2017 CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.9E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.9E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.9E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 Gene3D G3DSA:3.40.50.720 3 239 2.2E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 SUPERFAMILY SSF51735 3 239 1.58E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 240 6.9E-118 T 06-07-2017 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216 CDO28_RS11030 6e1b8d1a916dbcb9f2c3468df16344d7 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 3.5E-4 T 06-07-2017 CDO28_RS08165 1e44ea09ede475d6547498c7b2e3244b 204 Pfam PF04773 FecR protein 65 157 6.1E-8 T 06-07-2017 IPR006860 FecR protein CDO28_RS06760 015c6fadad1f892cb594ba97eb0fd490 98 Pfam PF06568 Domain of unknown function (DUF1127) 30 64 4.4E-9 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 SUPERFAMILY SSF52172 3 184 3.23E-35 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 Gene3D G3DSA:3.40.50.2300 3 125 4.8E-34 T 06-07-2017 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 SMART SM00862 150 225 3.7E-31 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 Pfam PF00072 Response regulator receiver domain 7 116 9.3E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 2.0E-28 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 SMART SM00448 5 116 1.1E-34 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS05410 726d4f8939c1196a9f2766cc30556509 233 Gene3D G3DSA:1.10.10.10 126 227 8.2E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS34395 9abacdb78fa99a2fafaee7c3e2470ed4 194 Pfam PF07929 Plasmid pRiA4b ORF-3-like protein 6 172 3.0E-52 T 06-07-2017 IPR012912 Plasmid pRiA4b, Orf3 CDO28_RS34395 9abacdb78fa99a2fafaee7c3e2470ed4 194 Gene3D G3DSA:3.10.290.30 5 174 2.7E-46 T 06-07-2017 IPR024047 Protein MM3350-like domain CDO28_RS34395 9abacdb78fa99a2fafaee7c3e2470ed4 194 SUPERFAMILY SSF159941 6 176 1.57E-47 T 06-07-2017 IPR024047 Protein MM3350-like domain CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 Gene3D G3DSA:3.40.50.300 574 783 3.7E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 SUPERFAMILY SSF52540 576 775 3.48E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 578 757 1.9E-12 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 Pfam PF13807 G-rich domain on putative tyrosine kinase 409 479 1.0E-8 T 06-07-2017 IPR032807 Tyrosine kinase, G-rich domain CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 566 754 9.3E-35 T 06-07-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 Pfam PF02706 Chain length determinant protein 28 207 1.5E-28 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 CDO28_RS28180 a4c010e95cf0f32a51fc82d07b8868d1 786 TIGRFAM TIGR01005 eps_transp_fam: exopolysaccharide transport protein family 25 786 0.0 T 06-07-2017 IPR005700 Exopolysaccharide transport protein GO:0006859|GO:0015542 CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 PIRSF PIRSF009283 9 365 1.2E-105 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 Gene3D G3DSA:3.10.180.10 164 364 1.0E-62 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 Gene3D G3DSA:3.10.180.10 15 155 5.1E-37 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 168 282 1.4E-15 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 16 151 2.6E-50 T 06-07-2017 CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 23 364 1.1E-121 T 06-07-2017 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 CDO28_RS12390 eb80c5bc9674bcdaa449920ab7772ca5 370 SUPERFAMILY SSF54593 13 351 1.93E-76 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS28560 61e189a963a03e2d7bdd1ea91ec0e2c2 141 Pfam PF07883 Cupin domain 53 126 1.1E-12 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS28560 61e189a963a03e2d7bdd1ea91ec0e2c2 141 Gene3D G3DSA:2.60.120.10 41 133 2.4E-15 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS28560 61e189a963a03e2d7bdd1ea91ec0e2c2 141 SUPERFAMILY SSF51182 28 133 2.89E-16 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS13385 d41a8629219874fa253b727629eaa3e4 308 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 232 9.3E-28 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS13385 d41a8629219874fa253b727629eaa3e4 308 Gene3D G3DSA:3.40.50.720 1 234 3.2E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13385 d41a8629219874fa253b727629eaa3e4 308 SUPERFAMILY SSF51735 1 281 2.82E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Gene3D G3DSA:3.30.450.20 86 177 4.5E-6 T 06-07-2017 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Gene3D G3DSA:1.10.287.130 381 443 6.6E-4 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 SMART SM00387 488 598 8.4E-27 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 1.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 576 1.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 595 1.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 1.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 SUPERFAMILY SSF103190 54 188 1.22E-17 T 06-07-2017 IPR029151 Periplasmic sensor domain-like CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Pfam PF00512 His Kinase A (phospho-acceptor) domain 380 444 1.2E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Pfam PF02743 Cache domain 33 277 4.6E-17 T 06-07-2017 IPR033479 Double Cache domain 1 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 PIRSF PIRSF036431 1 605 3.5E-206 T 06-07-2017 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 596 1.2E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 SUPERFAMILY SSF47384 377 447 1.77E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 SMART SM00388 379 447 3.6E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 SUPERFAMILY SSF55874 438 595 3.8E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27065 ebaa1a3606160a6d419b553eece1f513 606 Gene3D G3DSA:3.30.565.10 451 597 9.5E-36 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 SUPERFAMILY SSF52540 4 241 3.42E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 SUPERFAMILY SSF50331 237 343 3.23E-13 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 Pfam PF08402 TOBE domain 271 343 9.6E-16 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 Pfam PF00005 ABC transporter 20 161 1.2E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 Gene3D G3DSA:2.40.50.140 274 335 7.1E-6 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 Gene3D G3DSA:3.40.50.300 4 238 7.2E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 SMART SM00382 28 211 1.8E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14700 daf628e1dfa774e2d75d8f36c7b9e1f1 345 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS02870 4d9b1a1c3a13301f12e1d4d291a043c8 277 Pfam PF01148 Cytidylyltransferase family 6 255 5.7E-56 T 06-07-2017 CDO28_RS02870 4d9b1a1c3a13301f12e1d4d291a043c8 277 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 217 243 - T 06-07-2017 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981 CDO28_RS10885 8d8ce715a7609511b9d0ffdb7c8a948e 423 Pfam PF05161 MOFRL family 309 416 4.0E-33 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS10885 8d8ce715a7609511b9d0ffdb7c8a948e 423 Gene3D G3DSA:3.40.1480.10 242 423 1.1E-67 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS10885 8d8ce715a7609511b9d0ffdb7c8a948e 423 Gene3D G3DSA:3.40.50.10180 10 241 3.4E-90 T 06-07-2017 CDO28_RS10885 8d8ce715a7609511b9d0ffdb7c8a948e 423 Pfam PF13660 Domain of unknown function (DUF4147) 12 230 4.3E-75 T 06-07-2017 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 CDO28_RS10885 8d8ce715a7609511b9d0ffdb7c8a948e 423 SUPERFAMILY SSF82544 5 422 1.06E-143 T 06-07-2017 CDO28_RS26515 50484e2e3a8d93574adcd6f30082c4fa 396 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 8 377 2.6E-92 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS26515 50484e2e3a8d93574adcd6f30082c4fa 396 SUPERFAMILY SSF53383 4 381 1.31E-96 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS26515 50484e2e3a8d93574adcd6f30082c4fa 396 PIRSF PIRSF000390 3 385 2.0E-100 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS26515 50484e2e3a8d93574adcd6f30082c4fa 396 Gene3D G3DSA:3.90.1150.10 251 377 2.4E-11 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS26515 50484e2e3a8d93574adcd6f30082c4fa 396 Gene3D G3DSA:3.40.640.10 5 250 1.0E-73 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 Hamap MF_01899 Ribonuclease D [rnd]. 1 364 44.342 T 06-07-2017 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 Pfam PF00570 HRDC domain 209 263 3.5E-12 T 06-07-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 TIGRFAM TIGR01388 rnd: ribonuclease D 1 365 2.5E-137 T 06-07-2017 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 Pfam PF01612 3'-5' exonuclease 1 168 3.0E-35 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 SUPERFAMILY SSF53098 1 201 3.1E-66 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 SUPERFAMILY SSF47819 298 366 1.87E-12 T 06-07-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 SUPERFAMILY SSF47819 187 296 2.24E-26 T 06-07-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 Gene3D G3DSA:3.30.420.10 2 180 6.9E-15 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS04540 c5299b0fe6715451b49284b384f9f104 383 SMART SM00474 1 168 1.3E-28 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS19440 be69a22381550a27b097e8634ebeb62e 51 Gene3D G3DSA:3.30.1330.40 7 49 3.5E-11 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS19440 be69a22381550a27b097e8634ebeb62e 51 Pfam PF01042 Endoribonuclease L-PSP 7 49 3.8E-10 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS19440 be69a22381550a27b097e8634ebeb62e 51 SUPERFAMILY SSF55298 6 49 6.75E-11 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 279 705 1.9E-144 T 06-07-2017 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Gene3D G3DSA:2.40.50.140 963 1035 3.8E-4 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Pfam PF01336 OB-fold nucleic acid binding domain 973 1048 2.0E-9 T 06-07-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 SMART SM00481 8 75 5.2E-6 T 06-07-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Pfam PF02811 PHP domain 11 126 1.2E-6 T 06-07-2017 IPR004013 PHP domain GO:0003824 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 1008 2.2E-143 T 06-07-2017 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 7 1116 14.007 T 06-07-2017 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 SUPERFAMILY SSF89550 14 249 5.1E-5 T 06-07-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Pfam PF14579 Helix-hairpin-helix motif 779 886 2.1E-22 T 06-07-2017 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS11495 e7bbddeb96060fa7d3b5093e946d4cc2 1116 Gene3D G3DSA:3.20.20.140 14 202 5.0E-5 T 06-07-2017 CDO28_RS31790 e5849865235c896a375cb9940c2df7fa 383 SUPERFAMILY SSF53756 31 375 4.08E-49 T 06-07-2017 CDO28_RS31790 e5849865235c896a375cb9940c2df7fa 383 Pfam PF13439 Glycosyltransferase Family 4 32 197 1.3E-15 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS31790 e5849865235c896a375cb9940c2df7fa 383 Gene3D G3DSA:3.40.50.2000 206 350 6.8E-15 T 06-07-2017 CDO28_RS31790 e5849865235c896a375cb9940c2df7fa 383 Pfam PF00534 Glycosyl transferases group 1 260 352 3.9E-15 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 Gene3D G3DSA:1.10.10.10 184 240 1.3E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 Gene3D G3DSA:3.30.450.80 11 183 1.6E-36 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 Pfam PF03472 Autoinducer binding domain 20 165 5.3E-31 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 234 4.1E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 SMART SM00421 178 235 8.4E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 2.7E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 2.7E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 2.7E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 SUPERFAMILY SSF46894 173 241 9.86E-15 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS23455 f20792d00a2cd2fe00b20beac622b6a9 243 SUPERFAMILY SSF75516 12 168 4.45E-37 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 Gene3D G3DSA:3.30.230.10 4 148 1.6E-27 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 500 7.1E-151 T 06-07-2017 IPR004482 Mg chelatase-related protein CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 140 1.4E-38 T 06-07-2017 CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 SUPERFAMILY SSF52540 189 501 1.94E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 500 1.6E-29 T 06-07-2017 IPR025158 Mg chelatase-related protein, C-terminal domain CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 SMART SM00382 209 391 2.2E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 Gene3D G3DSA:3.40.50.300 189 387 2.2E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 394 3.9E-93 T 06-07-2017 IPR000523 Magnesium chelatase ChlI domain CDO28_RS08865 51823ec697d0800bc0d2ac0dd5750ec9 510 SUPERFAMILY SSF54211 7 169 2.77E-31 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS12315 2b935e171ef1377b3edf9ae033a04502 153 SUPERFAMILY SSF88723 2 134 1.74E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS12315 2b935e171ef1377b3edf9ae033a04502 153 Pfam PF01850 PIN domain 4 118 6.4E-13 T 06-07-2017 IPR002716 PIN domain CDO28_RS12315 2b935e171ef1377b3edf9ae033a04502 153 Gene3D G3DSA:3.40.50.1010 3 118 2.2E-6 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS31330 1dc51b7cf277548ba67f8b083881032f 395 SUPERFAMILY SSF50939 310 389 5.05E-40 T 06-07-2017 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CDO28_RS31330 1dc51b7cf277548ba67f8b083881032f 395 SUPERFAMILY SSF50939 33 280 5.05E-40 T 06-07-2017 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CDO28_RS31330 1dc51b7cf277548ba67f8b083881032f 395 Gene3D G3DSA:2.120.10.10 30 279 5.3E-46 T 06-07-2017 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CDO28_RS31330 1dc51b7cf277548ba67f8b083881032f 395 Gene3D G3DSA:2.120.10.10 311 391 5.3E-46 T 06-07-2017 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CDO28_RS31330 1dc51b7cf277548ba67f8b083881032f 395 Pfam PF13088 BNR repeat-like domain 44 371 6.8E-62 T 06-07-2017 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CDO28_RS13145 d1c65a89331e6d1db69d691ebada080a 605 Gene3D G3DSA:3.30.1380.10 84 203 1.3E-26 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS13145 d1c65a89331e6d1db69d691ebada080a 605 SUPERFAMILY SSF55166 83 206 9.42E-33 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS13145 d1c65a89331e6d1db69d691ebada080a 605 Pfam PF05951 Bacterial protein of unknown function (DUF882) 50 201 5.0E-79 T 06-07-2017 IPR010275 Protein of unknown function DUF882 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 3.8E-16 T 06-07-2017 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.8E-16 T 06-07-2017 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 3.8E-16 T 06-07-2017 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 3.8E-16 T 06-07-2017 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 Gene3D G3DSA:3.50.50.60 264 341 7.1E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 Gene3D G3DSA:3.50.50.60 1 173 7.1E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 Pfam PF01494 FAD binding domain 3 333 2.5E-23 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 SUPERFAMILY SSF51905 1 167 4.2E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS09510 9ad9d67e655e6ea3af8ff20d79052273 386 SUPERFAMILY SSF51905 263 367 4.2E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 Gene3D G3DSA:2.30.40.10 29 71 4.8E-8 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 SUPERFAMILY SSF51338 351 430 1.06E-8 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 SUPERFAMILY SSF51556 70 374 9.61E-93 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 27 428 2.4E-177 T 06-07-2017 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 Gene3D G3DSA:2.30.40.10 361 429 5.5E-8 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 Gene3D G3DSA:3.20.20.140 72 360 1.7E-103 T 06-07-2017 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 Pfam PF01979 Amidohydrolase family 68 429 7.2E-56 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS28480 aa7f3697a5a58d35f8d5692555b880a3 438 SUPERFAMILY SSF51338 25 84 3.24E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS29030 c7a6aff4f66d61dd48d6c7c7ab4efa42 426 PIRSF PIRSF006066 3 425 6.4E-134 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS29030 c7a6aff4f66d61dd48d6c7c7ab4efa42 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 417 5.3E-113 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS29030 c7a6aff4f66d61dd48d6c7c7ab4efa42 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 421 1.4E-116 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS01135 7d76c07672e596debe2ad7d6c7a33358 739 Gene3D G3DSA:3.40.720.10 10 458 1.1E-99 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS01135 7d76c07672e596debe2ad7d6c7a33358 739 Pfam PF00884 Sulfatase 12 432 3.3E-78 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS01135 7d76c07672e596debe2ad7d6c7a33358 739 Gene3D G3DSA:3.30.1120.10 463 554 1.2E-15 T 06-07-2017 CDO28_RS01135 7d76c07672e596debe2ad7d6c7a33358 739 ProSitePatterns PS00523 Sulfatases signature 1. 56 68 - T 06-07-2017 IPR024607 Sulfatase, conserved site CDO28_RS01135 7d76c07672e596debe2ad7d6c7a33358 739 SUPERFAMILY SSF53649 12 542 8.29E-121 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS28230 0afea60814d5bc21164c72c6033739f8 410 Pfam PF01547 Bacterial extracellular solute-binding protein 41 324 3.0E-42 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS28230 0afea60814d5bc21164c72c6033739f8 410 SUPERFAMILY SSF53850 25 410 5.67E-76 T 06-07-2017 CDO28_RS28230 0afea60814d5bc21164c72c6033739f8 410 Gene3D G3DSA:3.40.190.10 139 340 1.3E-44 T 06-07-2017 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 Gene3D G3DSA:3.90.480.10 246 321 2.0E-13 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 Gene3D G3DSA:3.90.480.10 34 101 2.0E-13 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 Gene3D G3DSA:3.30.413.10 329 453 4.4E-8 T 06-07-2017 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 Gene3D G3DSA:3.30.413.10 107 208 4.0E-4 T 06-07-2017 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 SUPERFAMILY SSF56014 107 209 3.79E-10 T 06-07-2017 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 SUPERFAMILY SSF55124 16 97 2.29E-17 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 SUPERFAMILY SSF55124 236 322 4.19E-6 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 29 94 6.2E-13 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 SUPERFAMILY SSF56014 325 446 3.66E-13 T 06-07-2017 CDO28_RS12485 e4e01b681bfe1e14ab552e6f5e6c05c5 455 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 19 394 2.0E-104 T 06-07-2017 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like CDO28_RS17465 67957d193210c59994042a4743c3d486 206 Pfam PF07796 Protein of unknown function (DUF1638) 44 202 1.2E-36 T 06-07-2017 IPR012437 Domain of unknown function DUF1638 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 89 668 6.2E-134 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF81665 269 361 6.02E-16 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF81665 109 172 6.02E-16 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF81665 615 647 6.02E-16 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 367 381 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 513 523 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 491 502 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 566 585 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 218 232 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 589 601 4.1E-23 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF81653 172 268 2.22E-19 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Gene3D G3DSA:3.40.50.1000 492 634 1.6E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Gene3D G3DSA:3.40.50.1000 340 383 1.6E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF56784 365 385 1.59E-45 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 SUPERFAMILY SSF56784 423 666 1.59E-45 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Pfam PF00122 E1-E2 ATPase 139 358 3.7E-55 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 141 386 1.5E-33 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 467 645 1.1E-28 T 06-07-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Gene3D G3DSA:2.70.150.10 119 269 2.8E-21 T 06-07-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Pfam PF00702 haloacid dehalogenase-like hydrolase 363 580 2.5E-39 T 06-07-2017 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 Gene3D G3DSA:3.40.1110.10 389 491 4.8E-13 T 06-07-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 109 668 2.7E-154 T 06-07-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDO28_RS25835 64847772f9635a274ca8b9b09708db03 708 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 369 375 - T 06-07-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 Gene3D G3DSA:3.10.20.30 1 102 1.5E-38 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 06-07-2017 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 90 1.8E-15 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 PRINTS PR00355 Adrenodoxin signature 59 73 2.7E-7 T 06-07-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 PRINTS PR00355 Adrenodoxin signature 82 90 2.7E-7 T 06-07-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 PRINTS PR00355 Adrenodoxin signature 40 50 2.7E-7 T 06-07-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDO28_RS00195 551a0ef4cbd98ba4a2dd33d5bfaeb6c7 106 SUPERFAMILY SSF54292 3 104 8.56E-33 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 Pfam PF00732 GMC oxidoreductase 7 297 2.0E-90 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 PIRSF PIRSF000137 1 541 2.1E-149 T 06-07-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 84 107 - T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 Gene3D G3DSA:3.50.50.60 189 315 1.1E-120 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 Gene3D G3DSA:3.50.50.60 4 128 1.1E-120 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 Gene3D G3DSA:3.50.50.60 477 540 1.1E-120 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 Pfam PF05199 GMC oxidoreductase 398 534 4.5E-40 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 SUPERFAMILY SSF51905 483 540 2.78E-89 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 SUPERFAMILY SSF51905 5 290 2.78E-89 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19935 60a170ba87685713530656e50ea90e8b 541 SUPERFAMILY SSF54373 292 484 2.26E-51 T 06-07-2017 CDO28_RS00705 e06790616eab915ccb453737ea972f86 146 Gene3D G3DSA:3.10.180.10 2 129 3.2E-40 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS00705 e06790616eab915ccb453737ea972f86 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 124 2.7E-16 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS00705 e06790616eab915ccb453737ea972f86 146 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 06-07-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CDO28_RS00705 e06790616eab915ccb453737ea972f86 146 SUPERFAMILY SSF54593 1 133 2.69E-34 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05475 f3998641e6846dc08f1a8ad58a06e118 155 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 147 43.807 T 06-07-2017 IPR008228 Uncharacterised conserved protein UCP006173 CDO28_RS05475 f3998641e6846dc08f1a8ad58a06e118 155 PIRSF PIRSF006173 1 147 1.2E-67 T 06-07-2017 IPR008228 Uncharacterised conserved protein UCP006173 CDO28_RS05475 f3998641e6846dc08f1a8ad58a06e118 155 Pfam PF03692 Putative zinc- or iron-chelating domain 24 91 2.7E-10 T 06-07-2017 IPR005358 Putative zinc- or iron-chelating domain containing protein CDO28_RS00700 67332ff0334505b1ce73839322f38fa1 439 Pfam PF08291 Peptidase M15 324 423 4.5E-23 T 06-07-2017 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 CDO28_RS00700 67332ff0334505b1ce73839322f38fa1 439 SUPERFAMILY SSF55166 336 436 2.98E-22 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS00700 67332ff0334505b1ce73839322f38fa1 439 Gene3D G3DSA:3.30.1380.10 335 432 4.6E-22 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS00145 18409e7293f9872966be1a8697906dae 190 Pfam PF03358 NADPH-dependent FMN reductase 5 142 5.4E-34 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS00145 18409e7293f9872966be1a8697906dae 190 SUPERFAMILY SSF52218 1 181 8.85E-35 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS00145 18409e7293f9872966be1a8697906dae 190 Gene3D G3DSA:3.40.50.360 1 184 6.8E-45 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 Gene3D G3DSA:3.40.605.10 2 260 3.0E-91 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 Pfam PF00171 Aldehyde dehydrogenase family 16 471 3.9E-160 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 SUPERFAMILY SSF53720 2 476 5.11E-156 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 Gene3D G3DSA:3.40.309.10 261 446 8.9E-64 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS22890 1ec0030c5ec4573f0ad9d85cb1bfa1fc 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS29575 7d087a5984b08e73ffc39280be1e886e 304 Gene3D G3DSA:3.20.20.100 33 294 9.0E-41 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS29575 7d087a5984b08e73ffc39280be1e886e 304 Pfam PF00248 Aldo/keto reductase family 46 293 9.8E-27 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS29575 7d087a5984b08e73ffc39280be1e886e 304 SUPERFAMILY SSF51430 33 293 1.57E-48 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Gene3D G3DSA:1.10.8.10 1 54 2.1E-29 T 06-07-2017 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 SUPERFAMILY SSF46934 3 54 9.05E-21 T 06-07-2017 IPR009060 UBA-like GO:0005515 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Pfam PF00889 Elongation factor TS 70 288 3.4E-68 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 06-07-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 306 6.2E-91 T 06-07-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Gene3D G3DSA:3.30.479.20 150 197 7.8E-22 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Gene3D G3DSA:3.30.479.20 246 285 7.8E-22 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Gene3D G3DSA:3.30.479.20 56 149 4.8E-18 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 06-07-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Hamap MF_00050 Elongation factor Ts [tsf]. 1 305 78.673 T 06-07-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 SUPERFAMILY SSF54713 185 288 9.45E-45 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 SUPERFAMILY SSF54713 56 91 9.45E-45 T 06-07-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDO28_RS02890 f0c8dc87e7cf11de5d8794d5b82f9ae8 307 Gene3D G3DSA:1.10.286.20 203 245 7.1E-20 T 06-07-2017 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 8 245 4.1E-119 T 06-07-2017 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 9 242 37.956 T 06-07-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 Gene3D G3DSA:3.20.20.70 35 220 1.9E-11 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 PIRSF PIRSF000370 7 245 1.9E-62 T 06-07-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 Pfam PF04055 Radical SAM superfamily 33 124 1.2E-8 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 SUPERFAMILY SSF102114 32 123 3.92E-9 T 06-07-2017 CDO28_RS28055 3a0ce9975ec18400782177d8d9e145d7 245 Pfam PF13394 4Fe-4S single cluster domain 31 117 5.0E-8 T 06-07-2017 CDO28_RS29670 e0b954ecc70e67c6ca3586a84066e5e3 191 SUPERFAMILY SSF49899 5 177 1.15E-26 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS29670 e0b954ecc70e67c6ca3586a84066e5e3 191 Pfam PF07081 Protein of unknown function (DUF1349) 7 181 6.1E-65 T 06-07-2017 IPR009784 Protein of unknown function DUF1349 CDO28_RS29670 e0b954ecc70e67c6ca3586a84066e5e3 191 PIRSF PIRSF022704 1 191 1.6E-78 T 06-07-2017 IPR015987 Uncharacterised conserved protein UCP022704 CDO28_RS29670 e0b954ecc70e67c6ca3586a84066e5e3 191 Gene3D G3DSA:2.60.120.200 4 179 1.6E-20 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS06210 b17562257d1c7e86d6291ce355d14eee 329 Gene3D G3DSA:1.20.58.340 256 326 3.3E-13 T 06-07-2017 CDO28_RS06210 b17562257d1c7e86d6291ce355d14eee 329 SUPERFAMILY SSF144083 265 324 1.7E-11 T 06-07-2017 CDO28_RS06210 b17562257d1c7e86d6291ce355d14eee 329 Pfam PF01544 CorA-like Mg2+ transporter protein 40 325 1.8E-52 T 06-07-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDO28_RS06210 b17562257d1c7e86d6291ce355d14eee 329 SUPERFAMILY SSF143865 8 263 4.45E-30 T 06-07-2017 CDO28_RS19850 704a74769d3201a722f4a02818a08391 141 SUPERFAMILY SSF52833 4 137 3.1E-37 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS19850 704a74769d3201a722f4a02818a08391 141 Gene3D G3DSA:3.40.30.10 2 140 9.5E-57 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS19850 704a74769d3201a722f4a02818a08391 141 Pfam PF03960 ArsC family 6 114 5.5E-16 T 06-07-2017 IPR006660 Arsenate reductase-like CDO28_RS19850 704a74769d3201a722f4a02818a08391 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 115 1.3E-43 T 06-07-2017 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 CDO28_RS18560 212ca0f06a9d5d7a580d8095ee423570 356 Gene3D G3DSA:1.10.443.10 174 339 1.5E-24 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS18560 212ca0f06a9d5d7a580d8095ee423570 356 SUPERFAMILY SSF56349 66 337 5.3E-36 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS18560 212ca0f06a9d5d7a580d8095ee423570 356 Pfam PF00589 Phage integrase family 179 337 4.2E-14 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 8.2E-14 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 SUPERFAMILY SSF46689 12 88 2.51E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.5E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.5E-6 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 Gene3D G3DSA:1.10.357.10 13 200 9.4E-30 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS32315 c349408a6602b2bc82d2401e3aa5c743 202 SUPERFAMILY SSF48498 87 201 3.18E-13 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 Gene3D G3DSA:1.10.10.10 154 221 6.7E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 SMART SM00448 14 128 4.5E-18 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 SMART SM00421 162 219 2.7E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 218 1.3E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 Gene3D G3DSA:3.40.50.2300 16 140 1.9E-26 T 06-07-2017 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 1.3E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 1.3E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 1.3E-8 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 Pfam PF00072 Response regulator receiver domain 17 128 4.3E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 SUPERFAMILY SSF52172 15 140 1.57E-25 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 179 206 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS31420 ee557e85290046b3ce066e12d26c572d 229 SUPERFAMILY SSF46894 155 223 1.16E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS25765 6805588262d1d9ead54a96ebba9c7c64 334 Pfam PF01032 FecCD transport family 17 324 2.3E-77 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS25765 6805588262d1d9ead54a96ebba9c7c64 334 SUPERFAMILY SSF81345 7 324 4.45E-65 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25765 6805588262d1d9ead54a96ebba9c7c64 334 Gene3D G3DSA:1.10.3470.10 4 326 5.4E-85 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS08375 052f9b0bd85be151b0517b6c6c6e6b8a 299 Pfam PF03641 Possible lysine decarboxylase 150 279 2.3E-30 T 06-07-2017 IPR031100 LOG family CDO28_RS08375 052f9b0bd85be151b0517b6c6c6e6b8a 299 SUPERFAMILY SSF102405 49 280 8.24E-54 T 06-07-2017 CDO28_RS08375 052f9b0bd85be151b0517b6c6c6e6b8a 299 Gene3D G3DSA:3.40.50.450 61 287 1.7E-62 T 06-07-2017 CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 Pfam PF00156 Phosphoribosyl transferase domain 298 397 3.7E-9 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 Gene3D G3DSA:3.40.50.2020 282 450 1.1E-44 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 PIRSF PIRSF000485 18 489 4.1E-159 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 SUPERFAMILY SSF56235 22 239 1.89E-62 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 21 475 45.255 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 Pfam PF13537 Glutamine amidotransferase domain 103 219 4.2E-18 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 Gene3D G3DSA:3.60.20.10 22 269 1.2E-56 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 SUPERFAMILY SSF53271 262 482 1.84E-71 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS04885 bdaa1e7d7a9b059fdc1d935645300d06 496 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 22 474 6.6E-145 T 06-07-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 Hamap MF_00577 Urocanate hydratase [hutU]. 4 557 51.203 T 06-07-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 SUPERFAMILY SSF111326 10 555 9.16E-263 T 06-07-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 Gene3D G3DSA:3.40.1770.10 361 554 1.6E-161 T 06-07-2017 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 Gene3D G3DSA:3.40.1770.10 11 142 1.6E-161 T 06-07-2017 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 1.3E-295 T 06-07-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 Pfam PF01175 Urocanase 13 548 2.8E-260 T 06-07-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 ProSitePatterns PS01233 Urocanase signature. 443 458 - T 06-07-2017 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 PIRSF PIRSF001423 1 558 1.5E-294 T 06-07-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26890 4d427216f86c386a2f1ca544b284a513 559 Gene3D G3DSA:3.40.50.10730 143 350 6.4E-95 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 11 440 9.0E-136 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 SUPERFAMILY SSF111369 245 341 3.53E-5 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 Gene3D G3DSA:2.40.50.100 288 322 3.0E-17 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 Gene3D G3DSA:2.40.50.100 56 86 3.0E-17 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 SUPERFAMILY SSF111369 47 99 4.45E-5 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 Pfam PF13437 HlyD family secretion protein 291 374 3.3E-14 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 Pfam PF13533 Biotin-lipoyl like 53 93 2.4E-8 T 06-07-2017 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 303 324 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 419 439 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 64 84 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 360 383 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 404 419 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05015 ba1c54df8d5c294bd164fd4eb8570043 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 336 360 2.8E-34 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS05995 f92d5eafff3528c84da0f10bcf620d1d 153 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 35.973 T 06-07-2017 IPR022892 Ribonuclease H GO:0004523 CDO28_RS05995 f92d5eafff3528c84da0f10bcf620d1d 153 Gene3D G3DSA:3.30.420.10 2 141 1.1E-61 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS05995 f92d5eafff3528c84da0f10bcf620d1d 153 SUPERFAMILY SSF53098 1 141 3.54E-60 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS05995 f92d5eafff3528c84da0f10bcf620d1d 153 Pfam PF00075 RNase H 2 140 3.1E-51 T 06-07-2017 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 432 1.9E-156 T 06-07-2017 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00145 Argininosuccinate lyase family signature 264 280 4.2E-6 T 06-07-2017 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00145 Argininosuccinate lyase family signature 219 243 4.2E-6 T 06-07-2017 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00145 Argininosuccinate lyase family signature 131 151 4.2E-6 T 06-07-2017 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00149 Fumarate lyase superfamily signature 219 246 6.1E-26 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 6.1E-26 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00149 Fumarate lyase superfamily signature 91 109 6.1E-26 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 PRINTS PR00149 Fumarate lyase superfamily signature 264 280 6.1E-26 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 Gene3D G3DSA:1.20.200.10 94 359 1.7E-87 T 06-07-2017 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 SUPERFAMILY SSF48557 3 432 2.04E-136 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 Gene3D G3DSA:1.10.275.10 2 93 9.7E-33 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 431 2.0E-28 T 06-07-2017 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 Pfam PF00206 Lyase 7 287 1.6E-52 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 ProSitePatterns PS00163 Fumarate lyases signature. 264 273 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 SMART SM00998 352 432 8.7E-44 T 06-07-2017 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDO28_RS00480 5f77b515cf0ff5128dbf36a27bf6694c 435 Gene3D G3DSA:1.10.40.30 360 432 1.9E-37 T 06-07-2017 CDO28_RS14160 1fa4d3ea186ac64401b93b3e5bc6b74f 241 SUPERFAMILY SSF53681 161 210 1.86E-5 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS14160 1fa4d3ea186ac64401b93b3e5bc6b74f 241 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 208 6.7E-16 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS14160 1fa4d3ea186ac64401b93b3e5bc6b74f 241 Gene3D G3DSA:3.40.50.1860 144 210 7.2E-4 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS33675 0f7747e61590d7e9f9ad51365ed5af51 105 Pfam PF00355 Rieske [2Fe-2S] domain 4 92 3.0E-20 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS33675 0f7747e61590d7e9f9ad51365ed5af51 105 Gene3D G3DSA:2.102.10.10 2 104 5.0E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS33675 0f7747e61590d7e9f9ad51365ed5af51 105 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 4 103 1.3E-55 T 06-07-2017 IPR012747 MocE Rieske [2Fe-2S] CDO28_RS33675 0f7747e61590d7e9f9ad51365ed5af51 105 SUPERFAMILY SSF50022 3 104 5.37E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS31530 5ac076cec3081779424ee239d25e4d80 242 Gene3D G3DSA:3.40.50.300 4 224 7.1E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31530 5ac076cec3081779424ee239d25e4d80 242 Pfam PF00005 ABC transporter 19 162 1.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31530 5ac076cec3081779424ee239d25e4d80 242 SMART SM00382 28 210 6.2E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31530 5ac076cec3081779424ee239d25e4d80 242 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 4 234 4.2E-108 T 06-07-2017 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system CDO28_RS31530 5ac076cec3081779424ee239d25e4d80 242 SUPERFAMILY SSF52540 4 224 8.21E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07610 79dd28a00f7b58ef88f5ce041e48fb94 146 Pfam PF11164 Protein of unknown function (DUF2948) 4 142 2.1E-51 T 06-07-2017 IPR021335 Protein of unknown function DUF2948 CDO28_RS19980 c75356925a3540913bfb12118f4145e2 266 Gene3D G3DSA:1.10.3720.10 7 257 5.8E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19980 c75356925a3540913bfb12118f4145e2 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 257 2.7E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19980 c75356925a3540913bfb12118f4145e2 266 SUPERFAMILY SSF161098 6 257 7.01E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS01045 86e8fff3750b412f32fd653eb14d5b1d 164 Gene3D G3DSA:3.30.70.640 5 159 2.5E-68 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CDO28_RS01045 86e8fff3750b412f32fd653eb14d5b1d 164 SUPERFAMILY SSF55040 13 157 5.1E-61 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CDO28_RS01045 86e8fff3750b412f32fd653eb14d5b1d 164 Pfam PF01967 MoaC family 17 152 8.4E-56 T 06-07-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CDO28_RS01045 86e8fff3750b412f32fd653eb14d5b1d 164 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 4 160 37.777 T 06-07-2017 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type Reactome: R-HSA-947581 CDO28_RS01045 86e8fff3750b412f32fd653eb14d5b1d 164 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 6 154 1.1E-63 T 06-07-2017 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 CDO28_RS13195 4f3002cdcba7c1ac88f548896db9b20b 67 Pfam PF04325 Protein of unknown function (DUF465) 14 58 1.4E-12 T 06-07-2017 IPR007420 Protein of unknown function DUF465 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 Gene3D G3DSA:3.10.310.10 133 294 2.9E-38 T 06-07-2017 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 SUPERFAMILY SSF54506 4 304 6.47E-65 T 06-07-2017 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 Gene3D G3DSA:3.10.310.10 2 126 2.4E-37 T 06-07-2017 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 305 8.4E-65 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 PIRSF PIRSF016184 1 305 5.2E-79 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS13275 76d2288356e588285b2d2a932f9522c0 305 Pfam PF02567 Phenazine biosynthesis-like protein 9 301 8.0E-57 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 Hamap MF_00109 Shikimate kinase [aroK]. 22 187 27.891 T 06-07-2017 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 Pfam PF01202 Shikimate kinase 31 186 5.1E-49 T 06-07-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 PRINTS PR01100 Shikimate kinase family signature 77 85 1.2E-19 T 06-07-2017 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 PRINTS PR01100 Shikimate kinase family signature 25 40 1.2E-19 T 06-07-2017 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 PRINTS PR01100 Shikimate kinase family signature 116 133 1.2E-19 T 06-07-2017 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 PRINTS PR01100 Shikimate kinase family signature 95 104 1.2E-19 T 06-07-2017 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 PRINTS PR01100 Shikimate kinase family signature 49 62 1.2E-19 T 06-07-2017 CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 SUPERFAMILY SSF52540 22 186 8.62E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13740 1f9ab78ee9e308f7452323aea821c268 192 Gene3D G3DSA:3.40.50.300 22 189 1.0E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 Pfam PF03466 LysR substrate binding domain 92 290 1.4E-27 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 Gene3D G3DSA:1.10.10.10 4 85 2.9E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.0E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 Gene3D G3DSA:3.40.190.10 94 178 3.0E-23 T 06-07-2017 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 SUPERFAMILY SSF53850 93 294 4.89E-29 T 06-07-2017 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 Gene3D G3DSA:3.40.190.10 179 259 5.5E-13 T 06-07-2017 CDO28_RS14685 77534da993eddf9fb1a0a31b2e74c7e2 347 SUPERFAMILY SSF46785 6 113 2.39E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 Pfam PF00171 Aldehyde dehydrogenase family 43 487 3.8E-154 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 Pfam PF00171 Aldehyde dehydrogenase family 537 762 6.5E-40 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 Gene3D G3DSA:3.40.605.10 518 759 4.3E-49 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 PIRSF PIRSF036490 1 794 0.0 T 06-07-2017 IPR011408 Aldehyde dehydrogenase CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 SUPERFAMILY SSF53720 515 761 1.31E-47 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 SUPERFAMILY SSF53720 32 490 2.36E-153 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 Gene3D G3DSA:3.40.309.10 280 464 2.2E-60 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS26770 0fbe01a078318609cf0f72f17c45b438 794 Gene3D G3DSA:3.40.605.10 33 279 2.6E-93 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS19320 7cde35f08a44b9ad4d1130a5d6f5511a 149 SUPERFAMILY SSF54593 7 144 3.3E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS19320 7cde35f08a44b9ad4d1130a5d6f5511a 149 Gene3D G3DSA:3.10.180.10 12 146 2.4E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS19320 7cde35f08a44b9ad4d1130a5d6f5511a 149 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 126 6.2E-6 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 81 6.7E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 Gene3D G3DSA:1.10.10.10 5 82 3.2E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 6.2E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 6.2E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 Gene3D G3DSA:1.20.120.530 97 228 7.0E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 SUPERFAMILY SSF48008 101 224 1.86E-21 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 SMART SM00345 23 81 4.4E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 SMART SM00895 91 217 3.8E-11 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 SUPERFAMILY SSF46785 18 85 1.05E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31865 bbf10f75b0e7d1e647325e47ebf7b70b 236 Pfam PF07729 FCD domain 93 216 4.4E-18 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 SUPERFAMILY SSF48498 102 231 6.67E-39 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 Gene3D G3DSA:1.10.10.60 12 59 8.0E-20 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 2.5E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 Gene3D G3DSA:1.10.357.10 60 232 5.2E-53 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 Pfam PF09209 Domain of unknown function (DUF1956) 107 226 1.6E-38 T 06-07-2017 IPR015292 Transcription regulator YbiH, C-terminal CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 5.8E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 5.8E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS27105 baa1b4949cb049be9326db6cdd9462fc 234 SUPERFAMILY SSF46689 12 80 8.21E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 Gene3D G3DSA:3.40.190.10 84 170 1.6E-4 T 06-07-2017 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 Gene3D G3DSA:3.40.190.10 171 265 4.0E-24 T 06-07-2017 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 SUPERFAMILY SSF46785 5 87 3.1E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 5.2E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.8E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 SUPERFAMILY SSF53850 91 296 9.59E-42 T 06-07-2017 CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 Pfam PF03466 LysR substrate binding domain 90 295 9.3E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19565 da442a01a7e66a858c4fa129474293ac 297 Gene3D G3DSA:1.10.10.10 5 79 2.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33705 6bb6e277e2d87b4812cba440d55128ae 256 SUPERFAMILY SSF51161 51 90 3.53E-35 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS33705 6bb6e277e2d87b4812cba440d55128ae 256 SUPERFAMILY SSF51161 128 210 3.53E-35 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS33705 6bb6e277e2d87b4812cba440d55128ae 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 139 173 1.3E-8 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS33705 6bb6e277e2d87b4812cba440d55128ae 256 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 147 175 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS33705 6bb6e277e2d87b4812cba440d55128ae 256 Gene3D G3DSA:2.160.10.10 51 212 5.3E-42 T 06-07-2017 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 249 1.5E-41 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 SUPERFAMILY SSF53067 260 508 2.43E-41 T 06-07-2017 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 295 457 3.0E-21 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 Gene3D G3DSA:3.30.420.40 2 250 5.0E-47 T 06-07-2017 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 SUPERFAMILY SSF53067 5 251 1.2E-53 T 06-07-2017 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 Gene3D G3DSA:3.30.420.40 267 500 9.6E-33 T 06-07-2017 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 PIRSF PIRSF000538 2 513 3.4E-84 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS16080 02994aa29b33b7fa712d161ce72694e3 525 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 373 393 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS33110 c1922748fe5b6de1b3c79067cf48ae96 144 Pfam PF07681 DoxX 11 105 1.6E-19 T 06-07-2017 IPR032808 DoxX family CDO28_RS24980 b921c9e0a191c7f7f36dc71abd41b2fa 363 SUPERFAMILY SSF51395 1 357 9.16E-111 T 06-07-2017 CDO28_RS24980 b921c9e0a191c7f7f36dc71abd41b2fa 363 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 332 1.1E-76 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDO28_RS24980 b921c9e0a191c7f7f36dc71abd41b2fa 363 Gene3D G3DSA:3.20.20.70 5 354 1.3E-115 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS03565 95210f435297797eeaf687afc41a7a08 101 Gene3D G3DSA:4.10.830.10 41 101 1.5E-28 T 06-07-2017 CDO28_RS03565 95210f435297797eeaf687afc41a7a08 101 SUPERFAMILY SSF57716 2 101 1.66E-36 T 06-07-2017 CDO28_RS03565 95210f435297797eeaf687afc41a7a08 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 3.6E-23 T 06-07-2017 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03565 95210f435297797eeaf687afc41a7a08 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.084 T 06-07-2017 IPR023036 Ribosomal protein S14, bacterial/plastid CDO28_RS03565 95210f435297797eeaf687afc41a7a08 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 06-07-2017 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 Pfam PF00994 Probable molybdopterin binding domain 16 157 3.5E-39 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 SUPERFAMILY SSF53218 6 171 6.28E-48 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 PIRSF PIRSF006443 2 168 2.6E-62 T 06-07-2017 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 153 2.6E-36 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 171 1.8E-78 T 06-07-2017 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 Gene3D G3DSA:3.40.980.10 6 170 7.2E-51 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 SMART SM00852 16 160 2.3E-34 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS06370 f09fc0796389d678eba8ed9c2626a693 180 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 74 87 - T 06-07-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CDO28_RS30245 bf64a861a70bc8fcf61c54b02bf786fa 174 Gene3D G3DSA:1.20.1260.10 44 152 2.1E-4 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS30245 bf64a861a70bc8fcf61c54b02bf786fa 174 Pfam PF13628 Domain of unknown function (DUF4142) 28 168 4.2E-38 T 06-07-2017 IPR025419 Domain of unknown function DUF4142 CDO28_RS05700 a964d36b7fbb1e17f10045306f45bcdc 257 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 1 256 41.926 T 06-07-2017 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CDO28_RS05700 a964d36b7fbb1e17f10045306f45bcdc 257 Pfam PF13649 Methyltransferase domain 36 123 5.8E-11 T 06-07-2017 CDO28_RS05700 a964d36b7fbb1e17f10045306f45bcdc 257 SUPERFAMILY SSF53335 4 256 3.98E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05700 a964d36b7fbb1e17f10045306f45bcdc 257 Gene3D G3DSA:3.40.50.150 3 145 3.2E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05700 a964d36b7fbb1e17f10045306f45bcdc 257 Gene3D G3DSA:1.10.150.290 181 236 7.0E-30 T 06-07-2017 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CDO28_RS13920 2227886695d771e5f68855bc9c64d668 263 Gene3D G3DSA:1.20.1540.10 17 219 9.3E-41 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDO28_RS13920 2227886695d771e5f68855bc9c64d668 263 SUPERFAMILY SSF144091 14 220 5.1E-43 T 06-07-2017 CDO28_RS13920 2227886695d771e5f68855bc9c64d668 263 Pfam PF01694 Rhomboid family 75 219 1.2E-38 T 06-07-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDO28_RS02325 c70d7ff495a2dcff2fccd5561279aa4f 340 Pfam PF13439 Glycosyltransferase Family 4 12 148 3.8E-8 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS02325 c70d7ff495a2dcff2fccd5561279aa4f 340 SUPERFAMILY SSF53756 3 336 2.64E-70 T 06-07-2017 CDO28_RS02325 c70d7ff495a2dcff2fccd5561279aa4f 340 Gene3D G3DSA:3.40.50.2000 158 316 3.7E-33 T 06-07-2017 CDO28_RS02325 c70d7ff495a2dcff2fccd5561279aa4f 340 Pfam PF00534 Glycosyl transferases group 1 158 316 3.7E-33 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 SMART SM00895 89 212 5.9E-14 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 SUPERFAMILY SSF46785 13 83 3.08E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 Gene3D G3DSA:1.20.120.530 85 225 4.7E-33 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 Gene3D G3DSA:1.10.10.10 7 80 4.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 SUPERFAMILY SSF48008 85 221 2.04E-22 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 2.3E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 Pfam PF07729 FCD domain 89 210 1.2E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS17880 0b0ddab2ff3232d28f8be28aaacc7be2 231 SMART SM00345 21 79 9.0E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 SUPERFAMILY SSF140990 407 600 6.54E-67 T 06-07-2017 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 SMART SM00382 187 327 1.3E-23 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 324 1.9E-42 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Pfam PF06480 FtsH Extracellular 9 94 3.5E-8 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Gene3D G3DSA:3.40.50.300 153 333 4.4E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Pfam PF01434 Peptidase family M41 385 597 5.4E-71 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Gene3D G3DSA:1.10.8.60 334 400 1.2E-26 T 06-07-2017 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 605 35.498 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 598 4.6E-209 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 CDO28_RS21745 4eb74dc1b1870715825a492e6668de38 613 SUPERFAMILY SSF52540 151 396 4.28E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04400 886f9b921876ec6953ccc9bab4af02cd 711 Pfam PF03030 Inorganic H+ pyrophosphatase 13 705 4.1E-252 T 06-07-2017 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 CDO28_RS04400 886f9b921876ec6953ccc9bab4af02cd 711 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 711 25.025 T 06-07-2017 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 CDO28_RS04400 886f9b921876ec6953ccc9bab4af02cd 711 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 7 711 1.9E-265 T 06-07-2017 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 CDO28_RS04400 886f9b921876ec6953ccc9bab4af02cd 711 PIRSF PIRSF001265 1 711 8.5E-238 T 06-07-2017 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 CDO28_RS06305 9d5275338cc9325fe78a2ec047c82b13 172 Pfam PF04463 Protein of unknown function (DUF523) 5 151 8.1E-43 T 06-07-2017 IPR007553 Domain of unknown function DUF523 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 416 1.5E-203 T 06-07-2017 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 SMART SM00928 330 375 1.0E-24 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 215 1.0E-49 T 06-07-2017 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 414 3.0E-30 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 SUPERFAMILY SSF142984 240 325 2.62E-23 T 06-07-2017 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 SUPERFAMILY SSF142019 3 239 8.89E-85 T 06-07-2017 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 SUPERFAMILY SSF140490 326 420 3.27E-36 T 06-07-2017 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 Pfam PF10531 SLBB domain 242 291 3.6E-8 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04105 1cb2bc230d64aec1a72512083edcdcd9 434 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 343 354 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20105 b20bc464fff5307da5fa9b20dd08f397 364 SUPERFAMILY SSF101898 269 326 4.18E-12 T 06-07-2017 CDO28_RS20105 b20bc464fff5307da5fa9b20dd08f397 364 SUPERFAMILY SSF101898 46 216 4.18E-12 T 06-07-2017 CDO28_RS20105 b20bc464fff5307da5fa9b20dd08f397 364 Gene3D G3DSA:2.120.10.30 270 328 3.5E-11 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS20105 b20bc464fff5307da5fa9b20dd08f397 364 Gene3D G3DSA:2.120.10.30 50 76 3.5E-11 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS20105 b20bc464fff5307da5fa9b20dd08f397 364 Gene3D G3DSA:2.120.10.30 145 231 3.5E-11 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 SUPERFAMILY SSF53850 87 288 4.5E-31 T 06-07-2017 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 SUPERFAMILY SSF46785 3 85 1.53E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 Gene3D G3DSA:1.10.10.10 2 84 1.3E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 Pfam PF03466 LysR substrate binding domain 86 287 1.8E-28 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 Gene3D G3DSA:3.40.190.10 87 179 3.5E-13 T 06-07-2017 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 Gene3D G3DSA:3.40.190.10 180 262 6.7E-14 T 06-07-2017 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 1.3E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12005 9ec91f59c3d654e694890a8de6ca8bd8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.7E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS33825 2d6773797ff4b42cbdd8570cee41bf7b 416 SMART SM01007 28 223 1.1E-33 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS33825 2d6773797ff4b42cbdd8570cee41bf7b 416 SUPERFAMILY SSF53639 25 223 5.1E-34 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS33825 2d6773797ff4b42cbdd8570cee41bf7b 416 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 30 222 1.0E-25 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS33825 2d6773797ff4b42cbdd8570cee41bf7b 416 Gene3D G3DSA:3.40.225.10 29 224 3.6E-29 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS23485 ab79c944b4ca17b069566c9a83669a51 188 Gene3D G3DSA:3.40.190.10 1 39 4.3E-6 T 06-07-2017 CDO28_RS23485 ab79c944b4ca17b069566c9a83669a51 188 Pfam PF03466 LysR substrate binding domain 1 155 4.0E-21 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23485 ab79c944b4ca17b069566c9a83669a51 188 SUPERFAMILY SSF53850 1 156 6.76E-21 T 06-07-2017 CDO28_RS23485 ab79c944b4ca17b069566c9a83669a51 188 Gene3D G3DSA:3.40.190.10 40 126 2.0E-15 T 06-07-2017 CDO28_RS11725 301d85606e22055283fa28a573d85010 198 Gene3D G3DSA:3.30.1060.10 21 171 1.4E-55 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS11725 301d85606e22055283fa28a573d85010 198 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 23 178 32.604 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS11725 301d85606e22055283fa28a573d85010 198 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 25 171 1.1E-44 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS11725 301d85606e22055283fa28a573d85010 198 Pfam PF01625 Peptide methionine sulfoxide reductase 26 171 3.3E-48 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS11725 301d85606e22055283fa28a573d85010 198 SUPERFAMILY SSF55068 9 182 3.27E-61 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 PIRSF PIRSF001365 4 303 6.1E-62 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 SMART SM01130 6 298 4.7E-63 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 Gene3D G3DSA:3.20.20.70 7 297 1.5E-85 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 5.2E-9 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 5.2E-9 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 5.2E-9 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 5.2E-9 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 SUPERFAMILY SSF51569 3 297 1.26E-70 T 06-07-2017 CDO28_RS29430 6186d2990d661b787c060acd65cde810 304 Pfam PF00701 Dihydrodipicolinate synthetase family 7 294 1.9E-44 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS15865 ac7585f7889c33984e73de0d6435f8e3 559 Pfam PF10081 Alpha/beta-hydrolase family 264 552 3.7E-118 T 06-07-2017 IPR027787 Alpha/beta-hydrolase, catalytic domain CDO28_RS15865 ac7585f7889c33984e73de0d6435f8e3 559 Pfam PF15420 Alpha/beta-hydrolase family N-terminus 40 247 6.8E-68 T 06-07-2017 IPR027788 Alpha/beta-hydrolase, N-terminal domain CDO28_RS15865 ac7585f7889c33984e73de0d6435f8e3 559 PIRSF PIRSF007542 1 559 2.1E-272 T 06-07-2017 IPR012037 Alpha/beta-hydrolase family CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 SUPERFAMILY SSF46689 301 353 9.67E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 Gene3D G3DSA:1.10.10.60 302 353 1.9E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 SMART SM00342 267 350 1.0E-16 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 Gene3D G3DSA:1.10.10.60 251 301 2.2E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 Pfam PF14525 AraC-binding-like domain 81 204 8.6E-10 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS32815 368102355af67382a6850a5baaa97d02 382 Pfam PF12833 Helix-turn-helix domain 273 351 1.6E-15 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS19355 869a84b255d5da6a17bf203a23da3aae 145 SUPERFAMILY SSF46785 3 136 9.48E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19355 869a84b255d5da6a17bf203a23da3aae 145 Pfam PF02082 Transcriptional regulator 1 81 1.9E-20 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS19355 869a84b255d5da6a17bf203a23da3aae 145 Gene3D G3DSA:1.10.10.10 1 137 3.8E-40 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 1.7E-94 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 06-07-2017 IPR033135 ClpP, histidine active site CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 Pfam PF00574 Clp protease 21 200 1.8E-86 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 41.596 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 SUPERFAMILY SSF52096 18 204 9.09E-75 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 Gene3D G3DSA:3.90.226.10 11 201 2.9E-86 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 4.3E-50 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 4.3E-50 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 4.3E-50 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 4.3E-50 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 4.3E-50 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS04205 962626396b5d6d06a8b8c317bde14f89 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 06-07-2017 IPR018215 ClpP, Ser active site CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 164 206 7.9E-16 T 06-07-2017 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 SUPERFAMILY SSF50475 14 206 5.8E-67 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 Gene3D G3DSA:2.30.110.10 14 206 2.4E-80 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 14 206 3.1E-70 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 174 187 - T 06-07-2017 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 PIRSF PIRSF000190 3 206 1.5E-71 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 5 206 37.877 T 06-07-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS06100 7eed71fc9073dee42f54934c3cb0b685 206 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 26 111 1.5E-27 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 Gene3D G3DSA:3.90.650.10 177 344 9.7E-65 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 Gene3D G3DSA:3.30.1330.10 24 172 9.4E-62 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 166 4.8E-15 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 SUPERFAMILY SSF56042 176 344 2.09E-58 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 180 344 1.1E-37 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 339 2.3E-134 T 06-07-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 SUPERFAMILY SSF55326 9 172 1.11E-49 T 06-07-2017 CDO28_RS04575 ec0d3249dbab70ad30050bbc0b6d95e2 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 9 350 45.509 T 06-07-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDO28_RS32725 3cb9208963edd8753a76dadbedbaf7d2 336 TIGRFAM TIGR02994 ectoine_eutE: ectoine utilization protein EutE 7 331 7.2E-198 T 06-07-2017 IPR014336 N-alpha-acetyl diaminobutyrate deacetylase DoeB CDO28_RS32725 3cb9208963edd8753a76dadbedbaf7d2 336 SUPERFAMILY SSF53187 8 327 1.42E-57 T 06-07-2017 CDO28_RS32725 3cb9208963edd8753a76dadbedbaf7d2 336 Gene3D G3DSA:3.40.630.10 48 241 9.5E-32 T 06-07-2017 CDO28_RS32725 3cb9208963edd8753a76dadbedbaf7d2 336 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 52 331 2.7E-86 T 06-07-2017 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 CDO28_RS32725 3cb9208963edd8753a76dadbedbaf7d2 336 PIRSF PIRSF039012 4 335 4.4E-86 T 06-07-2017 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 255 30.743 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 Gene3D G3DSA:2.40.290.10 5 151 4.2E-10 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 TIGRFAM TIGR02772 Ku_bact: Ku protein 4 258 3.9E-101 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 SUPERFAMILY SSF100939 3 259 7.85E-45 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 173 3.6E-33 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 SMART SM00559 54 184 1.1E-17 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS29725 e685aab77dbdd1fffdcc80a4739d6c15 294 PIRSF PIRSF006493 1 294 3.4E-105 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS06040 5bf63fdae7969add7ea49a1b61dd231d 350 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 110 132 - T 06-07-2017 IPR030470 UbiA prenyltransferase conserved site CDO28_RS06040 5bf63fdae7969add7ea49a1b61dd231d 350 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 56 340 19.388 T 06-07-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CDO28_RS06040 5bf63fdae7969add7ea49a1b61dd231d 350 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 58 338 4.5E-93 T 06-07-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CDO28_RS06040 5bf63fdae7969add7ea49a1b61dd231d 350 Pfam PF01040 UbiA prenyltransferase family 72 313 3.5E-54 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 CDO28_RS28700 788c3346aea8a989f1b2b659bc2ed6ab 579 SUPERFAMILY SSF143975 6 380 1.31E-127 T 06-07-2017 CDO28_RS28700 788c3346aea8a989f1b2b659bc2ed6ab 579 Pfam PF00920 Dehydratase family 44 561 1.3E-182 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS28700 788c3346aea8a989f1b2b659bc2ed6ab 579 SUPERFAMILY SSF52016 381 566 6.36E-58 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS10770 1263296ccf2d47d9c077b8c2dc1e1d38 273 SUPERFAMILY SSF53955 22 272 4.22E-71 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS10770 1263296ccf2d47d9c077b8c2dc1e1d38 273 Pfam PF13406 Transglycosylase SLT domain 36 239 2.0E-70 T 06-07-2017 IPR031304 Transglycosylase SLT domain 2 CDO28_RS10770 1263296ccf2d47d9c077b8c2dc1e1d38 273 Gene3D G3DSA:1.10.530.10 216 238 2.1E-24 T 06-07-2017 CDO28_RS10770 1263296ccf2d47d9c077b8c2dc1e1d38 273 Gene3D G3DSA:1.10.530.10 80 136 2.1E-24 T 06-07-2017 CDO28_RS20515 2a5dcb073a7f620244e41c9bd1dd473a 370 SUPERFAMILY SSF55729 163 351 8.16E-57 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS20515 2a5dcb073a7f620244e41c9bd1dd473a 370 Gene3D G3DSA:3.40.630.30 168 355 2.7E-60 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS20515 2a5dcb073a7f620244e41c9bd1dd473a 370 Pfam PF13523 Acetyltransferase (GNAT) domain 196 338 1.0E-45 T 06-07-2017 CDO28_RS20515 2a5dcb073a7f620244e41c9bd1dd473a 370 SMART SM01006 190 237 1.3E-10 T 06-07-2017 IPR019432 Siderophore biosynthesis protein, conserved domain CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 Gene3D G3DSA:3.30.870.10 418 503 1.4E-11 T 06-07-2017 CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 Gene3D G3DSA:3.30.870.10 185 301 5.5E-12 T 06-07-2017 CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 SUPERFAMILY SSF56024 175 303 3.73E-12 T 06-07-2017 CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 Pfam PF13091 PLD-like domain 434 490 8.9E-11 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 Pfam PF13091 PLD-like domain 177 297 4.7E-10 T 06-07-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 CDO28_RS19330 76950392f59dc65d5d5fd7cbd977c5c8 559 SUPERFAMILY SSF56024 435 502 8.24E-11 T 06-07-2017 CDO28_RS07355 24d7d75eaf0797cd5a0e29073c25c867 241 SUPERFAMILY SSF117143 77 138 3.66E-13 T 06-07-2017 CDO28_RS07355 24d7d75eaf0797cd5a0e29073c25c867 241 Pfam PF00460 Flagella basal body rod protein 5 35 1.9E-9 T 06-07-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CDO28_RS07355 24d7d75eaf0797cd5a0e29073c25c867 241 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 119 4.0E-36 T 06-07-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G CDO28_RS07355 24d7d75eaf0797cd5a0e29073c25c867 241 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 217 8.4E-56 T 06-07-2017 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 CDO28_RS07355 24d7d75eaf0797cd5a0e29073c25c867 241 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 177 234 3.2E-11 T 06-07-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CDO28_RS11655 70f55c5e0425f4df5e9de19cc9ad6080 545 Pfam PF07219 HemY protein N-terminus 26 133 1.9E-25 T 06-07-2017 IPR010817 HemY, N-terminal CDO28_RS11655 70f55c5e0425f4df5e9de19cc9ad6080 545 PIRSF PIRSF031802 1 545 2.8E-190 T 06-07-2017 IPR016982 Uncharacterised conserved protein UCP031802 CDO28_RS11655 70f55c5e0425f4df5e9de19cc9ad6080 545 Gene3D G3DSA:1.25.40.10 119 368 2.9E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11655 70f55c5e0425f4df5e9de19cc9ad6080 545 SUPERFAMILY SSF48452 244 361 1.63E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11735 007a312b98d13e4c65b64108412d4619 366 Gene3D G3DSA:3.30.360.10 142 347 2.1E-30 T 06-07-2017 CDO28_RS11735 007a312b98d13e4c65b64108412d4619 366 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 117 2.2E-19 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS11735 007a312b98d13e4c65b64108412d4619 366 SUPERFAMILY SSF51735 3 152 1.26E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11735 007a312b98d13e4c65b64108412d4619 366 SUPERFAMILY SSF55347 129 296 5.89E-31 T 06-07-2017 CDO28_RS11735 007a312b98d13e4c65b64108412d4619 366 Gene3D G3DSA:3.40.50.720 1 141 9.4E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 SUPERFAMILY SSF53807 21 456 3.92E-130 T 06-07-2017 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 130 144 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 Gene3D G3DSA:3.40.50.1980 182 290 8.9E-41 T 06-07-2017 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 8 458 5.7E-189 T 06-07-2017 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 45 441 8.3E-101 T 06-07-2017 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 Gene3D G3DSA:3.40.50.1980 324 460 3.6E-44 T 06-07-2017 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 Gene3D G3DSA:3.40.50.1980 45 181 2.4E-42 T 06-07-2017 CDO28_RS23020 80d97b1715a64709919d88c03a7299cf 476 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 63 70 - T 06-07-2017 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 15 332 1.7E-132 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 SUPERFAMILY SSF51569 11 335 9.82E-135 T 06-07-2017 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 200 219 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 132 146 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 162 181 3.5E-55 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 Gene3D G3DSA:3.20.20.70 11 336 2.8E-139 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 PIRSF PIRSF001415 7 337 1.5E-138 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 SMART SM01004 12 334 5.0E-223 T 06-07-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS04470 0241223f3d745e85b77af81a209cec2c 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 06-07-2017 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDO28_RS27620 964cc4de204c7ddaf69e2e0a1d6c9dc7 424 TIGRFAM TIGR02335 hydr_PhnA: phosphonoacetate hydrolase 10 412 4.6E-162 T 06-07-2017 IPR012710 Phosphonoacetate hydrolase GO:0047400 KEGG: 00440+3.11.1.2 CDO28_RS27620 964cc4de204c7ddaf69e2e0a1d6c9dc7 424 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 24 378 4.6E-30 T 06-07-2017 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 CDO28_RS27620 964cc4de204c7ddaf69e2e0a1d6c9dc7 424 Gene3D G3DSA:3.40.720.10 8 307 5.4E-70 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS27620 964cc4de204c7ddaf69e2e0a1d6c9dc7 424 SUPERFAMILY SSF53649 8 392 3.6E-101 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS28520 84587c46bbf28b17f24d686acc138239 199 SUPERFAMILY SSF51182 10 188 1.17E-33 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS28520 84587c46bbf28b17f24d686acc138239 199 Hamap MF_01410 Glucose-6-phosphate isomerase [pgiA]. 3 190 50.065 T 06-07-2017 IPR016758 Glucose-6-phosphate isomerase, archaea/bacteria GO:0004347|GO:0005506 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS28520 84587c46bbf28b17f24d686acc138239 199 PIRSF PIRSF019325 1 198 6.2E-79 T 06-07-2017 IPR016758 Glucose-6-phosphate isomerase, archaea/bacteria GO:0004347|GO:0005506 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS28520 84587c46bbf28b17f24d686acc138239 199 Pfam PF06560 Glucose-6-phosphate isomerase (GPI) 27 188 6.1E-69 T 06-07-2017 IPR010551 Glucose-6-phosphate isomerase, prokaryote GO:0004347|GO:0005737|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 CDO28_RS28520 84587c46bbf28b17f24d686acc138239 199 Gene3D G3DSA:2.60.120.10 7 192 6.5E-38 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS22770 36d9f5cbefa5ad89654381c1ac45cf4a 243 SUPERFAMILY SSF46626 21 173 1.78E-25 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22770 36d9f5cbefa5ad89654381c1ac45cf4a 243 SUPERFAMILY SSF46626 216 227 1.78E-25 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22770 36d9f5cbefa5ad89654381c1ac45cf4a 243 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 231 3.0E-99 T 06-07-2017 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO CDO28_RS22770 36d9f5cbefa5ad89654381c1ac45cf4a 243 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 7 238 1.2E-120 T 06-07-2017 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO CDO28_RS22770 36d9f5cbefa5ad89654381c1ac45cf4a 243 Gene3D G3DSA:1.10.760.10 19 228 1.7E-32 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22585 36d9f5cbefa5ad89654381c1ac45cf4a 243 SUPERFAMILY SSF46626 21 173 1.78E-25 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22585 36d9f5cbefa5ad89654381c1ac45cf4a 243 SUPERFAMILY SSF46626 216 227 1.78E-25 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22585 36d9f5cbefa5ad89654381c1ac45cf4a 243 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 231 3.0E-99 T 06-07-2017 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO CDO28_RS22585 36d9f5cbefa5ad89654381c1ac45cf4a 243 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 7 238 1.2E-120 T 06-07-2017 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO CDO28_RS22585 36d9f5cbefa5ad89654381c1ac45cf4a 243 Gene3D G3DSA:1.10.760.10 19 228 1.7E-32 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS05050 188d289ebc0c5a5640643a888c98f5df 283 Pfam PF03473 MOSC domain 137 266 2.5E-26 T 06-07-2017 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 CDO28_RS05050 188d289ebc0c5a5640643a888c98f5df 283 SUPERFAMILY SSF50800 2 51 4.08E-13 T 06-07-2017 IPR011037 Pyruvate kinase-like, insert domain CDO28_RS05050 188d289ebc0c5a5640643a888c98f5df 283 SUPERFAMILY SSF50800 146 268 4.08E-13 T 06-07-2017 IPR011037 Pyruvate kinase-like, insert domain CDO28_RS05050 188d289ebc0c5a5640643a888c98f5df 283 SUPERFAMILY SSF141673 3 126 6.54E-21 T 06-07-2017 CDO28_RS05050 188d289ebc0c5a5640643a888c98f5df 283 Pfam PF03476 MOSC N-terminal beta barrel domain 2 112 9.8E-16 T 06-07-2017 IPR005303 MOSC, N-terminal beta barrel CDO28_RS17035 627c5ada5bac472061057e42c6516c5f 346 Gene3D G3DSA:3.40.50.300 4 239 2.8E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17035 627c5ada5bac472061057e42c6516c5f 346 SMART SM00382 34 221 1.0E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17035 627c5ada5bac472061057e42c6516c5f 346 SUPERFAMILY SSF52540 5 249 9.25E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17035 627c5ada5bac472061057e42c6516c5f 346 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17035 627c5ada5bac472061057e42c6516c5f 346 Pfam PF00005 ABC transporter 26 171 3.2E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14985 c997e796baa6d6426a980761ce819cfd 436 SUPERFAMILY SSF53850 24 408 6.73E-88 T 06-07-2017 CDO28_RS14985 c997e796baa6d6426a980761ce819cfd 436 Gene3D G3DSA:3.40.190.10 153 352 1.1E-55 T 06-07-2017 CDO28_RS14985 c997e796baa6d6426a980761ce819cfd 436 Gene3D G3DSA:3.40.190.10 23 152 3.9E-4 T 06-07-2017 CDO28_RS14985 c997e796baa6d6426a980761ce819cfd 436 Pfam PF01547 Bacterial extracellular solute-binding protein 38 325 6.1E-57 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS34485 d7ee50a895c41ad586bd2135850f92f4 332 SMART SM00382 49 233 2.4E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS34485 d7ee50a895c41ad586bd2135850f92f4 332 Gene3D G3DSA:3.40.50.300 34 255 9.8E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34485 d7ee50a895c41ad586bd2135850f92f4 332 SUPERFAMILY SSF52540 36 256 1.81E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34485 d7ee50a895c41ad586bd2135850f92f4 332 Pfam PF00005 ABC transporter 41 184 3.9E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 SUPERFAMILY SSF48452 440 594 8.91E-24 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 SMART SM00044 1 144 0.0087 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 Gene3D G3DSA:1.25.40.10 387 595 7.3E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 SUPERFAMILY SSF55073 2 165 9.58E-40 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 Pfam PF14559 Tetratricopeptide repeat 468 526 6.4E-7 T 06-07-2017 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 8 136 2.2E-10 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 Pfam PF13432 Tetratricopeptide repeat 532 578 0.0016 T 06-07-2017 CDO28_RS32080 0b4fe2a1f350a313181da5e9600ed179 637 Gene3D G3DSA:3.30.70.1230 6 166 5.1E-25 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS03975 c495c12a77490ce9666f65cbbbcc64cc 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 11.954 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03975 c495c12a77490ce9666f65cbbbcc64cc 55 Pfam PF00471 Ribosomal protein L33 7 53 2.1E-13 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03975 c495c12a77490ce9666f65cbbbcc64cc 55 SUPERFAMILY SSF57829 1 53 5.92E-17 T 06-07-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 CDO28_RS03975 c495c12a77490ce9666f65cbbbcc64cc 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 3.0E-18 T 06-07-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03975 c495c12a77490ce9666f65cbbbcc64cc 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 06-07-2017 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS26880 1788a92262b87f661b46901decd63148 477 Pfam PF07364 Metallopeptidase family M81 2 276 2.5E-100 T 06-07-2017 IPR015995 Microcystin LR degradation protein MlrC, N-terminal CDO28_RS26880 1788a92262b87f661b46901decd63148 477 Pfam PF07171 MlrC C-terminus 289 449 2.0E-47 T 06-07-2017 IPR010799 Microcystin LR degradation protein MlrC, C-terminal CDO28_RS26880 1788a92262b87f661b46901decd63148 477 PIRSF PIRSF012702 1 472 4.7E-146 T 06-07-2017 IPR009197 Microcystin LR degradation protein MlrC CDO28_RS11465 76712524029dcdcc80bb8669782a59d0 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 184 2.2E-77 T 06-07-2017 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CDO28_RS11465 76712524029dcdcc80bb8669782a59d0 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 42.432 T 06-07-2017 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CDO28_RS11465 76712524029dcdcc80bb8669782a59d0 201 Pfam PF00694 Aconitase C-terminal domain 1 123 1.6E-37 T 06-07-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11465 76712524029dcdcc80bb8669782a59d0 201 Gene3D G3DSA:3.20.19.10 3 193 1.6E-51 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS11465 76712524029dcdcc80bb8669782a59d0 201 SUPERFAMILY SSF52016 1 191 3.14E-59 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 SUPERFAMILY SSF54849 138 196 7.02E-21 T 06-07-2017 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 Gene3D G3DSA:1.10.560.10 367 519 1.0E-44 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 SUPERFAMILY SSF48592 406 522 7.08E-79 T 06-07-2017 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 SUPERFAMILY SSF48592 7 134 7.08E-79 T 06-07-2017 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 Gene3D G3DSA:3.50.7.10 189 366 8.7E-104 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 PRINTS PR00298 60kDa chaperonin signature 398 419 2.9E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 PRINTS PR00298 60kDa chaperonin signature 268 291 2.9E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 PRINTS PR00298 60kDa chaperonin signature 83 110 2.9E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 PRINTS PR00298 60kDa chaperonin signature 350 375 2.9E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 PRINTS PR00298 60kDa chaperonin signature 27 53 2.9E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 SUPERFAMILY SSF52029 184 376 2.62E-87 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 42.634 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 Gene3D G3DSA:1.10.560.10 4 188 1.8E-46 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 4 528 6.6E-264 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS21710 678ada8ff9c4ed84353fe07ba871b26e 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 2.2E-102 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS08065 912b91b0e85e78b6478b54b3f88aa8cc 313 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 269 295 - T 06-07-2017 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981 CDO28_RS08065 912b91b0e85e78b6478b54b3f88aa8cc 313 Pfam PF01148 Cytidylyltransferase family 46 311 2.7E-57 T 06-07-2017 CDO28_RS25675 dd53183a70b3839b98472d6aaa481791 237 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 196 5.3E-6 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25675 dd53183a70b3839b98472d6aaa481791 237 SUPERFAMILY SSF56784 8 232 4.77E-29 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25675 dd53183a70b3839b98472d6aaa481791 237 Gene3D G3DSA:3.40.50.1000 93 232 3.4E-22 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS25675 dd53183a70b3839b98472d6aaa481791 237 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 10 189 2.2E-40 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS27505 c549d7d83cac8fd759014e1fff7c502e 296 Gene3D G3DSA:3.40.50.2300 28 142 2.5E-36 T 06-07-2017 CDO28_RS27505 c549d7d83cac8fd759014e1fff7c502e 296 Gene3D G3DSA:3.40.50.2300 143 288 3.9E-46 T 06-07-2017 CDO28_RS27505 c549d7d83cac8fd759014e1fff7c502e 296 SUPERFAMILY SSF53822 28 284 7.7E-72 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27505 c549d7d83cac8fd759014e1fff7c502e 296 Pfam PF13407 Periplasmic binding protein domain 30 280 6.4E-53 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS23790 8e8d267ecb5053e454840a628e353d05 509 Pfam PF00916 Sulfate permease family 8 367 3.5E-59 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 9 519 3.0E-122 T 06-07-2017 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 SUPERFAMILY SSF161098 37 251 4.19E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 Gene3D G3DSA:1.10.3720.10 283 525 1.4E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 Gene3D G3DSA:1.10.3720.10 38 255 3.3E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 SUPERFAMILY SSF161098 281 521 1.59E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11070 6b932ef4de3ce48413aea354efbff55b 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 251 9.7E-7 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22545 69db6376b2d3847bbf094044eb4e0e74 233 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 9 193 2.7E-96 T 06-07-2017 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 CDO28_RS22545 69db6376b2d3847bbf094044eb4e0e74 233 PIRSF PIRSF000013 1 202 6.2E-108 T 06-07-2017 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 CDO28_RS22545 69db6376b2d3847bbf094044eb4e0e74 233 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 20 192 1.4E-73 T 06-07-2017 IPR005126 NapC/NirT cytochrome c, N-terminal CDO28_RS22545 69db6376b2d3847bbf094044eb4e0e74 233 Gene3D G3DSA:1.10.3820.10 20 192 6.2E-27 T 06-07-2017 CDO28_RS22545 69db6376b2d3847bbf094044eb4e0e74 233 SUPERFAMILY SSF48695 16 196 3.54E-64 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 PIRSF PIRSF001549 12 478 1.0E-127 T 06-07-2017 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Pfam PF13393 Histidyl-tRNA synthetase 21 366 4.1E-44 T 06-07-2017 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Pfam PF03129 Anticodon binding domain 385 469 1.6E-9 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 18 462 8.7E-117 T 06-07-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 SUPERFAMILY SSF55681 17 374 2.39E-71 T 06-07-2017 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 14 494 26.252 T 06-07-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Gene3D G3DSA:3.40.50.800 384 495 3.6E-26 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 SUPERFAMILY SSF52954 383 495 4.09E-17 T 06-07-2017 IPR004154 Anticodon-binding CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Gene3D G3DSA:3.30.930.10 17 212 4.1E-83 T 06-07-2017 CDO28_RS06660 b540e0c522feb821a38989fbbf2b5dce 507 Gene3D G3DSA:3.30.930.10 275 375 4.1E-83 T 06-07-2017 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 324 4.8E-32 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 SUPERFAMILY SSF52518 379 586 2.44E-47 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Gene3D G3DSA:3.40.50.970 349 565 1.7E-50 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 3.6E-44 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Gene3D G3DSA:3.40.50.1220 178 335 2.2E-49 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 441 460 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 2 582 0.0 T 06-07-2017 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 SUPERFAMILY SSF52518 1 179 2.67E-44 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 555 2.5E-29 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 SUPERFAMILY SSF52467 153 355 2.7E-41 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS27580 43fb48a659dc2cb4378f37eb7c30ead1 591 Gene3D G3DSA:3.40.50.970 1 177 1.4E-51 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 PIRSF PIRSF009264 1 426 2.1E-197 T 06-07-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 Pfam PF08013 Tagatose 6 phosphate kinase 8 424 1.7E-186 T 06-07-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 SUPERFAMILY SSF51569 8 425 3.66E-161 T 06-07-2017 CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 8 425 6.9E-202 T 06-07-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 Gene3D G3DSA:3.20.20.70 13 294 6.3E-127 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS27485 4f43771d3da6e285a02407f98b34abd5 426 Gene3D G3DSA:1.10.400.20 295 409 1.2E-46 T 06-07-2017 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 06-07-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 SUPERFAMILY SSF51569 1 214 2.41E-80 T 06-07-2017 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 Pfam PF00923 Transaldolase 3 202 1.9E-60 T 06-07-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 Hamap MF_00494 Probable transaldolase [tal]. 1 214 46.755 T 06-07-2017 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 211 4.2E-87 T 06-07-2017 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 Gene3D G3DSA:3.20.20.70 1 215 2.3E-77 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS11865 18eaf28c12dee491061870186fa7e6fb 217 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 06-07-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 PIRSF PIRSF001084 1 646 5.9E-226 T 06-07-2017 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Gene3D G3DSA:2.60.40.1180 599 646 9.2E-21 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 SUPERFAMILY SSF52317 395 592 2.98E-51 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 SUPERFAMILY SSF51445 1 366 2.51E-119 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 SUPERFAMILY SSF51011 593 646 7.19E-14 T 06-07-2017 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Gene3D G3DSA:3.20.20.80 1 389 5.4E-131 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Pfam PF08532 Beta-galactosidase trimerisation domain 396 592 2.0E-49 T 06-07-2017 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Pfam PF08533 Beta-galactosidase C-terminal domain 600 646 2.5E-10 T 06-07-2017 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Pfam PF02449 Beta-galactosidase 2 386 2.2E-154 T 06-07-2017 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CDO28_RS28205 c42d5da0b016f178dab6bac6219e946c 646 Gene3D G3DSA:3.40.50.880 395 593 3.8E-54 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS08175 ad933d50e07a4d2c95dc35ec2eb2525a 268 SUPERFAMILY SSF56300 3 259 5.77E-48 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS08175 ad933d50e07a4d2c95dc35ec2eb2525a 268 Pfam PF00149 Calcineurin-like phosphoesterase 3 201 1.0E-12 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS08175 ad933d50e07a4d2c95dc35ec2eb2525a 268 Gene3D G3DSA:3.60.21.10 3 254 1.9E-35 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS08175 ad933d50e07a4d2c95dc35ec2eb2525a 268 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 2 259 30.815 T 06-07-2017 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 SUPERFAMILY SSF52540 13 239 3.3E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 ProSitePatterns PS00211 ABC transporters family signature. 388 402 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 Pfam PF00005 ABC transporter 29 182 1.1E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 Pfam PF00005 ABC transporter 279 415 3.2E-7 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 Gene3D G3DSA:3.40.50.300 9 242 1.8E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 Gene3D G3DSA:3.40.50.300 278 470 4.2E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 SMART SM00382 38 230 1.3E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 SMART SM00382 285 462 0.22 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21275 67d251b5158d117c2dc0576e4bfa8e09 487 SUPERFAMILY SSF52540 278 468 1.92E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 3 417 1.7E-116 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 Pfam PF13437 HlyD family secretion protein 270 385 1.5E-14 T 06-07-2017 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 Gene3D G3DSA:2.40.50.100 39 71 4.7E-16 T 06-07-2017 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 Gene3D G3DSA:2.40.50.100 267 302 4.7E-16 T 06-07-2017 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 382 397 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 49 69 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 282 303 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 339 362 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 7 30 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 315 339 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 397 417 5.1E-52 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS33395 87188aaa8f9d5a1660ceb68ae38c7440 418 Pfam PF13533 Biotin-lipoyl like 46 77 1.6E-5 T 06-07-2017 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Pfam PF08245 Mur ligase middle domain 110 312 1.0E-49 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Pfam PF01225 Mur ligase family, catalytic domain 27 100 1.8E-11 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Gene3D G3DSA:3.40.1190.10 104 336 9.1E-69 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Gene3D G3DSA:3.90.190.20 337 476 1.8E-51 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 SUPERFAMILY SSF63418 13 101 3.27E-21 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 483 31.343 T 06-07-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 SUPERFAMILY SSF53623 103 332 2.22E-69 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 SUPERFAMILY SSF53244 335 484 1.83E-44 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Gene3D G3DSA:3.40.1390.10 13 102 3.6E-24 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 417 5.9E-22 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16370 32093fc64ff7103b67bd300280d9398b 486 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 25 483 1.1E-136 T 06-07-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CDO28_RS31830 fc671ed5cfc92a1c273efa81a3d23cf9 320 SUPERFAMILY SSF51445 208 295 6.02E-10 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS31830 fc671ed5cfc92a1c273efa81a3d23cf9 320 Gene3D G3DSA:3.20.20.80 6 188 2.1E-30 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31830 fc671ed5cfc92a1c273efa81a3d23cf9 320 Gene3D G3DSA:3.20.20.80 202 278 2.6E-6 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31830 fc671ed5cfc92a1c273efa81a3d23cf9 320 SUPERFAMILY SSF51445 6 188 9.6E-27 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 Gene3D G3DSA:3.60.20.10 13 183 2.0E-84 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 Pfam PF00227 Proteasome subunit 11 181 8.0E-23 T 06-07-2017 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 PIRSF PIRSF039093 7 185 7.7E-84 T 06-07-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 SUPERFAMILY SSF56235 10 182 4.48E-58 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 13 182 1.6E-83 T 06-07-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CDO28_RS10355 7c505f3a81a596bc9cfa593c66ecbb6f 185 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 12 182 41.112 T 06-07-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 276 318 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 Pfam PF12833 Helix-turn-helix domain 245 321 3.5E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 SUPERFAMILY SSF46689 222 273 1.79E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 SUPERFAMILY SSF46689 276 326 7.62E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 306 5.4E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 306 322 5.4E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 Gene3D G3DSA:1.10.10.60 218 276 3.3E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 SMART SM00342 239 322 2.9E-29 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS09525 3416c3e1b4892585ebceaf389b5874b6 340 Gene3D G3DSA:1.10.10.60 277 325 3.4E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 215 229 - T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 PIRSF PIRSF001434 21 408 3.8E-125 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 Gene3D G3DSA:3.40.640.10 31 271 2.5E-77 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 33 405 1.4E-126 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 Gene3D G3DSA:3.90.1150.10 272 406 6.8E-47 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 SUPERFAMILY SSF53383 41 406 5.41E-101 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS10220 36a89a58b229c272f8ddbcdbd17bf307 408 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 29 408 5.7E-197 T 06-07-2017 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48 CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 33 331 3.7E-106 T 06-07-2017 IPR011970 Lytic murein transglycosylase CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 Pfam PF01471 Putative peptidoglycan binding domain 353 403 7.3E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 Pfam PF13406 Transglycosylase SLT domain 33 327 5.7E-100 T 06-07-2017 IPR031304 Transglycosylase SLT domain 2 CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 Gene3D G3DSA:1.10.101.10 353 404 2.8E-14 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 SUPERFAMILY SSF47090 345 404 4.55E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 Gene3D G3DSA:1.10.530.10 220 332 9.0E-51 T 06-07-2017 CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 Gene3D G3DSA:1.10.530.10 77 134 9.0E-51 T 06-07-2017 CDO28_RS13075 5c0ba8c6bc3fdca0fa2993a32f142414 405 SUPERFAMILY SSF53955 17 332 4.87E-93 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS03365 b862f148867a07d9bdbbffa2c1540143 229 Pfam PF04654 Protein of unknown function, DUF599 7 219 1.5E-56 T 06-07-2017 IPR006747 Protein of unknown function DUF599 CDO28_RS26745 b8471f5d6a87a1dad4e2feec41cd3c2d 101 Pfam PF06169 Protein of unknown function (DUF982) 11 79 7.3E-24 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS04945 8d9415531a37be5903fca99a1f9f52c0 160 Gene3D G3DSA:3.90.1590.10 6 159 2.1E-40 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS04945 8d9415531a37be5903fca99a1f9f52c0 160 SUPERFAMILY SSF51316 5 131 1.15E-38 T 06-07-2017 IPR011057 Mss4-like CDO28_RS04945 8d9415531a37be5903fca99a1f9f52c0 160 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 107 7.8E-16 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.0E-37 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.0E-37 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.0E-37 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.0E-37 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.295 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 SUPERFAMILY SSF54686 1 134 6.28E-55 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 06-07-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 5.4E-48 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.7E-56 T 06-07-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 Gene3D G3DSA:3.90.1170.10 23 134 4.3E-51 T 06-07-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03595 e341bbb1987eafcd95f1a688bc6bbab2 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 06-07-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS16590 7a044d6d5e2bdcd160da902119176375 144 Pfam PF08592 Domain of unknown function (DUF1772) 15 139 7.7E-24 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 Pfam PF13377 Periplasmic binding protein-like domain 174 330 1.0E-25 T 06-07-2017 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 53 7.6E-12 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 Gene3D G3DSA:3.40.50.2300 59 175 2.9E-22 T 06-07-2017 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 SUPERFAMILY SSF47413 7 64 3.38E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 Gene3D G3DSA:3.40.50.2300 176 332 1.2E-38 T 06-07-2017 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 SMART SM00354 6 76 7.4E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 SUPERFAMILY SSF53822 67 332 1.97E-45 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32415 4d32960e664c50f4273939f9243dc1fe 334 Gene3D G3DSA:1.10.260.40 8 58 2.8E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS21235 c114b494eae5ff6d8404617b1881d3b0 209 Gene3D G3DSA:1.10.357.10 9 187 1.7E-18 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS21235 c114b494eae5ff6d8404617b1881d3b0 209 SUPERFAMILY SSF46689 6 73 2.87E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21235 c114b494eae5ff6d8404617b1881d3b0 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 6.3E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 Pfam PF00196 Bacterial regulatory proteins, luxR family 215 270 2.6E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 Gene3D G3DSA:3.30.450.80 45 218 3.0E-14 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 230 246 1.3E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 246 258 1.3E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 230 1.3E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 SUPERFAMILY SSF46894 199 276 1.43E-18 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 Gene3D G3DSA:1.10.10.10 219 276 4.1E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 Pfam PF03472 Autoinducer binding domain 57 202 2.2E-24 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 ProSitePatterns PS00622 LuxR-type HTH domain signature. 230 257 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 SMART SM00421 213 270 8.8E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06445 a64a962bb021857b4e828feda1a2bb8b 277 SUPERFAMILY SSF75516 45 205 7.19E-16 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 PIRSF PIRSF000090 1 249 1.2E-88 T 06-07-2017 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 SMART SM00893 23 211 2.9E-71 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 06-07-2017 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105 CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 SUPERFAMILY SSF52402 1 242 5.02E-88 T 06-07-2017 CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 Gene3D G3DSA:3.40.50.620 1 246 4.8E-107 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13915 a5f79be460f015de7827492c8b6f0430 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 4.9E-47 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 198 211 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 85 98 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 289 303 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 346 357 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 111 119 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 122 135 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 212 225 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 402 415 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 PRINTS PR00415 Aconitase family signature 136 151 5.4E-49 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 ProSitePatterns PS01244 Aconitase family signature 2. 402 415 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 ProSitePatterns PS00450 Aconitase family signature 1. 342 358 - T 06-07-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 469 61.482 T 06-07-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Gene3D G3DSA:3.30.499.10 4 161 1.8E-24 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 SUPERFAMILY SSF53732 4 468 1.83E-172 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Gene3D G3DSA:3.40.1060.10 170 283 6.8E-43 T 06-07-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 467 5.4E-248 T 06-07-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Pfam PF00330 Aconitase family (aconitate hydratase) 9 460 3.1E-159 T 06-07-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Gene3D G3DSA:3.30.499.10 338 468 4.6E-64 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS11315 2b3a6feac8f9eaadb6d132ee4f6ff28e 469 Gene3D G3DSA:3.30.499.10 296 306 4.6E-64 T 06-07-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 Pfam PF00455 DeoR C terminal sensor domain 81 238 3.2E-46 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 ProSitePatterns PS00894 DeoR-type HTH domain signature. 14 48 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 SMART SM00420 14 66 1.6E-15 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 Gene3D G3DSA:1.10.10.10 13 64 3.2E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 Gene3D G3DSA:3.40.50.1360 82 219 1.4E-14 T 06-07-2017 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 SUPERFAMILY SSF100950 81 239 3.59E-29 T 06-07-2017 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 SUPERFAMILY SSF46785 13 67 1.47E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 Pfam PF08220 DeoR-like helix-turn-helix domain 14 68 1.3E-15 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 32 46 2.8E-7 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 46 64 2.8E-7 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS27595 644429a855d653953949f06bd8f81fd7 261 SMART SM01134 79 240 7.4E-55 T 06-07-2017 CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 Hamap MF_00301 Homoserine kinase [thrB]. 1 326 175.266 T 06-07-2017 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 306 5.0E-121 T 06-07-2017 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 Gene3D G3DSA:3.30.200.20 2 104 1.9E-39 T 06-07-2017 CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 SUPERFAMILY SSF56112 5 313 2.75E-87 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 Pfam PF01636 Phosphotransferase enzyme family 28 255 3.3E-38 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS06000 83395e73aebcb4294dad12b3b8b75e44 326 Gene3D G3DSA:3.90.1200.10 106 316 1.3E-73 T 06-07-2017 CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 SUPERFAMILY SSF63411 2 215 2.29E-60 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 SUPERFAMILY SSF63411 225 411 7.81E-45 T 06-07-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 Gene3D G3DSA:3.30.830.10 13 225 5.8E-62 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 Pfam PF00675 Insulinase (Peptidase family M16) 15 161 3.8E-47 T 06-07-2017 IPR011765 Peptidase M16, N-terminal CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 Gene3D G3DSA:3.30.830.10 226 413 1.1E-58 T 06-07-2017 IPR011237 Peptidase M16 domain GO:0046872 CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 Pfam PF05193 Peptidase M16 inactive domain 168 340 2.9E-34 T 06-07-2017 IPR007863 Peptidase M16, C-terminal CDO28_RS05965 1623fc142c2314b592ebbb9e36712439 433 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 35 58 - T 06-07-2017 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 SUPERFAMILY SSF53850 96 297 9.77E-24 T 06-07-2017 CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 Gene3D G3DSA:3.40.190.10 179 264 3.8E-15 T 06-07-2017 CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.9E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 SUPERFAMILY SSF46785 2 84 9.25E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 Pfam PF03466 LysR substrate binding domain 95 292 1.8E-24 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 Gene3D G3DSA:3.40.190.10 96 178 4.0E-11 T 06-07-2017 CDO28_RS32005 1d3129188254be72d5d21f3b9b356bf4 325 Gene3D G3DSA:1.10.10.10 4 90 6.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 SUPERFAMILY SSF46548 146 263 6.28E-18 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 Pfam PF13484 4Fe-4S double cluster binding domain 199 263 1.4E-18 T 06-07-2017 CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 15 322 43.09 T 06-07-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 200 211 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 Pfam PF08331 Domain of unknown function (DUF1730) 71 147 8.4E-24 T 06-07-2017 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 Gene3D G3DSA:3.30.70.20 197 269 8.1E-8 T 06-07-2017 CDO28_RS08930 1f08925fd5b251c108b9b6d46e8ba843 387 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 22 354 5.7E-134 T 06-07-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 SUPERFAMILY SSF46626 23 121 3.43E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 Gene3D G3DSA:1.10.760.10 24 120 5.9E-30 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 PRINTS PR00604 Class IA and IB cytochrome C signature 36 43 1.4E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 PRINTS PR00604 Class IA and IB cytochrome C signature 78 94 1.4E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 PRINTS PR00604 Class IA and IB cytochrome C signature 64 74 1.4E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 PRINTS PR00604 Class IA and IB cytochrome C signature 48 63 1.4E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 PRINTS PR00604 Class IA and IB cytochrome C signature 113 121 1.4E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS24635 c243afbca9010bf17254cc7f29c57557 122 Pfam PF00034 Cytochrome c 26 120 3.2E-9 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 SMART SM00862 159 235 5.6E-18 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 Gene3D G3DSA:3.40.50.2300 6 127 3.5E-40 T 06-07-2017 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 SMART SM00448 5 117 2.4E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 235 1.4E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 SUPERFAMILY SSF52172 6 133 1.34E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 Gene3D G3DSA:1.10.10.10 136 238 1.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 SUPERFAMILY SSF46894 136 236 1.98E-23 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS31670 41e799f47df47ffc5ce03c374dd4488e 245 Pfam PF00072 Response regulator receiver domain 7 118 4.9E-30 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS12080 9fa4069e8a85d4767600b510ef86585c 637 Pfam PF07244 Surface antigen variable number repeat 238 310 4.2E-5 T 06-07-2017 IPR010827 Surface antigen variable number GO:0019867 CDO28_RS12080 9fa4069e8a85d4767600b510ef86585c 637 Pfam PF01103 Surface antigen 337 637 5.7E-60 T 06-07-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 CDO28_RS12080 9fa4069e8a85d4767600b510ef86585c 637 Gene3D G3DSA:2.40.160.50 322 637 2.9E-38 T 06-07-2017 CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 Gene3D G3DSA:3.40.50.720 2 148 2.4E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 Gene3D G3DSA:1.10.3730.10 172 252 1.2E-4 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 94 2.9E-15 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 159 252 3.3E-7 T 06-07-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 SUPERFAMILY SSF51735 1 146 2.84E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 PIRSF PIRSF000193 1 257 3.8E-47 T 06-07-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CDO28_RS30590 07de0561727b84e047de4a26c1ed32b0 258 SUPERFAMILY SSF48179 162 253 1.7E-5 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 223 5.4E-4 T 06-07-2017 CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 Gene3D G3DSA:3.40.50.720 4 247 7.6E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 4.7E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 SUPERFAMILY SSF51735 4 247 3.27E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32810 612312a96863fceb8938eee7808318f3 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 247 3.6E-61 T 06-07-2017 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 7.4E-25 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 PRINTS PR00050 Cold shock protein signature 4 19 1.1E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 PRINTS PR00050 Cold shock protein signature 25 34 1.1E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 PRINTS PR00050 Cold shock protein signature 40 58 1.1E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 SUPERFAMILY SSF50249 1 67 1.8E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 PIRSF PIRSF002599 1 69 9.9E-22 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 SMART SM00357 3 69 1.5E-27 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS17015 aa3c131200413c2eb4d4ebf16460bb73 69 Gene3D G3DSA:2.40.50.140 1 66 8.2E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 285 1.1E-36 T 06-07-2017 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.1E-36 T 06-07-2017 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.1E-36 T 06-07-2017 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.1E-36 T 06-07-2017 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.1E-36 T 06-07-2017 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 273 291 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 6.6E-76 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 06-07-2017 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 Gene3D G3DSA:3.50.50.60 4 110 6.8E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 Gene3D G3DSA:3.50.50.60 111 305 6.8E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 310 1.2E-122 T 06-07-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 SUPERFAMILY SSF51905 1 309 3.37E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25965 70294c4de965c63b580d16d1bda47d53 332 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 299 4.8E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 SUPERFAMILY SSF63829 5 289 3.11E-57 T 06-07-2017 CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 95 116 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 200 217 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 18 35 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 242 260 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 137 159 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 160 180 9.1E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 18 260 2.4E-64 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS10050 d79f18b3466070c4cb1db129da3ded92 294 Gene3D G3DSA:2.120.10.30 8 290 2.2E-74 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS34055 31154ebfd8922c78667b39f07f1b98cd 143 Gene3D G3DSA:3.10.180.10 3 135 6.4E-44 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS34055 31154ebfd8922c78667b39f07f1b98cd 143 SUPERFAMILY SSF54593 5 132 5.36E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS02970 7348fb89b9b9b1f1667b6218e1cfd046 81 Pfam PF10276 Zinc-finger domain 24 58 6.4E-10 T 06-07-2017 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS02970 7348fb89b9b9b1f1667b6218e1cfd046 81 Gene3D G3DSA:2.60.260.40 1 80 8.3E-29 T 06-07-2017 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 Pfam PF03797 Autotransporter beta-domain 1132 1390 3.8E-47 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 811 1411 3.2E-74 T 06-07-2017 IPR006315 Outer membrane autotransporter barrel GO:0019867 CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 SUPERFAMILY SSF51126 466 929 1.54E-23 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 SMART SM00869 1133 1396 4.4E-34 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 SUPERFAMILY SSF103515 1129 1411 4.05E-42 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 Gene3D G3DSA:2.40.128.130 1074 1411 5.1E-65 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 Gene3D G3DSA:2.160.20.20 743 935 1.1E-20 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS05200 012c997701fdac4e3f09b5e048f5aec4 1411 Gene3D G3DSA:2.160.20.20 385 632 1.1E-20 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS27070 a78ebc29dd790854098f27151a353e41 310 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 268 2.0E-22 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS27070 a78ebc29dd790854098f27151a353e41 310 Gene3D G3DSA:3.10.180.10 2 127 3.3E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS27070 a78ebc29dd790854098f27151a353e41 310 Gene3D G3DSA:3.10.180.10 136 309 4.6E-37 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS27070 a78ebc29dd790854098f27151a353e41 310 SUPERFAMILY SSF54593 4 283 6.71E-49 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS00505 3e4edfae69cfc34af0f2c5b9ce5ffa1a 362 Pfam PF13458 Periplasmic binding protein 25 350 9.7E-32 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS00505 3e4edfae69cfc34af0f2c5b9ce5ffa1a 362 Gene3D G3DSA:3.40.50.2300 141 287 2.2E-13 T 06-07-2017 CDO28_RS00505 3e4edfae69cfc34af0f2c5b9ce5ffa1a 362 Gene3D G3DSA:3.40.50.2300 25 140 5.7E-15 T 06-07-2017 CDO28_RS00505 3e4edfae69cfc34af0f2c5b9ce5ffa1a 362 Gene3D G3DSA:3.40.50.2300 288 336 5.7E-15 T 06-07-2017 CDO28_RS00505 3e4edfae69cfc34af0f2c5b9ce5ffa1a 362 SUPERFAMILY SSF53822 25 353 5.35E-50 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 SUPERFAMILY SSF55781 90 270 2.16E-33 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 Pfam PF09339 IclR helix-turn-helix domain 28 77 1.3E-12 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 SUPERFAMILY SSF46785 27 99 1.05E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 Pfam PF01614 Bacterial transcriptional regulator 144 264 1.4E-5 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 Gene3D G3DSA:3.30.450.40 99 271 1.6E-36 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 SMART SM00346 25 115 5.3E-6 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS26350 457a9ee4ebe287d9d0888b98c6b02de4 283 Gene3D G3DSA:1.10.10.10 26 98 4.2E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26315 b3cf8aedc02c0e6a9eec328f0149b835 341 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 28 336 1.5E-136 T 06-07-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 CDO28_RS26315 b3cf8aedc02c0e6a9eec328f0149b835 341 Pfam PF13531 Bacterial extracellular solute-binding protein 42 290 1.0E-46 T 06-07-2017 CDO28_RS26315 b3cf8aedc02c0e6a9eec328f0149b835 341 SUPERFAMILY SSF53850 29 337 3.88E-82 T 06-07-2017 CDO28_RS26315 b3cf8aedc02c0e6a9eec328f0149b835 341 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 155 163 - T 06-07-2017 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 CDO28_RS26315 b3cf8aedc02c0e6a9eec328f0149b835 341 Gene3D G3DSA:3.40.190.10 124 288 3.3E-75 T 06-07-2017 CDO28_RS22480 5b7d1cb66076fd93045b4dba1c0f9189 105 SUPERFAMILY SSF53098 6 99 5.44E-23 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS22480 5b7d1cb66076fd93045b4dba1c0f9189 105 Gene3D G3DSA:3.30.420.10 6 96 8.6E-23 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS22480 5b7d1cb66076fd93045b4dba1c0f9189 105 Pfam PF13683 Integrase core domain 30 95 5.3E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS02660 09c7ba7155cbe979946c77b912b44281 280 Gene3D G3DSA:1.10.600.10 10 277 8.3E-17 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS02660 09c7ba7155cbe979946c77b912b44281 280 SUPERFAMILY SSF48576 7 278 5.9E-56 T 06-07-2017 IPR008949 Isoprenoid synthase domain CDO28_RS02660 09c7ba7155cbe979946c77b912b44281 280 Pfam PF00494 Squalene/phytoene synthase 12 273 4.4E-52 T 06-07-2017 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 CDO28_RS30865 b0fec53b0036382717c17e3997c7426a 361 Gene3D G3DSA:3.40.50.1980 51 196 3.4E-15 T 06-07-2017 CDO28_RS30865 b0fec53b0036382717c17e3997c7426a 361 SUPERFAMILY SSF53807 51 336 2.67E-39 T 06-07-2017 CDO28_RS30865 b0fec53b0036382717c17e3997c7426a 361 Gene3D G3DSA:3.40.50.1980 201 336 6.0E-21 T 06-07-2017 CDO28_RS30865 b0fec53b0036382717c17e3997c7426a 361 Pfam PF01497 Periplasmic binding protein 55 317 4.6E-61 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:1.20.1220.12 587 722 8.0E-76 T 06-07-2017 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 3 720 0.0 T 06-07-2017 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Pfam PF01274 Malate synthase 18 695 2.5E-180 T 06-07-2017 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:3.20.20.360 334 586 3.8E-153 T 06-07-2017 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:3.20.20.360 264 294 3.8E-153 T 06-07-2017 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:3.20.20.360 87 133 3.8E-153 T 06-07-2017 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 SUPERFAMILY SSF51645 1 721 0.0 T 06-07-2017 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:2.170.170.11 296 333 6.1E-65 T 06-07-2017 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:2.170.170.11 134 262 6.1E-65 T 06-07-2017 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Gene3D G3DSA:1.10.1860.10 2 86 3.5E-31 T 06-07-2017 CDO28_RS10325 5bcae1bf28299e1c139f776e7f32535d 723 Hamap MF_00641 Malate synthase G [glcB]. 1 723 413.716 T 06-07-2017 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS11155 dec0dceadea19f56dea1bb086e9258ce 210 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 17 207 1.3E-53 T 06-07-2017 IPR006008 Intracellular septation protein A GO:0016021 CDO28_RS11155 dec0dceadea19f56dea1bb086e9258ce 210 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 17 206 18.319 T 06-07-2017 IPR006008 Intracellular septation protein A GO:0016021 CDO28_RS11155 dec0dceadea19f56dea1bb086e9258ce 210 Pfam PF04279 Intracellular septation protein A 17 205 1.9E-59 T 06-07-2017 IPR006008 Intracellular septation protein A GO:0016021 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Gene3D G3DSA:1.10.760.10 69 163 7.3E-17 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Gene3D G3DSA:3.90.10.10 175 199 6.4E-4 T 06-07-2017 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Pfam PF00034 Cytochrome c 293 360 2.1E-6 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 SUPERFAMILY SSF46626 271 359 4.58E-17 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 SUPERFAMILY SSF46626 64 163 1.44E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 77 157 1.9E-11 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Gene3D G3DSA:1.10.760.10 288 361 6.3E-20 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 Gene3D G3DSA:1.10.760.10 200 287 2.2E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27455 8dba832efd2ad5a2476bd00c869faa3c 374 SUPERFAMILY SSF46626 190 258 8.46E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS12400 713a9463f2ad0fe9aa2a589a61e69017 148 SUPERFAMILY SSF46785 6 146 3.67E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12400 713a9463f2ad0fe9aa2a589a61e69017 148 Pfam PF12802 MarR family 36 94 4.3E-8 T 06-07-2017 CDO28_RS12400 713a9463f2ad0fe9aa2a589a61e69017 148 SMART SM00347 30 130 7.4E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12400 713a9463f2ad0fe9aa2a589a61e69017 148 Gene3D G3DSA:1.10.10.10 2 146 6.4E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21460 51dac80ac00c8fc8ac04efb7bc69300c 334 Pfam PF02615 Malate/L-lactate dehydrogenase 6 328 8.7E-103 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS21460 51dac80ac00c8fc8ac04efb7bc69300c 334 Gene3D G3DSA:1.10.1530.10 1 76 2.8E-16 T 06-07-2017 CDO28_RS21460 51dac80ac00c8fc8ac04efb7bc69300c 334 Gene3D G3DSA:3.30.1370.60 77 271 4.5E-72 T 06-07-2017 CDO28_RS21460 51dac80ac00c8fc8ac04efb7bc69300c 334 SUPERFAMILY SSF89733 1 331 3.01E-95 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS12130 84728b164c028efbb85aff54c0ba5be5 240 SUPERFAMILY SSF55729 148 234 1.04E-8 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS12130 84728b164c028efbb85aff54c0ba5be5 240 Gene3D G3DSA:3.40.630.30 159 234 9.3E-8 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS12130 84728b164c028efbb85aff54c0ba5be5 240 Pfam PF13302 Acetyltransferase (GNAT) domain 158 230 2.4E-7 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 Pfam PF12833 Helix-turn-helix domain 209 284 3.9E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 Gene3D G3DSA:1.10.10.60 237 285 4.3E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 SUPERFAMILY SSF46689 235 284 3.0E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 236 278 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 Gene3D G3DSA:1.10.10.60 181 236 1.0E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 266 9.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 282 9.7E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS19760 d2fd07379f2756fbba9e6da3ff074346 293 SMART SM00342 199 282 1.6E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 3 508 4.9E-231 T 06-07-2017 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 06-07-2017 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 Gene3D G3DSA:1.10.275.10 2 196 1.4E-69 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 Gene3D G3DSA:1.20.200.10 197 502 1.3E-119 T 06-07-2017 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 Pfam PF00221 Aromatic amino acid lyase 13 469 1.5E-179 T 06-07-2017 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 45.613 T 06-07-2017 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CDO28_RS26900 343e722f0c93357663260ee3960051d9 511 SUPERFAMILY SSF48557 2 502 1.02E-182 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 TIGRFAM TIGR02992 ectoine_eutC: ectoine utilization protein EutC 4 328 5.5E-185 T 06-07-2017 IPR014334 Ectoine utilization protein EutC CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 Gene3D G3DSA:3.30.1780.10 3 142 1.0E-40 T 06-07-2017 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 PIRSF PIRSF001439 1 329 7.2E-72 T 06-07-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 Gene3D G3DSA:3.40.50.720 143 302 1.3E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 4 320 1.9E-108 T 06-07-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CDO28_RS32715 e0936cdd4c99c0d8a3e78f9ee9542e80 329 SUPERFAMILY SSF51735 2 328 7.3E-92 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17600 7f2d0046333d5dda54d3c5ad24bbd6d1 298 Gene3D G3DSA:1.10.3720.10 87 292 1.6E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17600 7f2d0046333d5dda54d3c5ad24bbd6d1 298 SUPERFAMILY SSF161098 89 276 5.1E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17600 7f2d0046333d5dda54d3c5ad24bbd6d1 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 292 1.6E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17600 7f2d0046333d5dda54d3c5ad24bbd6d1 298 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 19 58 1.3E-9 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS09795 bb24a83dc4e898615de63939c6c10a80 339 Hamap MF_00524 Glucokinase [glk]. 10 325 40.017 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CDO28_RS09795 bb24a83dc4e898615de63939c6c10a80 339 TIGRFAM TIGR00749 glk: glucokinase 14 317 9.1E-70 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CDO28_RS09795 bb24a83dc4e898615de63939c6c10a80 339 Pfam PF02685 Glucokinase 14 323 2.2E-107 T 06-07-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CDO28_RS09795 bb24a83dc4e898615de63939c6c10a80 339 SUPERFAMILY SSF53067 16 323 8.91E-54 T 06-07-2017 CDO28_RS09795 bb24a83dc4e898615de63939c6c10a80 339 Gene3D G3DSA:3.40.367.20 109 307 1.9E-67 T 06-07-2017 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 SUPERFAMILY SSF52540 352 601 4.02E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 Pfam PF00664 ABC transporter transmembrane region 40 308 2.1E-14 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 Gene3D G3DSA:3.40.50.300 360 595 8.6E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 Gene3D G3DSA:1.20.1560.10 28 331 9.5E-38 T 06-07-2017 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 SUPERFAMILY SSF90123 22 335 8.37E-50 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 Pfam PF00005 ABC transporter 378 531 4.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS00155 7d8b7cffd7166872d11a8aa9f4c0d99b 617 SMART SM00382 386 586 5.6E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26710 5d4159ea26970432e809ab5b41185c69 167 Gene3D G3DSA:1.10.10.10 40 149 6.0E-41 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26710 5d4159ea26970432e809ab5b41185c69 167 SUPERFAMILY SSF46785 47 149 1.19E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26710 5d4159ea26970432e809ab5b41185c69 167 Pfam PF01638 HxlR-like helix-turn-helix 56 143 3.5E-32 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 238 256 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 SUPERFAMILY SSF51120 196 361 2.22E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 233 249 0.025 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 106 117 0.43 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 127 135 31.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 251 266 0.17 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 215 231 0.83 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 140 153 24.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 PRINTS PR00313 NodO calcium binding signature 242 250 3.5E-10 T 06-07-2017 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 PRINTS PR00313 NodO calcium binding signature 233 241 3.5E-10 T 06-07-2017 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 PRINTS PR00313 NodO calcium binding signature 107 118 3.5E-10 T 06-07-2017 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 PRINTS PR00313 NodO calcium binding signature 260 269 3.5E-10 T 06-07-2017 CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Gene3D G3DSA:2.150.10.10 198 313 1.6E-20 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 Gene3D G3DSA:2.150.10.10 24 164 5.3E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 SUPERFAMILY SSF51120 42 176 7.06E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 229 247 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 247 265 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS00735 ca79c33e1e90c2f7d2bb7c10c9f82494 363 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 220 238 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 389 406 0.026 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 262 273 3.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 374 388 1.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 417 433 0.032 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 228 245 0.031 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 210 226 0.085 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 52 67 0.32 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 288 297 7.6 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 355 363 11.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 174 191 0.061 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 158 173 1.6 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 192 209 0.93 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 26 39 0.12 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 SUPERFAMILY SSF51120 354 511 3.4E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 413 431 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 SUPERFAMILY SSF51120 146 257 4.19E-19 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 162 180 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Gene3D G3DSA:2.150.10.10 128 254 1.1E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Gene3D G3DSA:2.150.10.10 4 124 2.3E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Gene3D G3DSA:2.150.10.10 356 513 9.0E-30 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 Gene3D G3DSA:2.150.10.10 262 320 9.0E-30 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 386 404 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 207 225 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 377 395 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 198 216 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 171 189 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 SUPERFAMILY SSF51120 3 106 1.57E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 PRINTS PR00313 NodO calcium binding signature 30 41 3.9E-9 T 06-07-2017 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 PRINTS PR00313 NodO calcium binding signature 60 68 3.9E-9 T 06-07-2017 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 PRINTS PR00313 NodO calcium binding signature 78 87 3.9E-9 T 06-07-2017 CDO28_RS21640 4b915f999408b4c32ba6492c599a1106 516 PRINTS PR00313 NodO calcium binding signature 42 50 3.9E-9 T 06-07-2017 CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 15 208 3.7E-87 T 06-07-2017 IPR005273 Uracil-DNA glycosylase, family 4 domain CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 SMART SM00987 46 206 1.3E-39 T 06-07-2017 CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 32 190 4.2E-40 T 06-07-2017 IPR005273 Uracil-DNA glycosylase, family 4 domain CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 SMART SM00986 46 206 1.3E-39 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 Pfam PF03167 Uracil DNA glycosylase superfamily 46 205 4.5E-39 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 Gene3D G3DSA:3.40.470.10 21 212 4.1E-63 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS29100 d946b893d88e198a00abdf5c4d812403 213 SUPERFAMILY SSF52141 20 200 5.89E-56 T 06-07-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDO28_RS31605 cd6ffd05a068302ff6872b14e31bde25 256 SUPERFAMILY SSF48613 3 246 5.19E-69 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDO28_RS31605 cd6ffd05a068302ff6872b14e31bde25 256 Pfam PF03070 TENA/THI-4/PQQC family 11 222 5.3E-62 T 06-07-2017 IPR004305 Thiaminase-2/PQQC CDO28_RS31605 cd6ffd05a068302ff6872b14e31bde25 256 Gene3D G3DSA:1.20.910.10 4 242 3.2E-104 T 06-07-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDO28_RS31605 cd6ffd05a068302ff6872b14e31bde25 256 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 256 131.27 T 06-07-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 CDO28_RS31605 cd6ffd05a068302ff6872b14e31bde25 256 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 6 243 1.0E-129 T 06-07-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 Gene3D G3DSA:3.40.50.720 1 136 9.5E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 SUPERFAMILY SSF51735 3 149 7.77E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 SUPERFAMILY SSF55347 127 268 9.32E-22 T 06-07-2017 CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 2.1E-19 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 200 7.3E-11 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS22225 496901ec70dddc904a0eee4fb19c8b9f 317 Gene3D G3DSA:3.30.360.10 137 302 1.6E-35 T 06-07-2017 CDO28_RS07720 e33f04d9b8010c50056e11c7bba0fbbc 151 Gene3D G3DSA:1.10.10.10 1 136 2.3E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07720 e33f04d9b8010c50056e11c7bba0fbbc 151 SUPERFAMILY SSF46785 1 136 3.7E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07720 e33f04d9b8010c50056e11c7bba0fbbc 151 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 134 3.6E-33 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS07720 e33f04d9b8010c50056e11c7bba0fbbc 151 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 06-07-2017 IPR030489 Transcription regulator Rrf2-type, conserved site CDO28_RS07720 e33f04d9b8010c50056e11c7bba0fbbc 151 Pfam PF02082 Transcriptional regulator 1 81 2.7E-24 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 Gene3D G3DSA:1.10.1660.10 1 55 2.6E-26 T 06-07-2017 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 Gene3D G3DSA:1.10.1660.10 56 131 1.3E-32 T 06-07-2017 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 SMART SM00422 1 70 7.0E-34 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 7.8E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 7.8E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 7.8E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 5.4E-57 T 06-07-2017 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 Pfam PF00376 MerR family regulatory protein 2 39 3.7E-16 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 Pfam PF09278 MerR, DNA binding 44 108 3.2E-21 T 06-07-2017 IPR015358 Transcription regulator MerR, DNA binding CDO28_RS27840 804490ef56d05fb5c46a75345034a96a 147 SUPERFAMILY SSF46955 1 126 2.31E-40 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS11920 2550f1bd23dbf6b884de6aaeeca2a281 284 Gene3D G3DSA:1.10.3470.10 58 266 2.2E-4 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS11920 2550f1bd23dbf6b884de6aaeeca2a281 284 Pfam PF00950 ABC 3 transport family 14 268 9.7E-78 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CDO28_RS11920 2550f1bd23dbf6b884de6aaeeca2a281 284 SUPERFAMILY SSF81345 6 264 5.75E-38 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 109 314 3.7E-40 T 06-07-2017 IPR000477 Reverse transcriptase domain CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 SUPERFAMILY SSF56672 57 391 2.35E-53 T 06-07-2017 CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 104 117 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 172 190 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 230 243 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 Pfam PF08388 Group II intron, maturase-specific domain 332 403 3.0E-17 T 06-07-2017 IPR013597 Group II intron, maturase-specific CDO28_RS26910 609448b32f084296a70bd6a2dcd945e5 453 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 53 397 1.3E-121 T 06-07-2017 IPR030931 Group II intron reverse transcriptase/maturase CDO28_RS33450 7764abfbafe2773f989a3aa858c36c3e 227 SUPERFAMILY SSF88713 32 176 6.39E-29 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS33450 7764abfbafe2773f989a3aa858c36c3e 227 Gene3D G3DSA:3.20.20.370 47 176 8.1E-26 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS33450 7764abfbafe2773f989a3aa858c36c3e 227 Pfam PF01522 Polysaccharide deacetylase 49 171 1.1E-22 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS20615 68464d7cbc9b718081c802ed944f70c4 222 Pfam PF12973 ChrR Cupin-like domain 19 109 8.9E-41 T 06-07-2017 IPR025979 ChrR-like cupin domain CDO28_RS20615 68464d7cbc9b718081c802ed944f70c4 222 Gene3D G3DSA:2.60.120.10 168 209 4.5E-4 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS20615 68464d7cbc9b718081c802ed944f70c4 222 Gene3D G3DSA:2.60.120.10 17 120 8.2E-44 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS20615 68464d7cbc9b718081c802ed944f70c4 222 SUPERFAMILY SSF51182 3 117 2.67E-36 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS20615 68464d7cbc9b718081c802ed944f70c4 222 SUPERFAMILY SSF51182 119 212 4.26E-12 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS32235 a361e714f845b680a0cac06645bad57f 54 Pfam PF11453 Protein of unknown function (DUF2950) 1 52 2.5E-19 T 06-07-2017 IPR021556 Protein of unknown function DUF2950 CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 Pfam PF00005 ABC transporter 26 173 1.7E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 Gene3D G3DSA:3.40.50.300 8 223 2.9E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 SUPERFAMILY SSF52540 9 223 4.98E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 SMART SM00382 35 222 2.0E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13850 fc37168f3ab6720f29985207b8da5a66 227 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 9 222 3.1E-84 T 06-07-2017 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 SUPERFAMILY SSF46785 5 118 1.06E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 1.2E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 Gene3D G3DSA:1.10.10.10 10 90 2.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 6.5E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 6.5E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 6.5E-11 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 Gene3D G3DSA:3.40.190.10 99 183 2.7E-29 T 06-07-2017 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 SUPERFAMILY SSF53850 99 296 1.66E-38 T 06-07-2017 CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 Pfam PF03466 LysR substrate binding domain 97 296 8.5E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS10920 8f3f69dd57de1d148d3b54105c9c1e70 297 Gene3D G3DSA:3.40.190.10 184 262 7.6E-20 T 06-07-2017 CDO28_RS14225 0a21b9b108ebe70278177f1515d190d7 437 Gene3D G3DSA:3.40.640.10 57 304 1.4E-69 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS14225 0a21b9b108ebe70278177f1515d190d7 437 Pfam PF00202 Aminotransferase class-III 23 418 1.4E-91 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS14225 0a21b9b108ebe70278177f1515d190d7 437 SUPERFAMILY SSF53383 13 420 1.11E-111 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS14225 0a21b9b108ebe70278177f1515d190d7 437 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 271 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS14225 0a21b9b108ebe70278177f1515d190d7 437 Gene3D G3DSA:3.90.1150.10 305 421 6.4E-34 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Gene3D G3DSA:3.40.50.20 1 128 2.6E-48 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Pfam PF00364 Biotin-requiring enzyme 513 568 2.0E-13 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Pfam PF02785 Biotin carboxylase C-terminal domain 334 443 9.6E-37 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 526 543 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 3.7E-43 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 SUPERFAMILY SSF51246 328 445 2.41E-38 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 SUPERFAMILY SSF51230 496 568 8.64E-16 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Gene3D G3DSA:3.30.1490.20 129 201 8.3E-22 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 SMART SM00878 334 443 1.3E-58 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 321 2.7E-75 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Gene3D G3DSA:3.30.470.20 202 446 3.7E-91 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 SUPERFAMILY SSF56059 82 330 5.66E-58 T 06-07-2017 CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 SUPERFAMILY SSF52440 1 112 4.46E-46 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS18405 34b014e9e68c82952ee50d400c70025e 569 Gene3D G3DSA:2.40.50.100 498 568 4.5E-17 T 06-07-2017 CDO28_RS10665 88ec9a2da511e9a13aad475170d191f1 264 SUPERFAMILY SSF52540 7 259 5.72E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10665 88ec9a2da511e9a13aad475170d191f1 264 Pfam PF13614 AAA domain 7 183 3.7E-58 T 06-07-2017 IPR025669 AAA domain CDO28_RS10665 88ec9a2da511e9a13aad475170d191f1 264 Gene3D G3DSA:3.40.50.300 7 261 1.9E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14705 2e8b3c5cee61923e1f52d288aff5ac57 284 Gene3D G3DSA:1.10.3720.10 3 273 3.3E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14705 2e8b3c5cee61923e1f52d288aff5ac57 284 SUPERFAMILY SSF161098 12 282 5.51E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14705 2e8b3c5cee61923e1f52d288aff5ac57 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 275 1.4E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15760 af44b4b9f2909e17db0ac0d4682b4ef8 211 SUPERFAMILY SSF56784 5 193 1.16E-27 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15760 af44b4b9f2909e17db0ac0d4682b4ef8 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 94 187 7.3E-7 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15760 af44b4b9f2909e17db0ac0d4682b4ef8 211 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 74 189 1.9E-18 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS15760 af44b4b9f2909e17db0ac0d4682b4ef8 211 Gene3D G3DSA:3.40.50.1000 4 200 9.8E-26 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS33080 c155d990b52235977fbc03e894934a21 108 Gene3D G3DSA:3.40.50.2300 7 98 1.5E-6 T 06-07-2017 CDO28_RS33080 c155d990b52235977fbc03e894934a21 108 SUPERFAMILY SSF52172 3 94 3.91E-6 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS13700 7a28a37ad9785aa2fe32575dfa456751 132 Pfam PF01850 PIN domain 4 123 5.2E-15 T 06-07-2017 IPR002716 PIN domain CDO28_RS13700 7a28a37ad9785aa2fe32575dfa456751 132 Gene3D G3DSA:3.40.50.1010 3 131 3.7E-34 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS13700 7a28a37ad9785aa2fe32575dfa456751 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 130 10.946 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS13700 7a28a37ad9785aa2fe32575dfa456751 132 SUPERFAMILY SSF88723 1 131 2.13E-35 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 SMART SM00448 4 114 1.9E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 SMART SM00862 149 225 5.2E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 Gene3D G3DSA:1.10.10.10 128 227 2.8E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 SUPERFAMILY SSF52172 4 172 6.4E-42 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 Pfam PF00072 Response regulator receiver domain 6 115 4.3E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 Gene3D G3DSA:3.40.50.2300 4 123 2.7E-39 T 06-07-2017 CDO28_RS20435 8da13467cbec9686630bd66157bacf55 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 3.5E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 Pfam PF01037 Lrp/AsnC ligand binding domain 88 155 3.7E-11 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 SUPERFAMILY SSF54909 82 159 4.02E-12 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 SUPERFAMILY SSF46785 21 76 5.47E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 Gene3D G3DSA:3.30.70.920 84 156 1.6E-11 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 37 1.2E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 48 67 1.2E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 48 1.2E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 SMART SM00344 21 126 2.6E-20 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 Gene3D G3DSA:1.10.10.10 22 72 2.4E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13660 23f8ff57cc3a605688220339bc41c3b7 161 Pfam PF13412 Winged helix-turn-helix DNA-binding 22 68 7.8E-15 T 06-07-2017 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 PRINTS PR01270 Histone deacetylase superfamily signature 121 144 5.3E-18 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 5.3E-18 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 PRINTS PR01270 Histone deacetylase superfamily signature 155 170 5.3E-18 T 06-07-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 Gene3D G3DSA:3.40.800.20 5 307 4.8E-103 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 Pfam PF00850 Histone deacetylase domain 20 303 1.9E-84 T 06-07-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDO28_RS06160 12dc06be800748ada63e4cb36b303a3c 309 SUPERFAMILY SSF52768 1 307 1.29E-99 T 06-07-2017 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 372 1.3E-102 T 06-07-2017 IPR028053 Membrane insertase YidC, N-terminal CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 Pfam PF02096 60Kd inner membrane protein 374 571 1.8E-61 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR00701 60kDa inner membrane protein signature 435 458 2.4E-18 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR00701 60kDa inner membrane protein signature 89 110 2.4E-18 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR00701 60kDa inner membrane protein signature 264 279 2.4E-18 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR00701 60kDa inner membrane protein signature 344 364 2.4E-18 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR01900 YidC translocation/secretion protein signature 359 375 1.8E-22 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR01900 YidC translocation/secretion protein signature 507 522 1.8E-22 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 PRINTS PR01900 YidC translocation/secretion protein signature 526 550 1.8E-22 T 06-07-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 373 571 1.0E-69 T 06-07-2017 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 Pfam PF14849 YidC periplasmic domain 83 363 1.8E-83 T 06-07-2017 IPR028053 Membrane insertase YidC, N-terminal CDO28_RS08320 24ff13f45c9185b3480630880d50389f 595 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 6 573 23.316 T 06-07-2017 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 Gene3D G3DSA:3.40.50.300 10 214 1.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 249 341 4.6E-20 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 Gene3D G3DSA:3.30.1220.10 228 342 6.7E-40 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 SUPERFAMILY SSF52540 10 232 1.08E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 SUPERFAMILY SSF90002 248 341 1.02E-25 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 SMART SM00833 248 341 1.1E-14 T 06-07-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CDO28_RS31270 904066522c0d4a9c203a7137e48ccafb 349 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 196 4.0E-56 T 06-07-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 PIRSF PIRSF000337 1 443 1.2E-159 T 06-07-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 SUPERFAMILY SSF51679 1 434 5.23E-133 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 Gene3D G3DSA:3.20.20.30 346 435 4.6E-140 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 Gene3D G3DSA:3.20.20.30 2 306 4.6E-140 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 Pfam PF00296 Luciferase-like monooxygenase 18 379 2.4E-59 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS30145 0853af6ecfe772642fe8bf562695c0c3 449 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 428 2.4E-177 T 06-07-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 CDO28_RS31350 391e9acb4662b73e0719c876b6a9dfb6 343 SUPERFAMILY SSF142764 2 338 5.75E-59 T 06-07-2017 CDO28_RS31350 391e9acb4662b73e0719c876b6a9dfb6 343 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 198 331 1.3E-12 T 06-07-2017 IPR031475 Putative nucleotide-binding C-terminal domain CDO28_RS31350 391e9acb4662b73e0719c876b6a9dfb6 343 Pfam PF07005 Putative sugar-binding N-terminal domain 2 120 1.1E-23 T 06-07-2017 IPR010737 Putative sugar-binding, N-terminal domain CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 PIRSF PIRSF002162 1 177 2.1E-47 T 06-07-2017 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 Gene3D G3DSA:3.90.930.12 2 82 6.9E-28 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 Gene3D G3DSA:3.90.930.12 83 177 8.1E-41 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 37.712 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.2E-73 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 4.5E-30 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 4.5E-30 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 4.5E-30 T 06-07-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 06-07-2017 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 Pfam PF00347 Ribosomal protein L6 91 164 1.2E-21 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 Pfam PF00347 Ribosomal protein L6 11 82 2.1E-17 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 SUPERFAMILY SSF56053 1 82 1.31E-23 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03555 63a9bf509726ec41bf7f9686df9c3d9c 177 SUPERFAMILY SSF56053 83 177 5.1E-37 T 06-07-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 409 769 8.7E-109 T 06-07-2017 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 SUPERFAMILY SSF53756 145 383 1.73E-14 T 06-07-2017 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Pfam PF13692 Glycosyl transferases group 1 229 346 1.9E-10 T 06-07-2017 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Pfam PF03275 UDP-galactopyranose mutase 555 752 1.2E-79 T 06-07-2017 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Gene3D G3DSA:3.40.50.720 409 487 1.3E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Gene3D G3DSA:3.40.50.720 727 769 1.3E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Gene3D G3DSA:3.40.50.720 590 663 1.3E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 Pfam PF13450 NAD(P)-binding Rossmann-like domain 413 480 1.5E-14 T 06-07-2017 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 SUPERFAMILY SSF51971 409 672 5.65E-46 T 06-07-2017 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 SUPERFAMILY SSF51971 737 771 5.65E-46 T 06-07-2017 CDO28_RS21855 8448661c6fec9378dd13b4047b84e2f8 783 SUPERFAMILY SSF54373 654 719 5.3E-21 T 06-07-2017 CDO28_RS24255 cab9758501a55260691fe02366121592 402 Gene3D G3DSA:3.30.390.10 14 162 1.2E-45 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS24255 cab9758501a55260691fe02366121592 402 SMART SM00922 174 274 1.2E-25 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS24255 cab9758501a55260691fe02366121592 402 SUPERFAMILY SSF54826 14 159 3.83E-32 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS24255 cab9758501a55260691fe02366121592 402 Gene3D G3DSA:3.20.20.120 163 387 1.0E-75 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24255 cab9758501a55260691fe02366121592 402 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 131 156 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS24255 cab9758501a55260691fe02366121592 402 Pfam PF13378 Enolase C-terminal domain-like 180 393 2.9E-63 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24255 cab9758501a55260691fe02366121592 402 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 156 3.8E-20 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS24255 cab9758501a55260691fe02366121592 402 SUPERFAMILY SSF51604 144 398 7.21E-74 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 35 287 2.1E-55 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 Gene3D G3DSA:3.40.190.100 129 240 1.8E-17 T 06-07-2017 CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 SUPERFAMILY SSF53850 28 304 7.94E-87 T 06-07-2017 CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 26 316 2.5E-144 T 06-07-2017 IPR017783 ABC transporter, choline, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 Gene3D G3DSA:3.40.190.10 241 304 3.8E-48 T 06-07-2017 CDO28_RS15215 69256680452c4450fef04b178dcceb27 318 Gene3D G3DSA:3.40.190.10 28 116 3.8E-48 T 06-07-2017 CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 Pfam PF00226 DnaJ domain 169 230 5.5E-8 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 Gene3D G3DSA:1.10.3680.10 32 171 1.2E-28 T 06-07-2017 IPR029024 TerB-like CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 Gene3D G3DSA:1.10.287.110 172 232 1.6E-10 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 Pfam PF05099 Tellurite resistance protein TerB 33 155 6.6E-32 T 06-07-2017 IPR007791 Co-chaperone DjlA, N-terminal CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 SMART SM00271 168 233 1.6E-12 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 SUPERFAMILY SSF46565 158 230 1.5E-15 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS16325 6fa1e7bd94839b2f871905e5f796b3ff 235 SUPERFAMILY SSF158682 27 182 6.02E-27 T 06-07-2017 IPR029024 TerB-like CDO28_RS00430 fb8a101b6e601761bf9cc60045a932a3 318 PIRSF PIRSF017082 1 318 2.5E-77 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS00430 fb8a101b6e601761bf9cc60045a932a3 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 305 1.7E-35 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS00430 fb8a101b6e601761bf9cc60045a932a3 318 Gene3D G3DSA:3.40.190.10 121 235 1.5E-4 T 06-07-2017 CDO28_RS00430 fb8a101b6e601761bf9cc60045a932a3 318 SUPERFAMILY SSF53850 28 279 3.26E-14 T 06-07-2017 CDO28_RS23160 22700a220d4f1181072c485330cfcf51 196 Pfam PF02474 Nodulation protein A (NodA) 3 196 2.2E-101 T 06-07-2017 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 CDO28_RS23160 22700a220d4f1181072c485330cfcf51 196 Hamap MF_00084 Nodulation protein A [nodA]. 1 196 52.745 T 06-07-2017 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 CDO28_RS23160 22700a220d4f1181072c485330cfcf51 196 TIGRFAM TIGR04245 nodulat_NodA: N-acyltransferase NodA 4 196 4.9E-106 T 06-07-2017 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 CDO28_RS23160 22700a220d4f1181072c485330cfcf51 196 ProSitePatterns PS01349 Nodulation protein nodA signature. 46 54 - T 06-07-2017 IPR020567 Nodulation protein A, NodA, conserved site GO:0016746 CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 Gene3D G3DSA:3.40.710.10 291 675 9.2E-105 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 SUPERFAMILY SSF56601 272 294 5.46E-109 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 SUPERFAMILY SSF56601 321 660 5.46E-109 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 SUPERFAMILY SSF53955 105 311 8.72E-70 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 Pfam PF00912 Transglycosylase 127 290 1.1E-59 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 Pfam PF00905 Penicillin binding protein transpeptidase domain 378 646 2.1E-26 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 Gene3D G3DSA:1.10.3810.10 125 290 1.1E-66 T 06-07-2017 CDO28_RS05480 1385c36b9630c5640bfdfdab6e1837c3 744 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 129 650 4.2E-174 T 06-07-2017 CDO28_RS31335 cc1d61b25b188bde9dffca8b903c8222 321 Gene3D G3DSA:3.40.718.10 2 312 5.0E-110 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS31335 cc1d61b25b188bde9dffca8b903c8222 321 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 311 34.271 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS31335 cc1d61b25b188bde9dffca8b903c8222 321 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 310 3.5E-103 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS31335 cc1d61b25b188bde9dffca8b903c8222 321 SUPERFAMILY SSF53659 3 312 6.3E-98 T 06-07-2017 CDO28_RS31335 cc1d61b25b188bde9dffca8b903c8222 321 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 60 307 3.0E-96 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 SUPERFAMILY SSF52540 285 497 4.75E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 Pfam PF00005 ABC transporter 35 186 1.1E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 Pfam PF00005 ABC transporter 287 439 1.8E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 SMART SM00382 294 488 3.5E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 SMART SM00382 44 234 6.8E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 Gene3D G3DSA:3.40.50.300 16 250 2.0E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 Gene3D G3DSA:3.40.50.300 286 498 1.3E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32920 57385cd44884fe95da2ae494dfbcc885 509 SUPERFAMILY SSF52540 18 244 5.43E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 4.9E-12 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 4.9E-12 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 4.9E-12 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 4.4E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 SUPERFAMILY SSF53474 3 275 1.4E-65 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25545 db94f3b8d54f9413d15f23b69c70ddf0 276 Gene3D G3DSA:3.40.50.1820 6 275 1.6E-70 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 SUPERFAMILY SSF51735 6 242 7.83E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.5E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 Pfam PF00106 short chain dehydrogenase 6 191 1.4E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04630 f37151f2c9ede0a185373db39173c932 254 Gene3D G3DSA:3.40.50.720 6 242 4.7E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04735 05c9342ae27376037e03070edf099739 390 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 3 354 5.7E-87 T 06-07-2017 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 CDO28_RS04735 05c9342ae27376037e03070edf099739 390 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 348 2.9E-57 T 06-07-2017 IPR005495 Permease LptG/LptF-related GO:0016021 CDO28_RS16155 4af77d0794fd10a54ea5364e626ca02a 175 SUPERFAMILY SSF52121 19 170 1.44E-44 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS16155 4af77d0794fd10a54ea5364e626ca02a 175 Gene3D G3DSA:3.40.50.960 22 170 2.1E-42 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS16155 4af77d0794fd10a54ea5364e626ca02a 175 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 22 170 21.903 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS16155 4af77d0794fd10a54ea5364e626ca02a 175 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 27 165 3.4E-34 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 Pfam PF02637 GatB domain 351 496 2.6E-51 T 06-07-2017 IPR018027 Asn/Gln amidotransferase GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 SUPERFAMILY SSF55931 23 319 2.55E-112 T 06-07-2017 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 21 497 37.346 T 06-07-2017 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 Pfam PF02934 GatB/GatE catalytic domain 24 312 1.7E-112 T 06-07-2017 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 21 496 2.0E-164 T 06-07-2017 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 168 182 - T 06-07-2017 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 SUPERFAMILY SSF89095 320 425 6.15E-36 T 06-07-2017 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 SMART SM00845 351 496 6.4E-81 T 06-07-2017 IPR018027 Asn/Gln amidotransferase GO:0016884 CDO28_RS03880 2c5f8efc3faf095a890fe1a30b884ddb 500 Gene3D G3DSA:1.10.10.410 442 496 9.0E-4 T 06-07-2017 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CDO28_RS29945 58430eacea41f71da78f76b900e80885 144 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 15 141 7.6E-15 T 06-07-2017 IPR006315 Outer membrane autotransporter barrel GO:0019867 CDO28_RS29945 58430eacea41f71da78f76b900e80885 144 SUPERFAMILY SSF103515 14 141 1.44E-16 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS29945 58430eacea41f71da78f76b900e80885 144 Gene3D G3DSA:2.40.128.130 17 141 1.8E-21 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS29945 58430eacea41f71da78f76b900e80885 144 Pfam PF03797 Autotransporter beta-domain 14 141 1.7E-16 T 06-07-2017 IPR005546 Autotransporter beta-domain CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 274 620 3.2E-107 T 06-07-2017 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 602 619 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 416 434 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 584 600 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 268 285 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 229 249 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 367 384 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 297 318 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 438 451 2.5E-44 T 06-07-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 Gene3D G3DSA:3.30.379.10 143 270 7.8E-9 T 06-07-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 145 270 1.7E-6 T 06-07-2017 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 SUPERFAMILY SSF51445 274 629 1.19E-114 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 SUPERFAMILY SSF55545 144 273 6.28E-11 T 06-07-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 CDO28_RS26875 bbba9f2e9c905f673914b99538dc20e1 639 Gene3D G3DSA:3.20.20.80 272 631 6.8E-119 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS26025 ffd9b1142495ad1b24e65799c0d5f568 60 SUPERFAMILY SSF47413 3 57 7.58E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS26025 ffd9b1142495ad1b24e65799c0d5f568 60 Pfam PF01381 Helix-turn-helix 12 56 1.8E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS26025 ffd9b1142495ad1b24e65799c0d5f568 60 Gene3D G3DSA:1.10.260.40 7 57 3.1E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27910 66ff522bcc8eb93b0929774a56446344 275 Gene3D G3DSA:1.10.3720.10 4 263 2.7E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27910 66ff522bcc8eb93b0929774a56446344 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 1.4E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27910 66ff522bcc8eb93b0929774a56446344 275 SUPERFAMILY SSF161098 3 275 4.39E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 142 1.7E-58 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 69.641 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 PIRSF PIRSF001399 1 147 2.2E-63 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 06-07-2017 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 SUPERFAMILY SSF52304 4 146 3.01E-60 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 Pfam PF01220 Dehydroquinase class II 5 140 6.2E-58 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 Gene3D G3DSA:3.40.50.9100 4 146 8.5E-64 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS03845 d5a90e5d77ebca50cdd0e289ef46e8cf 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 142 5.0E-77 T 06-07-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 SUPERFAMILY SSF111369 75 165 9.42E-5 T 06-07-2017 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 Gene3D G3DSA:2.40.50.100 70 100 3.9E-16 T 06-07-2017 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 Gene3D G3DSA:2.40.50.100 296 330 3.9E-16 T 06-07-2017 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 429 449 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 36 59 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 311 332 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 344 368 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 391 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 414 429 5.7E-43 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 Pfam PF13437 HlyD family secretion protein 298 404 1.9E-13 T 06-07-2017 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 27 450 1.9E-140 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS12365 a247ca179f424a272644d2e0ff9c4401 450 Pfam PF13533 Biotin-lipoyl like 76 101 1.3E-6 T 06-07-2017 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 245 7.6E-61 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 273 358 6.3E-10 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 Gene3D G3DSA:3.30.1360.120 130 233 3.8E-25 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 PIRSF PIRSF006487 2 376 8.5E-81 T 06-07-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 Gene3D G3DSA:3.30.70.1400 57 120 1.4E-19 T 06-07-2017 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 Gene3D G3DSA:2.40.30.110 290 357 4.0E-11 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 SUPERFAMILY SSF103025 5 284 7.22E-72 T 06-07-2017 CDO28_RS10105 6161d25e910370cebe0971fa3f1c75a7 377 SUPERFAMILY SSF101790 290 373 8.18E-12 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 SUPERFAMILY SSF158837 410 515 9.29E-19 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 SUPERFAMILY SSF158837 1 128 3.4E-44 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 SUPERFAMILY SSF158837 299 409 1.83E-24 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 SUPERFAMILY SSF158837 136 263 8.5E-18 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 SUPERFAMILY SSF158837 526 734 2.48E-54 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Pfam PF06748 Protein of unknown function (DUF1217) 564 719 3.2E-42 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Pfam PF06748 Protein of unknown function (DUF1217) 445 561 5.9E-15 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Pfam PF06748 Protein of unknown function (DUF1217) 61 173 1.7E-20 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Pfam PF06748 Protein of unknown function (DUF1217) 171 332 7.1E-7 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Pfam PF06748 Protein of unknown function (DUF1217) 328 452 3.8E-12 T 06-07-2017 IPR010626 Protein of unknown function DUF1217 CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Gene3D G3DSA:1.10.3700.10 1 129 3.3E-53 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Gene3D G3DSA:1.10.3700.10 136 213 2.4E-18 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Gene3D G3DSA:1.10.3700.10 250 394 5.9E-27 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Gene3D G3DSA:1.10.3700.10 524 735 5.0E-67 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS06255 df5fe2addd5d0babc18a2083c3812083 769 Gene3D G3DSA:1.10.3700.10 395 517 1.1E-21 T 06-07-2017 IPR023157 AGR-C-984p-like domain CDO28_RS18250 449ba320dcc7db2b2661a6442096a3bc 127 Pfam PF01527 Transposase 11 70 4.9E-15 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS18250 449ba320dcc7db2b2661a6442096a3bc 127 Gene3D G3DSA:1.10.10.10 11 57 1.7E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18250 449ba320dcc7db2b2661a6442096a3bc 127 SUPERFAMILY SSF48295 10 63 4.87E-11 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS06905 1a0eacc59ea520ccc978ac69f5db1d28 54 PIRSF PIRSF036466 1 54 6.5E-23 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS06905 1a0eacc59ea520ccc978ac69f5db1d28 54 Pfam PF07043 Protein of unknown function (DUF1328) 6 40 2.2E-14 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS06905 1a0eacc59ea520ccc978ac69f5db1d28 54 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 50 19.175 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS05000 cdf13ee7aa0a33c9ca6ce697e6c41a35 177 SUPERFAMILY SSF52799 62 136 9.48E-14 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS05000 cdf13ee7aa0a33c9ca6ce697e6c41a35 177 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 87 97 - T 06-07-2017 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 CDO28_RS05000 cdf13ee7aa0a33c9ca6ce697e6c41a35 177 Gene3D G3DSA:3.90.190.10 16 134 1.7E-9 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS18340 4ebacb4d6bf518a6881d7cb983ef9ef3 87 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 14 82 4.8E-7 T 06-07-2017 IPR018754 Protein of unknown function DUF2285 CDO28_RS03550 fdfbd62786211a9b4410aae791beaaaa 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 5 120 2.4E-41 T 06-07-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03550 fdfbd62786211a9b4410aae791beaaaa 120 SUPERFAMILY SSF53137 4 118 9.38E-51 T 06-07-2017 CDO28_RS03550 fdfbd62786211a9b4410aae791beaaaa 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 120 8.4E-44 T 06-07-2017 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03550 fdfbd62786211a9b4410aae791beaaaa 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 28.477 T 06-07-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03550 fdfbd62786211a9b4410aae791beaaaa 120 Gene3D G3DSA:3.30.420.100 25 120 2.6E-39 T 06-07-2017 CDO28_RS30225 fe69fc2a1f8ed9959507bd154d5aa21c 261 Gene3D G3DSA:3.40.810.20 2 244 2.4E-86 T 06-07-2017 CDO28_RS30225 fe69fc2a1f8ed9959507bd154d5aa21c 261 SUPERFAMILY SSF100950 2 245 3.77E-70 T 06-07-2017 CDO28_RS30225 fe69fc2a1f8ed9959507bd154d5aa21c 261 Pfam PF01144 Coenzyme A transferase 7 215 9.9E-46 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS30225 fe69fc2a1f8ed9959507bd154d5aa21c 261 SMART SM00882 8 217 1.6E-30 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 Gene3D G3DSA:1.20.58.410 1 78 2.3E-19 T 06-07-2017 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 SMART SM00937 49 159 2.1E-54 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 Pfam PF00472 RF-1 domain 193 302 4.3E-41 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 SUPERFAMILY SSF75620 2 330 3.53E-129 T 06-07-2017 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 209 225 - T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 Gene3D G3DSA:3.30.160.20 192 269 5.3E-38 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 330 36.723 T 06-07-2017 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 328 7.3E-148 T 06-07-2017 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 CDO28_RS03780 08c73037af966af4ff7f3d40d45f6515 342 Pfam PF03462 PCRF domain 1 184 2.0E-56 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 292 308 8.9E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 292 8.9E-7 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 Gene3D G3DSA:1.10.10.60 204 259 1.3E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 SMART SM00342 224 308 6.3E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 Gene3D G3DSA:1.10.10.60 260 309 5.9E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 Pfam PF12833 Helix-turn-helix domain 231 309 3.4E-18 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS20505 2315cde2a302bc8417287729d1fd4599 314 SUPERFAMILY SSF46689 259 309 5.38E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 SUPERFAMILY SSF88946 9 93 1.96E-17 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 Gene3D G3DSA:1.10.1740.10 7 81 1.0E-18 T 06-07-2017 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 Pfam PF04542 Sigma-70 region 2 17 79 1.6E-13 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 Pfam PF08281 Sigma-70, region 4 108 159 8.4E-14 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 161 4.9E-22 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 SUPERFAMILY SSF88659 105 164 8.07E-13 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS15345 1756b949256f85264709a28703ef45c9 171 Gene3D G3DSA:1.10.10.10 106 165 2.1E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17785 d052a6008f04ed47ebd017acb4dfb08f 191 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 160 3.5E-23 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 18 108 3.6E-16 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 Gene3D G3DSA:3.20.20.120 116 372 1.4E-74 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 SUPERFAMILY SSF54826 1 112 5.56E-26 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 SMART SM00922 154 264 3.6E-13 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 Pfam PF13378 Enolase C-terminal domain-like 159 384 5.5E-52 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 SUPERFAMILY SSF51604 153 391 2.49E-68 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 SUPERFAMILY SSF51604 96 120 2.49E-68 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20860 b082db3a1f4288e2e2a7b718b8129fc7 396 Gene3D G3DSA:3.30.390.10 1 115 4.5E-33 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 Pfam PF00171 Aldehyde dehydrogenase family 23 489 1.0E-166 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 Gene3D G3DSA:3.40.605.10 13 266 5.6E-93 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 SUPERFAMILY SSF53720 8 494 1.57E-163 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 290 301 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS15465 f300474e025124f31126921cb8af2b33 502 Gene3D G3DSA:3.40.309.10 267 465 9.4E-62 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Gene3D G3DSA:3.40.50.970 325 529 1.7E-74 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Pfam PF02779 Transketolase, pyrimidine binding domain 352 522 2.1E-44 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 SUPERFAMILY SSF52518 5 316 1.42E-115 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 ProSitePatterns PS00802 Transketolase signature 2. 465 481 - T 06-07-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 SUPERFAMILY SSF52922 532 659 2.22E-40 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Gene3D G3DSA:3.40.50.920 536 659 5.1E-39 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 SUPERFAMILY SSF52518 339 521 9.64E-66 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Gene3D G3DSA:3.40.50.970 5 317 4.4E-123 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 330 6.4E-143 T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 657 1.7E-251 T 06-07-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 SMART SM00861 352 524 2.5E-66 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS13300 d91c6ce08a1b4ce1d50a2d7e48e45eec 660 Pfam PF02780 Transketolase, C-terminal domain 545 650 2.4E-11 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 PIRSF PIRSF000124 1 435 2.2E-142 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 416 2.2E-138 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 SUPERFAMILY SSF51735 1 190 1.04E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 PIRSF PIRSF500134 1 437 4.7E-181 T 06-07-2017 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 SUPERFAMILY SSF48179 203 296 9.01E-32 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 319 419 2.7E-32 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 178 2.5E-69 T 06-07-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 295 2.2E-36 T 06-07-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Gene3D G3DSA:1.20.5.100 207 233 3.1E-18 T 06-07-2017 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Gene3D G3DSA:3.40.50.720 1 206 6.8E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 SUPERFAMILY SSF52413 304 430 4.05E-39 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 SMART SM00984 319 420 3.0E-50 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS05100 b6823704ec4bea3e725ac1cff2c60488 437 Gene3D G3DSA:3.40.50.720 234 436 1.6E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03205 d5f97eb31abd850a4bbea8f91daba8e8 201 SMART SM00867 41 199 2.7E-30 T 06-07-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDO28_RS03205 d5f97eb31abd850a4bbea8f91daba8e8 201 Pfam PF04264 YceI-like domain 46 195 1.5E-22 T 06-07-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDO28_RS03205 d5f97eb31abd850a4bbea8f91daba8e8 201 SUPERFAMILY SSF101874 38 200 8.76E-32 T 06-07-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDO28_RS03205 d5f97eb31abd850a4bbea8f91daba8e8 201 Gene3D G3DSA:2.40.128.110 38 200 8.4E-33 T 06-07-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Gene3D G3DSA:1.10.150.20 68 137 5.5E-27 T 06-07-2017 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Pfam PF01330 RuvA N terminal domain 1 62 5.7E-19 T 06-07-2017 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 SUPERFAMILY SSF47781 65 134 1.46E-20 T 06-07-2017 IPR010994 RuvA domain 2-like CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 SUPERFAMILY SSF50249 1 63 5.14E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 29.5 T 06-07-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Gene3D G3DSA:1.10.8.10 157 203 3.2E-11 T 06-07-2017 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Pfam PF14520 Helix-hairpin-helix domain 72 129 3.8E-14 T 06-07-2017 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Gene3D G3DSA:2.40.50.140 1 65 1.3E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 SUPERFAMILY SSF46929 158 204 4.05E-9 T 06-07-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 183 5.1E-38 T 06-07-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CDO28_RS13370 d71525b93e9cd47265d717a38fd3f03e 205 Pfam PF07499 RuvA, C-terminal domain 157 204 2.5E-12 T 06-07-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CDO28_RS15685 99a39bd51d78501378c421d658feb4ba 118 SUPERFAMILY SSF53167 6 116 3.15E-5 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 Gene3D G3DSA:3.40.50.1000 77 214 2.1E-43 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 SUPERFAMILY SSF56784 14 211 3.85E-42 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 Gene3D G3DSA:1.10.150.240 30 76 1.3E-5 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 184 4.7E-16 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 ProSitePatterns PS01228 Hypothetical cof family signature 1. 15 26 - T 06-07-2017 IPR000150 Cof protein GO:0016787 CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 185 8.2E-18 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS27140 81e7c5aa2634115254295973bc18817c 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 87 179 1.9E-6 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 SUPERFAMILY SSF48113 17 419 1.06E-151 T 06-07-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 250 260 - T 06-07-2017 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.420.10 301 398 9.7E-45 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.420.10 242 265 9.7E-45 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Pfam PF00141 Peroxidase 393 701 1.4E-37 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Pfam PF00141 Peroxidase 68 386 7.4E-48 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 64 89 3.2E-54 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 49 62 3.2E-54 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 258 281 3.2E-54 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 23 45 3.2E-54 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 471 497 3.2E-54 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Hamap MF_01961 Catalase-peroxidase [katG]. 6 727 42.071 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 ProSitePatterns PS00436 Peroxidases active site signature. 87 98 - T 06-07-2017 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.520.10 44 241 7.4E-72 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.420.10 580 701 1.7E-41 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00458 Haem peroxidase superfamily signature 87 101 1.5E-18 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00458 Haem peroxidase superfamily signature 165 177 1.5E-18 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00458 Haem peroxidase superfamily signature 147 164 1.5E-18 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00458 Haem peroxidase superfamily signature 309 324 1.5E-18 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 PRINTS PR00458 Haem peroxidase superfamily signature 250 265 1.5E-18 T 06-07-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 10 727 0.0 T 06-07-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.520.10 423 579 2.2E-65 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 Gene3D G3DSA:1.10.520.10 705 726 2.2E-65 T 06-07-2017 CDO28_RS20625 16c37e333a48c47a10561b928ffbec3a 727 SUPERFAMILY SSF48113 421 726 1.43E-109 T 06-07-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 CDO28_RS04975 fd81ee53ebf87e42007dcb83d7a8ec44 147 TIGRFAM TIGR02301 TIGR02301: TIGR02301 family protein 25 145 1.4E-53 T 06-07-2017 IPR012645 Conserved hypothetical protein CHP02301 CDO28_RS04975 fd81ee53ebf87e42007dcb83d7a8ec44 147 Pfam PF09539 Protein of unknown function (DUF2385) 49 145 1.2E-34 T 06-07-2017 IPR012645 Conserved hypothetical protein CHP02301 CDO28_RS12035 78e11c76efa20678cbc1b9817f44bfdb 77 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 7 65 1.1E-27 T 06-07-2017 IPR021074 Formate dehydrogenase, delta subunit CDO28_RS18475 2d15c37f26851b5077ee2e7a68626ca6 229 Pfam PF04335 VirB8 protein 23 226 2.5E-67 T 06-07-2017 IPR007430 Bacterial virulence protein VirB8 GO:0016020 CDO28_RS18475 2d15c37f26851b5077ee2e7a68626ca6 229 SUPERFAMILY SSF54427 94 228 4.82E-28 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 Pfam PF01883 Domain of unknown function DUF59 7 75 3.1E-15 T 06-07-2017 IPR002744 Domain of unknown function DUF59 CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 SUPERFAMILY SSF52540 124 368 3.11E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 121 363 1.3E-100 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 Gene3D G3DSA:3.40.50.300 114 363 1.7E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 Hamap MF_02040 Iron-sulfur cluster carrier protein. 116 364 36.971 T 06-07-2017 IPR019591 Mrp/NBP35 ATP-binding protein CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 SUPERFAMILY SSF117916 3 88 1.73E-17 T 06-07-2017 CDO28_RS06440 df290a7c2a8102226f01a2bda8f82466 384 ProSitePatterns PS01215 Mrp family signature. 227 243 - T 06-07-2017 IPR000808 Mrp, conserved site GO:0005524 CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 Pfam PF02195 ParB-like nuclease domain 77 166 7.2E-16 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 SUPERFAMILY SSF109709 161 234 1.14E-6 T 06-07-2017 CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 74 243 9.7E-32 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 Pfam PF07506 RepB plasmid partitioning protein 168 339 1.9E-21 T 06-07-2017 IPR011111 RepB plasmid partition CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 Gene3D G3DSA:3.90.1530.10 74 172 6.0E-14 T 06-07-2017 CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 SUPERFAMILY SSF110849 76 169 1.5E-17 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 3 341 2.4E-113 T 06-07-2017 IPR017819 Plasmid partitioning protein, RepB CDO28_RS34000 ba9b388ef4c66fd3f1ff451674b9fe7d 344 SMART SM00470 76 167 4.3E-19 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS15115 ab0c568388c666b90e0aa753c45fb800 130 SUPERFAMILY SSF46458 8 128 6.78E-32 T 06-07-2017 IPR009050 Globin-like CDO28_RS15115 ab0c568388c666b90e0aa753c45fb800 130 Gene3D G3DSA:1.10.490.10 6 129 2.4E-36 T 06-07-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CDO28_RS15115 ab0c568388c666b90e0aa753c45fb800 130 Pfam PF01152 Bacterial-like globin 8 128 1.8E-48 T 06-07-2017 IPR001486 Truncated hemoglobin GO:0019825 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 39 484 2.3E-209 T 06-07-2017 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 Pfam PF00171 Aldehyde dehydrogenase family 31 485 1.1E-165 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 Gene3D G3DSA:3.40.309.10 278 461 1.0E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 SUPERFAMILY SSF53720 13 489 8.77E-166 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 292 303 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS22920 8569d32906ae83c754ceaa37e034aaee 490 Gene3D G3DSA:3.40.605.10 22 277 3.8E-94 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS13235 26bc3a29fa9fc1d1ebd98065b0050106 342 SUPERFAMILY SSF103088 209 338 1.15E-29 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS13235 26bc3a29fa9fc1d1ebd98065b0050106 342 Gene3D G3DSA:3.30.1330.60 212 341 3.9E-34 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS13235 26bc3a29fa9fc1d1ebd98065b0050106 342 Pfam PF00691 OmpA family 226 333 1.3E-18 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS17245 a9397a884dda2f9bb36d1e2a4aec418a 51 Pfam PF11752 Protein of unknown function (DUF3309) 3 51 3.4E-24 T 06-07-2017 IPR021738 Protein of unknown function DUF3309 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 SUPERFAMILY SSF53067 256 502 2.99E-51 T 06-07-2017 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 Gene3D G3DSA:3.30.420.40 254 502 1.5E-44 T 06-07-2017 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 250 6.4E-54 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 SUPERFAMILY SSF53067 4 250 8.64E-61 T 06-07-2017 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 456 7.4E-27 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 PIRSF PIRSF000538 2 508 3.5E-122 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 06-07-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS14365 f10f6a58c7fdc252c38a40621eaf8585 515 Gene3D G3DSA:3.30.420.40 2 250 4.1E-58 T 06-07-2017 CDO28_RS07210 b2bbeda2c137664771b9e42cc54ea29f 88 PIRSF PIRSF004669 1 88 1.3E-23 T 06-07-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CDO28_RS07210 b2bbeda2c137664771b9e42cc54ea29f 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.9E-24 T 06-07-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CDO28_RS07210 b2bbeda2c137664771b9e42cc54ea29f 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.4E-16 T 06-07-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CDO28_RS07210 b2bbeda2c137664771b9e42cc54ea29f 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.4E-16 T 06-07-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CDO28_RS07210 b2bbeda2c137664771b9e42cc54ea29f 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.4E-16 T 06-07-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 Gene3D G3DSA:2.60.120.460 2 138 4.2E-51 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 137 3.0E-40 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 Pfam PF01894 Uncharacterised protein family UPF0047 18 137 7.3E-36 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 PIRSF PIRSF004681 1 140 9.6E-46 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 102 120 - T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS15675 3ca7d60dc1a4ac5734d190170e0c9a9a 140 SUPERFAMILY SSF111038 2 139 2.09E-45 T 06-07-2017 IPR001602 Uncharacterised protein family UPF0047 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 Gene3D G3DSA:3.40.605.10 3 260 1.7E-87 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 Gene3D G3DSA:3.40.309.10 261 443 2.9E-62 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 Pfam PF00171 Aldehyde dehydrogenase family 19 478 1.2E-133 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 SUPERFAMILY SSF53720 2 482 5.89E-147 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS06990 879d64202a7ea385c9dbe27e2ccd2881 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 6 482 3.9E-195 T 06-07-2017 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 CDO28_RS14780 9521d629f17171bf88f356e8b1aafbaf 461 Pfam PF11862 Domain of unknown function (DUF3382) 19 114 2.7E-17 T 06-07-2017 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal CDO28_RS14780 9521d629f17171bf88f356e8b1aafbaf 461 Pfam PF02653 Branched-chain amino acid transport system / permease component 134 428 3.2E-48 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS16800 4d3d09501e4d09043785cb4fbe3195cb 362 Pfam PF05145 Putative ammonia monooxygenase 49 358 8.9E-89 T 06-07-2017 IPR007820 AbrB family GO:0010468|GO:0016021 CDO28_RS16800 4d3d09501e4d09043785cb4fbe3195cb 362 PIRSF PIRSF038991 17 362 1.7E-72 T 06-07-2017 IPR007820 AbrB family GO:0010468|GO:0016021 CDO28_RS16800 4d3d09501e4d09043785cb4fbe3195cb 362 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 203 357 1.8E-43 T 06-07-2017 IPR017516 AbrB duplication CDO28_RS16800 4d3d09501e4d09043785cb4fbe3195cb 362 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 26 181 2.5E-37 T 06-07-2017 IPR017516 AbrB duplication CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 Gene3D G3DSA:3.30.360.10 146 345 4.3E-38 T 06-07-2017 CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 Gene3D G3DSA:3.20.20.100 376 668 3.9E-53 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 SUPERFAMILY SSF51430 374 669 5.11E-54 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 SUPERFAMILY SSF51735 5 156 1.89E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 Pfam PF00248 Aldo/keto reductase family 388 664 1.9E-41 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 SUPERFAMILY SSF55347 130 308 6.05E-36 T 06-07-2017 CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 3.3E-21 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS20405 687feb05868d80cb0a2224946a3f96e0 677 Gene3D G3DSA:3.40.50.720 4 145 1.6E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 Gene3D G3DSA:3.30.450.40 77 232 1.8E-30 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 Pfam PF01614 Bacterial transcriptional regulator 123 235 9.0E-12 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 Pfam PF09339 IclR helix-turn-helix domain 8 59 2.0E-11 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 SUPERFAMILY SSF46785 7 79 5.37E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 Gene3D G3DSA:1.10.10.10 6 76 2.8E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 SUPERFAMILY SSF55781 79 232 2.38E-28 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS32520 4d5e6d29a506aee964171dc539bd1905 239 SMART SM00346 6 95 1.6E-7 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 SUPERFAMILY SSF51569 3 298 2.38E-79 T 06-07-2017 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 Pfam PF00682 HMGL-like 5 276 2.3E-52 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 6 530 5.0E-184 T 06-07-2017 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 203 216 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 SMART SM00917 380 525 7.6E-38 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 Pfam PF08502 LeuA allosteric (dimerisation) domain 380 524 6.2E-30 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 SUPERFAMILY SSF110921 421 521 3.4E-21 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS04925 b027e4083526fcaf8b13abc797efe360 538 Gene3D G3DSA:3.20.20.70 2 353 4.5E-117 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.811 T 06-07-2017 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.9E-49 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 SUPERFAMILY SSF54111 1 100 3.01E-46 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 Pfam PF00547 Urease, gamma subunit 1 99 3.9E-48 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 Gene3D G3DSA:3.30.280.10 1 100 1.5E-50 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 PIRSF PIRSF001223 1 100 8.1E-52 T 06-07-2017 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14825 64cdab9fee7331c7b7127c240136278d 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 3.0E-46 T 06-07-2017 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 SUPERFAMILY SSF51161 4 183 7.62E-55 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 Gene3D G3DSA:2.160.10.10 3 181 9.3E-60 T 06-07-2017 CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 131 166 8.2E-11 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 Pfam PF12464 Maltose acetyltransferase 8 59 1.4E-12 T 06-07-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 SMART SM01266 6 60 5.3E-18 T 06-07-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CDO28_RS22790 2abbad246d8dafa9574658171ea55a88 183 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 Hamap MF_01518 Adenine deaminase [ade]. 23 591 36.804 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 TIGRFAM TIGR01178 ade: adenine deaminase 23 590 6.2E-154 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 Pfam PF01979 Amidohydrolase family 76 363 1.1E-24 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 Pfam PF13382 Adenine deaminase C-terminal domain 421 588 1.3E-59 T 06-07-2017 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 SUPERFAMILY SSF51556 80 329 1.68E-23 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 SUPERFAMILY SSF51338 333 377 1.49E-21 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 SUPERFAMILY SSF51338 15 80 1.49E-21 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 Gene3D G3DSA:2.30.40.10 15 115 3.6E-19 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25230 0881cfc72685c6a41538b706b3d41d25 595 Gene3D G3DSA:2.30.40.10 277 370 7.7E-16 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS00650 8164ea281ed5d995c0badddd3d659722 239 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 6 226 3.7E-62 T 06-07-2017 IPR005224 Sugar fermentation stimulation protein CDO28_RS00650 8164ea281ed5d995c0badddd3d659722 239 Pfam PF03749 Sugar fermentation stimulation protein 13 223 2.6E-70 T 06-07-2017 IPR005224 Sugar fermentation stimulation protein CDO28_RS00650 8164ea281ed5d995c0badddd3d659722 239 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 233 54.975 T 06-07-2017 IPR005224 Sugar fermentation stimulation protein CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.2E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 SUPERFAMILY SSF46785 3 85 3.8E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 SUPERFAMILY SSF53850 89 293 1.79E-37 T 06-07-2017 CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 Gene3D G3DSA:3.40.190.10 180 261 2.3E-19 T 06-07-2017 CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 Pfam PF03466 LysR substrate binding domain 88 293 6.6E-35 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 Gene3D G3DSA:1.10.10.10 2 81 1.3E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15615 a8db47dd0b15384295bdc09813b1c074 296 Gene3D G3DSA:3.40.190.10 92 179 1.3E-17 T 06-07-2017 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 15 142 5.3E-23 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 SUPERFAMILY SSF51735 11 177 3.94E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 157 229 7.2E-6 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 SUPERFAMILY SSF55347 151 334 1.06E-35 T 06-07-2017 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 Gene3D G3DSA:3.30.360.10 165 291 2.4E-37 T 06-07-2017 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 Gene3D G3DSA:3.30.360.10 337 393 2.4E-37 T 06-07-2017 CDO28_RS12645 72214f3fec6f60a93e251298bf72f1d3 394 Gene3D G3DSA:3.40.50.720 10 164 5.0E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 15 175 5.4E-42 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 ProSitePatterns PS01134 FtsZ protein signature 1. 46 80 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 SUPERFAMILY SSF52490 14 210 5.36E-69 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 SMART SM00865 209 327 1.8E-54 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 SUPERFAMILY SSF55307 207 321 1.81E-40 T 06-07-2017 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 ProSitePatterns PS01135 FtsZ protein signature 2. 99 120 - T 06-07-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 SMART SM00864 15 207 1.6E-109 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 Gene3D G3DSA:3.40.50.1440 15 216 3.0E-93 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 Pfam PF12327 FtsZ family, C-terminal domain 224 319 1.2E-36 T 06-07-2017 IPR024757 Cell division protein FtsZ, C-terminal CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 Gene3D G3DSA:3.30.1330.20 217 322 1.8E-46 T 06-07-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 330 1.8E-122 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 338 36.431 T 06-07-2017 IPR000158 Cell division protein FtsZ GO:0005525 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 PRINTS PR00423 Cell division protein FtsZ signature 128 149 1.8E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 PRINTS PR00423 Cell division protein FtsZ signature 100 120 1.8E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 PRINTS PR00423 Cell division protein FtsZ signature 191 213 1.8E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS17050 0480755415c6ffac580e35a67124383c 346 PRINTS PR00423 Cell division protein FtsZ signature 214 235 1.8E-48 T 06-07-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 Gene3D G3DSA:3.40.50.300 2 210 9.2E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 SMART SM00490 257 341 8.1E-32 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 Gene3D G3DSA:3.40.50.300 211 373 5.1E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 SUPERFAMILY SSF52540 74 357 1.18E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 Pfam PF00271 Helicase conserved C-terminal domain 232 341 1.7E-29 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 Pfam PF00270 DEAD/DEAH box helicase 26 195 4.5E-49 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 06-07-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CDO28_RS00550 dc1f24700133e0ea7eacfad94ce9e5ad 499 SMART SM00487 21 221 1.8E-64 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS14580 f4552af2dde2d4271b3c0bd9e18e51f4 240 Gene3D G3DSA:1.20.120.80 37 240 5.9E-53 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14580 f4552af2dde2d4271b3c0bd9e18e51f4 240 SUPERFAMILY SSF81452 26 240 1.24E-51 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14580 f4552af2dde2d4271b3c0bd9e18e51f4 240 Pfam PF00510 Cytochrome c oxidase subunit III 42 240 7.9E-19 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 12 439 1.7E-150 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 307 319 2.9E-6 T 06-07-2017 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 2.9E-6 T 06-07-2017 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 215 236 2.9E-6 T 06-07-2017 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 413 432 2.9E-6 T 06-07-2017 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 469 18.42 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDO28_RS04060 ed07ed7524f1df6b940e1c2c0d71c4b4 480 Pfam PF00361 Proton-conducting membrane transporter 125 419 8.7E-89 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 Gene3D G3DSA:3.10.129.10 10 122 1.5E-49 T 06-07-2017 IPR029069 HotDog domain CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 18 289 7.8E-95 T 06-07-2017 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-75105 CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 Pfam PF13622 Thioesterase-like superfamily 38 288 9.6E-59 T 06-07-2017 CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 SUPERFAMILY SSF54637 11 120 9.54E-43 T 06-07-2017 IPR029069 HotDog domain CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 Gene3D G3DSA:3.10.129.10 130 291 1.3E-57 T 06-07-2017 IPR029069 HotDog domain CDO28_RS11405 ecb405a82e78cf24d75f2b904eb50f77 294 SUPERFAMILY SSF54637 122 290 3.32E-58 T 06-07-2017 IPR029069 HotDog domain CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 SUPERFAMILY SSF102114 135 373 9.61E-13 T 06-07-2017 CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 Pfam PF04055 Radical SAM superfamily 139 321 7.0E-16 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 Gene3D G3DSA:3.20.20.70 135 370 3.1E-15 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 PIRSF PIRSF006004 19 403 1.6E-144 T 06-07-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 25 391 1.9E-118 T 06-07-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS11270 203c727ae961d4f08104ae7bbfa28cbd 411 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 26 391 72.181 T 06-07-2017 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS00110 7afd68ad8c41d10ea314b2c28f3d36fd 204 Gene3D G3DSA:3.40.50.10610 28 204 2.0E-53 T 06-07-2017 IPR005586 ABC-type transport auxiliary lipoprotein component CDO28_RS00110 7afd68ad8c41d10ea314b2c28f3d36fd 204 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 41 197 2.3E-32 T 06-07-2017 IPR005586 ABC-type transport auxiliary lipoprotein component CDO28_RS00110 7afd68ad8c41d10ea314b2c28f3d36fd 204 SUPERFAMILY SSF159594 38 202 6.54E-42 T 06-07-2017 CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 Gene3D G3DSA:1.10.10.10 6 89 3.0E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 SMART SM00418 9 88 1.1E-17 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 1.5E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 1.5E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 1.5E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 SUPERFAMILY SSF46785 5 192 1.36E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05940 a3db52635971d1189ce9ad278b6ce4f4 227 Pfam PF12840 Helix-turn-helix domain 11 68 6.1E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28585 7bccb4c712411b0713b7ef3dee6e7736 125 SMART SM00448 6 114 2.9E-17 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS28585 7bccb4c712411b0713b7ef3dee6e7736 125 Gene3D G3DSA:3.40.50.2300 5 122 3.7E-26 T 06-07-2017 CDO28_RS28585 7bccb4c712411b0713b7ef3dee6e7736 125 SUPERFAMILY SSF52172 6 121 3.98E-24 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS28585 7bccb4c712411b0713b7ef3dee6e7736 125 Pfam PF00072 Response regulator receiver domain 8 114 4.7E-16 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32325 56e2275d5a25640505341f89fc2f6b44 313 SUPERFAMILY SSF53822 29 305 4.54E-79 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32325 56e2275d5a25640505341f89fc2f6b44 313 Gene3D G3DSA:3.40.50.2300 145 305 2.7E-53 T 06-07-2017 CDO28_RS32325 56e2275d5a25640505341f89fc2f6b44 313 Pfam PF13407 Periplasmic binding protein domain 30 284 3.8E-59 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS32325 56e2275d5a25640505341f89fc2f6b44 313 Gene3D G3DSA:3.40.50.2300 30 144 2.4E-31 T 06-07-2017 CDO28_RS08935 3f434b5b5da50276c99450944982e833 291 Gene3D G3DSA:3.40.50.720 1 54 1.3E-7 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08935 3f434b5b5da50276c99450944982e833 291 Pfam PF01370 NAD dependent epimerase/dehydratase family 84 166 8.0E-5 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS08935 3f434b5b5da50276c99450944982e833 291 SUPERFAMILY SSF51735 1 280 2.25E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08935 3f434b5b5da50276c99450944982e833 291 Gene3D G3DSA:3.40.50.720 100 230 3.0E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24300 0005ecb548ef39373db6cfb05ea4b63b 406 Gene3D G3DSA:3.40.190.10 148 335 2.8E-27 T 06-07-2017 CDO28_RS24300 0005ecb548ef39373db6cfb05ea4b63b 406 SUPERFAMILY SSF53850 53 401 2.5E-57 T 06-07-2017 CDO28_RS24300 0005ecb548ef39373db6cfb05ea4b63b 406 Pfam PF13416 Bacterial extracellular solute-binding protein 51 336 1.3E-26 T 06-07-2017 CDO28_RS24300 0005ecb548ef39373db6cfb05ea4b63b 406 Gene3D G3DSA:3.40.190.10 25 147 8.1E-17 T 06-07-2017 CDO28_RS30910 d600071e852e897a7913a3c90ac42f6f 86 Gene3D G3DSA:1.10.10.60 12 62 9.8E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30910 d600071e852e897a7913a3c90ac42f6f 86 Pfam PF13518 Helix-turn-helix domain 18 61 7.6E-10 T 06-07-2017 CDO28_RS30910 d600071e852e897a7913a3c90ac42f6f 86 SUPERFAMILY SSF46689 9 57 2.15E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS02740 9fbf92be3ff62730eecc6c15a87fad21 344 SUPERFAMILY SSF51445 12 323 4.53E-68 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS02740 9fbf92be3ff62730eecc6c15a87fad21 344 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 37 306 5.7E-47 T 06-07-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CDO28_RS02740 9fbf92be3ff62730eecc6c15a87fad21 344 Gene3D G3DSA:3.20.20.300 13 320 7.8E-68 T 06-07-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CDO28_RS23220 d78640edf558d02af48894273f844678 186 Gene3D G3DSA:3.30.70.270 57 155 2.9E-34 T 06-07-2017 CDO28_RS23220 d78640edf558d02af48894273f844678 186 SUPERFAMILY SSF56672 1 159 2.94E-67 T 06-07-2017 CDO28_RS23220 d78640edf558d02af48894273f844678 186 Pfam PF00817 impB/mucB/samB family 1 144 6.6E-47 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS29645 4cb8ebc676562bf859d47ea773062b59 425 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 259 417 5.4E-42 T 06-07-2017 IPR031475 Putative nucleotide-binding C-terminal domain CDO28_RS29645 4cb8ebc676562bf859d47ea773062b59 425 Pfam PF07005 Putative sugar-binding N-terminal domain 6 228 1.3E-63 T 06-07-2017 IPR010737 Putative sugar-binding, N-terminal domain CDO28_RS29645 4cb8ebc676562bf859d47ea773062b59 425 SUPERFAMILY SSF142764 5 424 5.62E-120 T 06-07-2017 CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 Gene3D G3DSA:1.10.357.10 28 199 2.9E-31 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 Pfam PF00440 Bacterial regulatory proteins, tetR family 38 84 4.6E-14 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 SUPERFAMILY SSF48498 106 213 3.16E-7 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 51 2.2E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 59 82 2.2E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS20650 53be8f1179210b2f4fcfc4868c4b9cc2 232 SUPERFAMILY SSF46689 25 106 9.98E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27205 42e2912c4994eb1037b88d54adf1de61 417 SUPERFAMILY SSF53756 17 404 3.09E-49 T 06-07-2017 CDO28_RS27205 42e2912c4994eb1037b88d54adf1de61 417 Pfam PF12000 Gkycosyl transferase family 4 group 27 194 6.9E-54 T 06-07-2017 IPR022623 Domain of unknown function DUF3495 CDO28_RS27205 42e2912c4994eb1037b88d54adf1de61 417 Gene3D G3DSA:3.40.50.2000 180 381 1.4E-15 T 06-07-2017 CDO28_RS27205 42e2912c4994eb1037b88d54adf1de61 417 Pfam PF00534 Glycosyl transferases group 1 212 374 3.0E-16 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 291 - T 06-07-2017 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 SUPERFAMILY SSF56059 1 248 1.49E-75 T 06-07-2017 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Pfam PF08442 ATP-grasp domain 2 212 1.0E-70 T 06-07-2017 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Gene3D G3DSA:3.40.50.261 251 393 7.1E-67 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 395 2.2E-150 T 06-07-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 PIRSF PIRSF001554 1 398 3.9E-146 T 06-07-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 396 40.96 T 06-07-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 SUPERFAMILY SSF52210 249 395 1.7E-55 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Gene3D G3DSA:3.30.1490.20 22 105 6.2E-32 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Pfam PF00549 CoA-ligase 272 391 1.1E-27 T 06-07-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11790 9640540af766ffd6ac75dc9f76dc106e 398 Gene3D G3DSA:3.30.470.20 106 249 1.7E-53 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS15560 ed19f4545fb1754c5c10d61df22352e9 213 SMART SM00849 13 194 4.3E-37 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS15560 ed19f4545fb1754c5c10d61df22352e9 213 Pfam PF00753 Metallo-beta-lactamase superfamily 14 180 6.8E-29 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS15560 ed19f4545fb1754c5c10d61df22352e9 213 Gene3D G3DSA:3.60.15.10 9 211 1.4E-54 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS15560 ed19f4545fb1754c5c10d61df22352e9 213 SUPERFAMILY SSF56281 11 211 1.15E-53 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 13 53 3.0E-16 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 SUPERFAMILY SSF116842 7 69 5.89E-20 T 06-07-2017 CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 13 67 1.6E-22 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 13 73 15.62 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 Gene3D G3DSA:1.10.287.1040 9 72 1.0E-24 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS06165 3d4a78d6746c77b5ae7ac72f4d217832 83 Pfam PF02609 Exonuclease VII small subunit 14 65 4.9E-19 T 06-07-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82714 195 275 2.88E-11 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Gene3D G3DSA:3.30.2090.10 195 274 1.1E-12 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Gene3D G3DSA:3.30.2090.10 713 795 8.8E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Gene3D G3DSA:3.30.70.1430 50 150 1.3E-22 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Gene3D G3DSA:1.10.3850.10 284 501 2.3E-49 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Gene3D G3DSA:1.10.3850.10 806 1017 6.2E-50 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82693 50 146 1.22E-20 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82714 713 797 6.93E-14 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82866 799 1021 1.83E-42 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 20 44 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 48 66 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.1E-29 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 Pfam PF00873 AcrB/AcrD/AcrF family 14 1015 1.1E-172 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82693 147 192 4.36E-16 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82693 278 332 4.36E-16 T 06-07-2017 CDO28_RS32305 d40f2f7e8358553db727dfa942333810 1049 SUPERFAMILY SSF82866 304 499 1.06E-40 T 06-07-2017 CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 SUPERFAMILY SSF53383 30 390 3.06E-94 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 389 1.2E-103 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 Gene3D G3DSA:3.40.640.10 13 258 6.9E-79 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 15 391 2.1E-178 T 06-07-2017 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 PIRSF PIRSF001434 1 393 3.1E-121 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS02980 d332a934c421c25e5270217c8ed742f7 395 Gene3D G3DSA:3.90.1150.10 260 392 4.6E-34 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS00295 37849d2ea9e1385ba39206caadf0c102 188 Gene3D G3DSA:3.40.1580.10 32 169 1.3E-4 T 06-07-2017 IPR018958 SMI1/KNR4-like domain CDO28_RS00295 37849d2ea9e1385ba39206caadf0c102 188 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 34 166 3.1E-16 T 06-07-2017 IPR018958 SMI1/KNR4-like domain CDO28_RS00295 37849d2ea9e1385ba39206caadf0c102 188 SUPERFAMILY SSF160631 26 77 2.35E-11 T 06-07-2017 CDO28_RS00295 37849d2ea9e1385ba39206caadf0c102 188 SUPERFAMILY SSF160631 115 181 2.35E-11 T 06-07-2017 CDO28_RS00295 37849d2ea9e1385ba39206caadf0c102 188 SMART SM00860 32 167 7.3E-8 T 06-07-2017 IPR018958 SMI1/KNR4-like domain CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 Pfam PF01029 NusB family 38 165 7.0E-20 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 Gene3D G3DSA:1.10.940.10 36 184 7.2E-32 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 Pfam PF01189 16S rRNA methyltransferase RsmB/F 275 465 1.1E-40 T 06-07-2017 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 SUPERFAMILY SSF48013 38 184 9.65E-28 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 SUPERFAMILY SSF53335 177 467 2.97E-55 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 Gene3D G3DSA:3.40.50.150 259 467 3.6E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 278 288 8.7E-23 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 450 467 8.7E-23 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 339 351 8.7E-23 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 249 263 8.7E-23 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS10725 04a5dbf522715cf146a52ae8b5a233e2 470 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 389 405 8.7E-23 T 06-07-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 287 1.1E-33 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 Gene3D G3DSA:3.40.50.720 3 166 1.5E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 SUPERFAMILY SSF51735 5 165 2.06E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 9 22 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 PIRSF PIRSF000103 1 295 6.8E-73 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 1.9E-42 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 SUPERFAMILY SSF48179 167 291 1.04E-32 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS00825 09ec719fe2a103c9cbd59546f2c9d47c 295 Gene3D G3DSA:1.10.1040.10 167 294 9.4E-41 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 316 328 - T 06-07-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SUPERFAMILY SSF81923 4 143 1.09E-55 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Gene3D G3DSA:1.10.1780.10 4 144 3.2E-39 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SMART SM00382 501 669 5.0E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SMART SM00382 220 366 1.2E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Pfam PF07724 AAA domain (Cdc48 subfamily) 501 660 3.6E-44 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Gene3D G3DSA:1.10.8.60 680 754 4.5E-28 T 06-07-2017 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 5 748 0.0 T 06-07-2017 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SUPERFAMILY SSF52540 182 429 2.18E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 532 550 - T 06-07-2017 IPR028299 ClpA/B, conserved site 2 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SUPERFAMILY SSF52540 451 742 1.27E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Gene3D G3DSA:1.10.8.60 366 449 1.1E-27 T 06-07-2017 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Gene3D G3DSA:3.40.50.300 183 364 4.7E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 64 1.2E-11 T 06-07-2017 IPR004176 Clp, N-terminal GO:0019538 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 225 356 8.8E-12 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 505 523 6.9E-37 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 547 565 6.9E-37 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 576 594 6.9E-37 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 623 6.9E-37 T 06-07-2017 IPR001270 ClpA/B family GO:0005524 CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Gene3D G3DSA:3.40.50.300 456 679 1.2E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 671 747 2.0E-24 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS02940 95120e179b635914f0588a98e3fe60dc 838 SMART SM01086 667 759 3.9E-33 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS15135 e5b5600560741ef6fc69476076356408 113 SUPERFAMILY SSF103481 10 109 1.7E-23 T 06-07-2017 CDO28_RS15135 e5b5600560741ef6fc69476076356408 113 Pfam PF00893 Small Multidrug Resistance protein 7 97 1.2E-27 T 06-07-2017 IPR000390 Small multidrug resistance protein family GO:0016021 CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 Gene3D G3DSA:3.40.50.720 170 289 7.0E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 Pfam PF00107 Zinc-binding dehydrogenase 177 304 3.8E-19 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 SUPERFAMILY SSF50129 3 175 2.28E-47 T 06-07-2017 IPR011032 GroES-like CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 SMART SM00829 11 336 3.9E-5 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 135 1.1E-22 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 Gene3D G3DSA:3.90.180.10 3 169 2.1E-41 T 06-07-2017 IPR011032 GroES-like CDO28_RS14545 e9ad171ecd0a74f844f99ce99dddfe2b 346 SUPERFAMILY SSF51735 140 309 1.97E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 SUPERFAMILY SSF52540 296 513 2.31E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 Pfam PF00005 ABC transporter 297 451 1.1E-13 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 Pfam PF00005 ABC transporter 41 197 4.4E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 SUPERFAMILY SSF52540 24 254 3.52E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 Gene3D G3DSA:3.40.50.300 296 513 1.0E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 Gene3D G3DSA:3.40.50.300 24 254 2.3E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 SMART SM00382 50 259 4.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32130 e9df1953bcecbc25dfc60875ca495d6b 528 ProSitePatterns PS00211 ABC transporters family signature. 424 438 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS03240 4db6d592f0afadc558370a2ac1d566b4 236 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 58 220 9.1E-7 T 06-07-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CDO28_RS03240 4db6d592f0afadc558370a2ac1d566b4 236 SUPERFAMILY SSF51621 13 228 1.19E-15 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS03240 4db6d592f0afadc558370a2ac1d566b4 236 Gene3D G3DSA:3.20.20.60 34 229 1.4E-17 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01021 OMPA domain signature 115 137 1.6E-13 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01021 OMPA domain signature 160 176 1.6E-13 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01021 OMPA domain signature 145 160 1.6E-13 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 Pfam PF00691 OmpA family 114 209 1.7E-23 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 ProSitePatterns PS01068 OmpA-like domain. 147 191 - T 06-07-2017 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 Gene3D G3DSA:3.30.1330.60 94 215 7.9E-41 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 SUPERFAMILY SSF103088 102 218 4.84E-39 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 198 218 4.5E-11 T 06-07-2017 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 160 177 4.5E-11 T 06-07-2017 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 178 197 4.5E-11 T 06-07-2017 CDO28_RS09185 cb0e40c6f7f9c74913d8c31505959886 221 Pfam PF13488 Glycine zipper 39 84 8.6E-12 T 06-07-2017 CDO28_RS04415 f52a3e5fcb87d97b3012d537e8d86784 153 Gene3D G3DSA:3.40.50.960 5 147 3.1E-49 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04415 f52a3e5fcb87d97b3012d537e8d86784 153 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 7 146 1.1E-42 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04415 f52a3e5fcb87d97b3012d537e8d86784 153 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 8 144 7.0E-31 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04415 f52a3e5fcb87d97b3012d537e8d86784 153 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 2 149 24.336 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS04415 f52a3e5fcb87d97b3012d537e8d86784 153 SUPERFAMILY SSF52121 4 149 1.83E-47 T 06-07-2017 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS27665 3d272a8a56b98b1c28d2e31e11fecbc8 383 Pfam PF06580 Histidine kinase 191 270 3.0E-19 T 06-07-2017 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 CDO28_RS27665 3d272a8a56b98b1c28d2e31e11fecbc8 383 Gene3D G3DSA:3.30.565.10 241 330 4.3E-4 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27665 3d272a8a56b98b1c28d2e31e11fecbc8 383 SUPERFAMILY SSF55874 246 354 4.43E-8 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08115 d73032bf13e9ff1795ca4dc1a97a1020 206 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 21 191 1.6E-8 T 06-07-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 CDO28_RS08115 d73032bf13e9ff1795ca4dc1a97a1020 206 SUPERFAMILY SSF52540 17 203 1.84E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08115 d73032bf13e9ff1795ca4dc1a97a1020 206 Gene3D G3DSA:3.40.50.300 10 204 8.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 SUPERFAMILY SSF46785 5 90 6.72E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 SUPERFAMILY SSF53850 92 297 3.26E-46 T 06-07-2017 CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 Gene3D G3DSA:1.10.10.10 5 85 3.5E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 Gene3D G3DSA:3.40.190.10 86 151 1.1E-6 T 06-07-2017 CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 Gene3D G3DSA:3.40.190.10 164 264 5.8E-22 T 06-07-2017 CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 Pfam PF03466 LysR substrate binding domain 90 295 6.1E-41 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS14150 7d92255a233d893a338c378d28ab916f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 7.3E-17 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30465 ecdc3d720981f9e57c4155646d722837 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 262 1.2E-60 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS30465 ecdc3d720981f9e57c4155646d722837 263 Gene3D G3DSA:3.90.226.10 5 204 1.9E-64 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS30465 ecdc3d720981f9e57c4155646d722837 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 7 263 1.3E-139 T 06-07-2017 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 CDO28_RS30465 ecdc3d720981f9e57c4155646d722837 263 SUPERFAMILY SSF52096 2 263 2.84E-83 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS30465 ecdc3d720981f9e57c4155646d722837 263 Gene3D G3DSA:1.10.12.10 205 263 2.6E-20 T 06-07-2017 IPR014748 Crontonase, C-terminal CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 SUPERFAMILY SSF81343 2 124 3.92E-34 T 06-07-2017 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 122 7.7E-29 T 06-07-2017 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 125 2.0E-42 T 06-07-2017 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 83 96 - T 06-07-2017 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 Gene3D G3DSA:1.20.1300.10 3 124 8.5E-42 T 06-07-2017 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 PIRSF PIRSF000178 1 127 1.2E-41 T 06-07-2017 CDO28_RS11705 be0a2383138f0ab01b2a89fc025c2701 130 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 8 32 - T 06-07-2017 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 115 132 5.6E-10 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 57 68 5.6E-10 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 142 155 5.6E-10 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 Gene3D G3DSA:2.60.410.10 275 364 1.6E-17 T 06-07-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 21 249 1.2E-53 T 06-07-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 Gene3D G3DSA:3.40.710.10 22 273 2.4E-68 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 275 364 2.5E-20 T 06-07-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 SUPERFAMILY SSF69189 275 365 1.06E-18 T 06-07-2017 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 SMART SM00936 275 365 1.2E-27 T 06-07-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDO28_RS02130 94c3baa524908a96e8a0b3947acb0f64 384 SUPERFAMILY SSF56601 2 273 2.6E-61 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 SUPERFAMILY SSF53223 19 171 6.47E-53 T 06-07-2017 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 PIRSF PIRSF036684 8 761 0.0 T 06-07-2017 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Gene3D G3DSA:3.40.50.720 171 458 3.2E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 SMART SM00919 173 410 1.5E-139 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Gene3D G3DSA:3.40.50.10750 583 732 3.3E-48 T 06-07-2017 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 SUPERFAMILY SSF51735 173 452 1.58E-85 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Pfam PF00390 Malic enzyme, N-terminal domain 29 124 5.3E-21 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 SMART SM01274 28 161 2.7E-79 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Gene3D G3DSA:3.40.50.10380 17 170 2.1E-48 T 06-07-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Pfam PF01515 Phosphate acetyl/butaryl transferase 439 756 2.0E-104 T 06-07-2017 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 SUPERFAMILY SSF53659 439 759 5.76E-82 T 06-07-2017 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 Pfam PF03949 Malic enzyme, NAD binding domain 175 369 1.8E-21 T 06-07-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 CDO28_RS08570 447a0b58fbd93b7adce098729713ecfe 761 ProSitePatterns PS00331 Malic enzymes signature. 169 185 - T 06-07-2017 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 60 227 3.4E-32 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 Pfam PF07506 RepB plasmid partitioning protein 157 275 7.9E-13 T 06-07-2017 IPR011111 RepB plasmid partition CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 SUPERFAMILY SSF110849 61 157 7.32E-16 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 2 325 4.5E-102 T 06-07-2017 IPR017819 Plasmid partitioning protein, RepB CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 Gene3D G3DSA:3.90.1530.10 58 160 1.8E-13 T 06-07-2017 CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 SUPERFAMILY SSF109709 148 220 2.35E-7 T 06-07-2017 CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 Pfam PF02195 ParB-like nuclease domain 63 154 3.4E-15 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS20665 b432e47d793073b4c2162b0aca23e76e 333 SMART SM00470 62 155 9.2E-19 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS17070 2decc6a774cd6c9fa4e697736bb79935 233 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 173 6.7E-25 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS02330 9e57d2357592c98c8d7506085076cd55 343 Pfam PF13439 Glycosyltransferase Family 4 12 148 1.5E-7 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS02330 9e57d2357592c98c8d7506085076cd55 343 SUPERFAMILY SSF53756 3 337 4.93E-63 T 06-07-2017 CDO28_RS02330 9e57d2357592c98c8d7506085076cd55 343 Pfam PF00534 Glycosyl transferases group 1 160 315 1.0E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS02330 9e57d2357592c98c8d7506085076cd55 343 Gene3D G3DSA:3.40.50.2000 159 315 5.2E-23 T 06-07-2017 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 SUPERFAMILY SSF53850 98 298 1.38E-29 T 06-07-2017 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 4.9E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 Gene3D G3DSA:1.10.10.10 12 94 1.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.6E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 Gene3D G3DSA:3.40.190.10 99 178 5.0E-18 T 06-07-2017 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 Gene3D G3DSA:3.40.190.10 179 263 7.0E-18 T 06-07-2017 CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 Pfam PF03466 LysR substrate binding domain 99 294 1.1E-24 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS26115 d208ca6a6177ca9d1c06adc774252537 300 SUPERFAMILY SSF46785 7 116 4.84E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 Gene3D G3DSA:2.40.170.20 365 753 1.4E-106 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 Gene3D G3DSA:2.40.170.20 162 328 1.4E-106 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 Pfam PF00593 TonB dependent receptor 507 750 2.7E-25 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 Gene3D G3DSA:2.170.130.10 33 161 4.9E-19 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 SUPERFAMILY SSF56935 31 753 7.22E-90 T 06-07-2017 CDO28_RS15310 ed60f3adcd507c7fb1c903a5baab5db3 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 161 2.5E-13 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS28475 1048eddae5449d4048fd2322aa996b88 410 Gene3D G3DSA:1.10.760.10 327 407 5.6E-4 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS28475 1048eddae5449d4048fd2322aa996b88 410 SUPERFAMILY SSF46626 291 403 4.17E-6 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS28475 1048eddae5449d4048fd2322aa996b88 410 Pfam PF06181 Protein of unknown function (DUF989) 6 298 5.3E-131 T 06-07-2017 IPR010389 Domain of unknown function DUF989 CDO28_RS10385 530cbfb98d820a1b0faf676751b5bdeb 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 6 89 1.1E-29 T 06-07-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CDO28_RS10385 530cbfb98d820a1b0faf676751b5bdeb 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 3 89 20.266 T 06-07-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CDO28_RS10385 530cbfb98d820a1b0faf676751b5bdeb 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 92 1.2E-16 T 06-07-2017 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 CDO28_RS10385 530cbfb98d820a1b0faf676751b5bdeb 107 SUPERFAMILY SSF101386 5 94 2.62E-24 T 06-07-2017 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 PRINTS PR00481 Cytosol aminopeptidase signature 258 275 1.8E-49 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 PRINTS PR00481 Cytosol aminopeptidase signature 317 338 1.8E-49 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 PRINTS PR00481 Cytosol aminopeptidase signature 339 359 1.8E-49 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 1.8E-49 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 PRINTS PR00481 Cytosol aminopeptidase signature 368 383 1.8E-49 T 06-07-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 Gene3D G3DSA:3.40.220.10 3 149 3.7E-28 T 06-07-2017 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 SUPERFAMILY SSF52949 3 181 2.94E-22 T 06-07-2017 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 27 143 4.3E-20 T 06-07-2017 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 6 496 34.778 T 06-07-2017 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 SUPERFAMILY SSF53187 177 492 5.65E-119 T 06-07-2017 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 183 487 3.0E-120 T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 Gene3D G3DSA:3.40.630.10 168 494 5.4E-135 T 06-07-2017 CDO28_RS04725 c0b66e567eeaf7a7b7c81c8c730954f5 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 343 350 - T 06-07-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDO28_RS34665 034b15e06de6ef5e7fc212b7749a7f9e 201 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 109 3.3E-25 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS34665 034b15e06de6ef5e7fc212b7749a7f9e 201 Gene3D G3DSA:3.40.50.9200 56 108 1.1E-4 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS34665 034b15e06de6ef5e7fc212b7749a7f9e 201 SUPERFAMILY SSF52206 56 106 3.4E-5 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 Gene3D G3DSA:3.20.20.10 17 219 8.4E-59 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 TIGRFAM TIGR00492 alr: alanine racemase 13 376 2.2E-67 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 38 48 - T 06-07-2017 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 Pfam PF00842 Alanine racemase, C-terminal domain 239 375 1.2E-31 T 06-07-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 SUPERFAMILY SSF51419 15 231 5.05E-60 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 SMART SM01005 239 376 2.2E-49 T 06-07-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 Hamap MF_01201 Alanine racemase. 8 376 29.558 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 Gene3D G3DSA:2.40.37.10 220 377 2.5E-46 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 Pfam PF01168 Alanine racemase, N-terminal domain 15 226 1.2E-55 T 06-07-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 255 270 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 69 87 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 272 287 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 163 174 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 201 228 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 129 141 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 PRINTS PR00992 Alanine racemase signature 33 49 3.5E-30 T 06-07-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS04870 b49ec9cc531ac6ea0c9e5380fa4c620f 379 SUPERFAMILY SSF50621 234 377 5.23E-37 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 169 365 5.3E-21 T 06-07-2017 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 Gene3D G3DSA:3.10.450.50 10 113 3.0E-9 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 332 357 1.1E-7 T 06-07-2017 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 300 1.1E-7 T 06-07-2017 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 189 1.1E-7 T 06-07-2017 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 SUPERFAMILY SSF54427 13 115 4.73E-11 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 Gene3D G3DSA:3.50.50.60 168 372 3.6E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 Pfam PF12680 SnoaL-like domain 19 114 2.2E-6 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 SUPERFAMILY SSF51905 168 363 4.13E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31115 a05931bbeab5e0168c156fead32adb82 600 SUPERFAMILY SSF51905 444 565 4.13E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11395 4fdb589423beb4959922ff515b1760ff 451 Gene3D G3DSA:1.10.3430.10 39 429 4.4E-141 T 06-07-2017 IPR029020 Ammonium/urea transporter CDO28_RS11395 4fdb589423beb4959922ff515b1760ff 451 TIGRFAM TIGR00836 amt: ammonium transporter 45 448 2.2E-128 T 06-07-2017 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 CDO28_RS11395 4fdb589423beb4959922ff515b1760ff 451 SUPERFAMILY SSF111352 42 429 8.24E-127 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CDO28_RS11395 4fdb589423beb4959922ff515b1760ff 451 ProSitePatterns PS01219 Ammonium transporters signature. 204 229 - T 06-07-2017 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 CDO28_RS11395 4fdb589423beb4959922ff515b1760ff 451 Pfam PF00909 Ammonium Transporter Family 48 448 5.3E-114 T 06-07-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CDO28_RS30285 451d2d7119c27c670a48b21eee98ef87 231 Pfam PF00005 ABC transporter 17 160 2.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30285 451d2d7119c27c670a48b21eee98ef87 231 Gene3D G3DSA:3.40.50.300 1 222 2.2E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30285 451d2d7119c27c670a48b21eee98ef87 231 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 231 3.0E-102 T 06-07-2017 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE CDO28_RS30285 451d2d7119c27c670a48b21eee98ef87 231 SMART SM00382 26 217 3.4E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30285 451d2d7119c27c670a48b21eee98ef87 231 SUPERFAMILY SSF52540 2 220 8.43E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34610 0873840b9fcda239ca51560f69037a52 206 Gene3D G3DSA:1.10.357.10 11 200 2.4E-34 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS34610 0873840b9fcda239ca51560f69037a52 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 64 6.3E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS34610 0873840b9fcda239ca51560f69037a52 206 Pfam PF16925 Bacterial transcriptional repressor C-terminal 112 195 4.6E-7 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS34610 0873840b9fcda239ca51560f69037a52 206 SUPERFAMILY SSF46689 10 85 3.54E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS34610 0873840b9fcda239ca51560f69037a52 206 SUPERFAMILY SSF48498 90 199 3.77E-22 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 SUPERFAMILY SSF54373 418 504 3.92E-9 T 06-07-2017 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 SUPERFAMILY SSF51905 520 581 4.16E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 SUPERFAMILY SSF51905 4 341 4.16E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 Gene3D G3DSA:3.50.50.60 243 349 4.6E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 Gene3D G3DSA:3.50.50.60 4 158 4.6E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 Gene3D G3DSA:3.50.50.60 471 579 4.6E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 Pfam PF05199 GMC oxidoreductase 444 572 1.4E-19 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS22270 45ebc9b12485aa3b268697b68a47474e 590 Pfam PF00732 GMC oxidoreductase 232 348 8.8E-7 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS02425 078483492b899decb8199f6fa5e466c7 379 SUPERFAMILY SSF81301 1 124 5.07E-7 T 06-07-2017 CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 Pfam PF00005 ABC transporter 25 162 3.1E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 Gene3D G3DSA:3.40.50.300 5 226 1.2E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 8 214 6.4E-75 T 06-07-2017 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 SMART SM00382 28 211 6.1E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 SUPERFAMILY SSF52540 6 235 1.78E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11065 a8de8e069b6a404c2b7a803dfe94f8f7 238 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 Gene3D G3DSA:3.40.50.720 1 222 2.9E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 64 75 2.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 118 126 2.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 2.2E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 Pfam PF00106 short chain dehydrogenase 1 183 4.8E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 SUPERFAMILY SSF51735 1 222 4.48E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 64 75 2.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 112 128 2.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 2.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28245 2ac17e533c7afc0c42936606e9ca5a6d 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 2.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07465 cbd606ec9b3049c8e3e17743c38fdde6 97 Pfam PF13466 STAS domain 13 87 2.1E-13 T 06-07-2017 IPR002645 STAS domain CDO28_RS07465 cbd606ec9b3049c8e3e17743c38fdde6 97 SUPERFAMILY SSF52091 11 87 2.16E-5 T 06-07-2017 IPR002645 STAS domain CDO28_RS07465 cbd606ec9b3049c8e3e17743c38fdde6 97 Gene3D G3DSA:3.30.750.24 11 88 1.8E-4 T 06-07-2017 IPR002645 STAS domain CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 451 551 2.3E-49 T 06-07-2017 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 Reactome: R-HSA-611105 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Pfam PF13450 NAD(P)-binding Rossmann-like domain 19 60 1.9E-7 T 06-07-2017 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Gene3D G3DSA:3.50.50.60 311 452 3.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Gene3D G3DSA:3.50.50.60 120 225 3.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Gene3D G3DSA:3.50.50.60 15 53 3.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 Gene3D G3DSA:3.30.70.20 498 540 3.1E-4 T 06-07-2017 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 SUPERFAMILY SSF51905 310 453 1.66E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 SUPERFAMILY SSF51905 9 213 1.66E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 SUPERFAMILY SSF54373 215 310 2.75E-36 T 06-07-2017 CDO28_RS05350 4748312015285a95f8f33d5cb04341fe 554 SUPERFAMILY SSF54862 455 554 5.47E-29 T 06-07-2017 CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 SUPERFAMILY SSF50249 1 66 6.34E-22 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 PIRSF PIRSF002599 1 67 1.9E-18 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 Gene3D G3DSA:2.40.50.140 1 66 4.2E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 PRINTS PR00050 Cold shock protein signature 25 34 3.1E-6 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 PRINTS PR00050 Cold shock protein signature 4 19 3.1E-6 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 SMART SM00357 3 67 9.4E-24 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS21215 66b712c15c99bca6912e4e46d8c1b775 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.1E-24 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS13705 194e8fd54631c2c96f1fb94fb11b9b16 79 SUPERFAMILY SSF64307 7 76 8.11E-23 T 06-07-2017 IPR001455 TusA-like domain CDO28_RS13705 194e8fd54631c2c96f1fb94fb11b9b16 79 Gene3D G3DSA:3.30.110.40 6 76 3.0E-24 T 06-07-2017 IPR001455 TusA-like domain CDO28_RS13705 194e8fd54631c2c96f1fb94fb11b9b16 79 Pfam PF01206 Sulfurtransferase TusA 8 76 1.2E-22 T 06-07-2017 IPR001455 TusA-like domain CDO28_RS16620 64e0005bc94f4db00deb9c45d93e1941 171 SUPERFAMILY SSF101738 4 118 7.45E-48 T 06-07-2017 IPR007481 Stringent starvation protein B CDO28_RS16620 64e0005bc94f4db00deb9c45d93e1941 171 Pfam PF04386 Stringent starvation protein B 11 162 2.5E-51 T 06-07-2017 IPR007481 Stringent starvation protein B CDO28_RS16620 64e0005bc94f4db00deb9c45d93e1941 171 Gene3D G3DSA:2.30.30.220 2 118 2.2E-57 T 06-07-2017 IPR007481 Stringent starvation protein B CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 165 245 2.2E-17 T 06-07-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 SUPERFAMILY SSF54534 108 248 1.0E-36 T 06-07-2017 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 TIGRFAM TIGR00115 tig: trigger factor 11 425 1.5E-130 T 06-07-2017 IPR005215 Trigger factor GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Pfam PF05697 Bacterial trigger factor protein (TF) 1 151 9.8E-35 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 SUPERFAMILY SSF102735 1 138 2.49E-32 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Gene3D G3DSA:3.10.50.40 160 221 5.6E-11 T 06-07-2017 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Hamap MF_00303 Trigger factor [tig]. 1 431 20.948 T 06-07-2017 IPR005215 Trigger factor GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 SUPERFAMILY SSF109998 256 440 3.83E-46 T 06-07-2017 IPR027304 Trigger factor/SurA domain CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Gene3D G3DSA:1.10.3120.10 222 400 1.9E-55 T 06-07-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 268 425 9.6E-45 T 06-07-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 Gene3D G3DSA:3.30.70.1050 1 126 9.2E-30 T 06-07-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CDO28_RS02630 d5a7cd1754d416354018dd4684124413 491 PIRSF PIRSF003095 1 447 1.5E-142 T 06-07-2017 IPR005215 Trigger factor GO:0015031 CDO28_RS06005 866629df1c4874d52b9ff76aa8b13255 336 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 12 296 5.1E-98 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 CDO28_RS06005 866629df1c4874d52b9ff76aa8b13255 336 Pfam PF02401 LytB protein 14 293 5.4E-83 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 CDO28_RS06005 866629df1c4874d52b9ff76aa8b13255 336 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 11 298 35.601 T 06-07-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 CDO28_RS25255 0974382947f0674ac05403990787616f 181 Gene3D G3DSA:3.40.50.850 1 180 1.4E-58 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS25255 0974382947f0674ac05403990787616f 181 Pfam PF00857 Isochorismatase family 5 156 4.4E-39 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS25255 0974382947f0674ac05403990787616f 181 SUPERFAMILY SSF52499 2 180 1.7E-52 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS04015 a683bd3e444a4e1a91ef3116f9e808fd 436 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 26 436 1.2E-150 T 06-07-2017 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 CDO28_RS04015 a683bd3e444a4e1a91ef3116f9e808fd 436 Pfam PF12704 MacB-like periplasmic core domain 51 263 1.6E-15 T 06-07-2017 IPR025857 MacB-like periplasmic core domain CDO28_RS04015 a683bd3e444a4e1a91ef3116f9e808fd 436 Pfam PF02687 FtsX-like permease family 297 429 5.3E-14 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 CDO28_RS32820 06070a9185cd8d35fb83e2155c7dbf26 348 Gene3D G3DSA:3.40.50.720 28 196 3.2E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32820 06070a9185cd8d35fb83e2155c7dbf26 348 SUPERFAMILY SSF51735 28 336 1.26E-90 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32820 06070a9185cd8d35fb83e2155c7dbf26 348 Gene3D G3DSA:3.90.25.10 197 340 8.7E-58 T 06-07-2017 CDO28_RS32820 06070a9185cd8d35fb83e2155c7dbf26 348 Pfam PF16363 GDP-mannose 4,6 dehydratase 32 328 5.7E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25780 157fefcf75dd69ade8b48a7feba21ecd 233 Pfam PF13489 Methyltransferase domain 30 186 3.2E-15 T 06-07-2017 CDO28_RS25780 157fefcf75dd69ade8b48a7feba21ecd 233 SUPERFAMILY SSF53335 24 210 9.53E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS25780 157fefcf75dd69ade8b48a7feba21ecd 233 Gene3D G3DSA:3.40.50.150 22 187 4.3E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01870 84b95f547ec070ed2925b467cebeebc6 215 SUPERFAMILY SSF82679 48 148 1.44E-20 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS01870 84b95f547ec070ed2925b467cebeebc6 215 Gene3D G3DSA:2.30.30.30 157 204 4.9E-5 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 CDO28_RS01870 84b95f547ec070ed2925b467cebeebc6 215 SMART SM00738 47 145 7.0E-10 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS01870 84b95f547ec070ed2925b467cebeebc6 215 Gene3D G3DSA:3.30.70.940 48 145 2.6E-13 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS01870 84b95f547ec070ed2925b467cebeebc6 215 Pfam PF02357 Transcription termination factor nusG 49 140 2.5E-15 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 PIRSF PIRSF000858 2 530 4.4E-186 T 06-07-2017 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 Pfam PF01144 Coenzyme A transferase 9 251 4.2E-30 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 SMART SM00882 7 252 1.3E-54 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 SUPERFAMILY SSF100950 3 270 1.29E-76 T 06-07-2017 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 Gene3D G3DSA:3.40.1080.10 6 251 4.6E-57 T 06-07-2017 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 Gene3D G3DSA:3.40.810.20 286 510 5.7E-51 T 06-07-2017 CDO28_RS10835 80bada0b73feb62bcc6674d7575b4d0e 540 SUPERFAMILY SSF100950 282 525 1.71E-64 T 06-07-2017 CDO28_RS22070 999d6a1a47109d272ae67d9c8890459f 197 SUPERFAMILY SSF52540 4 197 2.75E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22070 999d6a1a47109d272ae67d9c8890459f 197 SMART SM00382 28 196 1.5E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS22070 999d6a1a47109d272ae67d9c8890459f 197 Gene3D G3DSA:3.40.50.300 4 195 1.0E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22070 999d6a1a47109d272ae67d9c8890459f 197 Pfam PF00005 ABC transporter 19 161 5.1E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22070 999d6a1a47109d272ae67d9c8890459f 197 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 SUPERFAMILY SSF54631 11 141 8.34E-26 T 06-07-2017 CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 SMART SM00116 13 61 0.092 T 06-07-2017 IPR000644 CBS domain CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 SMART SM00116 79 126 1.5E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 Gene3D G3DSA:3.10.580.10 11 126 5.3E-23 T 06-07-2017 CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 Pfam PF00571 CBS domain 11 60 5.2E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS24725 67c37f32f8a6f4171903e9d327627085 146 Pfam PF00571 CBS domain 72 125 3.2E-7 T 06-07-2017 IPR000644 CBS domain CDO28_RS22460 376d629654d0db3d323d0fc027b3e591 408 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 274 281 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22460 376d629654d0db3d323d0fc027b3e591 408 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 110 310 2.6E-13 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS22460 376d629654d0db3d323d0fc027b3e591 408 Gene3D G3DSA:3.30.470.20 101 392 9.0E-36 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS22460 376d629654d0db3d323d0fc027b3e591 408 SUPERFAMILY SSF56059 110 314 6.19E-41 T 06-07-2017 CDO28_RS21965 b04ef2bb3b45d2700cb98cceaf21c9fa 297 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 86 286 3.3E-97 T 06-07-2017 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 CDO28_RS21965 b04ef2bb3b45d2700cb98cceaf21c9fa 297 Gene3D G3DSA:1.10.3720.10 95 289 1.0E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21965 b04ef2bb3b45d2700cb98cceaf21c9fa 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 291 5.0E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21965 b04ef2bb3b45d2700cb98cceaf21c9fa 297 SUPERFAMILY SSF161098 97 282 1.44E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 51 2.3E-6 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 SMART SM00354 4 74 8.2E-15 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 Gene3D G3DSA:3.40.50.2300 177 313 2.4E-46 T 06-07-2017 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 Gene3D G3DSA:1.10.260.40 3 54 2.8E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 Gene3D G3DSA:3.40.50.2300 55 176 1.5E-35 T 06-07-2017 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 Pfam PF13377 Periplasmic binding protein-like domain 172 333 3.4E-34 T 06-07-2017 CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 SUPERFAMILY SSF53822 64 335 3.34E-75 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS12775 9c33d4ca1c25a5d7e93b541e034cdfaf 340 SUPERFAMILY SSF47413 4 62 1.97E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 128 1.7E-35 T 06-07-2017 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Gene3D G3DSA:3.50.50.60 382 435 1.2E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 SUPERFAMILY SSF51971 140 380 4.47E-51 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 SUPERFAMILY SSF46548 8 151 1.31E-32 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Gene3D G3DSA:3.50.50.60 239 380 1.0E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 142 431 5.3E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 162 1.9E-17 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 1.9E-17 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 395 417 1.9E-17 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 371 387 1.9E-17 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Gene3D G3DSA:3.40.50.720 222 238 3.4E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Gene3D G3DSA:3.40.50.720 137 173 3.4E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 Gene3D G3DSA:1.10.1060.10 12 136 2.9E-35 T 06-07-2017 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 164 1.1E-6 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 423 1.1E-6 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS14975 da522621fd8c943e881ad0ab4013e402 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 296 1.1E-6 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 SUPERFAMILY SSF53067 274 522 1.67E-53 T 06-07-2017 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 277 475 4.6E-43 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 260 7.5E-31 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 SUPERFAMILY SSF53067 4 261 2.82E-54 T 06-07-2017 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 Gene3D G3DSA:3.30.420.40 274 522 2.9E-53 T 06-07-2017 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 Gene3D G3DSA:3.30.420.40 1 260 6.8E-61 T 06-07-2017 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 522 8.4E-150 T 06-07-2017 IPR006003 Carbohydrate kinase, FGGY-related GO:0005975|GO:0016773 CDO28_RS15020 201c17e446e2a9c3b0040a55a9512878 527 PIRSF PIRSF000538 2 527 2.8E-73 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 Gene3D G3DSA:2.60.120.10 14 118 1.2E-43 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 SUPERFAMILY SSF51182 13 251 6.24E-76 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 Gene3D G3DSA:2.60.120.10 119 263 1.2E-67 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 PIRSF PIRSF036628 1 266 4.9E-117 T 06-07-2017 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 16 262 2.2E-99 T 06-07-2017 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 CDO28_RS08805 9b6f4f8327a5434a1638c54c88a5f3d9 266 Pfam PF04962 KduI/IolB family 5 262 5.8E-113 T 06-07-2017 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS04215 dd280710b8766393b2d48e271082dfad 285 SUPERFAMILY SSF56219 30 267 3.27E-34 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS04215 dd280710b8766393b2d48e271082dfad 285 Gene3D G3DSA:3.60.10.10 33 191 4.0E-9 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS04215 dd280710b8766393b2d48e271082dfad 285 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 38 255 1.8E-14 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS33445 1988b326db3413af23f5f7838105d956 317 SUPERFAMILY SSF53448 18 278 7.36E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33445 1988b326db3413af23f5f7838105d956 317 Gene3D G3DSA:3.90.550.10 19 276 1.0E-27 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33445 1988b326db3413af23f5f7838105d956 317 Pfam PF00535 Glycosyl transferase family 2 20 148 2.1E-17 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.9E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.9E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.9E-16 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 SUPERFAMILY SSF46785 4 64 5.93E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 7.8E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 06-07-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 Gene3D G3DSA:3.30.70.920 57 151 2.4E-26 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 SMART SM00344 4 113 1.4E-42 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 Gene3D G3DSA:1.10.10.10 1 55 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 7.4E-19 T 06-07-2017 CDO28_RS01710 4737fa58a6453fa31a49ec16dd746ac0 153 SUPERFAMILY SSF54909 64 151 2.01E-20 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 Gene3D G3DSA:3.40.50.300 11 247 7.1E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 SMART SM00382 294 463 0.6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 SMART SM00382 43 232 2.0E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 Pfam PF02653 Branched-chain amino acid transport system / permease component 555 814 1.1E-17 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 SUPERFAMILY SSF52540 17 246 1.39E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 SUPERFAMILY SSF52540 284 482 1.86E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 Pfam PF00005 ABC transporter 34 185 2.0E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 Pfam PF00005 ABC transporter 285 424 6.7E-15 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 Gene3D G3DSA:3.40.50.300 285 492 2.3E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23620 6840c44846506993cfca1571ee08d23f 825 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SUPERFAMILY SSF47384 67 139 2.35E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SMART SM00388 83 141 5.8E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 182 286 6.1E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 Pfam PF00672 HAMP domain 11 78 1.7E-13 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 Gene3D G3DSA:1.10.287.130 73 126 1.8E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 Gene3D G3DSA:3.30.565.10 127 287 1.6E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SUPERFAMILY SSF158472 31 80 4.71E-5 T 06-07-2017 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SMART SM00304 30 82 1.8E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 PRINTS PR00344 Bacterial sensor protein C-terminal signature 249 267 1.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 PRINTS PR00344 Bacterial sensor protein C-terminal signature 214 228 1.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 PRINTS PR00344 Bacterial sensor protein C-terminal signature 232 242 1.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 285 1.7E-16 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SUPERFAMILY SSF55874 136 286 2.75E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 Pfam PF00512 His Kinase A (phospho-acceptor) domain 84 124 4.6E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS23810 0393cf0dc4e9deb7b3c0a8e0ac1ff63f 291 SMART SM00387 180 288 2.1E-31 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS32155 f213b392e39ff92e41ec43025d85e8f4 421 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 414 1.4E-99 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS32155 f213b392e39ff92e41ec43025d85e8f4 421 PIRSF PIRSF006066 1 421 5.1E-122 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS32155 f213b392e39ff92e41ec43025d85e8f4 421 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 14 419 1.9E-109 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Gene3D G3DSA:1.20.1640.10 635 830 3.8E-29 T 06-07-2017 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Gene3D G3DSA:1.20.1640.10 322 524 3.3E-25 T 06-07-2017 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 46 513 9.5E-132 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 PRINTS PR01755 Bacterial translocase SecF protein signature 567 582 3.1E-27 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 PRINTS PR01755 Bacterial translocase SecF protein signature 731 749 3.1E-27 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 PRINTS PR01755 Bacterial translocase SecF protein signature 763 778 3.1E-27 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 PRINTS PR01755 Bacterial translocase SecF protein signature 683 697 3.1E-27 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 528 41.305 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 SUPERFAMILY SSF82866 323 516 1.57E-40 T 06-07-2017 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Pfam PF07549 SecD/SecF GG Motif 562 582 7.2E-6 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Pfam PF07549 SecD/SecF GG Motif 39 61 2.2E-5 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 276 506 1.5E-72 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 628 812 3.5E-48 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 568 814 1.6E-69 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Pfam PF02355 Protein export membrane protein 638 824 2.1E-59 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Pfam PF02355 Protein export membrane protein 347 512 5.4E-14 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 540 830 25.245 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDO28_RS07730 a4b078bc82739d041afcc33dd7075a6a 844 SUPERFAMILY SSF82866 602 827 8.5E-43 T 06-07-2017 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 Gene3D G3DSA:3.20.20.110 153 464 1.9E-161 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 11 477 55.717 T 06-07-2017 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 157 464 3.8E-135 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 199 207 - T 06-07-2017 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 Gene3D G3DSA:3.30.70.150 25 151 4.7E-60 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 SUPERFAMILY SSF51649 153 479 6.67E-146 T 06-07-2017 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 SUPERFAMILY SSF54966 12 151 2.49E-57 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31565 82f3422b9b53f336c758210479317c8b 486 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 27 147 7.7E-43 T 06-07-2017 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS11255 835fbbd35b6bdaf947fafc50dd05b55c 125 PIRSF PIRSF031804 1 125 2.0E-49 T 06-07-2017 IPR016983 Uncharacterised conserved protein UCP031804 CDO28_RS11255 835fbbd35b6bdaf947fafc50dd05b55c 125 Pfam PF06803 Protein of unknown function (DUF1232) 62 97 2.2E-12 T 06-07-2017 IPR010652 Protein of unknown function DUF1232 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 5 320 54.719 T 06-07-2017 IPR026578 L-carnitine dehydrogenase KEGG: 00040+1.1.1.10|MetaCyc: PWY-3602|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7472 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 251 4.7E-11 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Gene3D G3DSA:3.40.50.720 2 187 1.1E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 SUPERFAMILY SSF48179 186 258 1.36E-9 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Pfam PF13279 Thioesterase-like superfamily 352 471 4.5E-16 T 06-07-2017 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Gene3D G3DSA:3.10.129.10 343 477 2.6E-46 T 06-07-2017 IPR029069 HotDog domain CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 SUPERFAMILY SSF51735 1 182 1.71E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Gene3D G3DSA:1.10.1040.10 188 242 3.2E-7 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 SUPERFAMILY SSF54637 348 495 1.47E-38 T 06-07-2017 IPR029069 HotDog domain CDO28_RS16005 d5d694bb7cbc91699e9a9c709a1455a1 496 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 182 6.0E-41 T 06-07-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 3 160 24.488 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 SUPERFAMILY SSF55486 42 162 1.29E-42 T 06-07-2017 CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 Gene3D G3DSA:3.40.390.30 22 159 2.8E-45 T 06-07-2017 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 Pfam PF02130 Uncharacterized protein family UPF0054 21 156 9.9E-37 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 126 136 - T 06-07-2017 IPR020549 Endoribonuclease YbeY, conserved site CDO28_RS08505 29e5fd10622164d7f98a5039970e60ca 168 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 50 157 3.3E-36 T 06-07-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDO28_RS05990 882517bc50f22522c1ac86b4a8a080af 161 SUPERFAMILY SSF52833 2 161 7.8E-32 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05990 882517bc50f22522c1ac86b4a8a080af 161 Gene3D G3DSA:3.40.30.10 2 161 4.0E-58 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05990 882517bc50f22522c1ac86b4a8a080af 161 Pfam PF08534 Redoxin 5 158 9.2E-37 T 06-07-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 Gene3D G3DSA:1.25.40.10 326 357 1.7E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 Gene3D G3DSA:1.25.40.10 144 291 1.7E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 118 5.5E-33 T 06-07-2017 IPR017560 Cytochrome c-type biogenesis protein CcmI CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 Pfam PF13432 Tetratricopeptide repeat 200 259 6.3E-5 T 06-07-2017 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 Pfam PF13432 Tetratricopeptide repeat 160 182 0.013 T 06-07-2017 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 SUPERFAMILY SSF48452 144 262 3.8E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS05435 4872412d78df9b2b9491180b06590812 381 SUPERFAMILY SSF48452 308 350 3.8E-17 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 Gene3D G3DSA:3.40.50.720 153 263 1.2E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 SMART SM00829 11 322 5.0E-12 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 2.3E-6 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 Gene3D G3DSA:3.90.180.10 1 152 2.2E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 Pfam PF00107 Zinc-binding dehydrogenase 154 269 9.1E-21 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 SUPERFAMILY SSF51735 116 288 4.33E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 SUPERFAMILY SSF50129 294 322 6.85E-34 T 06-07-2017 IPR011032 GroES-like CDO28_RS32525 260124db47a99ebf533b942e3ebc0987 326 SUPERFAMILY SSF50129 1 120 6.85E-34 T 06-07-2017 IPR011032 GroES-like CDO28_RS13435 b225a974374d73cd592ccc4c2b4c7e64 345 Pfam PF13432 Tetratricopeptide repeat 225 295 2.8E-10 T 06-07-2017 CDO28_RS13435 b225a974374d73cd592ccc4c2b4c7e64 345 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 221 336 1.5E-39 T 06-07-2017 IPR014162 Tol-Pal system, YbgF CDO28_RS13435 b225a974374d73cd592ccc4c2b4c7e64 345 SUPERFAMILY SSF48452 220 331 1.19E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13435 b225a974374d73cd592ccc4c2b4c7e64 345 Pfam PF13174 Tetratricopeptide repeat 298 327 0.001 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13435 b225a974374d73cd592ccc4c2b4c7e64 345 Gene3D G3DSA:1.25.40.10 220 334 1.2E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17650 0537909345700447da60325bfb8c5c9b 327 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 7 310 1.3E-62 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CDO28_RS17650 0537909345700447da60325bfb8c5c9b 327 Pfam PF03186 CobD/Cbib protein 9 305 3.2E-92 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CDO28_RS17650 0537909345700447da60325bfb8c5c9b 327 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 327 96.639 T 06-07-2017 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CDO28_RS20805 2924ef024cdc0d5cad2d3f299bd6dd80 249 SMART SM01057 31 249 3.0E-82 T 06-07-2017 IPR001148 Alpha carbonic anhydrase CDO28_RS20805 2924ef024cdc0d5cad2d3f299bd6dd80 249 Pfam PF00194 Eukaryotic-type carbonic anhydrase 30 243 1.2E-42 T 06-07-2017 IPR001148 Alpha carbonic anhydrase CDO28_RS20805 2924ef024cdc0d5cad2d3f299bd6dd80 249 Gene3D G3DSA:3.10.200.10 30 246 1.9E-61 T 06-07-2017 IPR001148 Alpha carbonic anhydrase CDO28_RS20805 2924ef024cdc0d5cad2d3f299bd6dd80 249 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 118 134 - T 06-07-2017 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0006730|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 CDO28_RS20805 2924ef024cdc0d5cad2d3f299bd6dd80 249 SUPERFAMILY SSF51069 29 246 3.93E-65 T 06-07-2017 IPR001148 Alpha carbonic anhydrase CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 SUPERFAMILY SSF52440 4 97 3.74E-32 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 305 35.547 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Pfam PF01820 D-ala D-ala ligase N-terminus 6 85 1.6E-21 T 06-07-2017 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 PIRSF PIRSF039102 46 307 1.5E-74 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Gene3D G3DSA:3.30.470.20 175 304 8.5E-49 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Gene3D G3DSA:3.30.470.20 87 104 8.5E-49 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 64 75 - T 06-07-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 304 1.8E-87 T 06-07-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 SUPERFAMILY SSF56059 97 304 5.3E-49 T 06-07-2017 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Pfam PF07478 D-ala D-ala ligase C-terminus 106 301 2.0E-44 T 06-07-2017 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 243 275 - T 06-07-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Gene3D G3DSA:3.30.1490.20 107 174 6.3E-12 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS16420 e62a6033de6e6cec2a6344cc58da9567 308 Gene3D G3DSA:3.40.50.20 4 85 2.3E-29 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS03970 89d7766bdf0779cd402f3dfa4a476026 394 Gene3D G3DSA:1.20.1250.20 18 197 4.1E-20 T 06-07-2017 CDO28_RS03970 89d7766bdf0779cd402f3dfa4a476026 394 Gene3D G3DSA:1.20.1250.20 215 385 8.1E-19 T 06-07-2017 CDO28_RS03970 89d7766bdf0779cd402f3dfa4a476026 394 Pfam PF07690 Major Facilitator Superfamily 30 243 1.0E-14 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS03970 89d7766bdf0779cd402f3dfa4a476026 394 SUPERFAMILY SSF103473 16 391 1.7E-47 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 SMART SM00344 1 107 1.7E-17 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 Pfam PF13404 AsnC-type helix-turn-helix domain 1 41 2.6E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 Gene3D G3DSA:3.30.70.920 65 138 1.4E-14 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.0E-8 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.0E-8 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.0E-8 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 SUPERFAMILY SSF46785 1 53 1.37E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 SUPERFAMILY SSF54909 62 141 1.33E-15 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 Gene3D G3DSA:1.10.10.10 1 52 1.3E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12055 c0a59e98f8520449469625686797bbe1 144 Pfam PF01037 Lrp/AsnC ligand binding domain 67 137 1.3E-14 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS07945 e981f79416f5601ed6751dc9cc961de0 136 SUPERFAMILY SSF158682 4 127 1.27E-14 T 06-07-2017 IPR029024 TerB-like CDO28_RS07945 e981f79416f5601ed6751dc9cc961de0 136 Pfam PF05099 Tellurite resistance protein TerB 7 126 1.5E-7 T 06-07-2017 IPR007791 Co-chaperone DjlA, N-terminal CDO28_RS07945 e981f79416f5601ed6751dc9cc961de0 136 Gene3D G3DSA:1.10.3680.10 4 121 4.2E-9 T 06-07-2017 IPR029024 TerB-like CDO28_RS26140 90100c212ac8a4a9283ccd9b39d4d4d8 467 Gene3D G3DSA:3.30.1330.120 276 402 1.8E-15 T 06-07-2017 CDO28_RS26140 90100c212ac8a4a9283ccd9b39d4d4d8 467 Pfam PF03972 MmgE/PrpD family 15 444 3.5E-96 T 06-07-2017 IPR005656 MmgE/PrpD GO:0016829 CDO28_RS26140 90100c212ac8a4a9283ccd9b39d4d4d8 467 SUPERFAMILY SSF103378 12 452 2.48E-94 T 06-07-2017 IPR005656 MmgE/PrpD GO:0016829 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 SUPERFAMILY SSF103025 436 742 3.14E-69 T 06-07-2017 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.30.9.10 224 344 1.5E-41 T 06-07-2017 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.30.9.10 86 140 1.5E-41 T 06-07-2017 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Pfam PF01266 FAD dependent oxidoreductase 9 382 7.7E-35 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.30.1360.120 439 515 1.3E-29 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.30.1360.120 606 701 1.3E-29 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Pfam PF01571 Aminomethyltransferase folate-binding domain 444 722 1.3E-55 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.50.50.60 5 80 1.5E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.50.50.60 141 223 1.5E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.50.50.60 346 422 1.5E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 SUPERFAMILY SSF101790 779 852 6.54E-11 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:2.40.30.110 775 835 4.6E-13 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 758 836 1.9E-7 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Gene3D G3DSA:3.30.70.1400 516 601 3.0E-14 T 06-07-2017 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 Pfam PF16350 FAD dependent oxidoreductase central domain 385 441 2.1E-12 T 06-07-2017 IPR032503 FAD dependent oxidoreductase, central domain CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 SUPERFAMILY SSF54373 224 344 1.33E-16 T 06-07-2017 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 SUPERFAMILY SSF51905 346 413 1.56E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14570 ae8e9f88e25113ba17d2fbc70a131bfc 853 SUPERFAMILY SSF51905 8 224 1.56E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Gene3D G3DSA:3.40.50.980 163 325 9.0E-32 T 06-07-2017 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Gene3D G3DSA:3.40.50.980 22 162 9.2E-30 T 06-07-2017 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Gene3D G3DSA:2.30.38.10 326 403 1.2E-13 T 06-07-2017 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Pfam PF00501 AMP-binding enzyme 28 413 4.6E-64 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 SUPERFAMILY SSF56801 22 510 1.16E-102 T 06-07-2017 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 635 851 1.0E-32 T 06-07-2017 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 SUPERFAMILY SSF110710 616 858 2.33E-32 T 06-07-2017 CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS22470 b061f085f8be86f2d9de1741f1b349ad 878 Gene3D G3DSA:3.30.300.30 408 507 6.4E-18 T 06-07-2017 CDO28_RS22870 903ed55701f1a16f014a9ddef6e6db86 200 SUPERFAMILY SSF160519 1 193 7.19E-70 T 06-07-2017 IPR009569 Amino acid synthesis, putative CDO28_RS22870 903ed55701f1a16f014a9ddef6e6db86 200 Gene3D G3DSA:3.30.1330.110 1 194 3.5E-80 T 06-07-2017 IPR009569 Amino acid synthesis, putative CDO28_RS22870 903ed55701f1a16f014a9ddef6e6db86 200 Pfam PF06684 Amino acid synthesis 5 181 8.0E-67 T 06-07-2017 IPR009569 Amino acid synthesis, putative CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 SUPERFAMILY SSF56003 333 740 1.16E-101 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Gene3D G3DSA:3.30.365.10 538 739 5.6E-36 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Gene3D G3DSA:3.90.1170.50 203 302 4.7E-17 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 PIRSF PIRSF036389 13 745 3.5E-239 T 06-07-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 SUPERFAMILY SSF56003 50 250 5.23E-34 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Gene3D G3DSA:3.30.365.10 50 202 2.2E-28 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 SMART SM01008 224 303 1.8E-18 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Gene3D G3DSA:3.30.365.10 336 455 2.0E-26 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 332 569 2.1E-30 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 62 215 1.5E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 607 693 5.6E-13 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23640 f415875a1cb1bc80c26e8829c7956ef9 748 SUPERFAMILY SSF54665 225 303 1.67E-10 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS02680 e8951f86180152e0366be63868b3ce63 291 Pfam PF05673 Protein of unknown function (DUF815) 35 282 6.7E-104 T 06-07-2017 IPR008533 Domain of unknown function DUF815 CDO28_RS02680 e8951f86180152e0366be63868b3ce63 291 SUPERFAMILY SSF52540 48 196 4.73E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02680 e8951f86180152e0366be63868b3ce63 291 Gene3D G3DSA:3.40.50.300 75 191 1.9E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16715 35b8ab0b83cd6207292615370798525d 116 SUPERFAMILY SSF54427 19 115 6.41E-8 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS16715 35b8ab0b83cd6207292615370798525d 116 Gene3D G3DSA:3.10.450.50 23 115 4.7E-6 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 SUPERFAMILY SSF55874 332 447 3.93E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 Gene3D G3DSA:1.10.287.130 239 290 6.7E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 Gene3D G3DSA:3.30.565.10 291 446 1.6E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 SMART SM00387 348 450 4.0E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 SMART SM00304 193 246 5.2E-4 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 445 8.6E-10 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 SMART SM00388 247 304 0.001 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS27110 eaf6b00e12a59c6434e7392cc78865ee 450 SUPERFAMILY SSF47384 230 302 5.62E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 SUPERFAMILY SSF111369 203 343 2.35E-12 T 06-07-2017 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 Gene3D G3DSA:2.40.50.100 96 128 1.9E-20 T 06-07-2017 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 Gene3D G3DSA:2.40.50.100 259 293 1.9E-20 T 06-07-2017 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 SUPERFAMILY SSF111369 95 168 6.02E-10 T 06-07-2017 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 Pfam PF00529 HlyD membrane-fusion protein of T1SS 148 386 8.7E-8 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS12610 b0bd601015417afb1ff7ecd9961a04b3 403 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 92 338 7.1E-18 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS00420 37ff9fa3401092c804b4185ccdacc153 352 Pfam PF04303 PrpF protein 6 351 1.8E-105 T 06-07-2017 IPR007400 PrpF protein CDO28_RS00420 37ff9fa3401092c804b4185ccdacc153 352 SUPERFAMILY SSF54506 5 169 2.98E-61 T 06-07-2017 CDO28_RS00420 37ff9fa3401092c804b4185ccdacc153 352 SUPERFAMILY SSF54506 173 351 2.04E-51 T 06-07-2017 CDO28_RS00420 37ff9fa3401092c804b4185ccdacc153 352 Gene3D G3DSA:3.10.310.10 178 333 4.4E-46 T 06-07-2017 CDO28_RS00420 37ff9fa3401092c804b4185ccdacc153 352 Gene3D G3DSA:3.10.310.10 5 177 1.2E-72 T 06-07-2017 CDO28_RS23560 9da74ffbf8fa9518714465fddb6940f0 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 322 7.0E-62 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS23560 9da74ffbf8fa9518714465fddb6940f0 327 PIRSF PIRSF017082 1 324 1.6E-66 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS23560 9da74ffbf8fa9518714465fddb6940f0 327 SUPERFAMILY SSF53850 118 284 1.33E-11 T 06-07-2017 CDO28_RS28385 bd4f58c50aaa475c1ca472be7acbf9da 377 Gene3D G3DSA:1.20.1250.20 4 174 4.4E-9 T 06-07-2017 CDO28_RS28385 bd4f58c50aaa475c1ca472be7acbf9da 377 Gene3D G3DSA:1.20.1250.20 191 366 1.5E-15 T 06-07-2017 CDO28_RS28385 bd4f58c50aaa475c1ca472be7acbf9da 377 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 1 364 8.1E-130 T 06-07-2017 IPR010645 Uncharacterised MFS-type transporter YbfB CDO28_RS28385 bd4f58c50aaa475c1ca472be7acbf9da 377 SUPERFAMILY SSF103473 3 370 7.72E-31 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS19235 3c7ad1c867456c5f179109af1b577bed 263 Gene3D G3DSA:3.40.225.10 25 237 4.6E-54 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS19235 3c7ad1c867456c5f179109af1b577bed 263 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 31 211 5.5E-39 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS19235 3c7ad1c867456c5f179109af1b577bed 263 SMART SM01007 30 211 8.0E-44 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS19235 3c7ad1c867456c5f179109af1b577bed 263 SUPERFAMILY SSF53639 23 237 3.92E-58 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 Gene3D G3DSA:3.40.190.80 161 263 1.1E-20 T 06-07-2017 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 Gene3D G3DSA:3.30.540.10 9 160 9.3E-46 T 06-07-2017 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 SUPERFAMILY SSF56655 10 262 3.4E-68 T 06-07-2017 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 183 204 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 4.1E-33 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS32395 a691fe53b1b7642931125c6a3df2d7c0 266 Pfam PF00459 Inositol monophosphatase family 13 252 1.2E-51 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 Gene3D G3DSA:2.60.120.10 19 149 7.7E-17 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 Pfam PF13545 Crp-like helix-turn-helix domain 166 235 2.1E-9 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 SUPERFAMILY SSF46785 159 238 6.82E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 Gene3D G3DSA:1.10.10.10 158 238 2.4E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 SUPERFAMILY SSF51206 16 155 7.59E-27 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS14760 276aa37321d34fd81e9d34ad711706b2 250 Pfam PF00027 Cyclic nucleotide-binding domain 45 129 1.0E-13 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 7 213 1.3E-86 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 Gene3D G3DSA:3.20.20.70 3 223 4.9E-93 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 SUPERFAMILY SSF51366 4 217 1.41E-74 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 201 3.3E-82 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS31550 7b29da1fb16163b074a3e324f737d1c4 228 PIRSF PIRSF001461 1 227 1.5E-91 T 06-07-2017 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 285 339 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 Gene3D G3DSA:1.20.210.10 44 529 3.4E-231 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 SUPERFAMILY SSF81442 29 561 3.66E-216 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 33 560 1.8E-220 T 06-07-2017 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 203 221 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 388 406 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 125 149 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 283 304 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 353 374 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 329 344 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 32 57 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 184 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 232 251 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 416 435 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 PRINTS PR01165 Cytochrome c oxidase subunit I signature 466 487 3.0E-148 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06045 eab3da7775568c66a165cf0d7af07269 562 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 41 508 1.6E-154 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 SUPERFAMILY SSF47616 88 215 8.81E-28 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 Pfam PF14497 Glutathione S-transferase, C-terminal domain 132 199 7.3E-6 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 11 82 5.9E-15 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 Gene3D G3DSA:1.20.1050.10 97 214 6.6E-42 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 11 216 1.4E-85 T 06-07-2017 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-71182 CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 SUPERFAMILY SSF52833 10 92 9.74E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS12415 67ef10f912d776b1f3a1eb57329539da 217 Gene3D G3DSA:3.40.30.10 11 96 6.1E-26 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 243 260 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 178 202 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 203 227 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 13 30 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 63 90 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 138 158 6.4E-36 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 185 322 1.6E-39 T 06-07-2017 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 10 164 3.5E-36 T 06-07-2017 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 Gene3D G3DSA:3.40.50.720 6 188 1.9E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 SUPERFAMILY SSF51735 9 185 1.06E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 193 214 - T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 SUPERFAMILY SSF48179 185 333 1.26E-43 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 PIRSF PIRSF000114 4 333 8.5E-89 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 9 324 32.28 T 06-07-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 CDO28_RS11680 c44d7b9f9c89d07b876fea2fcf99cda5 333 Gene3D G3DSA:1.10.1040.10 189 328 7.4E-44 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS20375 3800c218fe4f9e547cfa13d6fb48d7d2 448 SUPERFAMILY SSF55073 280 443 1.31E-46 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS20375 3800c218fe4f9e547cfa13d6fb48d7d2 448 SMART SM00267 264 441 6.8E-63 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS20375 3800c218fe4f9e547cfa13d6fb48d7d2 448 Gene3D G3DSA:3.30.70.270 277 445 8.5E-53 T 06-07-2017 CDO28_RS20375 3800c218fe4f9e547cfa13d6fb48d7d2 448 Pfam PF00990 Diguanylate cyclase, GGDEF domain 275 437 2.7E-46 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS20375 3800c218fe4f9e547cfa13d6fb48d7d2 448 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 271 440 2.7E-50 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS19520 6d46bc182d99fb48d2af5c5bfc70e66b 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 62 324 4.5E-26 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS19520 6d46bc182d99fb48d2af5c5bfc70e66b 327 Gene3D G3DSA:3.40.190.10 129 235 2.0E-10 T 06-07-2017 CDO28_RS19520 6d46bc182d99fb48d2af5c5bfc70e66b 327 PIRSF PIRSF017082 1 327 3.0E-86 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS19520 6d46bc182d99fb48d2af5c5bfc70e66b 327 SUPERFAMILY SSF53850 68 235 3.45E-15 T 06-07-2017 CDO28_RS11370 869d21e436bf2d07a505400c12b8e684 358 SUPERFAMILY SSF55347 133 280 2.05E-14 T 06-07-2017 CDO28_RS11370 869d21e436bf2d07a505400c12b8e684 358 Gene3D G3DSA:3.30.360.10 210 356 2.4E-18 T 06-07-2017 CDO28_RS11370 869d21e436bf2d07a505400c12b8e684 358 SUPERFAMILY SSF51735 6 158 8.96E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11370 869d21e436bf2d07a505400c12b8e684 358 Gene3D G3DSA:3.40.50.720 8 209 1.4E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11370 869d21e436bf2d07a505400c12b8e684 358 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 129 1.9E-24 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS07965 e4e1007c9e889d7290a7e66277d1d8af 365 Gene3D G3DSA:2.70.40.10 6 167 7.6E-62 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS07965 e4e1007c9e889d7290a7e66277d1d8af 365 Gene3D G3DSA:2.70.40.10 169 340 8.8E-67 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS07965 e4e1007c9e889d7290a7e66277d1d8af 365 SUPERFAMILY SSF51283 7 164 1.57E-31 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS07965 e4e1007c9e889d7290a7e66277d1d8af 365 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 5 363 1.5E-175 T 06-07-2017 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 CDO28_RS07965 e4e1007c9e889d7290a7e66277d1d8af 365 SUPERFAMILY SSF51283 170 339 4.19E-21 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS04135 ae937770059f3d9e9a52eef42aee16bb 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 25 120 1.8E-38 T 06-07-2017 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04135 ae937770059f3d9e9a52eef42aee16bb 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 20.2 T 06-07-2017 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SMART SM00116 230 278 7.2E-6 T 06-07-2017 IPR000644 CBS domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SMART SM00116 166 219 26.0 T 06-07-2017 IPR000644 CBS domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Gene3D G3DSA:1.25.60.10 27 151 1.8E-26 T 06-07-2017 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SUPERFAMILY SSF161093 298 470 4.58E-52 T 06-07-2017 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Pfam PF03448 MgtE intracellular N domain 56 156 8.3E-23 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SMART SM00924 56 159 1.8E-30 T 06-07-2017 IPR006668 Magnesium transporter, MgtE intracellular domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Pfam PF00571 CBS domain 163 217 5.7E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Pfam PF00571 CBS domain 225 278 3.4E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SUPERFAMILY SSF158791 31 156 1.83E-26 T 06-07-2017 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Pfam PF01769 Divalent cation transporter 342 464 6.4E-28 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 TIGRFAM TIGR00400 mgtE: magnesium transporter 49 471 3.7E-94 T 06-07-2017 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 SUPERFAMILY SSF54631 158 293 1.77E-30 T 06-07-2017 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Gene3D G3DSA:1.10.357.20 299 471 6.7E-54 T 06-07-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 CDO28_RS03385 20b944d1542d376edff3b45b12561239 473 Gene3D G3DSA:3.10.580.10 152 284 1.4E-19 T 06-07-2017 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 Pfam PF13454 FAD-NAD(P)-binding 15 167 6.4E-33 T 06-07-2017 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 SUPERFAMILY SSF51905 10 246 4.66E-21 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 SUPERFAMILY SSF51905 204 236 6.91E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 SUPERFAMILY SSF51905 307 464 6.91E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 Gene3D G3DSA:3.50.50.60 10 58 4.3E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 Gene3D G3DSA:3.50.50.60 101 212 4.3E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 Gene3D G3DSA:3.50.50.60 213 236 6.0E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28335 53c9e45dd29c68bcb9844151dbd718cc 487 Gene3D G3DSA:3.50.50.60 320 382 6.0E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 51 362 1.8E-123 T 06-07-2017 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: R-HSA-70895 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 PIRSF PIRSF006468 9 364 2.9E-127 T 06-07-2017 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: R-HSA-70895 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 Gene3D G3DSA:3.30.470.10 23 181 2.8E-66 T 06-07-2017 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 Pfam PF01063 Amino-transferase class IV 77 320 7.3E-36 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 SUPERFAMILY SSF56752 8 361 2.49E-114 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 Gene3D G3DSA:3.20.10.10 182 350 5.7E-68 T 06-07-2017 CDO28_RS09485 491fe37e303bbd951bc487eeebd37021 365 ProSitePatterns PS00770 Aminotransferases class-IV signature. 240 270 - T 06-07-2017 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS17320 c29166defdcc0a7176051613c468c713 213 Pfam PF03741 Integral membrane protein TerC family 14 193 5.3E-42 T 06-07-2017 IPR005496 Integral membrane protein TerC GO:0016021 CDO28_RS17320 c29166defdcc0a7176051613c468c713 213 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 11 194 1.0E-65 T 06-07-2017 IPR022301 Integral membrane protein YjbE CDO28_RS09890 61997dce848c5b6b2a077126767bd422 269 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 236 5.1E-64 T 06-07-2017 IPR017592 Pilus assembly, Flp-type CpaB CDO28_RS09890 61997dce848c5b6b2a077126767bd422 269 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 120 224 9.0E-27 T 06-07-2017 IPR031571 Flp pilus assembly protein RcpC/CpaB domain CDO28_RS09890 61997dce848c5b6b2a077126767bd422 269 Pfam PF08666 SAF domain 46 112 4.7E-7 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS09890 61997dce848c5b6b2a077126767bd422 269 SMART SM00858 45 113 3.5E-10 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS20330 7545126051533e11716697017d471b91 310 Gene3D G3DSA:1.10.10.10 3 86 3.0E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20330 7545126051533e11716697017d471b91 310 Gene3D G3DSA:3.40.190.10 96 174 1.4E-19 T 06-07-2017 CDO28_RS20330 7545126051533e11716697017d471b91 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 4.7E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20330 7545126051533e11716697017d471b91 310 SUPERFAMILY SSF53850 96 297 7.78E-33 T 06-07-2017 CDO28_RS20330 7545126051533e11716697017d471b91 310 Gene3D G3DSA:3.40.190.10 175 259 9.6E-16 T 06-07-2017 CDO28_RS20330 7545126051533e11716697017d471b91 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.4E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20330 7545126051533e11716697017d471b91 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.4E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20330 7545126051533e11716697017d471b91 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.4E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20330 7545126051533e11716697017d471b91 310 Pfam PF03466 LysR substrate binding domain 89 293 1.3E-29 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS20330 7545126051533e11716697017d471b91 310 SUPERFAMILY SSF46785 3 86 1.44E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Pfam PF12532 Protein of unknown function (DUF3732) 474 656 8.3E-41 T 06-07-2017 IPR022205 Protein of unknown function DUF3732 CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 SUPERFAMILY SSF52540 404 439 1.33E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 SUPERFAMILY SSF52540 298 334 1.33E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 SUPERFAMILY SSF52540 39 153 1.33E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Pfam PF13476 AAA domain 38 79 1.3E-7 T 06-07-2017 CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Gene3D G3DSA:3.40.50.300 39 69 1.7E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Gene3D G3DSA:3.40.50.300 388 467 1.7E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Gene3D G3DSA:3.40.50.300 119 150 1.7E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18315 bbbd606e8a186cb3495b72347f9dc051 664 Gene3D G3DSA:3.40.50.300 319 355 1.7E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13340 5fb85b6fc0a6528b20943e278e040728 385 SUPERFAMILY SSF111369 48 292 2.62E-67 T 06-07-2017 CDO28_RS13340 5fb85b6fc0a6528b20943e278e040728 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 286 1.2E-16 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS13340 5fb85b6fc0a6528b20943e278e040728 385 Gene3D G3DSA:2.40.50.100 166 199 5.0E-22 T 06-07-2017 CDO28_RS13340 5fb85b6fc0a6528b20943e278e040728 385 Gene3D G3DSA:2.40.50.100 58 91 5.0E-22 T 06-07-2017 CDO28_RS13340 5fb85b6fc0a6528b20943e278e040728 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 368 6.9E-92 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS08540 683ca19524600da7ab80cb6feb6c7f28 163 Pfam PF00582 Universal stress protein family 13 151 9.3E-16 T 06-07-2017 IPR006016 UspA GO:0006950 CDO28_RS08540 683ca19524600da7ab80cb6feb6c7f28 163 SUPERFAMILY SSF52402 14 151 6.95E-12 T 06-07-2017 CDO28_RS08540 683ca19524600da7ab80cb6feb6c7f28 163 Gene3D G3DSA:3.40.50.620 14 151 1.0E-17 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 28 49 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 63 75 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 84 97 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 6 21 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 27.694 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 Pfam PF00166 Chaperonin 10 Kd subunit 5 97 4.4E-37 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 SMART SM00883 5 97 9.3E-62 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 Gene3D G3DSA:2.30.33.40 5 97 4.5E-39 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS06625 027b473be785e15b02e3d997ad7df6c4 98 SUPERFAMILY SSF50129 4 97 3.3E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 28 49 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 63 75 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 84 97 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 PRINTS PR00297 10kDa chaperonin signature 6 21 3.0E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 27.694 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 Pfam PF00166 Chaperonin 10 Kd subunit 5 97 4.4E-37 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 SMART SM00883 5 97 9.3E-62 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 Gene3D G3DSA:2.30.33.40 5 97 4.5E-39 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22375 027b473be785e15b02e3d997ad7df6c4 98 SUPERFAMILY SSF50129 4 97 3.3E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 424 443 - T 06-07-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 SUPERFAMILY SSF52518 2 169 1.06E-45 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 533 5.4E-32 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Gene3D G3DSA:3.40.50.970 3 173 1.0E-54 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 SUPERFAMILY SSF52467 192 357 9.82E-42 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Gene3D G3DSA:3.40.50.1220 193 351 3.2E-41 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 5.4E-46 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 327 9.9E-29 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 SUPERFAMILY SSF52518 364 569 9.47E-52 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS31075 2b4b1e24e234240ed0122e6183a500f0 605 Gene3D G3DSA:3.40.50.970 360 570 1.8E-53 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS24295 dfa898d1e367ad30ff6d8d35c7123dfe 362 SUPERFAMILY SSF161098 8 146 2.94E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24295 dfa898d1e367ad30ff6d8d35c7123dfe 362 SUPERFAMILY SSF161098 155 349 3.66E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24295 dfa898d1e367ad30ff6d8d35c7123dfe 362 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 349 3.9E-10 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24295 dfa898d1e367ad30ff6d8d35c7123dfe 362 Gene3D G3DSA:1.10.3720.10 217 352 8.0E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24295 dfa898d1e367ad30ff6d8d35c7123dfe 362 Gene3D G3DSA:1.10.3720.10 2 133 8.0E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16965 dfc2488ff3ab8fc638133aa058f09d59 317 SUPERFAMILY SSF55073 2 172 9.89E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS16965 dfc2488ff3ab8fc638133aa058f09d59 317 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 9 159 9.1E-12 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS16965 dfc2488ff3ab8fc638133aa058f09d59 317 Gene3D G3DSA:3.30.70.1230 3 172 1.9E-29 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS31895 b0112b3800bb5e1a8bb3ec953991c16c 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 112 3.6E-29 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS31895 b0112b3800bb5e1a8bb3ec953991c16c 221 SUPERFAMILY SSF161098 16 204 4.71E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31895 b0112b3800bb5e1a8bb3ec953991c16c 221 Gene3D G3DSA:1.10.3720.10 15 217 1.3E-34 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31895 b0112b3800bb5e1a8bb3ec953991c16c 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 218 7.7E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13455 c83f8b39c1de48928cd698cc7b4afbf2 275 SUPERFAMILY SSF56925 41 257 9.94E-32 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS13455 c83f8b39c1de48928cd698cc7b4afbf2 275 Pfam PF13505 Outer membrane protein beta-barrel domain 39 257 1.3E-15 T 06-07-2017 IPR027385 Outer membrane protein beta-barrel CDO28_RS13455 c83f8b39c1de48928cd698cc7b4afbf2 275 Gene3D G3DSA:2.40.160.20 35 272 9.5E-46 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS21650 14e2e96c4a91ae81c4dc6571525907a9 300 Gene3D G3DSA:3.40.50.720 4 223 6.9E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21650 14e2e96c4a91ae81c4dc6571525907a9 300 SUPERFAMILY SSF51735 7 281 3.44E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21650 14e2e96c4a91ae81c4dc6571525907a9 300 Pfam PF05368 NmrA-like family 8 222 2.7E-29 T 06-07-2017 IPR008030 NmrA-like domain Reactome: R-HSA-70635 CDO28_RS20115 11aa5b277bf4b08b538c537dba6e96f8 103 ProDom PD002871 POLYPROTEIN GAG CORE P19 P10 CONTAINS: P27 PROTEINS FUSION TRUNCATED 14 71 0.002 T 06-07-2017 IPR004028 Retroviral Gag polyprotein, M CDO28_RS20115 11aa5b277bf4b08b538c537dba6e96f8 103 Pfam PF03050 Transposase IS66 family 2 54 6.2E-17 T 06-07-2017 IPR004291 Transposase, IS66 CDO28_RS00085 e5a28ae4ba0cdcc164b02ece484b9e45 407 Gene3D G3DSA:1.20.1250.20 211 395 3.2E-23 T 06-07-2017 CDO28_RS00085 e5a28ae4ba0cdcc164b02ece484b9e45 407 SUPERFAMILY SSF103473 17 391 9.29E-43 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS00085 e5a28ae4ba0cdcc164b02ece484b9e45 407 Pfam PF12832 MFS_1 like family 34 369 1.3E-42 T 06-07-2017 IPR024989 Major facilitator superfamily associated domain CDO28_RS00085 e5a28ae4ba0cdcc164b02ece484b9e45 407 Gene3D G3DSA:1.20.1250.20 22 197 1.1E-19 T 06-07-2017 CDO28_RS00085 e5a28ae4ba0cdcc164b02ece484b9e45 407 PIRSF PIRSF004925 11 402 5.7E-128 T 06-07-2017 IPR026032 Probable 3-phenylpropionic acid transporter CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 7 444 6.6E-65 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 Pfam PF08345 Flagellar M-ring protein C-terminal 249 413 8.4E-34 T 06-07-2017 IPR013556 Flagellar M-ring C-terminal CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 Pfam PF01514 Secretory protein of YscJ/FliF family 29 217 2.3E-57 T 06-07-2017 IPR006182 Secretory protein YscJ/FliF CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PIRSF PIRSF004862 3 557 6.0E-127 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PRINTS PR01009 Flagellar M-ring protein signature 262 280 6.4E-38 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PRINTS PR01009 Flagellar M-ring protein signature 152 166 6.4E-38 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PRINTS PR01009 Flagellar M-ring protein signature 337 361 6.4E-38 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PRINTS PR01009 Flagellar M-ring protein signature 120 138 6.4E-38 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS07405 24ea9d242ae8e8a488f1864e98031380 557 PRINTS PR01009 Flagellar M-ring protein signature 193 211 6.4E-38 T 06-07-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CDO28_RS05930 e76a7cc83e6c731e7b0a9512e4bb3e67 218 SUPERFAMILY SSF56784 7 197 9.4E-32 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05930 e76a7cc83e6c731e7b0a9512e4bb3e67 218 Pfam PF13242 HAD-hyrolase-like 145 214 1.4E-6 T 06-07-2017 CDO28_RS05930 e76a7cc83e6c731e7b0a9512e4bb3e67 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 8 187 2.4E-16 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05930 e76a7cc83e6c731e7b0a9512e4bb3e67 218 Gene3D G3DSA:3.40.50.1000 74 202 4.1E-29 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 Gene3D G3DSA:1.20.120.530 89 218 2.0E-27 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 SUPERFAMILY SSF48008 89 220 8.37E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 Pfam PF07729 FCD domain 92 212 4.9E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 SMART SM00895 91 213 4.2E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 SMART SM00345 6 64 5.8E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 24 38 5.6E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 54 5.6E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 63 4.0E-11 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 SUPERFAMILY SSF46785 23 68 7.64E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24250 dd390c38f9198894c6c39f9419c5fb95 230 Gene3D G3DSA:1.10.10.10 23 66 1.6E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04405 714705b96d588e040661a56055f68ae8 408 Pfam PF07690 Major Facilitator Superfamily 48 356 1.0E-20 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS04405 714705b96d588e040661a56055f68ae8 408 Gene3D G3DSA:1.20.1250.20 17 202 4.2E-11 T 06-07-2017 CDO28_RS04405 714705b96d588e040661a56055f68ae8 408 Gene3D G3DSA:1.20.1250.20 226 405 1.3E-10 T 06-07-2017 CDO28_RS04405 714705b96d588e040661a56055f68ae8 408 SUPERFAMILY SSF103473 19 404 7.59E-33 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 SMART SM01092 235 333 1.0E-24 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 236 326 7.6E-15 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 SUPERFAMILY SSF55447 234 335 4.45E-23 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Gene3D G3DSA:3.30.465.10 166 226 3.0E-30 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Gene3D G3DSA:3.30.465.10 57 114 3.0E-30 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Gene3D G3DSA:3.30.43.10 1 52 5.3E-17 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 SUPERFAMILY SSF56176 2 226 2.86E-56 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Gene3D G3DSA:3.30.390.50 234 335 1.3E-30 T 06-07-2017 CDO28_RS19000 33eebc87b1548d4f5b94caa22f0fbafe 338 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 226 3.0E-46 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS05270 411ecc2baf94586a70992a7c174f5369 373 SUPERFAMILY SSF53383 36 366 8.16E-65 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS05270 411ecc2baf94586a70992a7c174f5369 373 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 223 232 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS05270 411ecc2baf94586a70992a7c174f5369 373 Gene3D G3DSA:3.90.1150.10 268 367 1.0E-12 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS05270 411ecc2baf94586a70992a7c174f5369 373 Gene3D G3DSA:3.40.640.10 48 267 1.2E-46 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS05270 411ecc2baf94586a70992a7c174f5369 373 Pfam PF00155 Aminotransferase class I and II 40 363 3.4E-38 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS20925 f8921316606b77e9c2c66528de195ca1 110 Gene3D G3DSA:3.30.70.900 14 103 7.5E-19 T 06-07-2017 CDO28_RS20925 f8921316606b77e9c2c66528de195ca1 110 SUPERFAMILY SSF54909 1 103 1.42E-18 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 SUPERFAMILY SSF46894 142 205 4.08E-14 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 7.8E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 7.8E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 7.8E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 Gene3D G3DSA:1.10.10.10 138 204 2.4E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 SMART SM00421 147 204 1.2E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 SUPERFAMILY SSF52172 2 120 6.55E-11 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 Gene3D G3DSA:3.40.50.2300 2 124 1.6E-7 T 06-07-2017 CDO28_RS33635 91a3bf5a7967e0a8de140aafedd57a37 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 202 7.6E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS19395 9f67c68403e9e170e2b6909c36bb2c95 135 Pfam PF02082 Transcriptional regulator 3 80 6.8E-18 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS19395 9f67c68403e9e170e2b6909c36bb2c95 135 Gene3D G3DSA:1.10.10.10 3 133 3.5E-36 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19395 9f67c68403e9e170e2b6909c36bb2c95 135 SUPERFAMILY SSF46785 5 131 4.45E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23585 b57bbc8eb2cdf05b72b90c2fe7182e32 279 SUPERFAMILY SSF51182 47 111 4.9E-9 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS23585 b57bbc8eb2cdf05b72b90c2fe7182e32 279 SUPERFAMILY SSF51182 173 256 5.2E-10 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS23585 b57bbc8eb2cdf05b72b90c2fe7182e32 279 Gene3D G3DSA:2.60.120.10 49 109 3.3E-6 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 564 669 6.63E-30 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:3.30.2090.10 720 806 1.1E-18 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:3.30.2090.10 184 277 1.6E-29 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:3.30.70.1430 566 669 1.8E-33 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 7.1E-86 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82866 298 500 3.27E-44 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 670 719 1.88E-27 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 806 855 1.88E-27 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1032 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82714 720 806 7.59E-18 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:3.30.70.1430 41 140 1.8E-29 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 137 184 4.36E-23 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 276 332 4.36E-23 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:1.10.3850.10 811 1025 4.0E-56 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Gene3D G3DSA:1.10.3850.10 282 500 3.7E-52 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 Pfam PF00873 AcrB/AcrD/AcrF family 4 1024 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82714 184 274 1.57E-23 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82693 40 132 1.46E-23 T 06-07-2017 CDO28_RS25055 0b6a95cf8f09ed6063a921062219e1ed 1044 SUPERFAMILY SSF82866 829 1024 4.45E-43 T 06-07-2017 CDO28_RS10375 82d38d08413291d0cc5f25e74814633c 247 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 238 35.176 T 06-07-2017 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CDO28_RS10375 82d38d08413291d0cc5f25e74814633c 247 Gene3D G3DSA:3.20.20.70 1 239 9.0E-84 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10375 82d38d08413291d0cc5f25e74814633c 247 SUPERFAMILY SSF51366 1 238 5.34E-72 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS10375 82d38d08413291d0cc5f25e74814633c 247 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 4 235 4.0E-78 T 06-07-2017 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CDO28_RS10375 82d38d08413291d0cc5f25e74814633c 247 Pfam PF00977 Histidine biosynthesis protein 3 230 1.6E-77 T 06-07-2017 IPR006062 Histidine biosynthesis GO:0000105 CDO28_RS34535 96324394984dbb20a371acc39d995b28 165 SUPERFAMILY SSF47413 38 105 5.63E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS34535 96324394984dbb20a371acc39d995b28 165 Pfam PF01381 Helix-turn-helix 48 102 1.0E-10 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS34535 96324394984dbb20a371acc39d995b28 165 SMART SM00530 47 103 6.5E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS34535 96324394984dbb20a371acc39d995b28 165 Gene3D G3DSA:1.10.260.40 48 144 2.1E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 SUPERFAMILY SSF46785 8 89 1.15E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 Gene3D G3DSA:3.40.190.10 94 185 2.8E-22 T 06-07-2017 CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 6.7E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 SUPERFAMILY SSF53850 94 296 9.77E-35 T 06-07-2017 CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 Pfam PF03466 LysR substrate binding domain 98 297 8.9E-22 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 Gene3D G3DSA:1.10.10.10 4 89 5.5E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00755 e9233ebd9a75e214b7405a1f31144708 300 Gene3D G3DSA:3.40.190.10 186 270 4.9E-25 T 06-07-2017 CDO28_RS05085 b8bdd900908a3d7c27983fd4b6206736 160 SUPERFAMILY SSF55961 4 136 5.92E-26 T 06-07-2017 CDO28_RS05085 b8bdd900908a3d7c27983fd4b6206736 160 Gene3D G3DSA:3.30.530.20 5 137 3.7E-24 T 06-07-2017 IPR023393 START-like domain CDO28_RS05085 b8bdd900908a3d7c27983fd4b6206736 160 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 136 7.5E-12 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.3E-41 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 Gene3D G3DSA:3.30.70.120 1 112 7.7E-48 T 06-07-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 PRINTS PR00340 P-II protein signature 52 75 8.1E-41 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 PRINTS PR00340 P-II protein signature 83 103 8.1E-41 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 PRINTS PR00340 P-II protein signature 2 17 8.1E-41 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 PRINTS PR00340 P-II protein signature 23 41 8.1E-41 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 SUPERFAMILY SSF54913 1 112 2.07E-43 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 06-07-2017 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 SMART SM00938 4 105 5.8E-63 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS11400 f789986b60ed0eca0b8c45b4574a30ed 112 PIRSF PIRSF039144 1 112 5.7E-52 T 06-07-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDO28_RS28105 2c9847987f8fb9fc2c41d432c0836700 342 Pfam PF00535 Glycosyl transferase family 2 10 109 1.7E-25 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS28105 2c9847987f8fb9fc2c41d432c0836700 342 Gene3D G3DSA:3.90.550.10 9 229 2.5E-30 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28105 2c9847987f8fb9fc2c41d432c0836700 342 SUPERFAMILY SSF53448 8 228 2.97E-36 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27780 060c0f24ecebb446cb3567554a49f91a 199 SUPERFAMILY SSF51182 120 193 1.73E-7 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS27780 060c0f24ecebb446cb3567554a49f91a 199 Pfam PF16867 Dimethlysulfonioproprionate lyase 28 190 1.3E-63 T 06-07-2017 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 CDO28_RS27780 060c0f24ecebb446cb3567554a49f91a 199 Gene3D G3DSA:2.60.120.10 114 193 7.2E-6 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 Gene3D G3DSA:3.40.190.10 88 169 1.9E-22 T 06-07-2017 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 SUPERFAMILY SSF46785 1 86 4.34E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 Gene3D G3DSA:3.40.190.10 170 260 6.5E-21 T 06-07-2017 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 SUPERFAMILY SSF53850 89 283 1.26E-27 T 06-07-2017 CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 Pfam PF03466 LysR substrate binding domain 88 281 4.5E-29 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 Gene3D G3DSA:1.10.10.10 1 83 4.9E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30620 eef95ab5514553177296bb8d8b535727 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.1E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 SMART SM00859 5 120 5.3E-33 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 117 2.2E-28 T 06-07-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 SUPERFAMILY SSF55347 130 322 1.88E-54 T 06-07-2017 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 336 1.1E-106 T 06-07-2017 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 Gene3D G3DSA:3.40.50.720 2 142 3.0E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22335 b7f914959219234d3f0922046581677a 343 Gene3D G3DSA:3.30.360.10 143 317 2.0E-59 T 06-07-2017 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 319 3.3E-39 T 06-07-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 PIRSF PIRSF000148 3 340 1.5E-105 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 335 31.657 T 06-07-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CDO28_RS22335 b7f914959219234d3f0922046581677a 343 SUPERFAMILY SSF51735 4 158 1.81E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.4E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.4E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 SMART SM00866 96 235 2.6E-29 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 SUPERFAMILY SSF46785 4 78 1.72E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 Pfam PF07702 UTRA domain 97 234 6.0E-35 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 Gene3D G3DSA:3.40.1410.10 71 242 3.1E-37 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 SMART SM00345 15 74 5.6E-22 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 Gene3D G3DSA:1.10.10.10 3 70 1.1E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 SUPERFAMILY SSF64288 63 242 2.51E-36 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS14330 8f816d343e83de7c3fc90a2ba69638f5 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 6.7E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS11375 8b5c83a548a7fa098e3a853ec5d8f708 276 Pfam PF01261 Xylose isomerase-like TIM barrel 19 221 7.3E-29 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS11375 8b5c83a548a7fa098e3a853ec5d8f708 276 SUPERFAMILY SSF51658 1 252 3.07E-35 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS11375 8b5c83a548a7fa098e3a853ec5d8f708 276 Gene3D G3DSA:3.20.20.150 1 252 2.9E-36 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 SUPERFAMILY SSF55347 131 281 4.84E-23 T 06-07-2017 CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 Gene3D G3DSA:3.40.50.720 2 135 3.9E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 213 1.1E-4 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 1.4E-22 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 Gene3D G3DSA:3.30.360.10 136 341 1.6E-31 T 06-07-2017 CDO28_RS32350 e1920e60d0bef80f52e40d04809c9145 344 SUPERFAMILY SSF51735 4 153 1.5E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 SMART SM00382 29 212 1.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 SUPERFAMILY SSF50331 237 348 3.16E-18 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 Pfam PF08402 TOBE domain 267 342 2.2E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 Pfam PF00005 ABC transporter 21 162 1.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 Gene3D G3DSA:3.40.50.300 3 235 3.2E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 Gene3D G3DSA:2.40.50.140 270 333 4.6E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS32650 2f8b65ea5415b3b2496e8d34a6ef5e12 349 SUPERFAMILY SSF52540 4 244 3.25E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27170 574c3aaf18c227a0e6f7e92d95fe4670 418 Pfam PF00534 Glycosyl transferases group 1 230 392 1.3E-26 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS27170 574c3aaf18c227a0e6f7e92d95fe4670 418 Gene3D G3DSA:3.40.50.2000 202 392 8.6E-28 T 06-07-2017 CDO28_RS27170 574c3aaf18c227a0e6f7e92d95fe4670 418 SUPERFAMILY SSF53756 1 409 2.38E-68 T 06-07-2017 CDO28_RS27170 574c3aaf18c227a0e6f7e92d95fe4670 418 Pfam PF13439 Glycosyltransferase Family 4 16 217 1.4E-17 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS15595 61ca3daa0dc20eb066f0ed04b719c127 400 SUPERFAMILY SSF53383 1 396 2.69E-113 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS15595 61ca3daa0dc20eb066f0ed04b719c127 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS15595 61ca3daa0dc20eb066f0ed04b719c127 400 Gene3D G3DSA:3.40.640.10 45 275 1.4E-73 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS15595 61ca3daa0dc20eb066f0ed04b719c127 400 Pfam PF00155 Aminotransferase class I and II 32 392 9.4E-85 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS15595 61ca3daa0dc20eb066f0ed04b719c127 400 Gene3D G3DSA:3.90.1150.10 276 398 3.7E-45 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 280 293 - T 06-07-2017 IPR023632 ATPase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 SUPERFAMILY SSF52943 3 294 4.05E-89 T 06-07-2017 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 294 1.1E-100 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Gene3D G3DSA:3.40.1380.10 70 195 1.2E-34 T 06-07-2017 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Gene3D G3DSA:1.10.287.80 209 243 1.4E-31 T 06-07-2017 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Gene3D G3DSA:1.10.287.80 19 60 1.4E-31 T 06-07-2017 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 PRINTS PR00126 ATP synthase gamma subunit signature 171 188 2.3E-30 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 PRINTS PR00126 ATP synthase gamma subunit signature 76 95 2.3E-30 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 PRINTS PR00126 ATP synthase gamma subunit signature 241 260 2.3E-30 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 PRINTS PR00126 ATP synthase gamma subunit signature 272 293 2.3E-30 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 PIRSF PIRSF039089 1 294 1.7E-107 T 06-07-2017 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Gene3D G3DSA:1.10.287.80 244 289 2.9E-28 T 06-07-2017 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 294 33.767 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11890 818e05b5295b0f2f42333b688592f7e2 294 Pfam PF00231 ATP synthase 3 294 5.5E-92 T 06-07-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS03450 936bcc3d8b2f289234fde0f686a52710 277 Pfam PF00756 Putative esterase 21 270 1.6E-52 T 06-07-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 CDO28_RS03450 936bcc3d8b2f289234fde0f686a52710 277 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 276 8.3E-132 T 06-07-2017 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 CDO28_RS03450 936bcc3d8b2f289234fde0f686a52710 277 Gene3D G3DSA:3.40.50.1820 1 276 1.2E-71 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS03450 936bcc3d8b2f289234fde0f686a52710 277 SUPERFAMILY SSF53474 1 277 3.03E-82 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 Gene3D G3DSA:3.30.420.40 92 236 2.2E-17 T 06-07-2017 CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 Pfam PF00480 ROK family 97 241 4.3E-8 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 Gene3D G3DSA:1.10.10.10 23 90 3.5E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 SUPERFAMILY SSF46785 23 90 1.56E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 SUPERFAMILY SSF53067 95 350 1.04E-18 T 06-07-2017 CDO28_RS19305 d78e5eb50fe430fd0ee21267a96a56d6 357 Pfam PF13412 Winged helix-turn-helix DNA-binding 25 70 2.6E-8 T 06-07-2017 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 210 228 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Gene3D G3DSA:2.150.10.10 188 303 4.8E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Gene3D G3DSA:2.150.10.10 14 154 1.4E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 228 246 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 SUPERFAMILY SSF51120 186 351 1.83E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 SUPERFAMILY SSF51120 32 165 6.63E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 219 237 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 PRINTS PR00313 NodO calcium binding signature 97 108 3.2E-10 T 06-07-2017 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 PRINTS PR00313 NodO calcium binding signature 250 259 3.2E-10 T 06-07-2017 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 PRINTS PR00313 NodO calcium binding signature 223 231 3.2E-10 T 06-07-2017 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 PRINTS PR00313 NodO calcium binding signature 232 240 3.2E-10 T 06-07-2017 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 237 255 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 117 125 30.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 241 256 0.17 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 96 107 0.39 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 205 221 0.8 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 223 239 0.024 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33785 28ce85883dfe66128c79c2fdc9ad7d70 353 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 130 143 24.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.30.1590.10 97 172 1.1E-34 T 06-07-2017 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.30.1590.10 231 269 1.1E-34 T 06-07-2017 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:1.10.10.470 574 678 4.5E-28 T 06-07-2017 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 SMART SM00642 5 472 6.6E-6 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 873 2.3E-278 T 06-07-2017 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Pfam PF00128 Alpha amylase, catalytic domain 25 98 1.3E-13 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 SUPERFAMILY SSF51445 483 733 4.13E-116 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 SUPERFAMILY SSF51445 227 434 4.13E-116 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 SUPERFAMILY SSF51445 6 159 4.13E-116 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.20.20.80 285 358 2.3E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.20.20.80 533 573 2.3E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.20.20.80 688 802 2.3E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:3.20.20.80 4 96 2.3E-63 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:1.10.150.200 473 499 3.2E-9 T 06-07-2017 CDO28_RS30155 085c4965dfeb03a8024a97553df4bc6b 875 Gene3D G3DSA:1.10.150.200 374 436 3.2E-9 T 06-07-2017 CDO28_RS23390 74dc28f4e52a97c813e624f17412f2d2 545 Pfam PF00884 Sulfatase 47 388 3.5E-60 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS23390 74dc28f4e52a97c813e624f17412f2d2 545 Gene3D G3DSA:3.30.1120.10 442 520 2.1E-7 T 06-07-2017 CDO28_RS23390 74dc28f4e52a97c813e624f17412f2d2 545 SUPERFAMILY SSF53649 44 532 5.89E-118 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS23390 74dc28f4e52a97c813e624f17412f2d2 545 Gene3D G3DSA:3.40.720.10 45 441 6.8E-98 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 Gene3D G3DSA:2.40.50.140 2 70 4.5E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 SMART SM00357 4 70 4.7E-25 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 SUPERFAMILY SSF50249 2 70 1.48E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 PRINTS PR00050 Cold shock protein signature 5 20 2.7E-11 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 PRINTS PR00050 Cold shock protein signature 26 35 2.7E-11 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 PRINTS PR00050 Cold shock protein signature 41 59 2.7E-11 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 PIRSF PIRSF002599 1 71 3.6E-21 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS15570 75c04df2fd955ebe73b74b2d5289b40b 71 Pfam PF00313 'Cold-shock' DNA-binding domain 4 68 1.6E-23 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 Gene3D G3DSA:3.40.50.720 153 244 1.3E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 SMART SM00829 10 324 5.0E-14 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 Pfam PF13602 Zinc-binding dehydrogenase 187 324 1.1E-22 T 06-07-2017 CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 SUPERFAMILY SSF51735 117 291 2.02E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 Gene3D G3DSA:3.90.180.10 1 152 3.9E-39 T 06-07-2017 IPR011032 GroES-like CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 4.5E-9 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS26715 9aea7f8fbbd74070e6836da2d52a420b 326 SUPERFAMILY SSF50129 1 137 2.13E-39 T 06-07-2017 IPR011032 GroES-like CDO28_RS00350 784d50223d7ef5e4a3935416f94dde17 437 SUPERFAMILY SSF103473 17 413 5.23E-53 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS00350 784d50223d7ef5e4a3935416f94dde17 437 Pfam PF07690 Major Facilitator Superfamily 39 381 1.4E-37 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS00350 784d50223d7ef5e4a3935416f94dde17 437 Gene3D G3DSA:1.20.1250.20 36 220 2.4E-29 T 06-07-2017 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 Pfam PF01965 DJ-1/PfpI family 33 181 2.3E-10 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 SUPERFAMILY SSF46689 221 271 2.42E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 Gene3D G3DSA:1.10.10.60 275 321 1.1E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 SUPERFAMILY SSF46689 273 321 1.65E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 Gene3D G3DSA:3.40.50.880 14 226 2.0E-34 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 SUPERFAMILY SSF52317 14 200 6.66E-37 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 Gene3D G3DSA:1.10.10.60 227 274 3.0E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 Pfam PF12833 Helix-turn-helix domain 243 320 5.7E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS00915 b87f82d4696e89b695988c3bf2f9e5e8 335 SMART SM00342 237 320 1.2E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS04620 27a309334393338ac0f95d0f1a7dae2e 202 Gene3D G3DSA:1.20.1050.10 93 199 5.2E-9 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS04620 27a309334393338ac0f95d0f1a7dae2e 202 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 82 5.2E-17 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS04620 27a309334393338ac0f95d0f1a7dae2e 202 SUPERFAMILY SSF47616 76 192 6.25E-13 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS04620 27a309334393338ac0f95d0f1a7dae2e 202 Gene3D G3DSA:3.40.30.10 2 92 2.5E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS04620 27a309334393338ac0f95d0f1a7dae2e 202 SUPERFAMILY SSF52833 7 92 1.17E-17 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 SUPERFAMILY SSF46785 22 92 2.49E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 Gene3D G3DSA:1.10.10.10 9 89 2.3E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 Gene3D G3DSA:1.20.120.530 118 250 3.3E-24 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 SMART SM00895 117 239 6.4E-18 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 88 4.8E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 SUPERFAMILY SSF48008 118 243 7.59E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 SMART SM00345 29 88 2.4E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 2.7E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 2.7E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS33050 64ffcfc64a33b985bc148c518d3aeac9 255 Pfam PF07729 FCD domain 118 237 7.2E-24 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS25380 1ca8de7ba8449e04a18d88e4bc52b5f7 350 SUPERFAMILY SSF53850 29 348 5.02E-67 T 06-07-2017 CDO28_RS25380 1ca8de7ba8449e04a18d88e4bc52b5f7 350 Gene3D G3DSA:3.40.190.10 131 290 3.9E-36 T 06-07-2017 CDO28_RS25380 1ca8de7ba8449e04a18d88e4bc52b5f7 350 Pfam PF13416 Bacterial extracellular solute-binding protein 69 314 3.8E-36 T 06-07-2017 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 283 361 1.2E-28 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 108 191 2.07E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 457 530 1.8E-15 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 196 266 3.3E-28 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 25 93 2.5E-10 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 281 353 9.2E-26 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 368 440 3.5E-20 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SMART SM00316 109 177 1.7E-7 T 06-07-2017 IPR022967 RNA-binding domain, S1 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 195 283 5.54E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 457 543 4.93E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PIRSF PIRSF002111 1 544 4.0E-194 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 198 282 1.3E-30 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 29 106 1.7E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 27 45 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 90 109 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 218 239 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 132 149 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 45 59 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 336 354 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 161 181 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 296 315 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 PRINTS PR00681 Ribosomal protein S1 signature 114 130 6.2E-85 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 14 118 7.38E-20 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 348 446 5.45E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 367 440 2.1E-18 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 107 177 6.3E-14 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 456 530 1.2E-16 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 25 92 3.2E-13 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 280 353 6.4E-21 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Pfam PF00575 S1 RNA binding domain 195 266 5.6E-21 T 06-07-2017 IPR003029 S1 domain GO:0003676 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 362 442 7.7E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 455 531 2.3E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 Gene3D G3DSA:2.40.50.140 107 178 1.6E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 10 530 2.1E-188 T 06-07-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDO28_RS09305 9b9e1be3ac4abde8c32511d006af5152 568 SUPERFAMILY SSF50249 261 363 5.72E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09550 469ed33032c703092de50320b39e4323 217 Pfam PF01625 Peptide methionine sulfoxide reductase 51 204 7.3E-63 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS09550 469ed33032c703092de50320b39e4323 217 Gene3D G3DSA:3.30.1060.10 13 204 7.8E-75 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS09550 469ed33032c703092de50320b39e4323 217 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 49 204 2.5E-61 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS09550 469ed33032c703092de50320b39e4323 217 SUPERFAMILY SSF55068 8 214 1.01E-78 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS09550 469ed33032c703092de50320b39e4323 217 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 48 210 37.695 T 06-07-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 SUPERFAMILY SSF75516 22 168 9.55E-20 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 Pfam PF03472 Autoinducer binding domain 27 164 3.4E-18 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 Gene3D G3DSA:1.10.10.10 185 242 4.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 SUPERFAMILY SSF46894 168 242 2.24E-20 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 SMART SM00421 179 236 2.2E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 Gene3D G3DSA:3.30.450.80 64 184 7.2E-18 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 236 2.7E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 212 224 1.1E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 196 1.1E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 212 1.1E-9 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS00065 f90653faa211d66fe1c47b3b18298589 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 196 223 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 SUPERFAMILY SSF54631 263 338 3.14E-5 T 06-07-2017 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 38 335 1.1E-104 T 06-07-2017 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 SUPERFAMILY SSF52540 37 265 1.05E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 SMART SM00382 54 243 6.3E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 Pfam PF00005 ABC transporter 45 193 2.0E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 Gene3D G3DSA:3.10.580.10 276 336 3.7E-4 T 06-07-2017 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17535 74c313de48c5a1213ab1e6c35bf7cbe3 348 Gene3D G3DSA:3.40.50.300 4 268 8.5E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21060 7fbb31b197eebb849d173ee8f821a531 356 Pfam PF00487 Fatty acid desaturase 61 306 6.3E-32 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Gene3D G3DSA:3.90.190.20 328 465 1.6E-35 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Gene3D G3DSA:3.40.1190.10 89 319 7.1E-65 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 464 30.755 T 06-07-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 31 463 2.1E-109 T 06-07-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Pfam PF08245 Mur ligase middle domain 112 302 7.7E-46 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 391 1.4E-10 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 SUPERFAMILY SSF53244 328 463 2.98E-31 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Pfam PF01225 Mur ligase family, catalytic domain 26 96 1.6E-12 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 Gene3D G3DSA:3.40.1390.10 5 72 1.4E-19 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 SUPERFAMILY SSF63418 4 103 1.11E-19 T 06-07-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDO28_RS16375 062cf027d9e4b05a9c16de53f5249235 477 SUPERFAMILY SSF53623 108 320 9.55E-52 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS29685 74b3a800dda2c62a5bc2d879da00e1d9 422 Pfam PF05161 MOFRL family 311 415 5.3E-35 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS29685 74b3a800dda2c62a5bc2d879da00e1d9 422 Gene3D G3DSA:3.40.50.10180 11 242 1.2E-90 T 06-07-2017 CDO28_RS29685 74b3a800dda2c62a5bc2d879da00e1d9 422 SUPERFAMILY SSF82544 5 421 4.18E-145 T 06-07-2017 CDO28_RS29685 74b3a800dda2c62a5bc2d879da00e1d9 422 Gene3D G3DSA:3.40.1480.10 243 422 8.6E-69 T 06-07-2017 IPR007835 MOFRL domain Reactome: R-HSA-70350 CDO28_RS29685 74b3a800dda2c62a5bc2d879da00e1d9 422 Pfam PF13660 Domain of unknown function (DUF4147) 11 231 4.4E-75 T 06-07-2017 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 Pfam PF05226 CHASE2 domain 26 305 1.1E-37 T 06-07-2017 IPR007890 CHASE2 CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 Gene3D G3DSA:3.30.70.1230 404 596 2.0E-44 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 SUPERFAMILY SSF55073 401 595 1.88E-55 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 SMART SM00044 367 585 4.0E-15 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 SMART SM01080 36 311 2.0E-55 T 06-07-2017 IPR007890 CHASE2 CDO28_RS30100 9cb9bd03c89ff6626653ede2a79770b2 649 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 406 591 7.4E-32 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 SUPERFAMILY SSF64484 13 234 0.0 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 SUPERFAMILY SSF64484 1061 1365 0.0 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 SUPERFAMILY SSF64484 353 948 0.0 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.40.270.10 1082 1264 1.6E-87 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.40.270.10 802 829 1.6E-87 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.40.50.100 725 801 3.4E-29 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF04561 RNA polymerase Rpb2, domain 2 179 231 5.7E-6 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF04561 RNA polymerase Rpb2, domain 2 357 464 8.8E-19 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF00562 RNA polymerase Rpb2, domain 6 728 1286 5.7E-167 T 06-07-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF04560 RNA polymerase Rpb2, domain 7 1288 1362 1.9E-26 T 06-07-2017 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF10385 RNA polymerase beta subunit external 1 domain 601 666 1.6E-23 T 06-07-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF04563 RNA polymerase beta subunit 29 507 2.7E-34 T 06-07-2017 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Pfam PF04565 RNA polymerase Rpb2, domain 3 523 591 1.3E-31 T 06-07-2017 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:3.90.1110.10 161 238 1.4E-70 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:3.90.1110.10 356 454 1.4E-70 T 06-07-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:3.90.1100.10 21 159 2.8E-148 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:3.90.1100.10 455 601 2.8E-148 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:3.90.1100.10 669 723 2.8E-148 T 06-07-2017 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1364 12.436 T 06-07-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 12 1361 0.0 T 06-07-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.40.50.150 1067 1081 1.5E-58 T 06-07-2017 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.40.50.150 836 946 1.5E-58 T 06-07-2017 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1085 1097 - T 06-07-2017 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS03670 c376fc255a894406281cbbc304236662 1380 Gene3D G3DSA:2.30.150.10 602 666 1.5E-26 T 06-07-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PRINTS PR00046 Major sigma-70 factor signature 77 90 2.8E-20 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PRINTS PR00046 Major sigma-70 factor signature 254 269 2.8E-20 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PRINTS PR00046 Major sigma-70 factor signature 101 109 2.8E-20 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PRINTS PR00046 Major sigma-70 factor signature 235 247 2.8E-20 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PRINTS PR00046 Major sigma-70 factor signature 269 280 2.8E-20 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Pfam PF04545 Sigma-70, region 4 231 281 2.8E-15 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 SUPERFAMILY SSF88659 192 287 1.2E-18 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Gene3D G3DSA:1.10.601.10 16 119 3.6E-39 T 06-07-2017 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 254 280 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 286 52.483 T 06-07-2017 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Gene3D G3DSA:1.10.10.10 227 290 1.2E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Pfam PF00140 Sigma-70 factor, region 1.2 18 46 3.5E-8 T 06-07-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 283 3.2E-27 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 285 1.9E-113 T 06-07-2017 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 Pfam PF04542 Sigma-70 region 2 53 121 9.4E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 SUPERFAMILY SSF88946 12 121 5.97E-39 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13490 ecf6be3a90d8f59585a3a6470b2fea67 301 PIRSF PIRSF000770 10 298 5.2E-38 T 06-07-2017 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 SMART SM00342 18 101 1.1E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 Gene3D G3DSA:1.10.10.60 55 108 1.5E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 SUPERFAMILY SSF46689 54 106 4.21E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 97 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 Pfam PF06445 GyrI-like small molecule binding domain 127 278 1.3E-29 T 06-07-2017 IPR029442 GyrI-like small molecule binding domain CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 SUPERFAMILY SSF46689 3 52 3.14E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 Pfam PF12833 Helix-turn-helix domain 24 103 1.9E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 70 85 2.4E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 85 101 2.4E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 Gene3D G3DSA:1.10.10.60 3 54 2.6E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 SMART SM00871 126 278 1.0E-30 T 06-07-2017 IPR010499 Bacterial transcription activator, effector binding CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 SUPERFAMILY SSF55136 125 278 8.63E-33 T 06-07-2017 IPR011256 Regulatory factor, effector binding domain CDO28_RS12600 a0995784a68aed657b140c19fc7cf504 279 Gene3D G3DSA:3.20.80.10 127 278 2.8E-29 T 06-07-2017 IPR011256 Regulatory factor, effector binding domain CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 SMART SM00387 245 366 2.0E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 SMART SM00388 140 204 9.0E-13 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 SUPERFAMILY SSF55785 18 118 4.61E-6 T 06-07-2017 IPR000014 PAS domain CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 199 2.2E-12 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 363 6.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 326 6.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 345 6.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 312 6.1E-14 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 247 364 3.8E-15 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 SUPERFAMILY SSF55874 208 363 2.88E-32 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Gene3D G3DSA:3.30.450.20 15 120 1.0E-14 T 06-07-2017 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Gene3D G3DSA:1.10.287.130 137 194 1.2E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 SUPERFAMILY SSF47384 135 199 2.94E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Pfam PF00989 PAS fold 18 120 2.1E-8 T 06-07-2017 IPR013767 PAS fold GO:0006355 CDO28_RS03095 deae8080885ddd1113635b8a8ef7e1b8 382 Gene3D G3DSA:3.30.565.10 208 364 2.5E-33 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS34280 1e69e70f38e5ef256e407b8663548425 233 SUPERFAMILY SSF101082 21 202 6.8E-9 T 06-07-2017 IPR023220 Type IV secretion system, VirB5-domain CDO28_RS34280 1e69e70f38e5ef256e407b8663548425 233 Pfam PF07996 Type IV secretion system proteins 20 192 8.7E-9 T 06-07-2017 IPR014158 Type IV secretion system, VirB5 CDO28_RS34280 1e69e70f38e5ef256e407b8663548425 233 Gene3D G3DSA:1.20.58.430 20 198 3.2E-6 T 06-07-2017 IPR023220 Type IV secretion system, VirB5-domain CDO28_RS10075 1959a6b94af12c960f0414661837b031 594 PIRSF PIRSF006060 12 571 1.8E-83 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS10075 1959a6b94af12c960f0414661837b031 594 Pfam PF13520 Amino acid permease 21 528 4.7E-97 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS07580 14ddbb739efb5d7f44b71910f26ceff6 70 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 15 68 17.606 T 06-07-2017 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CDO28_RS07580 14ddbb739efb5d7f44b71910f26ceff6 70 SUPERFAMILY SSF57716 16 68 1.78E-15 T 06-07-2017 CDO28_RS07580 14ddbb739efb5d7f44b71910f26ceff6 70 Gene3D G3DSA:3.30.50.10 15 68 2.4E-20 T 06-07-2017 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 CDO28_RS07580 14ddbb739efb5d7f44b71910f26ceff6 70 Pfam PF03884 Domain of unknown function (DUF329) 21 64 1.2E-12 T 06-07-2017 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CDO28_RS24095 ff466459e08065c084b88c032378f8f0 408 Pfam PF07690 Major Facilitator Superfamily 27 300 6.1E-24 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS24095 ff466459e08065c084b88c032378f8f0 408 SUPERFAMILY SSF103473 15 397 6.54E-47 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS24095 ff466459e08065c084b88c032378f8f0 408 Gene3D G3DSA:1.20.1250.20 229 400 1.6E-11 T 06-07-2017 CDO28_RS24095 ff466459e08065c084b88c032378f8f0 408 Gene3D G3DSA:1.20.1250.20 21 197 1.8E-17 T 06-07-2017 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 SUPERFAMILY SSF51011 473 542 7.65E-8 T 06-07-2017 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 SMART SM00642 19 411 4.3E-124 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Gene3D G3DSA:3.20.20.80 182 472 2.0E-102 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Gene3D G3DSA:3.20.20.80 10 110 2.0E-102 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Gene3D G3DSA:3.90.400.10 111 181 3.4E-30 T 06-07-2017 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Pfam PF00128 Alpha amylase, catalytic domain 34 384 1.2E-88 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Gene3D G3DSA:2.60.40.1180 480 515 1.3E-7 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 Pfam PF16657 Maltogenic Amylase, C-terminal domain 473 514 2.2E-6 T 06-07-2017 IPR032091 Maltogenic Amylase, C-terminal CDO28_RS15175 30593876ac8a74fe7cc7bff759880b84 547 SUPERFAMILY SSF51445 10 470 1.52E-135 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 SUPERFAMILY SSF54826 3 128 1.77E-30 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 SUPERFAMILY SSF51604 115 358 1.26E-71 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 194 225 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 Gene3D G3DSA:3.20.20.120 123 359 5.8E-75 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 Gene3D G3DSA:3.30.390.10 2 122 1.3E-35 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 SMART SM00922 147 244 1.5E-28 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 Pfam PF13378 Enolase C-terminal domain-like 151 355 1.1E-61 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS26185 b268515c3cf72ee4e13440c800e10a17 370 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 21 127 1.5E-19 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 8.7E-14 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 Gene3D G3DSA:1.10.357.10 12 159 1.2E-25 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 SUPERFAMILY SSF46689 7 81 1.49E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.8E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.8E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS15130 def250e4091233fe69c0e9d2559b5125 186 SUPERFAMILY SSF48498 94 183 1.2E-15 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS23245 73eb881a4afbc70bc14b681bbd69053f 224 Pfam PF07929 Plasmid pRiA4b ORF-3-like protein 24 199 2.2E-54 T 06-07-2017 IPR012912 Plasmid pRiA4b, Orf3 CDO28_RS23245 73eb881a4afbc70bc14b681bbd69053f 224 Gene3D G3DSA:3.10.290.30 26 202 2.6E-53 T 06-07-2017 IPR024047 Protein MM3350-like domain CDO28_RS23245 73eb881a4afbc70bc14b681bbd69053f 224 SUPERFAMILY SSF159941 28 202 7.19E-51 T 06-07-2017 IPR024047 Protein MM3350-like domain CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 PIRSF PIRSF000505 9 450 3.9E-117 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 ProSitePatterns PS00885 EPSP synthase signature 2. 351 369 - T 06-07-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 20 445 3.9E-133 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 16 446 33.152 T 06-07-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 13 437 1.2E-104 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 SUPERFAMILY SSF55205 13 446 8.83E-125 T 06-07-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 ProSitePatterns PS00104 EPSP synthase signature 1. 94 108 - T 06-07-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 Gene3D G3DSA:3.65.10.10 26 209 8.5E-45 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS09315 f2771864c4086005274e0c3417c5d6e8 455 Gene3D G3DSA:3.65.10.10 210 449 2.9E-60 T 06-07-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 SUPERFAMILY SSF53850 92 296 2.35E-40 T 06-07-2017 CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Gene3D G3DSA:1.10.10.10 4 88 3.0E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 SUPERFAMILY SSF46785 7 88 1.17E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Pfam PF03466 LysR substrate binding domain 97 298 3.2E-21 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Gene3D G3DSA:3.40.190.10 92 173 4.2E-24 T 06-07-2017 CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Gene3D G3DSA:3.40.190.10 274 301 4.2E-24 T 06-07-2017 CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Gene3D G3DSA:3.40.190.10 174 269 1.2E-33 T 06-07-2017 CDO28_RS19170 540eeb51a7250f1dd77be36658085ad6 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 5.3E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 Gene3D G3DSA:2.30.30.50 134 219 8.6E-38 T 06-07-2017 CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 SUPERFAMILY SSF50090 1 219 8.24E-83 T 06-07-2017 IPR008990 Electron transport accessory protein-like domain CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 PIRSF PIRSF001427 1 219 2.4E-70 T 06-07-2017 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 Pfam PF02211 Nitrile hydratase beta subunit 1 217 1.6E-86 T 06-07-2017 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 Gene3D G3DSA:1.10.472.20 1 133 3.0E-48 T 06-07-2017 CDO28_RS16765 8dc9ba5ad5b3b0964b1751737ae25a46 219 TIGRFAM TIGR03888 nitrile_beta: nitrile hydratase, beta subunit 1 219 3.3E-75 T 06-07-2017 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS17365 268ebcd515791a017fc152886b21fc7d 90 Pfam PF02583 Metal-sensitive transcriptional repressor 8 86 2.0E-20 T 06-07-2017 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CDO28_RS29470 9733364d16093cd5c0eeee4b4a24db97 373 SUPERFAMILY SSF55729 2 92 1.06E-8 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS29470 9733364d16093cd5c0eeee4b4a24db97 373 Gene3D G3DSA:3.40.630.30 2 95 2.1E-5 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS17660 30a70aafad85b402510b8cb5c41b1c96 158 Pfam PF07977 FabA-like domain 4 122 1.6E-19 T 06-07-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS17660 30a70aafad85b402510b8cb5c41b1c96 158 SUPERFAMILY SSF54637 6 125 4.98E-28 T 06-07-2017 IPR029069 HotDog domain CDO28_RS17660 30a70aafad85b402510b8cb5c41b1c96 158 Gene3D G3DSA:3.10.129.10 6 125 8.1E-29 T 06-07-2017 IPR029069 HotDog domain CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Gene3D G3DSA:2.40.50.140 67 128 2.8E-22 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 SUPERFAMILY SSF50249 130 187 4.28E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Pfam PF09285 Elongation factor P, C-terminal 131 186 2.7E-21 T 06-07-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 3.4E-63 T 06-07-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Gene3D G3DSA:2.40.50.140 130 187 1.8E-22 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 SUPERFAMILY SSF50249 67 128 2.64E-16 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Hamap MF_00141 Elongation factor P [efp]. 3 187 43.663 T 06-07-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Gene3D G3DSA:2.30.30.30 6 65 3.4E-18 T 06-07-2017 IPR014722 Ribosomal protein L2 domain 2 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 06-07-2017 IPR013852 Translation elongation factor P/YeiP, conserved site CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 PIRSF PIRSF005901 2 188 2.0E-59 T 06-07-2017 IPR020599 Translation elongation factor P/YeiP CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 1.0E-16 T 06-07-2017 IPR013185 Translation elongation factor, KOW-like CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 SMART SM01185 69 123 1.5E-22 T 06-07-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 123 8.9E-19 T 06-07-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 SUPERFAMILY SSF50104 6 65 2.17E-12 T 06-07-2017 IPR008991 Translation protein SH3-like domain CDO28_RS09170 9fa913131196ea28b3cd705af5ed2d70 189 SMART SM00841 131 186 7.6E-28 T 06-07-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CDO28_RS15355 0d85dc5db6c8d45cddbce7bb4e7ce73f 163 Pfam PF00293 NUDIX domain 34 145 3.0E-16 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS15355 0d85dc5db6c8d45cddbce7bb4e7ce73f 163 ProSitePatterns PS00893 Nudix box signature. 62 83 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS15355 0d85dc5db6c8d45cddbce7bb4e7ce73f 163 SUPERFAMILY SSF55811 4 155 2.03E-26 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS15355 0d85dc5db6c8d45cddbce7bb4e7ce73f 163 Gene3D G3DSA:3.90.79.10 33 156 2.3E-24 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 SUPERFAMILY SSF161098 162 434 6.32E-48 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 538 709 1.4E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 241 428 1.0E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 SUPERFAMILY SSF161098 455 720 8.5E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 Gene3D G3DSA:1.10.3720.10 460 720 2.2E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32405 685693871aa7a507d9be16b8b2106bc6 742 Gene3D G3DSA:1.10.3720.10 164 432 3.8E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29675 9b55557b5b74fcdf43b6c5386f9403cb 306 Pfam PF06059 Domain of Unknown Function (DUF930) 206 303 1.9E-33 T 06-07-2017 IPR009273 Protein of unknown function DUF930 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 06-07-2017 IPR018102 Ribosomal S11, conserved site CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.7E-57 T 06-07-2017 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 Pfam PF00411 Ribosomal protein S11 19 128 3.4E-51 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 33.52 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 Gene3D G3DSA:3.30.420.80 6 129 1.8E-56 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 PIRSF PIRSF002131 1 129 1.0E-52 T 06-07-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03515 a9d46ec99dec86a143735211d7854c53 129 SUPERFAMILY SSF53137 14 129 2.12E-49 T 06-07-2017 CDO28_RS26335 09e3e61fe89ce8bc5901198e4d2f85c9 219 SUPERFAMILY SSF161098 16 204 3.01E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26335 09e3e61fe89ce8bc5901198e4d2f85c9 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 110 2.4E-26 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS26335 09e3e61fe89ce8bc5901198e4d2f85c9 219 Gene3D G3DSA:1.10.3720.10 15 215 6.7E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26335 09e3e61fe89ce8bc5901198e4d2f85c9 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 1.1E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18520 80b2ff6c60ac31c6219f898cf50846e5 150 SUPERFAMILY SSF102712 27 114 7.85E-8 T 06-07-2017 CDO28_RS18520 80b2ff6c60ac31c6219f898cf50846e5 150 ProDom PD095314 PLASMID MEMBRANE MLL6193 PRECURSOR TRANSMEMBRANE Y4JG SIGNAL 12 139 2.0E-41 T 06-07-2017 IPR020232 Uncharacterised protein family, Y4jG, transmembrane CDO28_RS18520 80b2ff6c60ac31c6219f898cf50846e5 150 Gene3D G3DSA:3.40.140.10 25 101 3.2E-4 T 06-07-2017 CDO28_RS18520 80b2ff6c60ac31c6219f898cf50846e5 150 Pfam PF14464 Prokaryotic homologs of the JAB domain 24 112 4.4E-11 T 06-07-2017 IPR028090 JAB domain, prokaryotic CDO28_RS00360 33fbdf71dedd4a533d06fe00c46e21bd 111 SUPERFAMILY SSF52833 2 105 2.39E-36 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00360 33fbdf71dedd4a533d06fe00c46e21bd 111 PIRSF PIRSF005894 1 108 4.6E-53 T 06-07-2017 IPR014434 Monothiol glutaredoxin CDO28_RS00360 33fbdf71dedd4a533d06fe00c46e21bd 111 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 7.1E-48 T 06-07-2017 IPR004480 Monothiol glutaredoxin-related CDO28_RS00360 33fbdf71dedd4a533d06fe00c46e21bd 111 Pfam PF00462 Glutaredoxin 17 81 4.6E-19 T 06-07-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDO28_RS00360 33fbdf71dedd4a533d06fe00c46e21bd 111 Gene3D G3DSA:3.40.30.10 8 101 3.4E-36 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00335 f2674e0e8903fe5de2c36bd99d621330 315 Pfam PF04960 Glutaminase 28 313 2.8E-116 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CDO28_RS00335 f2674e0e8903fe5de2c36bd99d621330 315 Gene3D G3DSA:3.40.710.10 8 313 1.9E-124 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS00335 f2674e0e8903fe5de2c36bd99d621330 315 Hamap MF_00313 Glutaminase [glsA]. 10 313 47.597 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CDO28_RS00335 f2674e0e8903fe5de2c36bd99d621330 315 TIGRFAM TIGR03814 Gln_ase: glutaminase A 14 313 4.2E-130 T 06-07-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CDO28_RS00335 f2674e0e8903fe5de2c36bd99d621330 315 SUPERFAMILY SSF56601 9 313 1.38E-117 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 Gene3D G3DSA:2.40.30.30 192 312 7.1E-34 T 06-07-2017 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 SMART SM00904 187 312 7.0E-51 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 SUPERFAMILY SSF82114 178 315 3.49E-38 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 SUPERFAMILY SSF52374 21 181 3.26E-31 T 06-07-2017 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 Gene3D G3DSA:3.40.50.620 11 190 2.8E-56 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 Pfam PF06574 FAD synthetase 15 170 1.0E-51 T 06-07-2017 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 PIRSF PIRSF004491 1 317 1.6E-86 T 06-07-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 Pfam PF01687 Riboflavin kinase 188 311 7.0E-31 T 06-07-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDO28_RS06610 6f1068c160a5d75ab90d3f5e5e03c0c0 327 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 22 311 7.9E-75 T 06-07-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 PIRSF PIRSF002741 3 523 2.0E-100 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 Gene3D G3DSA:3.90.76.10 41 197 9.1E-38 T 06-07-2017 CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 SUPERFAMILY SSF53850 26 522 2.67E-120 T 06-07-2017 CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 439 1.1E-87 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 Gene3D G3DSA:3.10.105.10 300 487 2.4E-51 T 06-07-2017 CDO28_RS20960 95daf8b374169060a44d22d71c0353bb 530 Gene3D G3DSA:3.40.190.10 198 299 1.7E-27 T 06-07-2017 CDO28_RS07075 f13944f98ae4d4f58df02a9637a28d34 291 SUPERFAMILY SSF53850 94 277 1.14E-9 T 06-07-2017 CDO28_RS07075 f13944f98ae4d4f58df02a9637a28d34 291 SUPERFAMILY SSF46785 5 102 1.12E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07075 f13944f98ae4d4f58df02a9637a28d34 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 1.0E-13 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS07075 f13944f98ae4d4f58df02a9637a28d34 291 Gene3D G3DSA:1.10.10.10 5 83 1.6E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11360 980d2d6819d2bf93fe270859f83634df 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 325 9.1E-39 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 SUPERFAMILY SSF75516 22 174 3.27E-21 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 Pfam PF03472 Autoinducer binding domain 25 170 1.1E-23 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 184 238 1.5E-14 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 SMART SM00421 182 239 8.1E-17 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 215 1.8E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 199 1.8E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 227 1.8E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 Gene3D G3DSA:1.10.10.10 188 245 1.9E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 SUPERFAMILY SSF46894 173 245 2.45E-16 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS06450 3352f3ad443017fa3f0e09ba1ef75e90 246 Gene3D G3DSA:3.30.450.80 23 187 3.0E-20 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 113 5.4E-14 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 SMART SM00922 131 222 1.5E-17 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 Pfam PF13378 Enolase C-terminal domain-like 134 288 2.8E-27 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 SUPERFAMILY SSF54826 5 113 5.3E-30 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 SUPERFAMILY SSF51604 119 327 7.73E-55 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 Gene3D G3DSA:3.30.390.10 4 103 6.8E-40 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS00090 eb5f8b883952aec6ca9e21c2b02ea3ca 327 Gene3D G3DSA:3.20.20.120 119 315 2.0E-59 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24060 7d9c7eb7a968203c5312370c9a9b1189 233 PIRSF PIRSF000013 1 202 4.4E-107 T 06-07-2017 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 CDO28_RS24060 7d9c7eb7a968203c5312370c9a9b1189 233 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 9 193 1.2E-95 T 06-07-2017 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 CDO28_RS24060 7d9c7eb7a968203c5312370c9a9b1189 233 Gene3D G3DSA:1.10.3820.10 20 192 1.9E-26 T 06-07-2017 CDO28_RS24060 7d9c7eb7a968203c5312370c9a9b1189 233 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 20 192 4.4E-73 T 06-07-2017 IPR005126 NapC/NirT cytochrome c, N-terminal CDO28_RS24060 7d9c7eb7a968203c5312370c9a9b1189 233 SUPERFAMILY SSF48695 16 196 5.55E-64 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 Gene3D G3DSA:3.40.50.2300 172 335 2.0E-51 T 06-07-2017 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 Gene3D G3DSA:1.10.260.40 1 47 2.7E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 SUPERFAMILY SSF53822 78 329 2.75E-44 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.3E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 9.7E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 9.7E-5 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 06-07-2017 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 Pfam PF13377 Periplasmic binding protein-like domain 173 335 3.3E-36 T 06-07-2017 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 SUPERFAMILY SSF47413 2 50 2.97E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 SMART SM00354 1 70 1.3E-6 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30550 c14fd9a90dcfe6fc0d753aab59437b9a 359 Gene3D G3DSA:3.40.50.2300 78 171 2.1E-5 T 06-07-2017 CDO28_RS26785 3345923b404e152eb9febaa45547e2dc 264 Gene3D G3DSA:3.75.10.10 8 258 2.3E-61 T 06-07-2017 CDO28_RS26785 3345923b404e152eb9febaa45547e2dc 264 Pfam PF02274 Amidinotransferase 32 257 9.8E-21 T 06-07-2017 CDO28_RS26785 3345923b404e152eb9febaa45547e2dc 264 SUPERFAMILY SSF55909 8 262 5.23E-49 T 06-07-2017 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Pfam PF00512 His Kinase A (phospho-acceptor) domain 598 665 2.2E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Gene3D G3DSA:3.30.565.10 651 818 3.3E-39 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Pfam PF12860 PAS fold 469 581 2.0E-6 T 06-07-2017 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Pfam PF12860 PAS fold 341 455 1.7E-9 T 06-07-2017 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SUPERFAMILY SSF55874 654 816 1.57E-40 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SUPERFAMILY SSF55785 319 376 2.09E-5 T 06-07-2017 IPR000014 PAS domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SMART SM00387 711 818 6.4E-29 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SUPERFAMILY SSF47384 581 665 9.02E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 802 815 5.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 748 762 5.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 778 796 5.9E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 712 816 3.5E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SMART SM00388 597 665 1.0E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Gene3D G3DSA:1.10.287.130 589 650 7.7E-16 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 SUPERFAMILY SSF55785 447 517 1.4E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Gene3D G3DSA:3.30.450.20 213 321 7.3E-5 T 06-07-2017 CDO28_RS10450 6c16a28cc8f9062040294fb86446a2d4 826 Gene3D G3DSA:3.30.450.20 448 509 1.8E-6 T 06-07-2017 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 Gene3D G3DSA:3.50.50.60 270 348 9.0E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 Gene3D G3DSA:3.50.50.60 7 175 9.0E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 Pfam PF01494 FAD binding domain 6 320 5.1E-18 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 2.2E-16 T 06-07-2017 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 2.2E-16 T 06-07-2017 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 2.2E-16 T 06-07-2017 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 2.2E-16 T 06-07-2017 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 SUPERFAMILY SSF51905 6 169 2.37E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 SUPERFAMILY SSF51905 269 361 2.37E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02975 808aa9d5936146f21e8fd3d535624537 387 SUPERFAMILY SSF54373 173 275 8.44E-13 T 06-07-2017 CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 SMART SM01091 350 428 1.0E-24 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Gene3D G3DSA:3.10.580.10 203 329 9.8E-20 T 06-07-2017 CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Pfam PF00571 CBS domain 290 335 4.1E-6 T 06-07-2017 IPR000644 CBS domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Pfam PF00571 CBS domain 223 270 0.0022 T 06-07-2017 IPR000644 CBS domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Pfam PF03471 Transporter associated domain 351 425 4.1E-19 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Gene3D G3DSA:3.30.465.10 330 426 7.0E-26 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 SUPERFAMILY SSF56176 349 430 1.55E-20 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 SMART SM00116 287 335 0.12 T 06-07-2017 IPR000644 CBS domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 SMART SM00116 221 270 3.3 T 06-07-2017 IPR000644 CBS domain CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 Pfam PF01595 Domain of unknown function DUF21 18 193 1.1E-43 T 06-07-2017 IPR002550 Domain of unknown function DUF21 CDO28_RS13750 80b9ed8d157cb66f7bdca2791c9d0458 434 SUPERFAMILY SSF54631 207 352 1.46E-32 T 06-07-2017 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 9 390 53.189 T 06-07-2017 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 Gene3D G3DSA:3.90.1150.10 257 392 2.0E-45 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 PIRSF PIRSF001434 1 393 2.3E-127 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 Gene3D G3DSA:3.40.640.10 6 255 8.1E-84 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 SUPERFAMILY SSF53383 22 391 2.04E-114 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 8 389 3.5E-167 T 06-07-2017 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 CDO28_RS07970 550f8f49b6e318d4eb96dc3d0172b977 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 390 8.2E-129 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 SUPERFAMILY SSF46785 3 75 4.86E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.3E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Gene3D G3DSA:3.40.190.10 190 275 2.5E-17 T 06-07-2017 CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 SUPERFAMILY SSF53850 96 306 4.52E-26 T 06-07-2017 CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Pfam PF03466 LysR substrate binding domain 103 308 8.6E-16 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Gene3D G3DSA:1.10.10.10 2 74 2.0E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Gene3D G3DSA:3.40.190.10 96 181 2.7E-13 T 06-07-2017 CDO28_RS19160 3468388f2957e3fac19488ebb7153671 327 Gene3D G3DSA:3.40.190.10 283 311 2.7E-13 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 SUPERFAMILY SSF54373 224 326 9.81E-29 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 705 802 9.4E-18 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:2.40.30.110 722 802 2.9E-23 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.30.9.10 224 326 6.0E-53 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.30.9.10 90 144 6.0E-53 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.30.1360.120 422 502 1.1E-11 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.30.1360.120 573 675 6.8E-24 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 SUPERFAMILY SSF51905 327 412 1.36E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 SUPERFAMILY SSF51905 9 224 1.36E-66 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 SUPERFAMILY SSF103025 419 720 1.08E-100 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.30.70.1400 503 572 2.2E-22 T 06-07-2017 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.50.50.60 145 223 1.0E-65 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.50.50.60 327 385 1.0E-65 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Gene3D G3DSA:3.50.50.60 4 86 1.0E-65 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Pfam PF01571 Aminomethyltransferase folate-binding domain 426 698 3.5E-78 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Pfam PF01266 FAD dependent oxidoreductase 10 366 4.2E-63 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 Pfam PF16350 FAD dependent oxidoreductase central domain 372 424 1.7E-21 T 06-07-2017 IPR032503 FAD dependent oxidoreductase, central domain CDO28_RS27600 2f614cbf9fb0e69992893d2f909e5066 825 SUPERFAMILY SSF101790 724 815 1.96E-19 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 SUPERFAMILY SSF53743 6 335 4.97E-82 T 06-07-2017 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 2 286 3.0E-11 T 06-07-2017 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 SUPERFAMILY SSF50443 332 475 2.88E-37 T 06-07-2017 IPR004216 L-fucose/L-arabinose isomerase, C-terminal CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 Pfam PF02610 L-arabinose isomerase 70 351 2.4E-18 T 06-07-2017 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 Gene3D G3DSA:3.20.14.10 338 471 1.5E-18 T 06-07-2017 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 CDO28_RS28950 1f8c3c6c26a3deed5cfa815419155448 475 Pfam PF02952 L-fucose isomerase, C-terminal domain 366 472 8.6E-8 T 06-07-2017 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 CDO28_RS29885 9989029047f09b95a204954e04f96314 508 SMART SM00382 286 488 2.9E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29885 9989029047f09b95a204954e04f96314 508 SMART SM00382 37 225 3.6E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29885 9989029047f09b95a204954e04f96314 508 Gene3D G3DSA:3.40.50.300 257 504 8.5E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29885 9989029047f09b95a204954e04f96314 508 SUPERFAMILY SSF52540 11 229 2.17E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29885 9989029047f09b95a204954e04f96314 508 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS29885 9989029047f09b95a204954e04f96314 508 Pfam PF00005 ABC transporter 278 431 1.2E-15 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29885 9989029047f09b95a204954e04f96314 508 Pfam PF00005 ABC transporter 30 177 7.9E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29885 9989029047f09b95a204954e04f96314 508 SUPERFAMILY SSF52540 264 496 3.89E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29885 9989029047f09b95a204954e04f96314 508 Gene3D G3DSA:3.40.50.300 11 235 9.1E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16245 9348e5e4057b30f6bc8a4ce9ad9e0a61 317 SUPERFAMILY SSF103481 217 302 3.27E-13 T 06-07-2017 CDO28_RS16245 9348e5e4057b30f6bc8a4ce9ad9e0a61 317 Pfam PF00892 EamA-like transporter family 161 298 4.0E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS16245 9348e5e4057b30f6bc8a4ce9ad9e0a61 317 Pfam PF00892 EamA-like transporter family 19 150 7.1E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS16245 9348e5e4057b30f6bc8a4ce9ad9e0a61 317 SUPERFAMILY SSF103481 53 154 5.1E-12 T 06-07-2017 CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 SUPERFAMILY SSF47616 85 200 8.1E-17 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 SUPERFAMILY SSF52833 6 88 6.73E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 Gene3D G3DSA:3.40.30.10 13 93 6.4E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 Gene3D G3DSA:1.20.1050.10 94 207 3.7E-36 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 Pfam PF13410 Glutathione S-transferase, C-terminal domain 131 199 5.1E-7 T 06-07-2017 CDO28_RS11010 bd98916a59934b86524da550a1cbc12f 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 82 1.3E-12 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS30970 e4948137110a77259d49d45b62729032 338 SUPERFAMILY SSF51735 1 264 3.18E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30970 e4948137110a77259d49d45b62729032 338 Pfam PF00106 short chain dehydrogenase 9 192 2.1E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.1E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS30970 e4948137110a77259d49d45b62729032 338 Gene3D G3DSA:3.40.50.720 8 230 3.4E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30970 e4948137110a77259d49d45b62729032 338 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31855 c4008adef84dfc4800dbe3fe2a546667 149 Gene3D G3DSA:3.30.530.20 2 144 3.6E-33 T 06-07-2017 IPR023393 START-like domain CDO28_RS31855 c4008adef84dfc4800dbe3fe2a546667 149 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 134 1.6E-26 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS31855 c4008adef84dfc4800dbe3fe2a546667 149 SUPERFAMILY SSF55961 3 143 2.38E-35 T 06-07-2017 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 PRINTS PR00313 NodO calcium binding signature 327 336 7.3E-9 T 06-07-2017 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 PRINTS PR00313 NodO calcium binding signature 158 166 7.3E-9 T 06-07-2017 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 PRINTS PR00313 NodO calcium binding signature 128 139 7.3E-9 T 06-07-2017 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 PRINTS PR00313 NodO calcium binding signature 167 175 7.3E-9 T 06-07-2017 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 SUPERFAMILY SSF51120 121 257 6.67E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 145 163 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Gene3D G3DSA:2.150.10.10 290 480 4.8E-29 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Gene3D G3DSA:2.150.10.10 125 207 3.1E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 291 305 58.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 157 174 0.26 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 406 423 0.019 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 317 333 0.0092 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 140 156 0.15 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 234 249 22.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 389 405 17.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 126 138 4.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 SUPERFAMILY SSF51120 349 531 2.88E-19 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS33740 b8d601b21a050f7b512a7bae8ad4f29c 534 SUPERFAMILY SSF51120 215 357 1.16E-14 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS04490 f1b8c76c8aca55911782219405c04a52 112 Pfam PF12840 Helix-turn-helix domain 13 64 2.3E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04490 f1b8c76c8aca55911782219405c04a52 112 SMART SM00418 11 88 1.8E-4 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS04490 f1b8c76c8aca55911782219405c04a52 112 Gene3D G3DSA:1.10.10.10 4 98 8.0E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04490 f1b8c76c8aca55911782219405c04a52 112 SUPERFAMILY SSF46785 3 94 7.66E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07600 43137321a8ca3ca144602a41acacef05 158 Hamap MF_00678 UPF0262 protein . 6 157 40.211 T 06-07-2017 IPR008321 Uncharacterised conserved protein UCP032146 CDO28_RS07600 43137321a8ca3ca144602a41acacef05 158 Pfam PF06793 Uncharacterised protein family (UPF0262) 8 157 1.7E-71 T 06-07-2017 IPR008321 Uncharacterised conserved protein UCP032146 CDO28_RS07600 43137321a8ca3ca144602a41acacef05 158 PIRSF PIRSF032146 1 158 1.2E-87 T 06-07-2017 IPR008321 Uncharacterised conserved protein UCP032146 CDO28_RS26450 f4f6535e1025fdc4f5a8e03e809647c9 732 Gene3D G3DSA:3.40.50.720 356 607 8.9E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26450 f4f6535e1025fdc4f5a8e03e809647c9 732 Pfam PF02719 Polysaccharide biosynthesis protein 357 646 6.6E-109 T 06-07-2017 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CDO28_RS26450 f4f6535e1025fdc4f5a8e03e809647c9 732 SUPERFAMILY SSF51735 354 627 2.08E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12665 60dee581f2dc2fc7ca8bb848878e9c8a 258 SUPERFAMILY SSF53850 22 258 7.06E-89 T 06-07-2017 CDO28_RS12665 60dee581f2dc2fc7ca8bb848878e9c8a 258 PIRSF PIRSF002854 1 258 2.4E-104 T 06-07-2017 IPR004872 Lipoprotein NlpA family CDO28_RS12665 60dee581f2dc2fc7ca8bb848878e9c8a 258 Gene3D G3DSA:3.40.190.10 21 150 6.6E-56 T 06-07-2017 CDO28_RS12665 60dee581f2dc2fc7ca8bb848878e9c8a 258 Pfam PF03180 NLPA lipoprotein 23 258 3.2E-97 T 06-07-2017 IPR004872 Lipoprotein NlpA family CDO28_RS12665 60dee581f2dc2fc7ca8bb848878e9c8a 258 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 20 258 1.2E-74 T 06-07-2017 IPR004872 Lipoprotein NlpA family CDO28_RS30410 e90ba920b8f3f1258fb449689b19380e 89 Pfam PF01402 Ribbon-helix-helix protein, copG family 8 44 7.3E-5 T 06-07-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 CDO28_RS30410 e90ba920b8f3f1258fb449689b19380e 89 SUPERFAMILY SSF47598 5 45 7.23E-10 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 Gene3D G3DSA:3.40.190.10 92 170 2.2E-25 T 06-07-2017 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 Gene3D G3DSA:3.30.70.260 198 278 7.7E-24 T 06-07-2017 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 PIRSF PIRSF001500 1 280 3.8E-60 T 06-07-2017 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 SUPERFAMILY SSF55021 177 278 1.88E-24 T 06-07-2017 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 158 180 - T 06-07-2017 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 SUPERFAMILY SSF53850 7 187 2.31E-60 T 06-07-2017 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 Gene3D G3DSA:3.40.190.10 4 91 6.5E-28 T 06-07-2017 CDO28_RS09470 8c9968a09bbce3a94b01642c932b2b60 284 Pfam PF00800 Prephenate dehydratase 8 184 2.2E-52 T 06-07-2017 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CDO28_RS30825 2a3b0caaca82283b186ac8b9c0dfcc72 398 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 18 397 3.3E-194 T 06-07-2017 IPR017818 Plasmid partitioning protein, RepA CDO28_RS30825 2a3b0caaca82283b186ac8b9c0dfcc72 398 SUPERFAMILY SSF52540 114 363 2.99E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30825 2a3b0caaca82283b186ac8b9c0dfcc72 398 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 119 350 1.6E-41 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS30825 2a3b0caaca82283b186ac8b9c0dfcc72 398 Gene3D G3DSA:3.40.50.300 114 380 1.9E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19040 37f551362e9b68e503f866806ef57517 169 SUPERFAMILY SSF52540 4 166 1.93E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19040 37f551362e9b68e503f866806ef57517 169 Gene3D G3DSA:3.40.50.300 5 166 1.2E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 SMART SM00895 88 210 1.3E-15 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 SMART SM00345 20 78 1.6E-19 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 Gene3D G3DSA:1.10.10.10 19 79 1.1E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 1.5E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 SUPERFAMILY SSF48008 85 215 1.18E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 SUPERFAMILY SSF46785 19 82 4.08E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 2.4E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 2.4E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 Gene3D G3DSA:1.20.120.530 82 223 1.1E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20865 207bfa2a6950a32baf70c69bcffa97a3 230 Pfam PF07729 FCD domain 92 209 1.4E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS05465 21ac6704820c94b5f08d608fec554ada 111 SUPERFAMILY SSF142906 3 105 1.57E-13 T 06-07-2017 CDO28_RS05465 21ac6704820c94b5f08d608fec554ada 111 Pfam PF04237 YjbR 11 97 1.5E-14 T 06-07-2017 IPR007351 Uncharacterised protein YjbR CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 SUPERFAMILY SSF50331 236 363 4.13E-25 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Gene3D G3DSA:3.40.50.300 4 234 9.3E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Gene3D G3DSA:2.40.50.140 282 348 9.3E-10 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Gene3D G3DSA:2.40.50.100 349 363 8.1E-9 T 06-07-2017 CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Gene3D G3DSA:2.40.50.100 239 281 8.1E-9 T 06-07-2017 CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 SUPERFAMILY SSF52540 4 242 3.92E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Pfam PF08402 TOBE domain 278 355 4.5E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 Pfam PF00005 ABC transporter 20 161 9.8E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 SMART SM00382 28 211 3.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26180 100eb374fc13c7856da172cb781e0840 365 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20445 ce80abdb87804a8d6c8a669c5d525111 189 PIRSF PIRSF001296 1 189 1.5E-72 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDO28_RS20445 ce80abdb87804a8d6c8a669c5d525111 189 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 185 5.2E-62 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDO28_RS20445 ce80abdb87804a8d6c8a669c5d525111 189 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 187 34.453 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDO28_RS20445 ce80abdb87804a8d6c8a669c5d525111 189 Pfam PF02669 K+-transporting ATPase, c chain 6 185 8.3E-69 T 06-07-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDO28_RS17080 7569e49b1ec46a4639566aa70bcf2301 444 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 19 63 4.8E-8 T 06-07-2017 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal CDO28_RS17080 7569e49b1ec46a4639566aa70bcf2301 444 SUPERFAMILY SSF51126 249 407 4.47E-5 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS20995 2efd30dd6ad73ee2baedaec07ee6be23 149 SUPERFAMILY SSF51316 9 139 7.64E-36 T 06-07-2017 IPR011057 Mss4-like CDO28_RS20995 2efd30dd6ad73ee2baedaec07ee6be23 149 Gene3D G3DSA:3.90.1590.10 7 140 8.3E-35 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS20995 2efd30dd6ad73ee2baedaec07ee6be23 149 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 31 120 3.8E-21 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS29305 adc98d310fed8a3113cf6e2eebec3768 62 Pfam PF11450 Protein of unknwon function (DUF3008) 3 59 8.4E-29 T 06-07-2017 IPR021553 Protein of unknwon function DUF3008 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00412 Epoxide hydrolase signature 46 61 2.8E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00412 Epoxide hydrolase signature 209 225 2.8E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00412 Epoxide hydrolase signature 105 118 2.8E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 1.6E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 1.6E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 1.6E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 211 225 1.6E-7 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 Gene3D G3DSA:3.40.50.1820 4 242 3.3E-39 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 Pfam PF12146 Serine aminopeptidase, S33 24 237 4.6E-15 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS11380 6333e0e63d648e749d0f0c49e9755c41 269 SUPERFAMILY SSF53474 5 243 1.28E-39 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 6.6E-20 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 4.0E-25 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.621 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 Pfam PF01649 Ribosomal protein S20 2 84 1.6E-24 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 SUPERFAMILY SSF46992 3 86 2.35E-26 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08715 e6af5af20b62d310b7dc8cfeb89534dc 88 Gene3D G3DSA:1.20.58.110 1 86 3.5E-27 T 06-07-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13180 6623948f408cf8b993b21f864bc41b85 41 Pfam PF00444 Ribosomal protein L36 1 41 1.4E-16 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS13180 6623948f408cf8b993b21f864bc41b85 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.034 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS13180 6623948f408cf8b993b21f864bc41b85 41 SUPERFAMILY SSF57840 1 41 1.96E-12 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS13180 6623948f408cf8b993b21f864bc41b85 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS13180 6623948f408cf8b993b21f864bc41b85 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.1E-5 T 06-07-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 SUPERFAMILY SSF55326 7 161 2.99E-38 T 06-07-2017 CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 316 1.3E-126 T 06-07-2017 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 SUPERFAMILY SSF56042 164 339 2.09E-43 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 4.3E-19 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 342 4.1E-22 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 PIRSF PIRSF036407 2 349 1.5E-114 T 06-07-2017 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 Gene3D G3DSA:3.90.650.10 167 344 1.1E-13 T 06-07-2017 IPR010918 AIR synthase-related protein, C-terminal domain CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 Hamap MF_00625 Selenide, water dikinase [selD]. 5 348 44.082 T 06-07-2017 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CDO28_RS20770 1f3becaec9fbaa308b5d1e98380afe48 349 Gene3D G3DSA:3.30.1330.10 27 162 1.0E-28 T 06-07-2017 IPR016188 PurM-like, N-terminal domain CDO28_RS22945 eeda18a12e8fa5dc19f3c546c7515ebe 64 SUPERFAMILY SSF54862 5 58 1.19E-13 T 06-07-2017 CDO28_RS22945 eeda18a12e8fa5dc19f3c546c7515ebe 64 Pfam PF12838 4Fe-4S dicluster domain 9 57 4.8E-7 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS22945 eeda18a12e8fa5dc19f3c546c7515ebe 64 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS22945 eeda18a12e8fa5dc19f3c546c7515ebe 64 Gene3D G3DSA:3.30.70.20 5 58 1.9E-13 T 06-07-2017 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 SUPERFAMILY SSF141130 8 313 2.48E-91 T 06-07-2017 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 Gene3D G3DSA:3.10.28.20 225 313 1.5E-23 T 06-07-2017 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 Gene3D G3DSA:2.60.120.580 136 222 8.4E-60 T 06-07-2017 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 Gene3D G3DSA:2.60.120.580 9 88 8.4E-60 T 06-07-2017 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 Pfam PF03069 Acetamidase/Formamidase family 12 151 2.1E-22 T 06-07-2017 IPR004304 Acetamidase/Formamidase GO:0016811 CDO28_RS17615 2a7c134ee331aaf99a730100a647d4c2 314 Pfam PF03069 Acetamidase/Formamidase family 156 313 7.7E-37 T 06-07-2017 IPR004304 Acetamidase/Formamidase GO:0016811 CDO28_RS26600 4d8de369d32242525c67654e6eb223ce 395 Gene3D G3DSA:3.40.50.2000 190 353 9.5E-23 T 06-07-2017 CDO28_RS26600 4d8de369d32242525c67654e6eb223ce 395 SUPERFAMILY SSF53756 5 354 4.0E-22 T 06-07-2017 CDO28_RS26600 4d8de369d32242525c67654e6eb223ce 395 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 217 351 8.7E-10 T 06-07-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CDO28_RS08700 88ae07ec163899021eb7f1dc5959888d 124 Gene3D G3DSA:3.30.70.1060 1 116 4.2E-32 T 06-07-2017 CDO28_RS08700 88ae07ec163899021eb7f1dc5959888d 124 Pfam PF03795 YCII-related domain 1 114 2.3E-23 T 06-07-2017 IPR005545 YCII-related CDO28_RS08700 88ae07ec163899021eb7f1dc5959888d 124 SUPERFAMILY SSF54909 1 118 2.09E-31 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS03175 edb6c10f10a5e3293187c6bd8620dee5 279 Pfam PF00793 DAHP synthetase I family 13 267 1.4E-66 T 06-07-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDO28_RS03175 edb6c10f10a5e3293187c6bd8620dee5 279 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 23 278 7.2E-122 T 06-07-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDO28_RS03175 edb6c10f10a5e3293187c6bd8620dee5 279 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 18 279 51.931 T 06-07-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDO28_RS03175 edb6c10f10a5e3293187c6bd8620dee5 279 SUPERFAMILY SSF51569 14 278 8.15E-103 T 06-07-2017 CDO28_RS03175 edb6c10f10a5e3293187c6bd8620dee5 279 Gene3D G3DSA:3.20.20.70 22 278 2.2E-111 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 SUPERFAMILY SSF46689 209 250 4.94E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 SUPERFAMILY SSF46689 258 309 2.51E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 Pfam PF14525 AraC-binding-like domain 19 190 1.8E-15 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 Gene3D G3DSA:1.10.10.60 259 310 1.0E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 Gene3D G3DSA:1.10.10.60 208 258 1.7E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 SMART SM00342 224 307 7.9E-16 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 Pfam PF12833 Helix-turn-helix domain 230 308 1.3E-16 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS00300 d4e8edea77e6fea157a5d40b6fce8a5c 338 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 259 303 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 SUPERFAMILY SSF51735 2 231 1.89E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 Gene3D G3DSA:3.40.50.720 2 230 3.6E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 8.2E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 8.2E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 8.2E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 8.2E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 8.2E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 185 9.7E-4 T 06-07-2017 CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 Pfam PF00106 short chain dehydrogenase 3 193 2.2E-55 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 7.3E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 7.3E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS20525 e6a9ab5a3eb2f64d8f9d5830be5e24aa 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 7.3E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09340 f543486b5bc569913c694dfcfd24d35b 140 Pfam PF01475 Ferric uptake regulator family 16 112 1.5E-20 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CDO28_RS09340 f543486b5bc569913c694dfcfd24d35b 140 Gene3D G3DSA:1.10.10.10 9 88 1.3E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09340 f543486b5bc569913c694dfcfd24d35b 140 SUPERFAMILY SSF46785 9 133 2.87E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 SMART SM00829 14 338 1.4E-19 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 154 175 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 Gene3D G3DSA:3.90.180.10 3 159 3.9E-46 T 06-07-2017 IPR011032 GroES-like CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 95 2.2E-8 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 Gene3D G3DSA:3.40.50.720 160 251 4.4E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 Pfam PF13602 Zinc-binding dehydrogenase 197 338 7.1E-22 T 06-07-2017 CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 SUPERFAMILY SSF50129 3 158 9.74E-38 T 06-07-2017 IPR011032 GroES-like CDO28_RS23855 9cee3cb2abb60da4aa68343eaddcb994 340 SUPERFAMILY SSF51735 126 282 1.29E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 SUPERFAMILY SSF52016 421 608 9.42E-62 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 Pfam PF00920 Dehydratase family 34 605 3.7E-224 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 SUPERFAMILY SSF143975 4 420 1.83E-138 T 06-07-2017 CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 608 1.9E-256 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 608 45.737 T 06-07-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS12980 086bb78e69755770a722a26b34489dee 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 340 2.9E-48 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 Gene3D G3DSA:3.20.20.70 2 379 1.0E-98 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 SUPERFAMILY SSF51395 1 371 4.23E-91 T 06-07-2017 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 Pfam PF13450 NAD(P)-binding Rossmann-like domain 390 425 3.7E-6 T 06-07-2017 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 Gene3D G3DSA:3.40.50.720 384 539 3.9E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 SUPERFAMILY SSF51905 363 675 1.62E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 471 485 6.7E-6 T 06-07-2017 CDO28_RS27785 d3435db4b87c0fe3c0187f76c9da8280 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 387 412 6.7E-6 T 06-07-2017 CDO28_RS28955 e547b0c29ebf348a0e33b1dfbe8a0371 353 Gene3D G3DSA:3.40.50.2300 63 180 9.9E-16 T 06-07-2017 CDO28_RS28955 e547b0c29ebf348a0e33b1dfbe8a0371 353 SUPERFAMILY SSF53822 63 348 4.87E-42 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28955 e547b0c29ebf348a0e33b1dfbe8a0371 353 Gene3D G3DSA:3.40.50.2300 200 346 1.1E-13 T 06-07-2017 CDO28_RS28955 e547b0c29ebf348a0e33b1dfbe8a0371 353 Pfam PF13407 Periplasmic binding protein domain 75 325 6.9E-18 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 SMART SM00418 17 95 9.1E-29 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 Pfam PF01022 Bacterial regulatory protein, arsR family 24 69 1.2E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 SUPERFAMILY SSF46785 6 97 1.62E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 Gene3D G3DSA:1.10.10.10 7 98 9.8E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 3.5E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 3.5E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS15195 568cbe00ff5e5aa9d097a31f7d04c872 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 3.5E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS15670 7b7651ad63c28336f4050d5e776331e1 117 SUPERFAMILY SSF54909 1 116 1.77E-48 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS15670 7b7651ad63c28336f4050d5e776331e1 117 Pfam PF07237 Protein of unknown function (DUF1428) 3 103 4.3E-44 T 06-07-2017 IPR009874 Protein of unknown function DUF1428 CDO28_RS15670 7b7651ad63c28336f4050d5e776331e1 117 PIRSF PIRSF007028 1 117 7.9E-58 T 06-07-2017 IPR009874 Protein of unknown function DUF1428 CDO28_RS15670 7b7651ad63c28336f4050d5e776331e1 117 Gene3D G3DSA:3.30.70.900 1 116 2.0E-52 T 06-07-2017 CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 SUPERFAMILY SSF52540 10 249 2.18E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 SUPERFAMILY SSF50331 242 360 8.02E-26 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Pfam PF08402 TOBE domain 282 349 1.5E-11 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Pfam PF00005 ABC transporter 26 167 5.4E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Gene3D G3DSA:2.40.50.100 245 286 8.8E-7 T 06-07-2017 CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Gene3D G3DSA:2.40.50.100 347 361 8.8E-7 T 06-07-2017 CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Gene3D G3DSA:2.40.50.140 287 345 2.4E-11 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 SMART SM00382 34 217 8.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 Gene3D G3DSA:3.40.50.300 7 240 1.7E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30420 4d0ca9e781f5ca88ac2c72fe0ce9ecd8 361 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 Pfam PF00271 Helicase conserved C-terminal domain 169 271 1.2E-8 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 SUPERFAMILY SSF52540 140 398 6.92E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 SUPERFAMILY SSF52540 11 137 6.63E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 Gene3D G3DSA:3.40.50.300 168 277 8.1E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 SMART SM00490 183 272 3.4E-12 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS11035 8d8f45bb0192472d0e1c3e015ef19c3c 1028 Gene3D G3DSA:3.40.50.300 13 135 2.5E-4 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16255 785c26f07ec0b13dcc18b2e2b5c34eaf 255 Gene3D G3DSA:3.90.730.10 44 248 6.0E-26 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS16255 785c26f07ec0b13dcc18b2e2b5c34eaf 255 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 77 84 - T 06-07-2017 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 CDO28_RS16255 785c26f07ec0b13dcc18b2e2b5c34eaf 255 Pfam PF00445 Ribonuclease T2 family 45 208 1.3E-11 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS16255 785c26f07ec0b13dcc18b2e2b5c34eaf 255 SUPERFAMILY SSF55895 40 226 8.5E-25 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS24595 e8f152f96e8b7bca875dc8909cfbc8fe 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 211 3.3E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24595 e8f152f96e8b7bca875dc8909cfbc8fe 220 SUPERFAMILY SSF161098 15 200 2.75E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24595 e8f152f96e8b7bca875dc8909cfbc8fe 220 Gene3D G3DSA:1.10.3720.10 15 202 2.4E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25975 da3c91ca7b7c47007a45edf32e6d0a5e 147 SUPERFAMILY SSF51316 4 142 2.09E-61 T 06-07-2017 IPR011057 Mss4-like CDO28_RS25975 da3c91ca7b7c47007a45edf32e6d0a5e 147 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 4 129 38.941 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25975 da3c91ca7b7c47007a45edf32e6d0a5e 147 Pfam PF01641 SelR domain 11 128 6.4E-51 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25975 da3c91ca7b7c47007a45edf32e6d0a5e 147 Gene3D G3DSA:2.170.150.20 5 144 8.4E-63 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS25975 da3c91ca7b7c47007a45edf32e6d0a5e 147 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 7 137 3.5E-63 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Gene3D G3DSA:1.10.540.10 1 118 5.9E-31 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 380 3.5E-49 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 6.8E-25 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 SUPERFAMILY SSF56645 1 242 4.58E-68 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 SUPERFAMILY SSF47203 230 382 4.35E-56 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 4.8E-25 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Gene3D G3DSA:2.40.110.10 121 221 1.3E-33 T 06-07-2017 CDO28_RS16000 567c253d5f2678542dbe3d44db1a1753 386 Gene3D G3DSA:1.20.140.10 222 382 4.0E-64 T 06-07-2017 CDO28_RS22360 e465c873c0017b9c5df70656f95e21c5 253 Gene3D G3DSA:3.40.50.10330 10 107 4.6E-9 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS22360 e465c873c0017b9c5df70656f95e21c5 253 SUPERFAMILY SSF111331 26 214 5.89E-29 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain CDO28_RS22360 e465c873c0017b9c5df70656f95e21c5 253 Pfam PF01513 ATP-NAD kinase 29 208 1.3E-8 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS22360 e465c873c0017b9c5df70656f95e21c5 253 Gene3D G3DSA:2.60.200.30 108 210 8.2E-17 T 06-07-2017 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.1E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 Gene3D G3DSA:3.40.50.720 6 250 4.2E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.7E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.7E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.7E-16 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 SUPERFAMILY SSF51735 7 251 6.02E-87 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00855 6d14e852352a4ec6490ade560cd2e20c 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 248 3.7E-73 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:1.10.150.20 192 253 3.1E-27 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SMART SM00475 5 268 2.1E-121 T 06-07-2017 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SUPERFAMILY SSF53098 382 589 6.41E-44 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SUPERFAMILY SSF47807 177 292 3.14E-31 T 06-07-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:3.40.50.1010 6 191 1.3E-67 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 802 815 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 947 960 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 750 765 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 772 795 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 917 933 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 727 749 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 863 874 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 885 896 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 PRINTS PR00868 DNA-polymerase family A (pol I) signature 826 851 3.2E-76 T 06-07-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:1.20.1060.10 614 735 3.9E-32 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Pfam PF00476 DNA polymerase family A 622 1002 1.5E-145 T 06-07-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 177 270 2.1E-31 T 06-07-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:1.10.150.20 784 889 1.8E-32 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SUPERFAMILY SSF88723 5 176 4.25E-52 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 ProSitePatterns PS00447 DNA polymerase family A signature. 826 845 - T 06-07-2017 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 TIGRFAM TIGR00593 pola: DNA polymerase I 7 1004 5.9E-279 T 06-07-2017 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SMART SM00482 758 964 2.5E-120 T 06-07-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SMART SM00279 179 214 1.9E-15 T 06-07-2017 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SUPERFAMILY SSF56672 593 1004 2.33E-149 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 176 6.4E-54 T 06-07-2017 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:3.30.70.370 736 783 1.8E-63 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:3.30.70.370 890 1004 1.8E-63 T 06-07-2017 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Gene3D G3DSA:3.30.420.10 386 613 2.4E-71 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SMART SM00474 386 589 2.6E-30 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 SMART SM00479 406 590 0.0039 T 06-07-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III CDO28_RS09730 422c27c593c07549175c402fadafd65d 1004 Pfam PF01612 3'-5' exonuclease 386 588 1.0E-28 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Pfam PF00364 Biotin-requiring enzyme 606 668 1.7E-14 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Pfam PF00289 Biotin carboxylase, N-terminal domain 4 113 2.3E-45 T 06-07-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Gene3D G3DSA:3.30.1490.20 133 205 1.3E-30 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Gene3D G3DSA:3.40.50.20 4 131 1.8E-52 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 1.5E-82 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Gene3D G3DSA:2.40.50.100 594 670 1.8E-20 T 06-07-2017 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Gene3D G3DSA:3.30.470.20 207 454 1.6E-96 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 626 643 - T 06-07-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 SUPERFAMILY SSF51230 592 670 7.59E-18 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 SUPERFAMILY SSF52440 3 116 1.44E-49 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 SMART SM00878 339 451 3.3E-53 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 SUPERFAMILY SSF56059 86 351 9.02E-72 T 06-07-2017 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 Pfam PF02785 Biotin carboxylase C-terminal domain 339 451 8.0E-34 T 06-07-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS30005 20b492161ff8480bc32109a68c5d65bf 670 SUPERFAMILY SSF51246 334 453 5.13E-37 T 06-07-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS23435 85f15f3d5a8e4f7feb3100f69392a43e 86 SUPERFAMILY SSF47413 10 75 5.63E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS23435 85f15f3d5a8e4f7feb3100f69392a43e 86 Pfam PF01381 Helix-turn-helix 17 62 2.7E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS23435 85f15f3d5a8e4f7feb3100f69392a43e 86 Gene3D G3DSA:1.10.260.40 8 77 7.2E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 SUPERFAMILY SSF46785 18 88 1.02E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 SMART SM00345 26 85 8.1E-22 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 Gene3D G3DSA:3.40.1410.10 81 250 9.4E-43 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 SUPERFAMILY SSF64288 73 250 9.42E-46 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.2E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.2E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 SMART SM00866 108 244 5.6E-34 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 Gene3D G3DSA:1.10.10.10 19 80 2.6E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 Pfam PF07702 UTRA domain 109 244 1.7E-35 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS09600 dea67aae0a7372c2ff8d4c931e100eaa 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 85 1.2E-20 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10675 37891b666945424c047834077f7ac396 343 Pfam PF06144 DNA polymerase III, delta subunit 24 191 2.4E-9 T 06-07-2017 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 CDO28_RS10675 37891b666945424c047834077f7ac396 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 21 334 1.8E-53 T 06-07-2017 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 CDO28_RS10675 37891b666945424c047834077f7ac396 343 Gene3D G3DSA:1.10.8.60 148 226 2.7E-14 T 06-07-2017 CDO28_RS10675 37891b666945424c047834077f7ac396 343 Gene3D G3DSA:1.20.272.20 227 309 4.4E-4 T 06-07-2017 CDO28_RS10675 37891b666945424c047834077f7ac396 343 SUPERFAMILY SSF52540 17 211 8.63E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10675 37891b666945424c047834077f7ac396 343 SUPERFAMILY SSF48019 215 335 7.48E-18 T 06-07-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 45 62 - T 06-07-2017 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 Gene3D G3DSA:2.40.100.10 6 153 1.7E-44 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 PIRSF PIRSF001467 6 168 1.9E-27 T 06-07-2017 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 50 62 1.2E-11 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 1.2E-11 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 1.2E-11 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 1.2E-11 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 165 1.4E-45 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02255 bff27252336b750fcea1ebb1bd7c56ea 169 SUPERFAMILY SSF50891 10 167 2.05E-46 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 SUPERFAMILY SSF53474 4 299 1.39E-61 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 Gene3D G3DSA:3.40.50.1820 10 301 3.4E-69 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 PIRSF PIRSF006431 3 319 6.1E-135 T 06-07-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 Pfam PF00561 alpha/beta hydrolase fold 42 298 5.6E-25 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 13 314 1.8E-120 T 06-07-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 110 124 8.4E-14 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 67 78 8.4E-14 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS04930 005158dc42303ddad9f23c6ee3981822 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 41 49 8.4E-14 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS19545 2995447c989d318ae55f8b1cd02ecc74 152 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 85 131 3.9E-12 T 06-07-2017 IPR010093 SinI-like, DNA-binding domain GO:0003677 CDO28_RS19545 2995447c989d318ae55f8b1cd02ecc74 152 Pfam PF12728 Helix-turn-helix domain 84 133 3.4E-9 T 06-07-2017 CDO28_RS19265 2995447c989d318ae55f8b1cd02ecc74 152 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 85 131 3.9E-12 T 06-07-2017 IPR010093 SinI-like, DNA-binding domain GO:0003677 CDO28_RS19265 2995447c989d318ae55f8b1cd02ecc74 152 Pfam PF12728 Helix-turn-helix domain 84 133 3.4E-9 T 06-07-2017 CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 Gene3D G3DSA:3.10.580.10 249 364 1.5E-23 T 06-07-2017 CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 Pfam PF00571 CBS domain 317 363 1.5E-6 T 06-07-2017 IPR000644 CBS domain CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 Pfam PF00571 CBS domain 253 304 3.1E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 Pfam PF04982 HPP family 64 184 1.3E-38 T 06-07-2017 IPR007065 HPP CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 SUPERFAMILY SSF54631 240 364 2.62E-24 T 06-07-2017 CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 SMART SM00116 315 363 1.5 T 06-07-2017 IPR000644 CBS domain CDO28_RS10205 980793b1f9d526839c3f71a515075058 382 SMART SM00116 259 307 3.8E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Gene3D G3DSA:3.40.50.300 154 336 3.9E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 606 37.724 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 108 599 1.2E-236 T 06-07-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 SUPERFAMILY SSF140990 409 603 1.11E-73 T 06-07-2017 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 SMART SM00382 190 329 8.1E-26 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Pfam PF06480 FtsH Extracellular 10 96 2.1E-11 T 06-07-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 SUPERFAMILY SSF52540 149 397 1.73E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Gene3D G3DSA:1.10.8.60 337 402 1.1E-28 T 06-07-2017 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 194 326 7.0E-46 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS13445 c75ac1de5ecd62033e451556dd9d2f7a 645 Pfam PF01434 Peptidase family M41 387 598 3.1E-80 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 CDO28_RS00800 e7e84dcd741be60bb8e7660f14542f24 499 SUPERFAMILY SSF53383 44 465 7.29E-73 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS00800 e7e84dcd741be60bb8e7660f14542f24 499 Gene3D G3DSA:3.90.1150.10 315 466 2.7E-19 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS00800 e7e84dcd741be60bb8e7660f14542f24 499 Pfam PF00266 Aminotransferase class-V 69 414 3.8E-44 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS00800 e7e84dcd741be60bb8e7660f14542f24 499 Gene3D G3DSA:3.40.640.10 66 314 4.7E-64 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS12195 c4afca52e6fa730af2e943718b5120b3 262 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 256 3.2E-6 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDO28_RS12195 c4afca52e6fa730af2e943718b5120b3 262 SUPERFAMILY SSF52540 15 256 7.5E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12195 c4afca52e6fa730af2e943718b5120b3 262 Gene3D G3DSA:3.40.50.300 14 256 1.8E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12195 c4afca52e6fa730af2e943718b5120b3 262 SMART SM00382 40 249 7.4E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12195 c4afca52e6fa730af2e943718b5120b3 262 Pfam PF00005 ABC transporter 32 187 8.2E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23765 a6a66d95f4cd5ae4c63ea79897ddbcf0 243 SUPERFAMILY SSF53597 3 233 7.99E-27 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS23765 a6a66d95f4cd5ae4c63ea79897ddbcf0 243 Gene3D G3DSA:3.40.430.10 2 238 1.9E-32 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS23765 a6a66d95f4cd5ae4c63ea79897ddbcf0 243 Pfam PF01872 RibD C-terminal domain 3 227 3.9E-17 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 2 176 7.9E-49 T 06-07-2017 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 Gene3D G3DSA:3.90.1140.10 3 186 4.7E-47 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 SUPERFAMILY SSF55144 2 177 2.44E-41 T 06-07-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 Pfam PF02834 LigT like Phosphoesterase 90 168 1.8E-12 T 06-07-2017 IPR014051 Phosphoesterase, HXTX CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 Pfam PF02834 LigT like Phosphoesterase 9 85 4.2E-15 T 06-07-2017 IPR014051 Phosphoesterase, HXTX CDO28_RS11245 94ccc1ae512aa376132a97c3416a5483 195 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 176 23.693 T 06-07-2017 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CDO28_RS07640 d0960c439fba493f3d59be16c0e7bd9d 159 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 52 156 5.2E-8 T 06-07-2017 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 CDO28_RS07640 d0960c439fba493f3d59be16c0e7bd9d 159 SUPERFAMILY SSF49503 43 156 7.85E-27 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07640 d0960c439fba493f3d59be16c0e7bd9d 159 Gene3D G3DSA:2.60.40.420 30 156 2.9E-33 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS07890 8c8df251fb525748a6dd0fdee252fd1f 267 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 36 266 2.8E-79 T 06-07-2017 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane CDO28_RS07890 8c8df251fb525748a6dd0fdee252fd1f 267 TIGRFAM TIGR02186 alph_Pro_TM: conserved hypothetical protein 1 267 3.5E-131 T 06-07-2017 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 Gene3D G3DSA:3.30.572.10 1 264 1.0E-133 T 06-07-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.7E-98 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 7.4E-42 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 SUPERFAMILY SSF55831 1 264 6.8E-132 T 06-07-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 06-07-2017 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 Pfam PF00303 Thymidylate synthase 2 264 1.1E-123 T 06-07-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.8E-50 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.8E-50 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.8E-50 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.8E-50 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.8E-50 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS16655 d812d61e7bdfb4162a73fa5f12eb0810 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.002 T 06-07-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 363 4.9E-87 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 Gene3D G3DSA:3.90.1150.10 253 364 5.1E-23 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 Gene3D G3DSA:3.40.640.10 60 252 8.4E-56 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 Pfam PF00155 Aminotransferase class I and II 32 360 1.6E-49 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 365 54.545 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS13815 5491a2d01c17c02208c523d7ee86c95a 368 SUPERFAMILY SSF53383 10 364 1.36E-76 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 Pfam PF13439 Glycosyltransferase Family 4 494 662 2.9E-12 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 Pfam PF00534 Glycosyl transferases group 1 683 830 9.5E-19 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 SUPERFAMILY SSF53448 9 237 7.63E-33 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 SUPERFAMILY SSF53756 487 866 4.32E-51 T 06-07-2017 CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 Gene3D G3DSA:3.40.50.2000 679 844 4.0E-23 T 06-07-2017 CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 Gene3D G3DSA:3.90.550.10 11 242 3.1E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27215 818d96a9d5b28edcb287fbd829ac28ea 893 Pfam PF00535 Glycosyl transferase family 2 13 172 4.6E-12 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 SUPERFAMILY SSF53659 1 402 8.28E-154 T 06-07-2017 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 PIRSF PIRSF000108 1 404 3.5E-228 T 06-07-2017 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 392 5.2E-74 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 Gene3D G3DSA:3.40.718.10 3 402 1.2E-179 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 06-07-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 403 6.5E-214 T 06-07-2017 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDO28_RS00305 1847a8b3ee9f35bba9ffc63f2f33f73a 404 SMART SM01329 9 394 2.2E-135 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS25755 585711b224121e693f7c651912d274e0 113 Pfam PF00589 Phage integrase family 2 97 1.2E-12 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS25755 585711b224121e693f7c651912d274e0 113 SUPERFAMILY SSF56349 1 111 4.41E-19 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS25755 585711b224121e693f7c651912d274e0 113 Gene3D G3DSA:1.10.443.10 1 102 3.2E-16 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS25725 585711b224121e693f7c651912d274e0 113 Pfam PF00589 Phage integrase family 2 97 1.2E-12 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS25725 585711b224121e693f7c651912d274e0 113 SUPERFAMILY SSF56349 1 111 4.41E-19 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS25725 585711b224121e693f7c651912d274e0 113 Gene3D G3DSA:1.10.443.10 1 102 3.2E-16 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS11645 edbbe9ae441644a3be0fbcef86e30f76 252 Gene3D G3DSA:3.40.50.880 11 235 7.8E-49 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS11645 edbbe9ae441644a3be0fbcef86e30f76 252 Pfam PF00117 Glutamine amidotransferase class-I 56 189 1.0E-13 T 06-07-2017 IPR017926 Glutamine amidotransferase CDO28_RS11645 edbbe9ae441644a3be0fbcef86e30f76 252 SUPERFAMILY SSF52317 16 200 7.23E-37 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS32035 9381bbb2421e0f52d1cee95012fde17d 837 Pfam PF11874 Domain of unknown function (DUF3394) 645 823 6.0E-57 T 06-07-2017 IPR021814 Protein of unknown function DUF3394 CDO28_RS32035 9381bbb2421e0f52d1cee95012fde17d 837 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 5 696 5.5E-208 T 06-07-2017 IPR011853 TRAP transporter, 4TM/12TM fusion protein CDO28_RS32035 9381bbb2421e0f52d1cee95012fde17d 837 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 108 639 5.4E-73 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS02365 6bb66f1861f4da55ddbf9e0608d677f1 264 SUPERFAMILY SSF56112 7 247 1.07E-32 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS02365 6bb66f1861f4da55ddbf9e0608d677f1 264 Gene3D G3DSA:3.90.1200.10 130 198 2.0E-5 T 06-07-2017 CDO28_RS02365 6bb66f1861f4da55ddbf9e0608d677f1 264 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 9 245 2.2E-71 T 06-07-2017 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 Gene3D G3DSA:3.20.20.80 485 517 3.1E-76 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 Gene3D G3DSA:3.20.20.80 103 439 3.1E-76 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 Pfam PF00128 Alpha amylase, catalytic domain 131 221 7.6E-13 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 Pfam PF00128 Alpha amylase, catalytic domain 234 439 3.2E-6 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 SMART SM00642 120 460 3.6E-9 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 PIRSF PIRSF006337 10 599 3.7E-216 T 06-07-2017 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 SUPERFAMILY SSF51445 95 519 1.51E-101 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 SUPERFAMILY SSF81296 9 98 9.0E-18 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 24 567 3.6E-216 T 06-07-2017 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902 CDO28_RS29095 5113c473a7c02ffea312feb1b5ad51cd 601 Gene3D G3DSA:2.60.40.10 15 98 2.7E-23 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 Gene3D G3DSA:1.10.1040.10 167 288 9.3E-40 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 Gene3D G3DSA:3.40.50.720 1 165 2.6E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 SUPERFAMILY SSF48179 165 288 6.46E-40 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 SUPERFAMILY SSF51735 2 165 7.19E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 285 2.1E-33 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 8.7E-47 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS18715 66017154580c58ca0eac579e635b599d 289 PIRSF PIRSF000103 1 289 4.0E-69 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 145 159 - T 06-07-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 SUPERFAMILY SSF55174 23 77 1.19E-10 T 06-07-2017 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 21 339 1.5E-89 T 06-07-2017 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 Pfam PF00849 RNA pseudouridylate synthase 98 267 3.0E-33 T 06-07-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 Gene3D G3DSA:3.10.290.10 24 73 2.6E-13 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 SMART SM00363 23 89 7.0E-7 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 Pfam PF01479 S4 domain 24 69 8.0E-9 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS13495 fff8fd4810b74b448ad9cbc72a4e3b89 343 SUPERFAMILY SSF55120 85 339 3.5E-72 T 06-07-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDO28_RS33615 df6b28060be4a38672f7b8aa7b3d736b 194 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 9 182 1.9E-61 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS33615 df6b28060be4a38672f7b8aa7b3d736b 194 SUPERFAMILY SSF51182 6 184 8.9E-70 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS33615 df6b28060be4a38672f7b8aa7b3d736b 194 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 10 179 1.5E-65 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS33615 df6b28060be4a38672f7b8aa7b3d736b 194 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 6 185 4.0E-68 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS33615 df6b28060be4a38672f7b8aa7b3d736b 194 Gene3D G3DSA:2.60.120.10 7 183 5.2E-72 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS12540 105438701de70b2ea1f20c981033d8d6 161 Pfam PF01899 Na+/H+ ion antiporter subunit 12 158 3.3E-34 T 06-07-2017 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDO28_RS12540 105438701de70b2ea1f20c981033d8d6 161 PIRSF PIRSF019239 1 161 2.8E-35 T 06-07-2017 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDO28_RS12540 105438701de70b2ea1f20c981033d8d6 161 TIGRFAM TIGR00942 2a6301s05: multicomponent Na+:H+ antiporter 18 161 5.0E-67 T 06-07-2017 IPR004847 Na(+)/H(+) antiporter subunit E1 GO:0015297|GO:0015992|GO:0016021 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 Pfam PF01965 DJ-1/PfpI family 76 181 1.8E-12 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 SUPERFAMILY SSF52317 9 200 3.19E-34 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 SUPERFAMILY SSF46689 272 323 8.96E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 SMART SM00342 236 319 1.5E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 Gene3D G3DSA:1.10.10.60 274 323 1.0E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 SUPERFAMILY SSF46689 219 270 1.61E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 Pfam PF12833 Helix-turn-helix domain 242 321 8.8E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 Gene3D G3DSA:1.10.10.60 225 273 7.6E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25260 d97b1bf96bf0001d4ea8012df8ca9584 331 Gene3D G3DSA:3.40.50.880 9 224 3.5E-50 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 142 373 1.3E-52 T 06-07-2017 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 SMART SM00228 121 200 2.6E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 Gene3D G3DSA:2.30.42.10 109 210 3.6E-23 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 SUPERFAMILY SSF50156 103 209 8.28E-16 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 Pfam PF02163 Peptidase family M50 14 360 5.8E-81 T 06-07-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 CDO28_RS02865 3421aff643743892f4a35e405ec695e6 374 Pfam PF13180 PDZ domain 145 201 5.8E-7 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 61 74 - T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 Gene3D G3DSA:3.20.20.20 15 278 1.8E-98 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 27 42 - T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 Pfam PF00809 Pterin binding enzyme 28 262 1.9E-77 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 SUPERFAMILY SSF51717 14 278 2.35E-90 T 06-07-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS00210 e7939a78ee6a5358031acd8c325dd225 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 27 277 1.7E-92 T 06-07-2017 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CDO28_RS11040 6648586e258f527d61e1d14068a2de62 143 SMART SM00363 13 75 1.4E-13 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS11040 6648586e258f527d61e1d14068a2de62 143 Pfam PF01479 S4 domain 13 59 3.9E-14 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS11040 6648586e258f527d61e1d14068a2de62 143 Gene3D G3DSA:3.10.290.10 11 98 1.0E-27 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS11040 6648586e258f527d61e1d14068a2de62 143 SUPERFAMILY SSF55174 11 103 9.55E-24 T 06-07-2017 CDO28_RS20500 3ad6c25a4efd343d2e69639cde75f36f 601 Pfam PF04183 IucA / IucC family 145 391 3.3E-64 T 06-07-2017 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 CDO28_RS20500 3ad6c25a4efd343d2e69639cde75f36f 601 Pfam PF06276 Ferric iron reductase FhuF-like transporter 412 574 1.5E-42 T 06-07-2017 IPR022770 Ferric iron reductase FhuF domain CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 163 - T 06-07-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 SMART SM01130 2 288 8.6E-82 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 Gene3D G3DSA:3.20.20.70 1 290 2.1E-86 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 SUPERFAMILY SSF51569 1 285 2.51E-79 T 06-07-2017 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 PIRSF PIRSF001365 1 298 2.7E-74 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 Pfam PF00701 Dihydrodipicolinate synthetase family 3 284 5.2E-72 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 Hamap MF_01237 N-acetylneuraminate lyase [nanA]. 3 289 47.791 T 06-07-2017 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 2.7E-19 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 2.7E-19 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 2.7E-19 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32075 8ea2cbb60eb943eca78e6b6307b465ea 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 2.7E-19 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS21375 29861c898d6f7bc483c03ad616b6daab 463 Gene3D G3DSA:3.40.50.2000 1 242 8.2E-69 T 06-07-2017 CDO28_RS21375 29861c898d6f7bc483c03ad616b6daab 463 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 456 1.6E-186 T 06-07-2017 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 CDO28_RS21375 29861c898d6f7bc483c03ad616b6daab 463 Pfam PF00982 Glycosyltransferase family 20 21 456 1.2E-146 T 06-07-2017 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 CDO28_RS21375 29861c898d6f7bc483c03ad616b6daab 463 Gene3D G3DSA:3.40.50.2000 243 440 1.2E-74 T 06-07-2017 CDO28_RS21375 29861c898d6f7bc483c03ad616b6daab 463 SUPERFAMILY SSF53756 2 456 6.91E-150 T 06-07-2017 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 Gene3D G3DSA:1.10.760.10 33 135 9.7E-41 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 Pfam PF00034 Cytochrome c 37 134 3.3E-8 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 44 51 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 90 106 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 109 119 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 57 72 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 73 83 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 PRINTS PR00604 Class IA and IB cytochrome C signature 126 134 1.1E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS31470 e602988cb6d301490ca28ec8c5cf64e8 136 SUPERFAMILY SSF46626 33 135 5.08E-34 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 Gene3D G3DSA:3.40.50.720 10 255 1.0E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 1.5E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 3.9E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 3.9E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 3.9E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 SUPERFAMILY SSF51735 13 255 7.09E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 255 7.7E-62 T 06-07-2017 CDO28_RS06460 54f15935d335617fc470f6c3c86c1b3a 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 154 0.0065 T 06-07-2017 CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 SUPERFAMILY SSF50331 241 350 6.8E-5 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 Pfam PF00005 ABC transporter 18 164 1.9E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 SUPERFAMILY SSF52540 3 245 2.79E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 Pfam PF12857 TOBE-like domain 285 339 6.0E-10 T 06-07-2017 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 Gene3D G3DSA:3.40.50.300 4 241 8.1E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 SMART SM00382 27 214 1.5E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26300 ba6de9dbe44ca418e889a995982db2e7 367 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 4 243 3.0E-114 T 06-07-2017 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 Gene3D G3DSA:3.90.550.10 116 354 2.7E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 PRINTS PR01439 Cellulose synthase subunit A signature 206 230 4.3E-5 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 PRINTS PR01439 Cellulose synthase subunit A signature 366 392 4.3E-5 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 PRINTS PR01439 Cellulose synthase subunit A signature 33 53 4.3E-5 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 PRINTS PR01439 Cellulose synthase subunit A signature 508 529 4.3E-5 T 06-07-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 SUPERFAMILY SSF53448 101 387 1.88E-49 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS32545 395e6ae8405ee239a82f6f62396a1e88 664 Pfam PF13641 Glycosyltransferase like family 2 116 340 8.8E-31 T 06-07-2017 CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 444 2.6E-183 T 06-07-2017 IPR010232 Probable protein kinase UbiB GO:0006744 CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 SUPERFAMILY SSF56112 196 435 3.89E-39 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 SUPERFAMILY SSF56112 96 161 3.89E-39 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 Pfam PF03109 ABC1 family 114 233 1.5E-28 T 06-07-2017 IPR004147 UbiB domain CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 Gene3D G3DSA:3.90.1200.10 60 68 2.5E-6 T 06-07-2017 CDO28_RS08735 4b75864673cfc164c5fb178a962faa5f 524 Gene3D G3DSA:3.90.1200.10 252 313 2.5E-6 T 06-07-2017 CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 SUPERFAMILY SSF51735 15 253 4.37E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 191 4.8E-4 T 06-07-2017 CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 2.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 252 2.6E-63 T 06-07-2017 CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 Gene3D G3DSA:3.40.50.720 9 253 2.2E-85 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 2.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 2.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14405 0e535cf4f91bb24d0f054f9e7c704131 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 2.7E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 SUPERFAMILY SSF53850 94 300 7.42E-40 T 06-07-2017 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 6.9E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.4E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.4E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.4E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 Gene3D G3DSA:3.40.190.10 87 177 1.9E-10 T 06-07-2017 CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 Pfam PF03466 LysR substrate binding domain 92 296 4.5E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 Gene3D G3DSA:1.10.10.10 6 86 3.1E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 SUPERFAMILY SSF46785 6 114 7.75E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12520 115057c7c90dea89b1af4bf479c298b5 310 Gene3D G3DSA:3.40.190.10 178 265 1.9E-17 T 06-07-2017 CDO28_RS10900 0d0ae174e278b6ea9732a32d570e86de 410 Gene3D G3DSA:3.40.640.10 55 285 4.9E-72 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS10900 0d0ae174e278b6ea9732a32d570e86de 410 Gene3D G3DSA:3.90.1150.10 286 409 2.4E-47 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS10900 0d0ae174e278b6ea9732a32d570e86de 410 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS10900 0d0ae174e278b6ea9732a32d570e86de 410 SUPERFAMILY SSF53383 15 408 1.08E-112 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS10900 0d0ae174e278b6ea9732a32d570e86de 410 Pfam PF00155 Aminotransferase class I and II 42 402 1.2E-81 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS21175 3f801dc2960913403e590df7e470de10 261 SUPERFAMILY SSF53335 6 211 1.72E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21175 3f801dc2960913403e590df7e470de10 261 Pfam PF13649 Methyltransferase domain 32 126 7.1E-21 T 06-07-2017 CDO28_RS21175 3f801dc2960913403e590df7e470de10 261 Gene3D G3DSA:3.40.50.150 6 193 2.9E-36 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS00760 97f88caaa9d631f6142daaec4028968b 221 Pfam PF06041 Bacterial protein of unknown function (DUF924) 50 218 3.7E-54 T 06-07-2017 IPR010323 Protein of unknown function DUF924 CDO28_RS00760 97f88caaa9d631f6142daaec4028968b 221 Gene3D G3DSA:1.20.58.320 45 121 1.3E-32 T 06-07-2017 CDO28_RS00760 97f88caaa9d631f6142daaec4028968b 221 SUPERFAMILY SSF48452 47 217 1.59E-60 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS00760 97f88caaa9d631f6142daaec4028968b 221 Gene3D G3DSA:1.25.40.10 123 220 1.5E-33 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS18745 b765077c8d6a7e0dbb8073950ead2af4 267 Gene3D G3DSA:1.10.3720.10 47 261 3.3E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18745 b765077c8d6a7e0dbb8073950ead2af4 267 SUPERFAMILY SSF161098 47 246 1.7E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18745 b765077c8d6a7e0dbb8073950ead2af4 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 255 3.3E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18745 b765077c8d6a7e0dbb8073950ead2af4 267 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 49 153 1.8E-14 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 Pfam PF00202 Aminotransferase class-III 28 438 1.1E-115 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 SUPERFAMILY SSF53383 15 439 1.48E-123 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 Gene3D G3DSA:3.40.640.10 65 342 1.7E-85 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 PIRSF PIRSF000521 35 441 7.6E-29 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 Gene3D G3DSA:3.90.1150.10 11 64 5.4E-45 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS15185 379ef687c7c7f035937b7653cd5c1d64 442 Gene3D G3DSA:3.90.1150.10 344 440 5.4E-45 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS03145 de0b374b27ae8cb6366baf2a4713ff74 213 SUPERFAMILY SSF52266 2 208 1.98E-27 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS03145 de0b374b27ae8cb6366baf2a4713ff74 213 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 6 191 4.6E-17 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS03145 de0b374b27ae8cb6366baf2a4713ff74 213 Gene3D G3DSA:3.40.50.1110 1 210 2.1E-57 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS30490 3e94965fa5060babb725accab19487f6 261 PIRSF PIRSF037834 5 261 5.2E-99 T 06-07-2017 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 CDO28_RS30490 3e94965fa5060babb725accab19487f6 261 Pfam PF05138 Phenylacetic acid catabolic protein 1 261 4.2E-96 T 06-07-2017 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 CDO28_RS30490 3e94965fa5060babb725accab19487f6 261 SUPERFAMILY SSF47240 13 255 1.8E-79 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS30490 3e94965fa5060babb725accab19487f6 261 Gene3D G3DSA:1.20.1260.10 12 261 3.4E-92 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS30490 3e94965fa5060babb725accab19487f6 261 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 23 261 1.2E-83 T 06-07-2017 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 91 5.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 24 43 5.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 1 15 5.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 SUPERFAMILY SSF51735 1 109 2.33E-22 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 107 2.0E-16 T 06-07-2017 CDO28_RS19210 e7636abb5ccdeafb62e70e2ea4b5492e 114 Gene3D G3DSA:3.40.50.720 1 109 7.3E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02170 2e63b607e9044db230c8b442258a8576 135 Pfam PF13936 Helix-turn-helix domain 4 47 8.2E-17 T 06-07-2017 IPR025246 Transposase IS30-like HTH domain CDO28_RS02170 2e63b607e9044db230c8b442258a8576 135 Gene3D G3DSA:1.10.10.60 7 46 1.0E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS02170 2e63b607e9044db230c8b442258a8576 135 SUPERFAMILY SSF46689 7 124 2.73E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 Gene3D G3DSA:1.10.10.10 74 144 1.8E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 SUPERFAMILY SSF46894 77 145 5.1E-17 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 100 116 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 116 128 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 86 100 6.2E-12 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 Pfam PF00196 Bacterial regulatory proteins, luxR family 85 140 2.6E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 SMART SM00421 83 140 3.6E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS22525 5c0775e1e5a211d1c5b5114fd10a8313 148 ProSitePatterns PS00622 LuxR-type HTH domain signature. 100 127 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS20985 3d15aaea5787f7ff0de2738048e8d42b 84 Gene3D G3DSA:1.10.1220.10 9 52 3.5E-8 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS20985 3d15aaea5787f7ff0de2738048e8d42b 84 SUPERFAMILY SSF47598 2 69 7.12E-22 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 Gene3D G3DSA:3.30.70.1230 430 611 8.1E-33 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 SMART SM00044 394 602 3.0E-6 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 432 609 2.0E-21 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 SMART SM01080 30 334 8.8E-42 T 06-07-2017 IPR007890 CHASE2 CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 SUPERFAMILY SSF55073 428 607 4.24E-44 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS08155 92efe9f5ec78088b92e5c4b2eee82f02 623 Pfam PF05226 CHASE2 domain 20 328 4.4E-33 T 06-07-2017 IPR007890 CHASE2 CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 Gene3D G3DSA:1.25.40.10 123 227 6.2E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 SMART SM01043 104 244 5.1E-19 T 06-07-2017 IPR005158 Bacterial transcriptional activator domain CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 SUPERFAMILY SSF46894 4 81 5.67E-8 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 Gene3D G3DSA:1.10.10.10 22 81 7.3E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 Pfam PF03704 Bacterial transcriptional activator domain 120 241 4.4E-15 T 06-07-2017 IPR005158 Bacterial transcriptional activator domain CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 SUPERFAMILY SSF48452 122 247 5.22E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS20160 f93589f1a4a78b451b44b68e321feb43 272 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 81 2.4E-5 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS04270 0262ad22cf9f5ad3e7e41bbeb883d04a 155 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 26 155 31.918 T 06-07-2017 IPR023035 Ribosomal protein S9, bacterial/plastid CDO28_RS04270 0262ad22cf9f5ad3e7e41bbeb883d04a 155 SUPERFAMILY SSF54211 30 155 6.07E-46 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS04270 0262ad22cf9f5ad3e7e41bbeb883d04a 155 ProSitePatterns PS00360 Ribosomal protein S9 signature. 94 112 - T 06-07-2017 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 CDO28_RS04270 0262ad22cf9f5ad3e7e41bbeb883d04a 155 Gene3D G3DSA:3.30.230.10 30 155 3.7E-51 T 06-07-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDO28_RS04270 0262ad22cf9f5ad3e7e41bbeb883d04a 155 Pfam PF00380 Ribosomal protein S9/S16 35 155 2.7E-46 T 06-07-2017 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 CDO28_RS06385 3d36ef9ec9317ff91265db484faf9262 385 SMART SM00729 94 319 1.6E-8 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS06385 3d36ef9ec9317ff91265db484faf9262 385 Gene3D G3DSA:3.20.20.70 96 282 4.7E-9 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS06385 3d36ef9ec9317ff91265db484faf9262 385 Pfam PF04055 Radical SAM superfamily 98 276 5.8E-16 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS06385 3d36ef9ec9317ff91265db484faf9262 385 SUPERFAMILY SSF102114 93 307 1.28E-12 T 06-07-2017 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 SMART SM00304 527 579 15.0 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 SMART SM00304 446 499 3.4E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 Pfam PF00672 HAMP domain 427 493 1.1E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 SMART SM00283 580 827 3.1E-95 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 636 826 1.3E-55 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 SUPERFAMILY SSF58104 547 828 4.84E-66 T 06-07-2017 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 Gene3D G3DSA:1.10.287.950 595 799 1.4E-54 T 06-07-2017 CDO28_RS07085 ddaf9e7ecc6cb5b0c7a9c0725aa8e394 841 SUPERFAMILY SSF158472 448 494 2.22E-8 T 06-07-2017 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 Gene3D G3DSA:2.40.50.100 20 83 1.6E-31 T 06-07-2017 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 27.946 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 Pfam PF01016 Ribosomal L27 protein 2 81 1.4E-38 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 5.2E-37 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.8E-34 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.8E-34 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.8E-34 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 06-07-2017 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 SUPERFAMILY SSF110324 2 83 3.14E-34 T 06-07-2017 CDO28_RS11570 1873642f719cce621d53dc84b037a88a 89 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 85 4.0E-20 T 06-07-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 SUPERFAMILY SSF74982 11 138 1.31E-49 T 06-07-2017 IPR023620 Small protein B CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 Pfam PF01668 SmpB protein 13 77 3.9E-29 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 72.97 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 5.0E-52 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 1.4E-56 T 06-07-2017 IPR000037 SsrA-binding protein GO:0003723 CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 06-07-2017 IPR020081 SsrA-binding protein, conserved site CDO28_RS05210 efa479aca58805d922138aadbf592d6e 159 Gene3D G3DSA:2.40.280.10 12 133 1.5E-50 T 06-07-2017 IPR023620 Small protein B CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 0.0074 T 06-07-2017 CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.1E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.1E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.2E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 SUPERFAMILY SSF51735 5 253 8.66E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 Gene3D G3DSA:3.40.50.720 2 253 5.5E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09100 4be318840a9d6d8573a917e4c9c86d77 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 251 2.6E-61 T 06-07-2017 CDO28_RS34470 adbf3c03478e202d1296facb69df4ea4 143 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 7 70 2.9E-17 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDO28_RS34470 adbf3c03478e202d1296facb69df4ea4 143 SUPERFAMILY SSF52374 5 130 3.66E-28 T 06-07-2017 CDO28_RS34470 adbf3c03478e202d1296facb69df4ea4 143 Pfam PF01467 Cytidylyltransferase-like 8 104 4.3E-18 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDO28_RS34470 adbf3c03478e202d1296facb69df4ea4 143 Gene3D G3DSA:3.40.50.620 5 131 1.8E-31 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 187 - T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 Pfam PF02629 CoA binding domain 6 105 1.2E-22 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 SMART SM00881 4 106 6.5E-31 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 Pfam PF00549 CoA-ligase 157 280 3.2E-19 T 06-07-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 298 1.2E-128 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 Gene3D G3DSA:3.40.50.720 2 125 9.1E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 Gene3D G3DSA:3.40.50.261 126 297 3.4E-70 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 SUPERFAMILY SSF51735 1 128 3.25E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 246 259 - T 06-07-2017 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 PRINTS PR01798 Succinyl-CoA synthase signature 183 201 3.6E-40 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 PRINTS PR01798 Succinyl-CoA synthase signature 214 227 3.6E-40 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 PRINTS PR01798 Succinyl-CoA synthase signature 88 105 3.6E-40 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 PRINTS PR01798 Succinyl-CoA synthase signature 250 267 3.6E-40 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 SUPERFAMILY SSF52210 129 298 2.22E-51 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS11795 5a72c063a729b58831cbfc8bd1b7938a 300 PIRSF PIRSF001553 1 300 1.7E-120 T 06-07-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 355 4.3E-118 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 Pfam PF00005 ABC transporter 25 166 2.4E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 SUPERFAMILY SSF50331 241 356 1.86E-20 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 Pfam PF08402 TOBE domain 283 356 1.3E-10 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 Gene3D G3DSA:3.40.50.300 8 239 6.7E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 SUPERFAMILY SSF52540 8 245 9.14E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 Gene3D G3DSA:2.40.50.100 296 351 5.4E-4 T 06-07-2017 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS25375 952812cc7d68e6863527deff2330044a 359 SMART SM00382 33 216 5.0E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 Pfam PF01494 FAD binding domain 5 341 7.7E-84 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 SUPERFAMILY SSF51905 6 165 1.1E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 SUPERFAMILY SSF51905 263 356 1.1E-61 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 Gene3D G3DSA:3.50.50.60 5 170 5.3E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 Gene3D G3DSA:3.50.50.60 264 344 5.3E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 327 343 4.7E-47 T 06-07-2017 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 327 4.7E-47 T 06-07-2017 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 4.7E-47 T 06-07-2017 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 4.7E-47 T 06-07-2017 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 4.7E-47 T 06-07-2017 CDO28_RS19070 6dc1e1d014d27fa3147cfcbc1836083f 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 4.7E-47 T 06-07-2017 CDO28_RS17875 9363945b00bc8947d7b85a82f5650518 302 SUPERFAMILY SSF51569 1 289 1.78E-74 T 06-07-2017 CDO28_RS17875 9363945b00bc8947d7b85a82f5650518 302 SMART SM01130 3 291 3.5E-74 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS17875 9363945b00bc8947d7b85a82f5650518 302 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 3.4E-47 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS17875 9363945b00bc8947d7b85a82f5650518 302 Gene3D G3DSA:3.20.20.70 1 289 3.8E-76 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS17875 9363945b00bc8947d7b85a82f5650518 302 PIRSF PIRSF001365 1 302 2.1E-67 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS16610 1006b93a0c7d21f7a029549e11c70443 80 Pfam PF13467 Ribbon-helix-helix domain 7 69 5.7E-24 T 06-07-2017 IPR027373 Ribbon-helix-helix domain CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Pfam PF03853 YjeF-related protein N-terminus 31 187 9.1E-40 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Gene3D G3DSA:3.40.1190.20 231 488 1.5E-67 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 436 446 - T 06-07-2017 IPR017953 Carbohydrate kinase, predicted, conserved site CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 SUPERFAMILY SSF64153 9 245 7.59E-57 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 11 208 23.08 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 PIRSF PIRSF017184 7 492 1.6E-106 T 06-07-2017 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 223 492 16.698 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Gene3D G3DSA:3.40.50.10260 9 230 9.9E-62 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 231 483 8.2E-48 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 SUPERFAMILY SSF53613 225 487 1.4E-54 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 Pfam PF01256 Carbohydrate kinase 247 479 9.7E-45 T 06-07-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDO28_RS01175 6b7241a9ff9af8bfb4da554765c8b3aa 494 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 8 208 9.7E-43 T 06-07-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 Pfam PF04962 KduI/IolB family 71 266 4.1E-31 T 06-07-2017 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 SUPERFAMILY SSF51182 7 264 2.52E-101 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 Gene3D G3DSA:2.60.120.500 136 280 1.6E-68 T 06-07-2017 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 Gene3D G3DSA:2.60.120.520 24 135 2.7E-43 T 06-07-2017 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 PIRSF PIRSF006625 5 280 1.3E-131 T 06-07-2017 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS21310 18dd2bab78d8b02c112e4856d0db727a 280 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 5 280 54.878 T 06-07-2017 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 SUPERFAMILY SSF52540 9 242 4.71E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 Gene3D G3DSA:3.40.50.300 8 243 2.3E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 Pfam PF00005 ABC transporter 24 172 2.1E-37 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 SMART SM00382 33 220 3.3E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19800 b867d3da59f3f9f2c332b323b32b3a36 248 PIRSF PIRSF039085 5 248 1.5E-101 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 46 113 3.6E-11 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 TIGRFAM TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase 3 183 4.6E-106 T 06-07-2017 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 PIRSF PIRSF033318 1 188 1.9E-110 T 06-07-2017 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 Hamap MF_00723 Glutathione-dependent formaldehyde-activating enzyme [gfa]. 1 189 127.355 T 06-07-2017 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 SUPERFAMILY SSF51316 3 187 6.7E-58 T 06-07-2017 IPR011057 Mss4-like CDO28_RS31540 563183cdf7d4d38bd26f6167cafb069d 189 Gene3D G3DSA:3.90.1590.10 2 187 5.2E-56 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 Pfam PF02152 Dihydroneopterin aldolase 7 119 9.5E-27 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 5 119 1.1E-37 T 06-07-2017 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 Gene3D G3DSA:3.30.1130.10 5 119 1.8E-34 T 06-07-2017 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 SMART SM00905 7 120 9.0E-42 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 SUPERFAMILY SSF55620 5 120 2.39E-34 T 06-07-2017 CDO28_RS00215 5b04f6f7f996eb191707e5c893dca826 123 TIGRFAM TIGR00526 folB_dom: FolB domain 5 119 1.4E-20 T 06-07-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDO28_RS17275 063d11ff3d2df9953409c9ec8775ffc7 270 SUPERFAMILY SSF53955 5 147 4.22E-24 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS17275 063d11ff3d2df9953409c9ec8775ffc7 270 Gene3D G3DSA:1.10.530.10 10 156 2.9E-20 T 06-07-2017 CDO28_RS08145 7364a11b314ca4b91cf1dc5ec1759202 145 Pfam PF07681 DoxX 7 87 8.4E-21 T 06-07-2017 IPR032808 DoxX family CDO28_RS05330 cba02ee108c70f16d34b5b3848204fa3 133 SUPERFAMILY SSF46785 13 115 3.2E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05330 cba02ee108c70f16d34b5b3848204fa3 133 Pfam PF01638 HxlR-like helix-turn-helix 24 110 2.3E-31 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS05330 cba02ee108c70f16d34b5b3848204fa3 133 Gene3D G3DSA:1.10.10.10 11 110 8.5E-41 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06725 73e91ebc437b04739c05c69e1c2d53c7 168 Pfam PF00293 NUDIX domain 24 148 1.2E-7 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS06725 73e91ebc437b04739c05c69e1c2d53c7 168 SUPERFAMILY SSF55811 12 154 4.2E-18 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS06725 73e91ebc437b04739c05c69e1c2d53c7 168 Gene3D G3DSA:3.90.79.10 22 150 1.8E-16 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 SUPERFAMILY SSF53850 92 287 2.71E-28 T 06-07-2017 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 Gene3D G3DSA:3.40.190.10 87 198 3.2E-11 T 06-07-2017 CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 Pfam PF03466 LysR substrate binding domain 91 286 1.4E-22 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 SUPERFAMILY SSF46785 4 87 1.2E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 Gene3D G3DSA:1.10.10.10 3 80 1.7E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25465 f93c140afabbd327174b106bcaf3cfb7 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 8.5E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 Gene3D G3DSA:3.40.50.720 1 198 9.6E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 2.4E-20 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 PRINTS PR01713 Nucleotide sugar epimerase signature 257 272 2.4E-20 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 2.4E-20 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 PRINTS PR01713 Nucleotide sugar epimerase signature 296 313 2.4E-20 T 06-07-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 8.7E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 SUPERFAMILY SSF51735 1 336 2.12E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 Gene3D G3DSA:3.90.25.10 261 333 7.0E-23 T 06-07-2017 CDO28_RS05095 a66f7b9196228ca082f1d783a8cbbe67 341 Gene3D G3DSA:3.90.25.10 199 218 7.0E-23 T 06-07-2017 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 133 205 1.3E-18 T 06-07-2017 IPR001543 Surface presentation of antigen (SpoA) CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 SUPERFAMILY SSF101801 130 208 2.22E-17 T 06-07-2017 IPR001543 Surface presentation of antigen (SpoA) CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 PRINTS PR00956 Flagellar motor switch protein FliN signature 166 179 3.5E-24 T 06-07-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 PRINTS PR00956 Flagellar motor switch protein FliN signature 133 149 3.5E-24 T 06-07-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 PRINTS PR00956 Flagellar motor switch protein FliN signature 179 194 3.5E-24 T 06-07-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 PRINTS PR00956 Flagellar motor switch protein FliN signature 150 166 3.5E-24 T 06-07-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 Gene3D G3DSA:2.30.330.10 127 207 3.5E-25 T 06-07-2017 CDO28_RS07375 7a3f1b251d172bcbca7ed3ebb15a09e5 210 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 130 207 2.1E-28 T 06-07-2017 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 19 38 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 SUPERFAMILY SSF51161 304 400 7.76E-16 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 Gene3D G3DSA:3.90.550.10 337 380 3.3E-73 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 Gene3D G3DSA:3.90.550.10 15 294 3.3E-73 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 SUPERFAMILY SSF53448 15 287 7.98E-76 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 204 214 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 106 114 - T 06-07-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 14 390 1.7E-154 T 06-07-2017 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 Pfam PF00483 Nucleotidyl transferase 16 283 1.1E-64 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS12890 bbc6073ff4d3d05d3bf44bf3f1fe47dc 420 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 10 416 51.603 T 06-07-2017 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 CDO28_RS10850 ab9ded5eecfc7a29596e97410a16b113 414 Pfam PF01547 Bacterial extracellular solute-binding protein 42 313 3.1E-27 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS10850 ab9ded5eecfc7a29596e97410a16b113 414 Gene3D G3DSA:3.40.190.10 25 204 1.8E-28 T 06-07-2017 CDO28_RS10850 ab9ded5eecfc7a29596e97410a16b113 414 SUPERFAMILY SSF53850 24 412 2.75E-61 T 06-07-2017 CDO28_RS20315 99b2b2ef33a364f003dbd811da61771e 143 Pfam PF09722 Protein of unknown function (DUF2384) 90 140 2.3E-10 T 06-07-2017 IPR024467 Domain of unknown function DUF2384 CDO28_RS20315 99b2b2ef33a364f003dbd811da61771e 143 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 14 143 1.4E-44 T 06-07-2017 IPR011979 Conserved hypothetical protein CHP02293 CDO28_RS15070 2514839f0da8b0fe4e784ee0653b174b 355 SUPERFAMILY SSF144064 10 348 1.18E-128 T 06-07-2017 CDO28_RS15070 2514839f0da8b0fe4e784ee0653b174b 355 Gene3D G3DSA:3.40.1570.10 204 347 6.8E-11 T 06-07-2017 CDO28_RS15070 2514839f0da8b0fe4e784ee0653b174b 355 Gene3D G3DSA:3.40.1570.10 2 147 7.1E-6 T 06-07-2017 CDO28_RS15070 2514839f0da8b0fe4e784ee0653b174b 355 Pfam PF05171 Haemin-degrading HemS.ChuX domain 215 346 1.7E-42 T 06-07-2017 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 CDO28_RS15070 2514839f0da8b0fe4e784ee0653b174b 355 Pfam PF05171 Haemin-degrading HemS.ChuX domain 34 162 1.3E-41 T 06-07-2017 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 Gene3D G3DSA:3.40.47.10 256 401 1.6E-55 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 239 1.7E-53 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 158 176 - T 06-07-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 247 359 9.7E-34 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 SUPERFAMILY SSF53901 2 244 6.81E-60 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 SUPERFAMILY SSF53901 210 401 1.57E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 Gene3D G3DSA:3.40.47.10 2 250 1.0E-58 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 SMART SM00825 Beta-ketoacyl synthase 5 401 7.5E-14 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS23105 62435ee570b8150455aa3f8649cb5bf8 402 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS02395 f229793ed2b2dcd6228e64a00e8ef4a3 209 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 203 1.1E-54 T 06-07-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CDO28_RS02395 f229793ed2b2dcd6228e64a00e8ef4a3 209 Pfam PF01914 MarC family integral membrane protein 6 207 4.5E-55 T 06-07-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CDO28_RS06960 ccd77f08a3c8300ebccb2843924cd6cf 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 1.6E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06960 ccd77f08a3c8300ebccb2843924cd6cf 334 SUPERFAMILY SSF161098 91 160 2.45E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06960 ccd77f08a3c8300ebccb2843924cd6cf 334 SUPERFAMILY SSF161098 197 318 2.45E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06960 ccd77f08a3c8300ebccb2843924cd6cf 334 Gene3D G3DSA:1.10.3720.10 90 163 9.1E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06960 ccd77f08a3c8300ebccb2843924cd6cf 334 Gene3D G3DSA:1.10.3720.10 200 327 9.1E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32935 542b24db202ae0e1719d3d279f76ce89 282 Gene3D G3DSA:3.20.20.150 3 280 4.5E-77 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS32935 542b24db202ae0e1719d3d279f76ce89 282 SUPERFAMILY SSF51658 9 256 8.51E-49 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS32935 542b24db202ae0e1719d3d279f76ce89 282 Pfam PF01261 Xylose isomerase-like TIM barrel 25 211 7.2E-23 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS16550 5f9e14798f5aa7681f858b9ad806ad1c 426 Gene3D G3DSA:3.30.70.270 235 395 6.0E-45 T 06-07-2017 CDO28_RS16550 5f9e14798f5aa7681f858b9ad806ad1c 426 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 231 393 6.9E-37 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS16550 5f9e14798f5aa7681f858b9ad806ad1c 426 SMART SM00267 222 393 3.0E-46 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS16550 5f9e14798f5aa7681f858b9ad806ad1c 426 SUPERFAMILY SSF55073 238 393 7.14E-40 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS16550 5f9e14798f5aa7681f858b9ad806ad1c 426 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 389 7.9E-36 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS30555 da394739fca78efe0030cad474065df4 137 SUPERFAMILY SSF88723 2 135 4.21E-27 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS30555 da394739fca78efe0030cad474065df4 137 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 133 9.857 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS30555 da394739fca78efe0030cad474065df4 137 Gene3D G3DSA:3.40.50.1010 2 126 2.0E-18 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS30555 da394739fca78efe0030cad474065df4 137 Pfam PF01850 PIN domain 2 120 4.2E-14 T 06-07-2017 IPR002716 PIN domain CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 Pfam PF01061 ABC-2 type transporter 8 226 6.1E-37 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 6 257 7.9E-128 T 06-07-2017 IPR022403 Alcohol ABC transporter, permease protein CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 PIRSF PIRSF006648 2 257 2.9E-37 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 26 47 3.0E-8 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 143 167 3.0E-8 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS31535 490962d7684deadfdd1414e72575acc4 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 180 199 3.0E-8 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 SUPERFAMILY SSF53850 91 290 3.26E-24 T 06-07-2017 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 Gene3D G3DSA:3.40.190.10 89 180 1.9E-16 T 06-07-2017 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 SUPERFAMILY SSF46785 1 82 1.29E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 Gene3D G3DSA:3.40.190.10 181 262 3.0E-14 T 06-07-2017 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.8E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 Gene3D G3DSA:1.10.10.10 1 84 2.2E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 Pfam PF03466 LysR substrate binding domain 88 290 1.8E-24 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.8E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.8E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS18425 5dc0465b35014d74ed526fb9d2b0d984 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.8E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25915 6b093f653fdb704af5fe1d9321688ebf 123 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 43 113 4.2E-6 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25915 6b093f653fdb704af5fe1d9321688ebf 123 Gene3D G3DSA:1.10.760.10 37 114 2.6E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25915 6b093f653fdb704af5fe1d9321688ebf 123 SUPERFAMILY SSF46626 30 114 2.22E-15 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 Pfam PF13602 Zinc-binding dehydrogenase 200 318 1.2E-10 T 06-07-2017 CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 SMART SM00829 13 318 1.8E-8 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 Gene3D G3DSA:3.40.50.720 150 215 5.2E-4 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 1.5E-11 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 SUPERFAMILY SSF51735 114 245 1.43E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 SUPERFAMILY SSF51735 278 315 1.43E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 Gene3D G3DSA:3.90.180.10 1 149 1.8E-35 T 06-07-2017 IPR011032 GroES-like CDO28_RS06155 7d51a716bdcd6a5bc0f82caa04e6836a 322 SUPERFAMILY SSF50129 1 133 1.52E-32 T 06-07-2017 IPR011032 GroES-like CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 Pfam PF03466 LysR substrate binding domain 90 263 5.3E-31 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 SUPERFAMILY SSF53850 91 283 5.73E-30 T 06-07-2017 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.4E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.4E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.4E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 Gene3D G3DSA:3.40.190.10 189 248 1.2E-7 T 06-07-2017 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 Gene3D G3DSA:1.10.10.10 5 88 1.5E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 Gene3D G3DSA:3.40.190.10 89 188 8.8E-22 T 06-07-2017 CDO28_RS06765 da6528634276edffd9d2de3cd52707d3 316 SUPERFAMILY SSF46785 5 112 3.43E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 SUPERFAMILY SSF160935 14 479 5.75E-129 T 06-07-2017 CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 Gene3D G3DSA:2.60.120.600 297 480 6.0E-60 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 Gene3D G3DSA:1.10.3360.10 211 282 7.3E-7 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 Gene3D G3DSA:2.60.40.1610 90 210 2.2E-24 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 Pfam PF06742 Protein of unknown function (DUF1214) 346 457 6.8E-38 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS22030 879b28ed8f1ace7f96a772fb9f547889 480 Pfam PF06863 Protein of unknown function (DUF1254) 77 209 6.3E-43 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS17005 1e079fb371fa02711a2d259406d8a629 78 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 53 4.0E-15 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS17005 1e079fb371fa02711a2d259406d8a629 78 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 56 2.5E-21 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS17005 1e079fb371fa02711a2d259406d8a629 78 Pfam PF01165 Ribosomal protein S21 2 55 3.3E-20 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS17005 1e079fb371fa02711a2d259406d8a629 78 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 13.87 T 06-07-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF55073 73 252 9.73E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Pfam PF00536 SAM domain (Sterile alpha motif) 3 58 2.4E-9 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:3.40.50.300 264 330 5.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:3.40.50.300 386 466 5.1E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 75 244 1.0E-25 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF52540 417 530 1.52E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF52540 262 352 1.52E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Pfam PF13191 AAA ATPase domain 271 456 4.4E-17 T 06-07-2017 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF48452 809 882 2.91E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF48452 946 994 2.91E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SMART SM00044 47 234 3.3E-8 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:1.25.40.10 799 918 3.0E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:1.25.40.10 958 1013 3.0E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:3.30.70.1230 74 253 4.5E-33 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SMART SM00454 2 62 1.1E-4 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 Gene3D G3DSA:1.10.150.50 3 62 9.2E-11 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS30335 28353a52cbbfc2afd83dde094044b69e 1068 SUPERFAMILY SSF47769 2 59 1.05E-9 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS09865 fa522a8e75ce43d70df71e5a801d4b14 336 Pfam PF00482 Type II secretion system (T2SS), protein F 169 293 3.1E-22 T 06-07-2017 IPR018076 Type II secretion system F domain CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 SUPERFAMILY SSF52777 187 416 4.45E-89 T 06-07-2017 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Gene3D G3DSA:4.10.320.10 124 167 3.6E-13 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 SUPERFAMILY SSF51230 1 95 1.27E-27 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 187 414 9.6E-81 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 416 2.5E-172 T 06-07-2017 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Gene3D G3DSA:2.40.50.100 1 95 2.5E-29 T 06-07-2017 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Pfam PF02817 e3 binding domain 125 156 3.6E-8 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Pfam PF00364 Biotin-requiring enzyme 4 76 7.7E-22 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 SUPERFAMILY SSF47005 116 161 1.57E-8 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS11805 513ab890691221c66aa829976b8bb262 417 Gene3D G3DSA:3.30.559.10 178 415 1.3E-93 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 CDO28_RS22440 e3503f0d5b983d63543220f84cb8db38 101 SUPERFAMILY SSF48295 7 35 5.18E-6 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS22440 e3503f0d5b983d63543220f84cb8db38 101 Gene3D G3DSA:1.10.10.10 7 36 3.3E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22440 e3503f0d5b983d63543220f84cb8db38 101 Pfam PF01527 Transposase 7 51 3.8E-7 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 PRINTS PR01755 Bacterial translocase SecF protein signature 770 785 1.9E-25 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 PRINTS PR01755 Bacterial translocase SecF protein signature 690 704 1.9E-25 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 PRINTS PR01755 Bacterial translocase SecF protein signature 738 756 1.9E-25 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 PRINTS PR01755 Bacterial translocase SecF protein signature 576 591 1.9E-25 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Pfam PF07549 SecD/SecF GG Motif 39 62 2.5E-6 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Pfam PF07549 SecD/SecF GG Motif 572 597 2.4E-5 T 06-07-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 577 823 4.8E-72 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 292 515 2.0E-60 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 629 820 1.2E-50 T 06-07-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 SUPERFAMILY SSF82866 615 834 3.79E-37 T 06-07-2017 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 549 834 24.537 T 06-07-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 SUPERFAMILY SSF82866 332 531 1.57E-34 T 06-07-2017 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Pfam PF02355 Protein export membrane protein 355 518 6.4E-19 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Pfam PF02355 Protein export membrane protein 653 831 1.9E-59 T 06-07-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Gene3D G3DSA:1.20.1640.10 669 837 3.5E-25 T 06-07-2017 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Gene3D G3DSA:1.20.1640.10 333 533 4.6E-26 T 06-07-2017 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 536 33.912 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDO28_RS02670 5bd6d239a7645036cf301274dba8381f 858 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 47 523 2.7E-109 T 06-07-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 SUPERFAMILY SSF51905 33 248 1.23E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 SUPERFAMILY SSF51905 335 391 1.23E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Gene3D G3DSA:2.102.10.10 375 490 3.5E-30 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 PRINTS PR00162 Rieske 2Fe-2S subunit signature 474 486 3.8E-7 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 PRINTS PR00162 Rieske 2Fe-2S subunit signature 441 452 3.8E-7 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 PRINTS PR00162 Rieske 2Fe-2S subunit signature 462 474 3.8E-7 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Pfam PF01266 FAD dependent oxidoreductase 33 376 6.5E-43 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Gene3D G3DSA:3.50.50.60 168 247 2.1E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Gene3D G3DSA:3.50.50.60 19 120 2.1E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Gene3D G3DSA:3.50.50.60 335 374 2.1E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 SUPERFAMILY SSF50022 406 490 1.44E-27 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS24945 d89c7197c87e4f3ba2d72980f7127b46 491 Pfam PF00355 Rieske [2Fe-2S] domain 408 487 1.2E-17 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 SUPERFAMILY SSF54106 282 324 3.14E-10 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Pfam PF01476 LysM domain 168 209 3.7E-10 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Pfam PF01476 LysM domain 282 324 2.7E-13 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Gene3D G3DSA:2.70.70.10 382 512 4.3E-38 T 06-07-2017 CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Gene3D G3DSA:3.10.350.10 168 210 2.7E-12 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 SMART SM00257 281 324 4.1E-16 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 SMART SM00257 165 209 1.1E-13 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 SUPERFAMILY SSF54106 165 209 1.96E-7 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Gene3D G3DSA:3.10.350.10 282 325 2.2E-17 T 06-07-2017 IPR018392 LysM domain CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 SUPERFAMILY SSF51261 361 511 1.14E-43 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS02685 ceebe49c6e85dfc456a4df61f5d216ab 512 Pfam PF01551 Peptidase family M23 413 507 1.3E-27 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.30.70.1400 488 545 3.5E-9 T 06-07-2017 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 SUPERFAMILY SSF103025 416 710 1.57E-84 T 06-07-2017 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.30.1360.120 575 671 5.0E-36 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.30.1360.120 419 487 5.0E-36 T 06-07-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.30.9.10 220 322 2.5E-41 T 06-07-2017 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.30.9.10 86 140 2.5E-41 T 06-07-2017 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 SUPERFAMILY SSF101790 719 805 1.32E-19 T 06-07-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.50.50.60 2 82 3.1E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.50.50.60 326 383 3.1E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:3.50.50.60 141 219 3.1E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 705 792 1.2E-15 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Gene3D G3DSA:2.40.30.110 716 791 1.6E-19 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Pfam PF16350 FAD dependent oxidoreductase central domain 367 420 2.8E-18 T 06-07-2017 IPR032503 FAD dependent oxidoreductase, central domain CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Pfam PF01266 FAD dependent oxidoreductase 7 364 3.2E-52 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 SUPERFAMILY SSF51905 326 388 6.15E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 SUPERFAMILY SSF51905 6 220 6.15E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 SUPERFAMILY SSF54373 220 324 1.02E-29 T 06-07-2017 CDO28_RS24625 8a81acacd6b88900a9feaae024fff33f 806 Pfam PF01571 Aminomethyltransferase folate-binding domain 424 692 1.2E-60 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 Gene3D G3DSA:2.40.30.60 3 91 2.9E-26 T 06-07-2017 IPR002676 RimM protein GO:0006364 CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 SUPERFAMILY SSF50346 99 166 8.11E-15 T 06-07-2017 IPR011033 PRC-barrel-like CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 170 23.266 T 06-07-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 Pfam PF01782 RimM N-terminal domain 10 87 1.4E-23 T 06-07-2017 IPR002676 RimM protein GO:0006364 CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 SUPERFAMILY SSF50447 7 91 2.4E-20 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 Pfam PF05239 PRC-barrel domain 96 168 8.9E-14 T 06-07-2017 IPR027275 PRC-barrel domain CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 166 4.9E-45 T 06-07-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CDO28_RS11120 6785ab4e3c168857a1cf62fe9415290a 187 Gene3D G3DSA:2.30.30.240 99 166 3.1E-16 T 06-07-2017 CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 12 317 4.6E-22 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 Gene3D G3DSA:3.40.50.720 119 288 4.4E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 151 178 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 SUPERFAMILY SSF52283 7 137 4.54E-28 T 06-07-2017 CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 285 1.7E-49 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 SUPERFAMILY SSF51735 106 285 3.55E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20920 8192c6dd3582fb2903333f2f883a4a6f 317 Gene3D G3DSA:3.40.50.720 7 118 1.1E-26 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06860 97eed69b03cf31b321f5d179256d8e08 407 SUPERFAMILY SSF48452 28 134 8.43E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06860 97eed69b03cf31b321f5d179256d8e08 407 SUPERFAMILY SSF46785 332 386 1.25E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06860 97eed69b03cf31b321f5d179256d8e08 407 Gene3D G3DSA:1.10.10.10 334 373 6.9E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30485 0cc14c15c4089c745575ed150a4d27ae 174 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 19 174 1.6E-56 T 06-07-2017 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit CDO28_RS30485 0cc14c15c4089c745575ed150a4d27ae 174 Pfam PF01883 Domain of unknown function DUF59 10 71 1.4E-12 T 06-07-2017 IPR002744 Domain of unknown function DUF59 CDO28_RS30485 0cc14c15c4089c745575ed150a4d27ae 174 SUPERFAMILY SSF117916 10 101 2.55E-24 T 06-07-2017 CDO28_RS25410 50e4874dd3f540138713f650df4e4e30 161 Gene3D G3DSA:1.10.10.690 61 149 1.4E-28 T 06-07-2017 IPR027405 YidB-like CDO28_RS25410 50e4874dd3f540138713f650df4e4e30 161 Pfam PF06078 Bacterial protein of unknown function (DUF937) 9 141 2.9E-10 T 06-07-2017 IPR009282 Protein of unknown function DUF937 CDO28_RS25410 50e4874dd3f540138713f650df4e4e30 161 SUPERFAMILY SSF140804 46 149 1.27E-26 T 06-07-2017 IPR027405 YidB-like CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 252 371 4.1E-32 T 06-07-2017 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 249 6.3E-31 T 06-07-2017 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 SUPERFAMILY SSF55979 1 119 2.47E-26 T 06-07-2017 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Gene3D G3DSA:3.10.150.10 1 121 1.9E-30 T 06-07-2017 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 SUPERFAMILY SSF55979 251 372 2.69E-36 T 06-07-2017 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Gene3D G3DSA:3.10.150.10 126 254 2.3E-36 T 06-07-2017 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 371 3.7E-91 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 PIRSF PIRSF000804 1 372 1.2E-120 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 SMART SM00480 17 368 2.3E-120 T 06-07-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Gene3D G3DSA:3.10.150.10 255 372 1.2E-36 T 06-07-2017 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 2.8E-33 T 06-07-2017 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDO28_RS08885 3e3f9a6e69a05db366b9e1c30ca6b0b2 372 SUPERFAMILY SSF55979 127 250 9.42E-27 T 06-07-2017 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.6E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 4.6E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 SUPERFAMILY SSF53850 95 304 9.31E-31 T 06-07-2017 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 5 301 3.0E-133 T 06-07-2017 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 Gene3D G3DSA:1.10.10.10 7 91 9.6E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 Gene3D G3DSA:3.40.190.10 97 213 2.0E-23 T 06-07-2017 CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 SUPERFAMILY SSF46785 5 115 2.49E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30185 f5fc9cbde6fcad79ae6f2a73aa183b86 313 Pfam PF03466 LysR substrate binding domain 93 301 2.9E-28 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS26480 b52316008b59c326c8897df4fc7504f1 430 Pfam PF04932 O-Antigen ligase 214 356 2.9E-8 T 06-07-2017 IPR007016 O-antigen ligase-related CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SUPERFAMILY SSF52540 442 572 3.41E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SUPERFAMILY SSF52540 306 374 3.41E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 111 280 1.4E-26 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Pfam PF00536 SAM domain (Sterile alpha motif) 31 89 1.9E-15 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Gene3D G3DSA:1.10.150.50 30 89 1.4E-18 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SUPERFAMILY SSF55073 109 292 1.19E-48 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Gene3D G3DSA:3.30.70.1230 112 291 3.9E-36 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Pfam PF13191 AAA ATPase domain 310 498 8.0E-26 T 06-07-2017 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SMART SM00454 25 91 3.3E-13 T 06-07-2017 IPR001660 Sterile alpha motif domain GO:0005515 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SMART SM00044 46 272 3.2E-18 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SUPERFAMILY SSF48452 903 1101 3.79E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 SUPERFAMILY SSF47769 30 94 1.26E-17 T 06-07-2017 IPR013761 Sterile alpha motif/pointed domain CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Gene3D G3DSA:3.40.50.300 452 500 1.9E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Gene3D G3DSA:3.40.50.300 307 397 1.9E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24940 2d97171630ee3bb43c3484fbfbf25692 1159 Gene3D G3DSA:1.25.40.10 950 1122 3.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 Pfam PF12833 Helix-turn-helix domain 211 286 1.4E-17 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 SUPERFAMILY SSF46689 241 286 9.32E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 Gene3D G3DSA:1.10.10.60 184 241 2.3E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 Gene3D G3DSA:1.10.10.60 242 286 1.2E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 SMART SM00342 205 288 8.3E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 Pfam PF06719 AraC-type transcriptional regulator N-terminus 26 176 2.5E-40 T 06-07-2017 IPR009594 Transcription regulator HTH, AraC, N-terminal CDO28_RS27545 b3399ba88c188708e5947f62a527a83f 311 SUPERFAMILY SSF46689 189 239 8.75E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 7.5E-36 T 06-07-2017 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 Gene3D G3DSA:3.40.50.720 143 273 3.0E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 SUPERFAMILY SSF51735 122 289 6.99E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 283 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 264 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 206 235 1.3E-79 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 290 2.1E-64 T 06-07-2017 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 269 277 - T 06-07-2017 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 Gene3D G3DSA:3.40.192.10 6 142 3.6E-43 T 06-07-2017 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 SUPERFAMILY SSF53223 2 121 1.63E-37 T 06-07-2017 CDO28_RS07170 3d0a82920c040ae93464bb348ce08691 299 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 292 36.943 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS32215 c1e26c209e023848db6d83be25d90b78 247 Gene3D G3DSA:3.40.720.10 40 208 1.4E-25 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS32215 c1e26c209e023848db6d83be25d90b78 247 SUPERFAMILY SSF53649 43 202 1.11E-27 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS32215 c1e26c209e023848db6d83be25d90b78 247 Pfam PF00884 Sulfatase 44 193 1.8E-13 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS07175 e43391d6272156cb5835ab00e1bf94c0 329 Gene3D G3DSA:3.90.550.10 26 242 2.6E-16 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS07175 e43391d6272156cb5835ab00e1bf94c0 329 Pfam PF13641 Glycosyltransferase like family 2 24 238 2.3E-10 T 06-07-2017 CDO28_RS07175 e43391d6272156cb5835ab00e1bf94c0 329 SUPERFAMILY SSF53448 24 263 6.66E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS08975 38faaccb76b75e34c19706fc55cd232c 186 SUPERFAMILY SSF55729 10 162 1.03E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08975 38faaccb76b75e34c19706fc55cd232c 186 Gene3D G3DSA:3.40.630.30 9 174 8.8E-43 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08975 38faaccb76b75e34c19706fc55cd232c 186 Pfam PF00583 Acetyltransferase (GNAT) family 75 151 7.6E-13 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 Pfam PF08388 Group II intron, maturase-specific domain 332 403 3.0E-17 T 06-07-2017 IPR013597 Group II intron, maturase-specific CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 SUPERFAMILY SSF56672 57 391 1.59E-53 T 06-07-2017 CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 104 117 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 172 190 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 230 243 1.1E-8 T 06-07-2017 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 53 397 5.4E-123 T 06-07-2017 IPR030931 Group II intron reverse transcriptase/maturase CDO28_RS29250 f68422fb860eb5a02ff40dbc9b3feb38 453 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 109 314 7.2E-42 T 06-07-2017 IPR000477 Reverse transcriptase domain CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 1.5E-23 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 SUPERFAMILY SSF55653 57 146 4.32E-25 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 Gene3D G3DSA:3.40.5.10 1 51 1.5E-21 T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 Gene3D G3DSA:3.10.430.100 61 146 4.2E-26 T 06-07-2017 IPR020069 Ribosomal protein L9, C-terminal CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 23.737 T 06-07-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 6.0E-37 T 06-07-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 SUPERFAMILY SSF55658 1 57 1.67E-15 T 06-07-2017 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CDO28_RS04830 63535a01122d569a0ad8e32ea007b4be 191 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 7.3E-19 T 06-07-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS23415 e53da90b53faac27da0d6d8d7bc582a7 291 SUPERFAMILY SSF161098 82 267 4.97E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23415 e53da90b53faac27da0d6d8d7bc582a7 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 284 2.1E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23415 e53da90b53faac27da0d6d8d7bc582a7 291 Gene3D G3DSA:1.10.3720.10 80 286 3.3E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 SMART SM00267 167 339 1.3E-52 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 Gene3D G3DSA:3.30.450.40 32 159 8.4E-9 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 Pfam PF00990 Diguanylate cyclase, GGDEF domain 178 335 4.3E-43 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 SUPERFAMILY SSF55073 183 339 1.96E-43 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 174 338 8.6E-42 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 Gene3D G3DSA:3.30.70.270 180 341 1.6E-49 T 06-07-2017 CDO28_RS32530 ad8952e1d43d01d202ae80c8c04852b2 347 SUPERFAMILY SSF55781 32 161 1.15E-16 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 2.4E-81 T 06-07-2017 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 SUPERFAMILY SSF51556 1 254 9.96E-89 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 06-07-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 Pfam PF01026 TatD related DNase 3 254 7.9E-80 T 06-07-2017 IPR001130 TatD family GO:0016788 CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 Gene3D G3DSA:3.20.20.140 1 254 4.0E-89 T 06-07-2017 CDO28_RS02155 dbab449256cecdf2a3212e3d6eb26573 259 PIRSF PIRSF005902 1 257 2.3E-76 T 06-07-2017 IPR001130 TatD family GO:0016788 CDO28_RS17165 68ba9ff2a50901783336727cac995873 276 SMART SM00978 129 273 2.8E-39 T 06-07-2017 IPR007379 Tim44-like domain CDO28_RS17165 68ba9ff2a50901783336727cac995873 276 SUPERFAMILY SSF54427 150 272 1.74E-25 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS17165 68ba9ff2a50901783336727cac995873 276 Pfam PF04280 Tim44-like domain 150 272 7.5E-32 T 06-07-2017 IPR007379 Tim44-like domain CDO28_RS10760 763e0fdacea5121d29f1934f854272fa 215 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 91 111 - T 06-07-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS10760 763e0fdacea5121d29f1934f854272fa 215 Pfam PF00484 Carbonic anhydrase 41 200 3.2E-49 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS10760 763e0fdacea5121d29f1934f854272fa 215 SUPERFAMILY SSF53056 7 210 6.8E-62 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS10760 763e0fdacea5121d29f1934f854272fa 215 Gene3D G3DSA:3.40.1050.10 6 211 8.8E-66 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS10760 763e0fdacea5121d29f1934f854272fa 215 SMART SM00947 34 204 8.7E-64 T 06-07-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 130 150 6.5E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 6.5E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 6.5E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 6.5E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 Pfam PF01047 MarR family 52 104 1.5E-9 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 SUPERFAMILY SSF46785 38 156 4.0E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 Gene3D G3DSA:1.10.10.10 38 155 3.5E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18960 e8977045318490796d2fe1d8740a2f1e 164 SMART SM00347 38 140 2.5E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 SUPERFAMILY SSF52467 157 361 4.81E-48 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Gene3D G3DSA:3.40.50.970 362 585 1.2E-60 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 591 0.0 T 06-07-2017 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 327 5.4E-36 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 172 4.7E-52 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 554 9.5E-35 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Gene3D G3DSA:3.40.50.970 2 180 2.4E-62 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 SUPERFAMILY SSF52518 1 181 8.08E-50 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 SUPERFAMILY SSF52518 369 573 1.22E-51 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS29700 43de907652d316e6a7d76ab09c03e23b 594 Gene3D G3DSA:3.40.50.1220 190 358 2.6E-49 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 Gene3D G3DSA:3.30.390.30 309 397 1.6E-23 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 Pfam PF14759 Reductase C-terminal 309 395 3.5E-22 T 06-07-2017 IPR028202 Reductase, C-terminal CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 256 274 5.2E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 136 160 5.2E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 98 106 5.2E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 5.2E-12 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 290 1.6E-60 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 SUPERFAMILY SSF55424 304 397 1.65E-20 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.1E-25 T 06-07-2017 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 1.1E-25 T 06-07-2017 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.1E-25 T 06-07-2017 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 221 237 1.1E-25 T 06-07-2017 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 246 268 1.1E-25 T 06-07-2017 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 Gene3D G3DSA:3.50.50.60 106 299 9.4E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 SUPERFAMILY SSF51905 187 324 1.0E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 SUPERFAMILY SSF51905 4 157 1.0E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21775 c0a5ba77ef7261afc0a9db91583c6d58 401 Gene3D G3DSA:3.50.50.60 4 105 7.8E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS17435 0c25df88953e82379421b4e4509805c4 195 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 74 166 1.3E-28 T 06-07-2017 IPR022026 Methylene-tetrahydrofolate reductase C-terminal CDO28_RS31150 6121e0d9630859ca6b3231464d0ad5fd 315 Gene3D G3DSA:1.10.3720.10 92 292 1.6E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31150 6121e0d9630859ca6b3231464d0ad5fd 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 297 2.5E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31150 6121e0d9630859ca6b3231464d0ad5fd 315 SUPERFAMILY SSF161098 93 280 7.33E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23720 09ae51c862278ecec8b0983bbbd2c8c5 241 SUPERFAMILY SSF53597 1 233 1.43E-28 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS23720 09ae51c862278ecec8b0983bbbd2c8c5 241 Pfam PF01872 RibD C-terminal domain 3 226 6.7E-16 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS23720 09ae51c862278ecec8b0983bbbd2c8c5 241 Gene3D G3DSA:3.40.430.10 1 233 5.7E-34 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 SMART SM00493 83 168 1.3E-4 T 06-07-2017 IPR006171 Toprim domain CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 201 94.176 T 06-07-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 Pfam PF02132 RecR protein 45 81 1.5E-12 T 06-07-2017 IPR023628 Recombination protein RecR, C4-type zinc finger CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 TIGRFAM TIGR00615 recR: recombination protein RecR 8 198 2.4E-64 T 06-07-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 SUPERFAMILY SSF111304 8 201 1.31E-69 T 06-07-2017 IPR023627 Recombination protein RecR CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 06-07-2017 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 CDO28_RS09420 0f5e9cda3269cbd402ec956fc4f52e21 201 Pfam PF13662 Toprim domain 84 174 3.3E-25 T 06-07-2017 IPR006171 Toprim domain CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 SMART SM00448 8 118 2.3E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 233 2.0E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 SMART SM00862 157 233 2.0E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 Gene3D G3DSA:3.40.50.2300 4 125 4.2E-38 T 06-07-2017 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 Gene3D G3DSA:1.10.10.10 134 236 3.7E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 SUPERFAMILY SSF46894 135 235 2.44E-22 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 Pfam PF00072 Response regulator receiver domain 10 119 2.4E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20050 50456dae389dac7b19ae68baf0d64348 240 SUPERFAMILY SSF52172 6 129 3.27E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS17725 890dde0f7e04a340920ba1ef89a472f0 411 Gene3D G3DSA:3.40.190.10 159 341 4.0E-18 T 06-07-2017 CDO28_RS17725 890dde0f7e04a340920ba1ef89a472f0 411 Pfam PF01547 Bacterial extracellular solute-binding protein 38 281 3.5E-23 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS17725 890dde0f7e04a340920ba1ef89a472f0 411 SUPERFAMILY SSF53850 25 405 1.21E-42 T 06-07-2017 CDO28_RS17725 890dde0f7e04a340920ba1ef89a472f0 411 Gene3D G3DSA:3.40.190.10 31 158 6.9E-10 T 06-07-2017 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 SUPERFAMILY SSF47741 82 147 4.19E-24 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 Pfam PF01799 [2Fe-2S] binding domain 71 142 1.0E-21 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 SUPERFAMILY SSF54292 2 75 1.7E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 57 4.1E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 Gene3D G3DSA:3.10.20.30 2 72 4.7E-30 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS23645 e35d1874280020088cbafec03f017e94 148 Gene3D G3DSA:1.10.150.120 73 147 1.3E-24 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS31135 0b8870b7dba658484be21a8fd247a89f 318 PIRSF PIRSF001365 11 310 6.6E-39 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31135 0b8870b7dba658484be21a8fd247a89f 318 SUPERFAMILY SSF51569 14 293 1.15E-23 T 06-07-2017 CDO28_RS31135 0b8870b7dba658484be21a8fd247a89f 318 Gene3D G3DSA:3.20.20.70 14 303 1.4E-27 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31135 0b8870b7dba658484be21a8fd247a89f 318 SMART SM01130 10 299 7.5E-6 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 SUPERFAMILY SSF54292 248 353 2.75E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00410 Phenol hydroxylase reductase family signature 54 66 5.0E-8 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00410 Phenol hydroxylase reductase family signature 133 152 5.0E-8 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00410 Phenol hydroxylase reductase family signature 226 234 5.0E-8 T 06-07-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 SUPERFAMILY SSF63380 24 125 3.4E-25 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Gene3D G3DSA:3.40.50.80 128 254 6.6E-29 T 06-07-2017 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 SUPERFAMILY SSF52343 129 257 3.8E-30 T 06-07-2017 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Pfam PF00970 Oxidoreductase FAD-binding domain 32 124 2.2E-14 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Pfam PF00175 Oxidoreductase NAD-binding domain 134 240 1.8E-15 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Gene3D G3DSA:3.10.20.30 255 353 4.0E-25 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Gene3D G3DSA:2.40.30.10 26 122 8.5E-24 T 06-07-2017 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 170 181 7.6E-5 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 73 80 7.6E-5 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 133 152 7.6E-5 T 06-07-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 282 346 1.2E-12 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS25295 5da688e7fe24c07c9bedde2f6eeb76ca 354 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 304 312 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 SMART SM01008 20 133 2.4E-38 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 442 534 2.1E-28 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 21 131 4.8E-24 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 SUPERFAMILY SSF54665 5 140 3.53E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 175 279 2.1E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 161 653 6.5E-123 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 SUPERFAMILY SSF56003 154 711 3.79E-168 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 282 336 7.4E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 121 174 7.4E-12 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 355 441 8.1E-57 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.30.365.10 567 710 8.1E-57 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS23670 1f9669fcfb4a076b70dfc36f9768cd68 711 Gene3D G3DSA:3.90.1170.50 4 120 1.3E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS04010 d6152d92f10d517d033effd7ddfc047c 228 SMART SM00382 35 223 1.6E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04010 d6152d92f10d517d033effd7ddfc047c 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04010 d6152d92f10d517d033effd7ddfc047c 228 SUPERFAMILY SSF52540 7 227 1.2E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04010 d6152d92f10d517d033effd7ddfc047c 228 Pfam PF00005 ABC transporter 26 174 6.6E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS04010 d6152d92f10d517d033effd7ddfc047c 228 Gene3D G3DSA:3.40.50.300 6 226 4.0E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 PRINTS PR00050 Cold shock protein signature 25 34 3.7E-5 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 PRINTS PR00050 Cold shock protein signature 4 19 3.7E-5 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 SMART SM00357 3 67 9.5E-19 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 Gene3D G3DSA:2.40.50.140 1 66 2.7E-23 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 PIRSF PIRSF002599 1 67 2.4E-16 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 SUPERFAMILY SSF50249 1 66 1.71E-19 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS22820 21931b0e3a99498ec926584b5861fea2 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.3E-20 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS22255 d10415614cd438453e64a5c2d4554316 271 SUPERFAMILY SSF51621 6 245 5.78E-55 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS22255 d10415614cd438453e64a5c2d4554316 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 70 241 7.9E-40 T 06-07-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDO28_RS22255 d10415614cd438453e64a5c2d4554316 271 Gene3D G3DSA:3.20.20.60 69 245 5.7E-49 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 10 260 5.9E-114 T 06-07-2017 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 Pfam PF12146 Serine aminopeptidase, S33 44 246 1.7E-16 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 2.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 2.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 205 219 2.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 2.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 Gene3D G3DSA:3.40.50.1820 3 261 2.2E-62 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS30180 7235f8b6c2f840434ef083000b1b11c4 268 SUPERFAMILY SSF53474 2 259 1.56E-62 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 178 5.3E-5 T 06-07-2017 CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 Gene3D G3DSA:3.40.50.720 1 244 3.9E-84 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 1.7E-60 T 06-07-2017 CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 SUPERFAMILY SSF51735 6 244 3.86E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.4E-15 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.4E-15 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.4E-15 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 2.4E-97 T 06-07-2017 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23110 96359a4629189edaca47cd1b94eee0d3 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 5.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11980 a74f996b19e43649a8bb5c5937d9b4ed 356 SUPERFAMILY SSF50331 243 346 1.41E-15 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS11980 a74f996b19e43649a8bb5c5937d9b4ed 356 SUPERFAMILY SSF52540 4 249 9.51E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11980 a74f996b19e43649a8bb5c5937d9b4ed 356 Pfam PF00005 ABC transporter 26 168 2.0E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11980 a74f996b19e43649a8bb5c5937d9b4ed 356 Gene3D G3DSA:3.40.50.300 4 240 2.5E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11980 a74f996b19e43649a8bb5c5937d9b4ed 356 SMART SM00382 34 226 3.2E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02695 5f69575ce9ebfbb47ceffeafb221d039 217 Gene3D G3DSA:3.40.50.150 18 214 2.5E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02695 5f69575ce9ebfbb47ceffeafb221d039 217 SUPERFAMILY SSF53335 16 211 1.52E-38 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02695 5f69575ce9ebfbb47ceffeafb221d039 217 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 135 150 - T 06-07-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CDO28_RS02695 5f69575ce9ebfbb47ceffeafb221d039 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 17 211 2.2E-38 T 06-07-2017 CDO28_RS05275 070af7f82854ea241ea65564b0040274 88 Gene3D G3DSA:1.25.40.10 14 70 7.6E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17570 2a283b737040dbedb5018f82ee1357e3 175 PIRSF PIRSF006135 7 175 6.1E-56 T 06-07-2017 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS17570 2a283b737040dbedb5018f82ee1357e3 175 Gene3D G3DSA:3.40.50.300 9 174 1.5E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17570 2a283b737040dbedb5018f82ee1357e3 175 SUPERFAMILY SSF52540 9 174 1.69E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17570 2a283b737040dbedb5018f82ee1357e3 175 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 9 172 1.5E-60 T 06-07-2017 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 PRINTS PR00123 ATP synthase A subunit signature 228 243 3.7E-31 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 PRINTS PR00123 ATP synthase A subunit signature 87 103 3.7E-31 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 PRINTS PR00123 ATP synthase A subunit signature 168 190 3.7E-31 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 PRINTS PR00123 ATP synthase A subunit signature 148 163 3.7E-31 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 8 244 4.7E-67 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 06-07-2017 IPR023011 ATPase, F0 complex, subunit A, active site Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 Pfam PF00119 ATP synthase A chain 32 241 4.5E-50 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 Gene3D G3DSA:1.20.120.220 79 246 8.7E-50 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 Hamap MF_01393 ATP synthase subunit a [atpB]. 7 248 15.365 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS06415 7885e0e5d718dc12cacf5676ebb27e77 250 SUPERFAMILY SSF81336 79 242 6.67E-46 T 06-07-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 CDO28_RS31545 d9cec0d9d6ef57ecf995e9b3c394a15b 188 Gene3D G3DSA:3.40.30.10 11 152 7.9E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS31545 d9cec0d9d6ef57ecf995e9b3c394a15b 188 Pfam PF00578 AhpC/TSA family 13 134 3.1E-15 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS31545 d9cec0d9d6ef57ecf995e9b3c394a15b 188 SUPERFAMILY SSF52833 6 182 2.06E-40 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00610 fc74fafb11239fc79e32aed45c595378 425 SUPERFAMILY SSF101960 25 423 2.22E-93 T 06-07-2017 CDO28_RS00610 fc74fafb11239fc79e32aed45c595378 425 Pfam PF01458 Uncharacterized protein family (UPF0051) 173 395 6.7E-64 T 06-07-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CDO28_RS00610 fc74fafb11239fc79e32aed45c595378 425 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 145 407 2.1E-82 T 06-07-2017 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 CDO28_RS00570 99b22d78ff4c563617fff3ae0c3ac361 1128 Pfam PF13116 Protein of unknown function 468 703 2.0E-8 T 06-07-2017 IPR025263 Domain of unknown function DUF3971 CDO28_RS00570 99b22d78ff4c563617fff3ae0c3ac361 1128 Pfam PF13502 AsmA-like C-terminal region 913 1106 4.3E-6 T 06-07-2017 IPR032712 AsmA-like, C-terminal CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Gene3D G3DSA:3.50.50.60 158 221 1.1E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Gene3D G3DSA:3.50.50.60 341 385 1.1E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Gene3D G3DSA:3.50.50.60 4 65 1.1E-19 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 SUPERFAMILY SSF54373 227 333 5.1E-6 T 06-07-2017 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Pfam PF01266 FAD dependent oxidoreductase 6 371 7.7E-32 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Gene3D G3DSA:3.30.9.10 224 337 2.6E-26 T 06-07-2017 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 Gene3D G3DSA:3.30.9.10 67 157 2.6E-26 T 06-07-2017 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 SUPERFAMILY SSF51905 338 384 3.76E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16340 dcf518677b360cb960f4a6d4bebfecbf 395 SUPERFAMILY SSF51905 5 230 3.76E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 Gene3D G3DSA:3.10.450.50 264 282 2.1E-5 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 SUPERFAMILY SSF103642 263 282 1.96E-5 T 06-07-2017 CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 Pfam PF00106 short chain dehydrogenase 10 199 8.7E-40 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 3.3E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.3E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.3E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 Pfam PF02810 SEC-C motif 266 281 3.8E-5 T 06-07-2017 IPR004027 SEC-C motif CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 Gene3D G3DSA:3.40.50.720 11 203 5.0E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 SUPERFAMILY SSF51735 10 257 2.0E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PIRSF PIRSF000126 3 266 6.9E-56 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.9E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.9E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.9E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.9E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02235 4809ebb01e6b9b2badd6d83392369fd8 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.9E-21 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16785 724b4f759fb7c138e92d735148310658 124 PIRSF PIRSF029720 1 124 1.0E-51 T 06-07-2017 IPR014558 Uncharacterised conserved lipoprotein CDO28_RS16785 724b4f759fb7c138e92d735148310658 124 Pfam PF03640 Secreted repeat of unknown function 80 122 1.9E-18 T 06-07-2017 IPR005297 Lipoprotein repeat CDO28_RS16785 724b4f759fb7c138e92d735148310658 124 Pfam PF03640 Secreted repeat of unknown function 25 68 4.1E-15 T 06-07-2017 IPR005297 Lipoprotein repeat CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 51 462 7.7E-127 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 248 338 2.4E-29 T 06-07-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 Gene3D G3DSA:3.40.50.720 47 268 5.3E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 SUPERFAMILY SSF48179 248 340 7.14E-30 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 SMART SM00984 366 466 3.0E-31 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 SUPERFAMILY SSF51735 51 241 7.81E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 51 227 3.0E-43 T 06-07-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 SUPERFAMILY SSF52413 357 465 5.49E-24 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 366 465 8.3E-21 T 06-07-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 PIRSF PIRSF000124 50 475 3.4E-63 T 06-07-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 PIRSF PIRSF500136 40 476 2.4E-141 T 06-07-2017 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 CDO28_RS26555 5309eeb9382bd73debdbe5e79aa970b1 477 Gene3D G3DSA:3.40.50.720 278 466 9.9E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 92 9.2E-41 T 06-07-2017 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 Pfam PF00216 Bacterial DNA-binding protein 3 91 6.0E-29 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 SUPERFAMILY SSF47729 3 91 1.77E-28 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 28.781 T 06-07-2017 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 Gene3D G3DSA:4.10.520.10 3 94 1.4E-30 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS08610 09fd49b647983ce1400498d4daaa50b6 103 SMART SM00411 1 91 3.3E-38 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 SUPERFAMILY SSF52540 141 373 4.47E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Pfam PF00072 Response regulator receiver domain 5 114 9.1E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 SMART SM00448 3 116 6.5E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 06-07-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Gene3D G3DSA:1.10.10.60 388 453 6.2E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Pfam PF02954 Bacterial regulatory protein, Fis family 412 450 3.1E-11 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 SUPERFAMILY SSF52172 4 186 1.41E-41 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Gene3D G3DSA:3.40.50.2300 3 129 2.2E-36 T 06-07-2017 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Gene3D G3DSA:1.10.8.60 312 387 2.7E-23 T 06-07-2017 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 SMART SM00382 162 302 7.6E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Gene3D G3DSA:3.40.50.300 141 310 3.6E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 SUPERFAMILY SSF46689 352 454 1.66E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 454 3.4E-5 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 418 435 3.4E-5 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 06-07-2017 IPR025944 Sigma-54 interaction domain, conserved site CDO28_RS03080 dcaa932fd4f1ddd62b5dc20c177326e6 454 Pfam PF00158 Sigma-54 interaction domain 142 305 3.8E-52 T 06-07-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 Gene3D G3DSA:3.40.630.10 4 188 2.8E-59 T 06-07-2017 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 Gene3D G3DSA:3.40.630.10 298 329 2.8E-59 T 06-07-2017 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 Gene3D G3DSA:3.40.630.10 383 458 2.8E-59 T 06-07-2017 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 Gene3D G3DSA:3.30.70.360 189 294 1.4E-18 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 Pfam PF01546 Peptidase family M20/M25/M40 108 399 7.4E-6 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 SUPERFAMILY SSF55031 189 294 1.12E-15 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 22 432 3.5E-77 T 06-07-2017 IPR017439 Amidohydrolase GO:0016787 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 PIRSF PIRSF037227 2 481 1.9E-235 T 06-07-2017 IPR017145 Aminobenzoyl-glutamate utilization protein B CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 SUPERFAMILY SSF53187 301 330 1.74E-55 T 06-07-2017 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 SUPERFAMILY SSF53187 383 448 1.74E-55 T 06-07-2017 CDO28_RS14495 39b4f470464cf1aef40f17330549d07b 486 SUPERFAMILY SSF53187 7 201 1.74E-55 T 06-07-2017 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 Gene3D G3DSA:1.10.10.10 150 205 5.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 SUPERFAMILY SSF52172 9 151 1.71E-33 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 Gene3D G3DSA:3.40.50.2300 8 149 6.2E-36 T 06-07-2017 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 SUPERFAMILY SSF46894 132 205 1.22E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 Pfam PF00072 Response regulator receiver domain 8 117 5.7E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 SMART SM00421 141 198 4.4E-23 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 7.1E-20 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 SMART SM00448 6 117 1.2E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 7.2E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 7.2E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS25155 3f16d8bb3fa0c929eab1df0b920fe951 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 7.2E-13 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 157 8.8E-59 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 PRINTS PR01576 Peptide deformylase signature 123 152 5.8E-39 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 PRINTS PR01576 Peptide deformylase signature 33 62 5.8E-39 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 PRINTS PR01576 Peptide deformylase signature 104 122 5.8E-39 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 PRINTS PR01576 Peptide deformylase signature 92 103 5.8E-39 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 Hamap MF_00163 Peptide deformylase [def]. 2 165 33.384 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 PIRSF PIRSF004749 1 173 1.5E-58 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 Gene3D G3DSA:3.90.45.10 5 168 2.5E-69 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 SUPERFAMILY SSF56420 1 163 1.31E-64 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS08445 e169d527d258e5874b891995c0db1c6d 174 Pfam PF01327 Polypeptide deformylase 4 155 8.1E-56 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03355 47a82a47d7d4cb59500851aa03ef2bcb 144 Pfam PF07370 Protein of unknown function (DUF1489) 5 144 3.1E-55 T 06-07-2017 IPR008320 Uncharacterised conserved protein UCP032025 CDO28_RS03355 47a82a47d7d4cb59500851aa03ef2bcb 144 PIRSF PIRSF032025 1 144 4.5E-76 T 06-07-2017 IPR008320 Uncharacterised conserved protein UCP032025 CDO28_RS29830 3c98a0f390dcf4879d6a59a8ed103f8d 421 Gene3D G3DSA:3.30.70.1230 241 419 5.8E-33 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS29830 3c98a0f390dcf4879d6a59a8ed103f8d 421 SMART SM00044 204 407 1.7E-8 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS29830 3c98a0f390dcf4879d6a59a8ed103f8d 421 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 241 411 4.9E-20 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS29830 3c98a0f390dcf4879d6a59a8ed103f8d 421 SUPERFAMILY SSF55073 233 419 1.57E-46 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 Pfam PF08281 Sigma-70, region 4 121 164 3.2E-8 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 165 6.0E-15 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 Gene3D G3DSA:1.10.10.10 112 166 9.9E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 SUPERFAMILY SSF88946 14 92 4.32E-13 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 Gene3D G3DSA:1.25.40.10 316 402 4.9E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 SUPERFAMILY SSF48452 316 402 5.69E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 SUPERFAMILY SSF88659 107 165 2.14E-8 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 Pfam PF04542 Sigma-70 region 2 14 77 8.6E-12 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS08695 7edc6ae8494b4c118987d4f865956f2a 423 Gene3D G3DSA:1.10.1740.10 15 96 6.1E-12 T 06-07-2017 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 Hamap MF_01416 ATP synthase subunit delta [atpD]. 9 186 19.172 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 Gene3D G3DSA:1.10.520.20 10 115 5.3E-25 T 06-07-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 146 165 - T 06-07-2017 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 Pfam PF00213 ATP synthase delta (OSCP) subunit 13 184 9.8E-49 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 SUPERFAMILY SSF47928 11 115 3.79E-25 T 06-07-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 PRINTS PR00125 ATP synthase delta subunit signature 144 159 2.1E-27 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 PRINTS PR00125 ATP synthase delta subunit signature 159 177 2.1E-27 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 PRINTS PR00125 ATP synthase delta subunit signature 94 108 2.1E-27 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 PRINTS PR00125 ATP synthase delta subunit signature 13 32 2.1E-27 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 PRINTS PR00125 ATP synthase delta subunit signature 83 94 2.1E-27 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS11880 a4ae68b43b5002feaf751f8663c25275 188 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 13 183 1.3E-34 T 06-07-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 Gene3D G3DSA:3.30.390.10 1 113 3.2E-47 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 SUPERFAMILY SSF51604 95 359 6.03E-80 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 15 107 3.5E-26 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 SUPERFAMILY SSF54826 1 112 9.48E-31 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 Pfam PF13378 Enolase C-terminal domain-like 128 355 2.0E-64 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 Gene3D G3DSA:3.20.20.120 114 349 2.8E-89 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 82 107 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 SMART SM00922 125 230 3.3E-21 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS33055 ad23ab41a63346c95610a26b8771858e 382 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 Pfam PF01546 Peptidase family M20/M25/M40 86 459 2.6E-39 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 Pfam PF07687 Peptidase dimerisation domain 203 362 4.1E-25 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 Gene3D G3DSA:3.30.70.360 205 371 2.4E-55 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 SUPERFAMILY SSF53187 7 205 1.23E-63 T 06-07-2017 CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 SUPERFAMILY SSF53187 376 461 1.23E-63 T 06-07-2017 CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 Gene3D G3DSA:3.40.630.10 375 462 4.4E-64 T 06-07-2017 CDO28_RS09720 503765a13b970c6634e2f558ea8293a8 464 Gene3D G3DSA:3.40.630.10 8 199 4.4E-64 T 06-07-2017 CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 SUPERFAMILY SSF51735 16 256 3.0E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 6.2E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 Gene3D G3DSA:3.40.50.720 16 255 3.0E-66 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 8.6E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 8.6E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 8.6E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25385 c3f4c7a0df8d0d69aed341f8172e171f 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 255 1.2E-55 T 06-07-2017 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 440 576 2.6E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 120 172 2.5E-10 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 280 333 2.5E-10 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 SUPERFAMILY SSF56003 154 740 5.23E-166 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 19 131 1.6E-19 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 SMART SM01008 19 132 7.1E-37 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.90.1170.50 3 119 5.1E-35 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 173 278 4.4E-39 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 684 3.6E-128 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 SUPERFAMILY SSF54665 4 137 1.31E-35 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 598 739 1.5E-46 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS27715 d6c5a6baebb4890251ed4cacf78b1ce5 741 Gene3D G3DSA:3.30.365.10 353 439 1.5E-46 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 Gene3D G3DSA:1.10.10.10 2 100 1.9E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 SUPERFAMILY SSF46785 2 93 5.93E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 SMART SM00418 8 89 2.9E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 4.0E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 4.0E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 4.0E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS05125 2495f137e732500b4ae4bc83b43ac56b 137 Pfam PF12840 Helix-turn-helix domain 9 69 8.1E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08800 843f4b57011b21a953cdab470bce21da 300 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 2 290 3.1E-107 T 06-07-2017 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 CDO28_RS08800 843f4b57011b21a953cdab470bce21da 300 SUPERFAMILY SSF51658 4 282 8.71E-54 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS08800 843f4b57011b21a953cdab470bce21da 300 Gene3D G3DSA:3.20.20.150 1 290 7.3E-72 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS08800 843f4b57011b21a953cdab470bce21da 300 Pfam PF01261 Xylose isomerase-like TIM barrel 30 241 2.1E-22 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 Gene3D G3DSA:2.30.42.10 138 206 6.7E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 SUPERFAMILY SSF52096 29 107 1.24E-36 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 SUPERFAMILY SSF52096 207 413 1.24E-36 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 Pfam PF13180 PDZ domain 134 203 2.0E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 Pfam PF03572 Peptidase family S41 234 388 1.6E-20 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 Gene3D G3DSA:3.90.226.10 221 411 6.5E-29 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 SMART SM00245 186 389 2.1E-7 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 Gene3D G3DSA:3.30.750.44 34 137 3.8E-5 T 06-07-2017 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 SUPERFAMILY SSF50156 129 207 1.12E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS28000 ea2f5136bbe2d02510a9b6663a9ef795 416 SMART SM00228 132 197 4.9E-8 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 254 2.8E-73 T 06-07-2017 CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 9.8E-48 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 5.2E-14 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 SUPERFAMILY SSF51735 6 255 5.04E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 Gene3D G3DSA:3.40.50.720 5 255 1.1E-95 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14420 9c6f96a4b96d594ce8e1fa9b46a5cab2 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 Pfam PF13377 Periplasmic binding protein-like domain 174 326 3.5E-22 T 06-07-2017 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 SUPERFAMILY SSF47413 5 64 1.72E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 SUPERFAMILY SSF53822 65 327 2.36E-39 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 SMART SM00354 5 75 2.9E-10 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 Gene3D G3DSA:3.40.50.2300 58 177 7.7E-22 T 06-07-2017 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 Gene3D G3DSA:1.10.260.40 6 57 1.8E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 Gene3D G3DSA:3.40.50.2300 178 305 2.7E-31 T 06-07-2017 CDO28_RS31375 b6aa91241081302d989d3789d6b67a11 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 4.0E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS26485 3411ce6c428b5e09ef1f0ce5e8dedda4 373 SUPERFAMILY SSF53756 6 360 2.0E-53 T 06-07-2017 CDO28_RS26485 3411ce6c428b5e09ef1f0ce5e8dedda4 373 Gene3D G3DSA:3.40.50.2000 151 337 2.8E-25 T 06-07-2017 CDO28_RS26485 3411ce6c428b5e09ef1f0ce5e8dedda4 373 Pfam PF00534 Glycosyl transferases group 1 180 338 2.2E-25 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS09875 56cd1d8e728e06714e72fc67ba13da6a 428 SUPERFAMILY SSF52540 166 407 1.65E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09875 56cd1d8e728e06714e72fc67ba13da6a 428 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 169 345 1.0E-7 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS09875 56cd1d8e728e06714e72fc67ba13da6a 428 Gene3D G3DSA:3.40.50.300 166 404 3.6E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09875 56cd1d8e728e06714e72fc67ba13da6a 428 SUPERFAMILY SSF52172 82 156 1.4E-5 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Gene3D G3DSA:3.40.190.10 196 292 2.7E-22 T 06-07-2017 CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 SUPERFAMILY SSF46785 31 111 1.47E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Gene3D G3DSA:1.10.10.10 26 110 4.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Pfam PF03466 LysR substrate binding domain 121 321 3.7E-20 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 SUPERFAMILY SSF53850 116 319 4.52E-35 T 06-07-2017 CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Gene3D G3DSA:3.40.190.10 297 324 8.6E-26 T 06-07-2017 CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Gene3D G3DSA:3.40.190.10 116 195 8.6E-26 T 06-07-2017 CDO28_RS23085 60ce4379ef9a6f3b96424f1fab4fdeac 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 34 92 4.9E-13 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Gene3D G3DSA:2.150.10.10 94 360 1.3E-24 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 SUPERFAMILY SSF51120 10 271 1.31E-10 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 PRINTS PR00313 NodO calcium binding signature 123 134 6.7E-13 T 06-07-2017 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 PRINTS PR00313 NodO calcium binding signature 208 216 6.7E-13 T 06-07-2017 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 PRINTS PR00313 NodO calcium binding signature 180 188 6.7E-13 T 06-07-2017 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 PRINTS PR00313 NodO calcium binding signature 235 244 6.7E-13 T 06-07-2017 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 226 242 0.0029 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 32 48 0.017 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 88 102 1.3 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 118 133 0.0034 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 200 215 0.0047 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 61 75 0.015 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 255 268 0.72 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 21 5.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 173 187 7.1 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS34635 7919b7a51e47931da0ff5ec615396f1b 361 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 146 160 0.66 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:3.30.2090.10 732 817 1.3E-23 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.5E-93 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:3.30.70.1430 41 141 8.4E-33 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Pfam PF00873 AcrB/AcrD/AcrF family 3 1037 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82866 841 1037 2.62E-43 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 41 134 6.54E-27 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 682 731 1.88E-27 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 818 867 1.88E-27 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1050 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:3.30.70.1430 579 681 3.8E-29 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:3.30.2090.10 184 278 1.3E-27 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82714 185 274 3.27E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82714 732 818 2.75E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 575 681 3.66E-26 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 138 184 5.75E-28 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82693 277 333 5.75E-28 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:1.10.3850.10 285 500 1.0E-61 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 Gene3D G3DSA:1.10.3850.10 825 1038 2.1E-54 T 06-07-2017 CDO28_RS08415 f4813fe45c59ed069a1bfe2cc8ecc98e 1061 SUPERFAMILY SSF82866 299 499 2.88E-53 T 06-07-2017 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 45 312 2.4E-77 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 SUPERFAMILY SSF53790 43 262 4.84E-82 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 45 245 2.8E-32 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 Gene3D G3DSA:3.40.1010.10 45 151 1.4E-14 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 PIRSF PIRSF005917 33 317 1.1E-98 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 122 133 - T 06-07-2017 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 44 264 37.197 T 06-07-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS08880 8b4bbfae1b638416ea78aa42dab38f4f 320 Gene3D G3DSA:3.30.950.10 152 265 3.1E-41 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 SUPERFAMILY SSF51905 440 501 9.26E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 SUPERFAMILY SSF51905 4 302 9.26E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 Pfam PF00732 GMC oxidoreductase 10 302 1.5E-11 T 06-07-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 Gene3D G3DSA:3.50.50.60 6 131 4.6E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 Gene3D G3DSA:3.50.50.60 198 304 4.6E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 Gene3D G3DSA:3.50.50.60 409 502 4.6E-62 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10870 669671ebc232f41d788091524f1c043a 506 Pfam PF05199 GMC oxidoreductase 437 494 4.2E-14 T 06-07-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 145 157 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 257 278 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 206 225 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 327 348 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 177 195 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 364 382 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 303 318 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 392 411 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 442 463 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 29 54 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 PRINTS PR01165 Cytochrome c oxidase subunit I signature 103 127 7.3E-83 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 Gene3D G3DSA:1.20.210.10 29 550 2.9E-159 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 SUPERFAMILY SSF81452 578 820 2.27E-6 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 SUPERFAMILY SSF81442 28 529 1.14E-151 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 39 485 5.0E-135 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 259 313 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27470 f9162ee298c9ae140324301ea27db4e9 841 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 31 527 1.3E-209 T 06-07-2017 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS21795 f50d203281b4668dfca39d13cefe3bde 105 SUPERFAMILY SSF47413 25 71 5.63E-12 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS21795 f50d203281b4668dfca39d13cefe3bde 105 Gene3D G3DSA:1.10.260.40 26 69 3.7E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS21795 f50d203281b4668dfca39d13cefe3bde 105 Pfam PF00356 Bacterial regulatory proteins, lacI family 29 69 3.1E-12 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS21795 f50d203281b4668dfca39d13cefe3bde 105 SMART SM00354 25 94 4.8E-6 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS03985 030e278ad82a48fe46fd357c8386ddef 123 SUPERFAMILY SSF52172 3 121 9.96E-35 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS03985 030e278ad82a48fe46fd357c8386ddef 123 Gene3D G3DSA:3.40.50.2300 3 121 1.3E-36 T 06-07-2017 CDO28_RS03985 030e278ad82a48fe46fd357c8386ddef 123 SMART SM00448 3 116 7.8E-33 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03985 030e278ad82a48fe46fd357c8386ddef 123 Pfam PF00072 Response regulator receiver domain 5 116 5.8E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23355 76aac48d8d6d30cfefb70055967456ca 409 Gene3D G3DSA:2.40.50.100 227 251 3.0E-9 T 06-07-2017 CDO28_RS23355 76aac48d8d6d30cfefb70055967456ca 409 Gene3D G3DSA:2.40.50.100 74 107 3.0E-9 T 06-07-2017 CDO28_RS23355 76aac48d8d6d30cfefb70055967456ca 409 Pfam PF13533 Biotin-lipoyl like 74 118 3.0E-6 T 06-07-2017 CDO28_RS23355 76aac48d8d6d30cfefb70055967456ca 409 SUPERFAMILY SSF111369 69 153 1.7E-5 T 06-07-2017 CDO28_RS13115 748115c5507ad61efdd11a9a1cfb4857 483 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 164 451 1.3E-26 T 06-07-2017 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 CDO28_RS13115 748115c5507ad61efdd11a9a1cfb4857 483 Gene3D G3DSA:3.40.50.720 2 174 9.3E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13115 748115c5507ad61efdd11a9a1cfb4857 483 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 16 160 5.1E-34 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 CDO28_RS13115 748115c5507ad61efdd11a9a1cfb4857 483 Gene3D G3DSA:3.30.360.30 175 483 1.6E-150 T 06-07-2017 IPR023181 Homospermidine synthase-like, domain KEGG: 00960+2.5.1.44 CDO28_RS19720 1db0c5d29fea34b8798f556a96cdc2b4 56 Gene3D G3DSA:2.70.98.10 3 54 4.1E-15 T 06-07-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 CDO28_RS19720 1db0c5d29fea34b8798f556a96cdc2b4 56 SUPERFAMILY SSF74650 4 52 3.45E-12 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CDO28_RS19720 1db0c5d29fea34b8798f556a96cdc2b4 56 Pfam PF01263 Aldose 1-epimerase 9 48 1.5E-9 T 06-07-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 530 882 2.8E-90 T 06-07-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 774 792 - T 06-07-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 463 474 - T 06-07-2017 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 296 2.0E-47 T 06-07-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 312 371 1.5E-11 T 06-07-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 PIRSF PIRSF000853 1 891 0.0 T 06-07-2017 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 SUPERFAMILY SSF52009 399 525 1.15E-36 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:3.30.470.20 247 356 9.0E-40 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 SUPERFAMILY SSF51621 524 884 1.95E-132 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 884 0.0 T 06-07-2017 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:3.30.1490.20 3 114 2.0E-56 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:3.30.1490.20 203 246 2.0E-56 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:3.50.30.10 415 519 7.1E-39 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:1.20.80.30 115 201 7.8E-33 T 06-07-2017 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:3.20.20.60 545 884 1.9E-140 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 SUPERFAMILY SSF56059 1 393 4.47E-145 T 06-07-2017 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Gene3D G3DSA:1.10.189.10 357 414 6.7E-31 T 06-07-2017 CDO28_RS05900 737bf5a32cdb69e24ea5cc2bb1988000 898 Pfam PF00391 PEP-utilising enzyme, mobile domain 436 516 3.5E-28 T 06-07-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDO28_RS17445 d0a50f247f2690a90e74aab3b74a0c18 155 Pfam PF07886 BA14K-like protein 122 151 1.5E-14 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 SUPERFAMILY SSF51905 1 191 1.75E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 SUPERFAMILY SSF51905 340 396 1.75E-42 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 349 371 1.5E-5 T 06-07-2017 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.5E-5 T 06-07-2017 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 394 1.6E-82 T 06-07-2017 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 28 400 8.9E-156 T 06-07-2017 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 SUPERFAMILY SSF160996 196 341 8.89E-9 T 06-07-2017 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 Gene3D G3DSA:3.50.50.60 2 189 3.4E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 Gene3D G3DSA:3.50.50.60 343 396 3.4E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32140 c794748160654641b9043a4a551d25c9 405 Pfam PF03486 HI0933-like protein 5 394 1.9E-98 T 06-07-2017 CDO28_RS22705 1c0e9b165d5150ff6fa47e28a1883a06 509 Pfam PF00665 Integrase core domain 151 263 4.0E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS22705 1c0e9b165d5150ff6fa47e28a1883a06 509 SUPERFAMILY SSF53098 159 302 1.59E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS22705 1c0e9b165d5150ff6fa47e28a1883a06 509 Gene3D G3DSA:3.30.420.10 163 301 5.3E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS22185 1c0e9b165d5150ff6fa47e28a1883a06 509 Pfam PF00665 Integrase core domain 151 263 4.0E-15 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS22185 1c0e9b165d5150ff6fa47e28a1883a06 509 SUPERFAMILY SSF53098 159 302 1.59E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS22185 1c0e9b165d5150ff6fa47e28a1883a06 509 Gene3D G3DSA:3.30.420.10 163 301 5.3E-5 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 SMART SM00116 13 61 3.6E-11 T 06-07-2017 IPR000644 CBS domain CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 SMART SM00116 79 126 8.2E-6 T 06-07-2017 IPR000644 CBS domain CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 Gene3D G3DSA:3.10.580.10 1 125 8.8E-33 T 06-07-2017 CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 Pfam PF00571 CBS domain 12 60 1.3E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 Pfam PF00571 CBS domain 72 124 1.4E-9 T 06-07-2017 IPR000644 CBS domain CDO28_RS03310 d37f26af1c277fc9cc1aa359b79d36ce 142 SUPERFAMILY SSF54631 1 140 2.91E-34 T 06-07-2017 CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 Gene3D G3DSA:3.40.50.620 391 535 1.8E-51 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 Gene3D G3DSA:3.40.50.620 205 353 1.8E-51 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 Pfam PF13537 Glutamine amidotransferase domain 80 136 6.5E-7 T 06-07-2017 IPR017932 Glutamine amidotransferase type 2 domain CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 PIRSF PIRSF001589 73 556 1.1E-64 T 06-07-2017 CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 Pfam PF00733 Asparagine synthase 208 535 8.6E-51 T 06-07-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 Gene3D G3DSA:3.60.20.10 85 183 1.8E-19 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 SUPERFAMILY SSF56235 73 183 2.32E-16 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 SUPERFAMILY SSF52402 205 349 2.39E-39 T 06-07-2017 CDO28_RS22160 434e28a2601c80a5564f2a197b0d86f6 572 SUPERFAMILY SSF52402 387 470 2.39E-39 T 06-07-2017 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 83 103 2.1E-26 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 107 129 2.1E-26 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 22 39 2.1E-26 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 133 151 2.1E-26 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 15 153 3.8E-41 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 Pfam PF02556 Preprotein translocase subunit SecB 14 153 5.9E-56 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 Gene3D G3DSA:3.10.420.10 13 159 1.3E-59 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 SUPERFAMILY SSF54611 9 151 8.5E-52 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS10605 930cf8d61d1ebac1b24c1f8b168bcb6e 168 Hamap MF_00821 Protein-export protein SecB [secB]. 1 155 32.064 T 06-07-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDO28_RS19750 ae54546adaac456cd4a66a01b7b544ef 351 Gene3D G3DSA:3.20.20.100 47 310 5.1E-44 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS19750 ae54546adaac456cd4a66a01b7b544ef 351 Pfam PF00248 Aldo/keto reductase family 58 310 3.8E-32 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS19750 ae54546adaac456cd4a66a01b7b544ef 351 SUPERFAMILY SSF51430 46 310 1.57E-50 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 ProSitePatterns PS00455 Putative AMP-binding domain signature. 221 232 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Gene3D G3DSA:3.40.50.980 36 163 2.8E-36 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Gene3D G3DSA:3.40.50.980 195 226 2.8E-36 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Gene3D G3DSA:3.30.300.30 470 565 1.0E-26 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Gene3D G3DSA:2.30.38.10 395 466 9.5E-29 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Gene3D G3DSA:3.40.50.980 227 394 1.4E-43 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 SUPERFAMILY SSF56801 31 565 4.58E-149 T 06-07-2017 CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Pfam PF13193 AMP-binding enzyme C-terminal domain 484 558 1.2E-18 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS08090 ccde98ca6d87af576e7aa213cb31a138 566 Pfam PF00501 AMP-binding enzyme 41 475 9.5E-105 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS28505 a4717f37f01032a0b83da4554b1b1368 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 320 5.5E-44 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS15200 75e3705eac7ad6a868e79d72f0ab81a9 247 SUPERFAMILY SSF50475 15 246 3.93E-51 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS15200 75e3705eac7ad6a868e79d72f0ab81a9 247 Gene3D G3DSA:3.20.180.10 167 247 1.1E-29 T 06-07-2017 IPR019595 Domain of unknown function DUF2470 CDO28_RS15200 75e3705eac7ad6a868e79d72f0ab81a9 247 Gene3D G3DSA:2.30.110.10 6 161 1.8E-52 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS15200 75e3705eac7ad6a868e79d72f0ab81a9 247 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 11 159 1.7E-10 T 06-07-2017 CDO28_RS15200 75e3705eac7ad6a868e79d72f0ab81a9 247 Pfam PF10615 Protein of unknown function (DUF2470) 175 243 6.6E-13 T 06-07-2017 IPR019595 Domain of unknown function DUF2470 CDO28_RS00445 0462df888951f7c12e6818a64ad2960b 224 SUPERFAMILY SSF89562 21 181 1.02E-50 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS00445 0462df888951f7c12e6818a64ad2960b 224 Pfam PF03737 Demethylmenaquinone methyltransferase 25 172 1.1E-39 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS00445 0462df888951f7c12e6818a64ad2960b 224 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 3 223 2.2E-108 T 06-07-2017 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 CDO28_RS00445 0462df888951f7c12e6818a64ad2960b 224 Gene3D G3DSA:3.50.30.40 22 180 2.5E-50 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS10985 364bd22aafd5923efad0885c548f957e 417 PIRSF PIRSF004640 6 411 2.7E-126 T 06-07-2017 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDO28_RS10985 364bd22aafd5923efad0885c548f957e 417 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 12 399 4.8E-130 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDO28_RS10985 364bd22aafd5923efad0885c548f957e 417 Pfam PF04551 GcpE protein 17 397 6.8E-109 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDO28_RS10985 364bd22aafd5923efad0885c548f957e 417 SUPERFAMILY SSF56014 301 387 1.06E-5 T 06-07-2017 CDO28_RS10985 364bd22aafd5923efad0885c548f957e 417 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 10 404 29.92 T 06-07-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 SUPERFAMILY SSF46894 138 204 2.14E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 200 1.2E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 SMART SM00448 2 115 2.1E-26 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 Pfam PF00072 Response regulator receiver domain 4 113 8.7E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 Gene3D G3DSA:1.10.10.10 148 203 4.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 SUPERFAMILY SSF52172 1 119 4.55E-29 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 SMART SM00421 145 202 5.1E-19 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.8E-11 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS30980 207cd571588f157ff3bdd512b5b37ca6 211 Gene3D G3DSA:3.40.50.2300 2 147 1.5E-32 T 06-07-2017 CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 18 263 8.0E-92 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 Hamap MF_01974 Methionine aminopeptidase [map]. 18 264 40.048 T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 181 199 - T 06-07-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 Gene3D G3DSA:3.90.230.10 23 266 1.7E-96 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 Pfam PF00557 Metallopeptidase family M24 27 255 1.1E-53 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 1.0E-21 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 PRINTS PR00599 Methionine aminopeptidase-1 signature 175 187 1.0E-21 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 PRINTS PR00599 Methionine aminopeptidase-1 signature 83 96 1.0E-21 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 PRINTS PR00599 Methionine aminopeptidase-1 signature 206 218 1.0E-21 T 06-07-2017 IPR001714 Peptidase M24, methionine aminopeptidase CDO28_RS00645 8b069971d99d6f8c7771074ef5691c3b 279 SUPERFAMILY SSF55920 22 268 1.57E-89 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS30440 848097cf8dcb3d8f460c4c9b10bee4c9 411 Gene3D G3DSA:3.40.190.10 162 344 4.1E-26 T 06-07-2017 CDO28_RS30440 848097cf8dcb3d8f460c4c9b10bee4c9 411 Gene3D G3DSA:3.40.190.10 23 161 1.6E-21 T 06-07-2017 CDO28_RS30440 848097cf8dcb3d8f460c4c9b10bee4c9 411 SUPERFAMILY SSF53850 24 403 8.61E-73 T 06-07-2017 CDO28_RS30440 848097cf8dcb3d8f460c4c9b10bee4c9 411 Pfam PF13416 Bacterial extracellular solute-binding protein 39 338 5.1E-38 T 06-07-2017 CDO28_RS04615 e981a88b67f1f8a39f3dcbf400c54489 252 Pfam PF00445 Ribonuclease T2 family 68 233 1.1E-19 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS04615 e981a88b67f1f8a39f3dcbf400c54489 252 SUPERFAMILY SSF55895 64 250 5.63E-42 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS04615 e981a88b67f1f8a39f3dcbf400c54489 252 Gene3D G3DSA:3.90.730.10 65 250 3.7E-41 T 06-07-2017 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 CDO28_RS04615 e981a88b67f1f8a39f3dcbf400c54489 252 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 100 107 - T 06-07-2017 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 CDO28_RS16130 c14d9c4295e1050d0c968c5f3fc7b0d1 145 Pfam PF02502 Ribose/Galactose Isomerase 3 138 4.2E-42 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS16130 c14d9c4295e1050d0c968c5f3fc7b0d1 145 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 141 1.0E-36 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS16130 c14d9c4295e1050d0c968c5f3fc7b0d1 145 SUPERFAMILY SSF89623 1 143 2.22E-43 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS16130 c14d9c4295e1050d0c968c5f3fc7b0d1 145 Gene3D G3DSA:3.40.1400.10 1 144 1.9E-48 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS16130 c14d9c4295e1050d0c968c5f3fc7b0d1 145 PIRSF PIRSF005384 1 145 3.2E-42 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 Gene3D G3DSA:3.40.50.2300 24 223 1.2E-66 T 06-07-2017 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 SUPERFAMILY SSF53822 24 368 2.1E-94 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 Pfam PF13458 Periplasmic binding protein 25 361 1.3E-63 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 253 271 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 276 289 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 328 343 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 87 97 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS14800 8c444c3f131725b23fcd3dc7ede6e21d 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 66 84 1.4E-29 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS25810 4fbc2f51fc796ba6c8981a3916f8b466 157 Pfam PF13302 Acetyltransferase (GNAT) domain 2 124 1.5E-21 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS25810 4fbc2f51fc796ba6c8981a3916f8b466 157 SUPERFAMILY SSF55729 2 126 3.37E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25810 4fbc2f51fc796ba6c8981a3916f8b466 157 Gene3D G3DSA:3.40.630.30 1 139 3.1E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15290 2165dde8e59a92a15e24ef211f88be8a 272 SUPERFAMILY SSF56112 17 268 2.77E-37 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS15290 2165dde8e59a92a15e24ef211f88be8a 272 Gene3D G3DSA:3.90.1200.10 90 269 2.1E-38 T 06-07-2017 CDO28_RS15290 2165dde8e59a92a15e24ef211f88be8a 272 Pfam PF01636 Phosphotransferase enzyme family 21 263 1.8E-25 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS15290 2165dde8e59a92a15e24ef211f88be8a 272 Gene3D G3DSA:3.30.200.20 17 87 1.3E-13 T 06-07-2017 CDO28_RS15290 2165dde8e59a92a15e24ef211f88be8a 272 PIRSF PIRSF000706 6 270 1.6E-67 T 06-07-2017 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 SUPERFAMILY SSF53850 28 335 1.68E-75 T 06-07-2017 CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 PIRSF PIRSF002825 1 338 1.6E-65 T 06-07-2017 IPR026045 Ferric binding protein CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 Gene3D G3DSA:3.40.190.10 131 267 1.5E-46 T 06-07-2017 CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 Pfam PF13343 Bacterial extracellular solute-binding protein 74 317 3.5E-36 T 06-07-2017 CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 Gene3D G3DSA:3.40.190.10 268 323 3.2E-36 T 06-07-2017 CDO28_RS32410 b3bde204293f62c87ba073a34f094823 342 Gene3D G3DSA:3.40.190.10 5 130 3.2E-36 T 06-07-2017 CDO28_RS05135 b8926c18693855cc9af9371c5a84d3ab 140 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 115 8.2E-49 T 06-07-2017 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 CDO28_RS05135 b8926c18693855cc9af9371c5a84d3ab 140 SUPERFAMILY SSF52833 2 136 2.3E-40 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05135 b8926c18693855cc9af9371c5a84d3ab 140 Pfam PF03960 ArsC family 6 113 8.1E-16 T 06-07-2017 IPR006660 Arsenate reductase-like CDO28_RS05135 b8926c18693855cc9af9371c5a84d3ab 140 Gene3D G3DSA:3.40.30.10 1 139 2.1E-60 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS13460 aff411b7fbd945e538e1908d48dc9d49 266 Gene3D G3DSA:2.40.160.20 47 264 9.0E-31 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS13460 aff411b7fbd945e538e1908d48dc9d49 266 SUPERFAMILY SSF56925 45 263 1.83E-27 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS13460 aff411b7fbd945e538e1908d48dc9d49 266 Pfam PF13505 Outer membrane protein beta-barrel domain 68 262 4.5E-13 T 06-07-2017 IPR027385 Outer membrane protein beta-barrel CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Gene3D G3DSA:2.30.38.10 330 408 1.2E-13 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 SUPERFAMILY SSF110710 624 863 6.28E-30 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 640 856 8.3E-33 T 06-07-2017 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Gene3D G3DSA:3.30.300.30 413 512 5.7E-20 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Pfam PF00501 AMP-binding enzyme 34 419 1.9E-63 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 SUPERFAMILY SSF56801 27 512 2.22E-105 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Pfam PF13193 AMP-binding enzyme C-terminal domain 430 500 9.1E-6 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Gene3D G3DSA:3.40.50.980 27 167 5.0E-26 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 Gene3D G3DSA:3.40.50.980 168 328 1.8E-33 T 06-07-2017 CDO28_RS18130 ef543ffe5ea9ef4fd6258a89c16f430a 878 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 Pfam PF01580 FtsK/SpoIIIE family 208 426 1.7E-64 T 06-07-2017 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 SMART SM00843 534 599 5.2E-35 T 06-07-2017 IPR018541 FtsK gamma domain CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 SMART SM00382 242 447 0.0099 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 SUPERFAMILY SSF52540 187 496 2.87E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 Pfam PF09397 Ftsk gamma domain 536 595 4.8E-25 T 06-07-2017 IPR018541 FtsK gamma domain CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 Gene3D G3DSA:3.40.50.300 184 491 5.7E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30255 6959dfa8e54d2eba68ab7b26e09914c3 611 SUPERFAMILY SSF46785 535 599 1.32E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 PIRSF PIRSF029775 1 101 6.8E-35 T 06-07-2017 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 Pfam PF01817 Chorismate mutase type II 15 92 2.7E-14 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 TIGRFAM TIGR01803 CM-like: chorismate mutase related enzymes 11 92 8.2E-41 T 06-07-2017 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 SUPERFAMILY SSF48600 4 95 2.75E-22 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 Gene3D G3DSA:1.20.59.10 2 93 1.5E-14 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS07790 5d4317e99b578bc3ab3566588655fd22 101 SMART SM00830 15 95 2.1E-22 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS34350 5a90bea52f09946357ebf41e7c2666ec 247 Pfam PF07478 D-ala D-ala ligase C-terminus 58 230 7.5E-7 T 06-07-2017 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS34350 5a90bea52f09946357ebf41e7c2666ec 247 SUPERFAMILY SSF56059 25 236 2.16E-20 T 06-07-2017 CDO28_RS34350 5a90bea52f09946357ebf41e7c2666ec 247 Gene3D G3DSA:3.30.470.20 15 26 7.8E-13 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS34350 5a90bea52f09946357ebf41e7c2666ec 247 Gene3D G3DSA:3.30.470.20 102 238 7.8E-13 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS34350 5a90bea52f09946357ebf41e7c2666ec 247 Gene3D G3DSA:3.30.1490.20 27 81 1.2E-6 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 7.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 7.9E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 Gene3D G3DSA:1.20.120.530 78 212 1.4E-18 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 Gene3D G3DSA:1.10.10.10 6 73 5.5E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 SMART SM00345 13 71 1.5E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 Pfam PF07729 FCD domain 85 204 1.6E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 SUPERFAMILY SSF48008 79 206 8.11E-17 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 SUPERFAMILY SSF46785 7 75 9.1E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 SMART SM00895 81 204 9.0E-8 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS20850 f653fa89ffe5eafba63a15d45f4cc555 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 71 1.6E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 SUPERFAMILY SSF158472 209 254 2.62E-9 T 06-07-2017 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 SMART SM00283 369 616 2.6E-98 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 Pfam PF00672 HAMP domain 188 253 5.5E-8 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 SUPERFAMILY SSF58104 336 623 1.05E-66 T 06-07-2017 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 431 615 2.9E-54 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 Gene3D G3DSA:1.10.287.950 385 588 2.2E-53 T 06-07-2017 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 SMART SM00304 316 368 0.24 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08305 8aec6fdcb518ee1df4ce6a907b3d4c44 665 SMART SM00304 207 260 1.0E-5 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS30305 6c765369261bd38a6601e357602aca88 430 Gene3D G3DSA:3.40.50.2300 146 338 1.4E-73 T 06-07-2017 CDO28_RS30305 6c765369261bd38a6601e357602aca88 430 Pfam PF13433 Periplasmic binding protein domain 31 399 1.1E-170 T 06-07-2017 CDO28_RS30305 6c765369261bd38a6601e357602aca88 430 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 396 4.7E-172 T 06-07-2017 IPR017777 ABC transporter, urea, substrate-binding, UrtA CDO28_RS30305 6c765369261bd38a6601e357602aca88 430 SUPERFAMILY SSF53822 30 402 7.61E-90 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32625 cc1369464bde0cc9507043bd1459cb7e 429 Pfam PF13460 NAD(P)H-binding 8 149 2.9E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32625 cc1369464bde0cc9507043bd1459cb7e 429 Gene3D G3DSA:3.40.50.720 1 220 2.3E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32625 cc1369464bde0cc9507043bd1459cb7e 429 SUPERFAMILY SSF51735 1 260 2.79E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32625 cc1369464bde0cc9507043bd1459cb7e 429 Pfam PF13781 DoxX-like family 322 420 3.0E-22 T 06-07-2017 IPR025695 DoxX-like family CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 Pfam PF07729 FCD domain 99 225 2.2E-22 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 Gene3D G3DSA:1.10.10.10 7 77 1.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 1.5E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 SMART SM00895 98 226 1.6E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 SMART SM00345 15 74 5.1E-24 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 SUPERFAMILY SSF46785 8 78 3.53E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 SUPERFAMILY SSF48008 96 231 1.57E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 4.4E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 4.4E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27360 2f864cbcf4064d85b048d825c4e1368b 249 Gene3D G3DSA:1.20.120.530 98 233 4.7E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 PIRSF PIRSF002741 7 506 2.1E-85 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 63 420 5.9E-81 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 SUPERFAMILY SSF53850 23 504 5.07E-109 T 06-07-2017 CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 Gene3D G3DSA:3.10.105.10 296 483 1.4E-37 T 06-07-2017 CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 Gene3D G3DSA:3.40.190.10 186 295 1.3E-26 T 06-07-2017 CDO28_RS14490 61eb15e41b685ddcd8703c68f622736b 514 Gene3D G3DSA:3.90.76.10 32 185 4.4E-42 T 06-07-2017 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 Pfam PF13411 MerR HTH family regulatory protein 2 69 2.0E-20 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 Gene3D G3DSA:1.10.1660.10 1 56 1.1E-25 T 06-07-2017 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 Gene3D G3DSA:1.10.1660.10 57 131 1.1E-26 T 06-07-2017 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 SMART SM00422 2 71 1.5E-25 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 5.2E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 5.2E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 5.2E-12 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS05635 942c450826592622a66bf9fc72b01b71 137 SUPERFAMILY SSF46955 2 127 1.79E-36 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 Pfam PF00571 CBS domain 281 334 7.2E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 Pfam PF00571 CBS domain 234 273 4.8E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 SMART SM00116 288 336 9.2 T 06-07-2017 IPR000644 CBS domain CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 SMART SM00116 225 273 2.4 T 06-07-2017 IPR000644 CBS domain CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 61 327 7.2E-87 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 PIRSF PIRSF004692 4 337 6.4E-126 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 Gene3D G3DSA:3.10.580.10 208 334 3.9E-32 T 06-07-2017 CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 SUPERFAMILY SSF53697 43 337 9.57E-59 T 06-07-2017 CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 Pfam PF01380 SIS domain 62 188 5.8E-28 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS33745 7cc6c087e9d741350094f846e18dcaa5 337 Gene3D G3DSA:3.40.50.10490 29 207 5.5E-45 T 06-07-2017 CDO28_RS27850 be4fe7f0d6c7abb36fff753ab3557ac2 363 Gene3D G3DSA:3.40.50.2000 170 317 9.4E-19 T 06-07-2017 CDO28_RS27850 be4fe7f0d6c7abb36fff753ab3557ac2 363 Pfam PF13439 Glycosyltransferase Family 4 18 119 1.4E-12 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS27850 be4fe7f0d6c7abb36fff753ab3557ac2 363 SUPERFAMILY SSF53756 10 340 3.34E-55 T 06-07-2017 CDO28_RS27850 be4fe7f0d6c7abb36fff753ab3557ac2 363 Pfam PF00534 Glycosyl transferases group 1 172 317 8.6E-24 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS32505 27f6c0622550a4bd73ccbc76b49cd3de 323 SUPERFAMILY SSF51556 2 241 2.72E-81 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS32505 27f6c0622550a4bd73ccbc76b49cd3de 323 SUPERFAMILY SSF51556 272 320 2.72E-81 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS32505 27f6c0622550a4bd73ccbc76b49cd3de 323 Gene3D G3DSA:3.20.20.140 11 321 3.8E-84 T 06-07-2017 CDO28_RS32505 27f6c0622550a4bd73ccbc76b49cd3de 323 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 11 316 6.7E-81 T 06-07-2017 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 CDO28_RS22125 86f61819ace822b75e41bc723fe73b33 365 SUPERFAMILY SSF53850 36 356 4.5E-49 T 06-07-2017 CDO28_RS22125 86f61819ace822b75e41bc723fe73b33 365 Gene3D G3DSA:3.40.190.10 143 286 8.1E-25 T 06-07-2017 CDO28_RS22125 86f61819ace822b75e41bc723fe73b33 365 Pfam PF13343 Bacterial extracellular solute-binding protein 95 300 2.4E-35 T 06-07-2017 CDO28_RS22125 86f61819ace822b75e41bc723fe73b33 365 Gene3D G3DSA:3.40.190.10 287 318 2.6E-22 T 06-07-2017 CDO28_RS22125 86f61819ace822b75e41bc723fe73b33 365 Gene3D G3DSA:3.40.190.10 10 140 2.6E-22 T 06-07-2017 CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 Pfam PF04972 BON domain 119 175 1.0E-10 T 06-07-2017 IPR007055 BON domain CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 PRINTS PR00811 Bacterial general secretion pathway protein D signature 242 266 6.5E-9 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 PRINTS PR00811 Bacterial general secretion pathway protein D signature 394 408 6.5E-9 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 PRINTS PR00811 Bacterial general secretion pathway protein D signature 371 389 6.5E-9 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 Pfam PF13629 Pilus formation protein N terminal region 42 112 5.9E-16 T 06-07-2017 IPR032789 Pilus formation protein, N-terminal CDO28_RS21155 a93e05d9aaaec22bd976335dce13479c 466 Pfam PF00263 Bacterial type II and III secretion system protein 246 407 2.7E-41 T 06-07-2017 IPR004846 Type II/III secretion system GO:0009306 CDO28_RS09240 1ccfb85791f35bf41827e2cce7b3e51a 96 Gene3D G3DSA:3.40.1440.10 2 48 5.7E-4 T 06-07-2017 IPR027299 GIY-YIG domain CDO28_RS09240 1ccfb85791f35bf41827e2cce7b3e51a 96 SUPERFAMILY SSF82771 1 89 3.01E-20 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS09240 1ccfb85791f35bf41827e2cce7b3e51a 96 Pfam PF01541 GIY-YIG catalytic domain 2 77 1.1E-13 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 SMART SM00382 27 215 1.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 SMART SM00382 279 473 0.27 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 SUPERFAMILY SSF52540 267 485 4.79E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 Gene3D G3DSA:3.40.50.300 2 225 2.8E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 Gene3D G3DSA:3.40.50.300 269 486 3.9E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 SUPERFAMILY SSF52540 2 224 4.52E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 Pfam PF00005 ABC transporter 271 424 3.3E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 Pfam PF00005 ABC transporter 19 167 3.3E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27330 fc3aa6a646b8a47a58089fa89a78b249 497 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS08370 7a8b71d66651718742c302aac2454644 258 Pfam PF13419 Haloacid dehalogenase-like hydrolase 43 218 1.0E-6 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS08370 7a8b71d66651718742c302aac2454644 258 SUPERFAMILY SSF56784 42 226 6.08E-29 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS08370 7a8b71d66651718742c302aac2454644 258 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 41 218 1.3E-67 T 06-07-2017 IPR010237 Pyrimidine 5-nucleotidase CDO28_RS08370 7a8b71d66651718742c302aac2454644 258 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 79 218 3.5E-8 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS08370 7a8b71d66651718742c302aac2454644 258 Gene3D G3DSA:3.40.50.1000 42 244 1.6E-22 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 Pfam PF01578 Cytochrome C assembly protein 32 189 4.4E-34 T 06-07-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 126 146 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 161 187 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 209 233 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 105 125 1.7E-56 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11175 19db823388d18d31c5309d32d6da800b 256 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 52 233 2.7E-84 T 06-07-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS17805 b9e34aafa8bf20f48944199e977b296b 302 Pfam PF00005 ABC transporter 29 156 7.0E-24 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17805 b9e34aafa8bf20f48944199e977b296b 302 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17805 b9e34aafa8bf20f48944199e977b296b 302 SMART SM00382 37 205 1.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17805 b9e34aafa8bf20f48944199e977b296b 302 SUPERFAMILY SSF52540 11 222 5.94E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17805 b9e34aafa8bf20f48944199e977b296b 302 Gene3D G3DSA:3.40.50.300 15 227 1.6E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 Pfam PF09084 NMT1/THI5 like 57 251 8.5E-16 T 06-07-2017 IPR015168 SsuA/THI5-like CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 SUPERFAMILY SSF53850 30 255 5.53E-40 T 06-07-2017 CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 Gene3D G3DSA:3.40.190.10 53 131 2.5E-4 T 06-07-2017 CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 SMART SM00062 31 254 0.0021 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 32 335 3.0E-162 T 06-07-2017 IPR010068 Periplasmic binding protein TauA GO:0015734|GO:0042597 CDO28_RS27555 b9c1fc2767dcf8b19afe783468fd37dd 339 Gene3D G3DSA:3.40.190.10 132 239 6.4E-19 T 06-07-2017 CDO28_RS11020 6d2c30c1efd88d322d6e58acea2e82a6 192 Pfam PF05233 PHB accumulation regulatory domain 74 113 2.5E-19 T 06-07-2017 IPR007897 PHB accumulation regulatory CDO28_RS11020 6d2c30c1efd88d322d6e58acea2e82a6 192 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 9 68 1.3E-29 T 06-07-2017 IPR012909 PHA accumulation regulator DNA-binding, N-terminal CDO28_RS11020 6d2c30c1efd88d322d6e58acea2e82a6 192 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 9 115 2.0E-43 T 06-07-2017 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 CDO28_RS02435 05965a007b46bcab073eeeb66971f90c 183 SUPERFAMILY SSF102712 18 120 2.48E-12 T 06-07-2017 CDO28_RS02435 05965a007b46bcab073eeeb66971f90c 183 Pfam PF14464 Prokaryotic homologs of the JAB domain 23 139 6.0E-17 T 06-07-2017 IPR028090 JAB domain, prokaryotic CDO28_RS02435 05965a007b46bcab073eeeb66971f90c 183 Gene3D G3DSA:3.40.140.10 18 132 3.0E-9 T 06-07-2017 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 236 253 0.55 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 263 280 0.0037 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 77 93 0.019 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 23 39 0.0025 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 136 0.9 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 104 120 0.0053 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 174 190 0.0062 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 40 56 0.035 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 58 74 0.0053 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 192 208 0.15 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 218 234 0.006 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 156 172 0.0021 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 282 297 0.24 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 37 55 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 278 296 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 PRINTS PR00313 NodO calcium binding signature 59 67 9.9E-11 T 06-07-2017 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 PRINTS PR00313 NodO calcium binding signature 86 94 9.9E-11 T 06-07-2017 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 PRINTS PR00313 NodO calcium binding signature 156 165 9.9E-11 T 06-07-2017 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 PRINTS PR00313 NodO calcium binding signature 29 40 9.9E-11 T 06-07-2017 CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 28 46 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 SUPERFAMILY SSF51120 12 138 5.02E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 SUPERFAMILY SSF51120 199 360 1.96E-27 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 242 260 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 19 37 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Gene3D G3DSA:2.150.10.10 4 139 2.2E-31 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Gene3D G3DSA:2.150.10.10 154 227 1.8E-20 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28835 15b709fecf2258fa2f1b6766abd9280d 387 Gene3D G3DSA:2.150.10.10 228 359 1.3E-27 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 SMART SM00849 19 218 3.5E-22 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 365 410 1.4E-8 T 06-07-2017 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 Pfam PF00753 Metallo-beta-lactamase superfamily 32 166 1.4E-13 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 Hamap MF_01491 Ribonuclease J [rnj]. 2 555 35.98 T 06-07-2017 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 SUPERFAMILY SSF56281 9 424 2.54E-80 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS04050 bd0a7cc3495a8628d97895c9cf15561a 555 Gene3D G3DSA:3.60.15.10 3 258 7.5E-72 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 Pfam PF00005 ABC transporter 23 173 8.7E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 Pfam PF00005 ABC transporter 277 429 3.4E-16 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 SUPERFAMILY SSF52540 276 484 1.18E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 SUPERFAMILY SSF52540 4 229 2.47E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 Gene3D G3DSA:3.40.50.300 3 225 8.7E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 Gene3D G3DSA:3.40.50.300 276 487 7.0E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 SMART SM00382 28 221 5.9E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30660 2ad960cf75f4061be712909758d2d4f8 501 SMART SM00382 285 478 3.1 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29515 9e7562cd2dc1a7aa2bbbff5cac5d82c8 249 SUPERFAMILY SSF63848 144 248 8.63E-29 T 06-07-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 CDO28_RS29515 9e7562cd2dc1a7aa2bbbff5cac5d82c8 249 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 28 248 1.2E-44 T 06-07-2017 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CDO28_RS29515 9e7562cd2dc1a7aa2bbbff5cac5d82c8 249 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 145 244 4.7E-29 T 06-07-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 CDO28_RS29515 9e7562cd2dc1a7aa2bbbff5cac5d82c8 249 Gene3D G3DSA:2.160.20.70 134 248 4.8E-33 T 06-07-2017 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 CDO28_RS29515 9e7562cd2dc1a7aa2bbbff5cac5d82c8 249 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 10 249 25.809 T 06-07-2017 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CDO28_RS27610 95b8593a2bcc96a4bc83550a37111f00 556 Pfam PF01895 PhoU domain 350 427 4.9E-8 T 06-07-2017 IPR026022 PhoU domain CDO28_RS27610 95b8593a2bcc96a4bc83550a37111f00 556 SUPERFAMILY SSF109755 328 539 1.26E-28 T 06-07-2017 CDO28_RS27610 95b8593a2bcc96a4bc83550a37111f00 556 Pfam PF02690 Na+/Pi-cotransporter 165 285 2.7E-11 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS27610 95b8593a2bcc96a4bc83550a37111f00 556 Pfam PF02690 Na+/Pi-cotransporter 16 151 7.6E-29 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS27610 95b8593a2bcc96a4bc83550a37111f00 556 Gene3D G3DSA:1.20.58.220 332 428 3.8E-10 T 06-07-2017 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Pfam PF00005 ABC transporter 29 185 3.8E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Pfam PF00005 ABC transporter 304 455 1.6E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 SUPERFAMILY SSF52540 8 256 1.78E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 SMART SM00382 312 504 9.9E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 SMART SM00382 37 235 1.9E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Gene3D G3DSA:3.40.50.300 7 259 4.3E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Gene3D G3DSA:3.40.50.300 276 528 6.6E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 SUPERFAMILY SSF52540 293 526 2.02E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 506 531 5.0E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS27055 0de3c7d7196d85605ae2344a55c3d320 533 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 267 0.0057 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Gene3D G3DSA:1.25.40.10 724 776 2.3E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Pfam PF10111 Glycosyltransferase like family 2 47 333 3.6E-132 T 06-07-2017 IPR019290 Glycosyltransferase 2-like, prokaryotic type CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Gene3D G3DSA:3.90.550.10 188 259 1.0E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Gene3D G3DSA:3.90.550.10 300 321 1.0E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Gene3D G3DSA:3.90.550.10 38 148 1.0E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 Pfam PF05159 Capsule polysaccharide biosynthesis protein 457 621 2.4E-13 T 06-07-2017 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 CDO28_RS33700 955100dcc7c00a5439f30e9c1ef59a4a 778 SUPERFAMILY SSF53448 66 267 2.81E-15 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 SUPERFAMILY SSF52540 228 428 4.37E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 SMART SM00382 226 365 2.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 ProSitePatterns PS00674 AAA-protein family signature. 333 351 - T 06-07-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 SUPERFAMILY SSF140990 435 618 1.31E-24 T 06-07-2017 CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 230 362 5.6E-33 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 Gene3D G3DSA:3.40.50.300 227 399 2.1E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02545 ac767bf8af35d6f18420341d1dde3517 623 Pfam PF01434 Peptidase family M41 441 603 4.2E-14 T 06-07-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 PIRSF PIRSF005572 30 412 2.8E-51 T 06-07-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 15 413 3.9E-177 T 06-07-2017 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 Gene3D G3DSA:3.90.1150.10 293 408 1.4E-24 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 SUPERFAMILY SSF53383 11 410 1.33E-131 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 Pfam PF00266 Aminotransferase class-V 33 402 1.4E-142 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS00615 fe413ea4270594b881da70c71efb44cf 414 Gene3D G3DSA:3.40.640.10 46 292 8.9E-88 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS21785 30c74210d1493a84c2fe19cac48abdfd 103 SUPERFAMILY SSF50022 1 102 3.54E-28 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS21785 30c74210d1493a84c2fe19cac48abdfd 103 Pfam PF00355 Rieske [2Fe-2S] domain 3 90 1.2E-18 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS21785 30c74210d1493a84c2fe19cac48abdfd 103 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 3 102 5.7E-56 T 06-07-2017 IPR012747 MocE Rieske [2Fe-2S] CDO28_RS21785 30c74210d1493a84c2fe19cac48abdfd 103 Gene3D G3DSA:2.102.10.10 2 102 5.0E-26 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS10065 ac8be3924e586fb0386662edb9c5eeb0 261 SUPERFAMILY SSF51735 1 227 7.88E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10065 ac8be3924e586fb0386662edb9c5eeb0 261 Gene3D G3DSA:3.40.50.720 4 174 2.2E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10065 ac8be3924e586fb0386662edb9c5eeb0 261 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 218 1.6E-22 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Gene3D G3DSA:3.40.50.300 571 645 1.8E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Gene3D G3DSA:3.40.50.300 720 775 1.8E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Pfam PF03389 MobA/MobL family 17 249 2.7E-76 T 06-07-2017 IPR005053 MobA/MobL protein CDO28_RS23340 49515da171569b11a197dab96a316631 1539 SUPERFAMILY SSF52540 286 333 6.48E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 SUPERFAMILY SSF52540 387 560 6.48E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Gene3D G3DSA:3.40.50.300 377 564 2.3E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Pfam PF13538 UvrD-like helicase C-terminal domain 727 765 4.9E-7 T 06-07-2017 IPR027785 UvrD-like helicase C-terminal domain CDO28_RS23340 49515da171569b11a197dab96a316631 1539 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 779 0.0 T 06-07-2017 IPR014136 Ti-type conjugative transfer relaxase TraA CDO28_RS23340 49515da171569b11a197dab96a316631 1539 SUPERFAMILY SSF52540 496 560 3.72E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 SUPERFAMILY SSF52540 612 778 3.72E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23340 49515da171569b11a197dab96a316631 1539 Pfam PF13604 AAA domain 391 578 7.9E-56 T 06-07-2017 CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 Gene3D G3DSA:1.10.101.10 186 234 7.5E-7 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 SUPERFAMILY SSF47090 184 246 1.52E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 Pfam PF03734 L,D-transpeptidase catalytic domain 335 462 8.7E-16 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 SUPERFAMILY SSF141523 335 465 9.16E-27 T 06-07-2017 CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 Pfam PF01471 Putative peptidoglycan binding domain 190 230 6.8E-5 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS16220 22a8acafaa5b878e876c8e5c433ce400 468 Gene3D G3DSA:2.40.440.10 331 466 2.1E-30 T 06-07-2017 CDO28_RS16950 b81cefd9b4af223cc5b187bd09531591 215 SUPERFAMILY SSF46689 18 77 7.09E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16950 b81cefd9b4af223cc5b187bd09531591 215 Gene3D G3DSA:1.10.357.10 63 214 1.2E-49 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS16950 b81cefd9b4af223cc5b187bd09531591 215 SUPERFAMILY SSF48498 88 211 1.48E-5 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS16950 b81cefd9b4af223cc5b187bd09531591 215 Gene3D G3DSA:1.10.10.60 17 62 1.4E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16950 b81cefd9b4af223cc5b187bd09531591 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 5.6E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS34430 fffee66fa2a6e332c8ac2374b5ce9f71 90 Pfam PF01527 Transposase 11 73 1.5E-15 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS34430 fffee66fa2a6e332c8ac2374b5ce9f71 90 Gene3D G3DSA:1.10.10.10 9 57 1.2E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS34430 fffee66fa2a6e332c8ac2374b5ce9f71 90 SUPERFAMILY SSF48295 9 58 2.2E-10 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS24350 e1c051e63f26927d242eb77c3b088f43 471 Pfam PF01425 Amidase 25 431 8.5E-91 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS24350 e1c051e63f26927d242eb77c3b088f43 471 SUPERFAMILY SSF75304 2 440 9.03E-117 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS24350 e1c051e63f26927d242eb77c3b088f43 471 ProSitePatterns PS00571 Amidases signature. 153 184 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CDO28_RS24350 e1c051e63f26927d242eb77c3b088f43 471 Gene3D G3DSA:3.90.1300.10 3 441 1.1E-118 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS31560 8f8468ed7697ba6393e2dcd2989ec6c3 129 SUPERFAMILY SSF55239 1 127 5.63E-55 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31560 8f8468ed7697ba6393e2dcd2989ec6c3 129 Gene3D G3DSA:3.30.190.10 1 126 2.5E-55 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31560 8f8468ed7697ba6393e2dcd2989ec6c3 129 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 5 103 1.0E-40 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS31560 8f8468ed7697ba6393e2dcd2989ec6c3 129 SMART SM00961 4 103 2.5E-55 T 06-07-2017 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 1.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 1.9E-5 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00412 Epoxide hydrolase signature 37 55 1.4E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00412 Epoxide hydrolase signature 115 128 1.4E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00412 Epoxide hydrolase signature 262 284 1.4E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 PRINTS PR00412 Epoxide hydrolase signature 101 114 1.4E-6 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 Gene3D G3DSA:3.40.50.1820 4 287 9.2E-63 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 SUPERFAMILY SSF53474 8 287 2.34E-65 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS12085 04c67dd624c0443cae6e163f9de25b88 291 Pfam PF00561 alpha/beta hydrolase fold 31 272 1.3E-28 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS10425 6d84251e727f36d8da06c4c02fd5fdf3 148 Gene3D G3DSA:3.40.50.300 6 136 1.2E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10425 6d84251e727f36d8da06c4c02fd5fdf3 148 Pfam PF07475 HPr Serine kinase C-terminal domain 4 89 6.2E-15 T 06-07-2017 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 CDO28_RS10425 6d84251e727f36d8da06c4c02fd5fdf3 148 SUPERFAMILY SSF53795 3 132 1.28E-16 T 06-07-2017 CDO28_RS19135 c38b879a52e49a932dcc0cdd1395adfc 257 SMART SM00052 2 243 4.3E-17 T 06-07-2017 IPR001633 EAL domain CDO28_RS19135 c38b879a52e49a932dcc0cdd1395adfc 257 Pfam PF00563 EAL domain 9 238 1.3E-38 T 06-07-2017 IPR001633 EAL domain CDO28_RS19135 c38b879a52e49a932dcc0cdd1395adfc 257 SUPERFAMILY SSF141868 10 241 7.06E-44 T 06-07-2017 IPR001633 EAL domain CDO28_RS19135 c38b879a52e49a932dcc0cdd1395adfc 257 Gene3D G3DSA:3.20.20.450 9 239 5.5E-40 T 06-07-2017 IPR001633 EAL domain CDO28_RS17590 23787e29c12c1d3baf3741dfd957cad4 388 Pfam PF13433 Periplasmic binding protein domain 9 368 1.7E-104 T 06-07-2017 CDO28_RS17590 23787e29c12c1d3baf3741dfd957cad4 388 Gene3D G3DSA:3.40.50.2300 123 307 1.1E-46 T 06-07-2017 CDO28_RS17590 23787e29c12c1d3baf3741dfd957cad4 388 SUPERFAMILY SSF53822 8 368 6.39E-66 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS11355 af2c2a04a7d0cef02b50d4aa9e5d8aa7 259 Pfam PF00005 ABC transporter 32 185 7.7E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11355 af2c2a04a7d0cef02b50d4aa9e5d8aa7 259 SUPERFAMILY SSF52540 18 237 8.58E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11355 af2c2a04a7d0cef02b50d4aa9e5d8aa7 259 SMART SM00382 41 233 9.5E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11355 af2c2a04a7d0cef02b50d4aa9e5d8aa7 259 Gene3D G3DSA:3.40.50.300 18 237 4.3E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 Gene3D G3DSA:3.40.50.720 6 237 8.0E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 SUPERFAMILY SSF51735 9 238 7.69E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.3E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.3E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.3E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.3E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.3E-22 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.3E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 3.3E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 3.3E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29605 72f1875e842d12d37194f037e9528d70 258 Pfam PF00106 short chain dehydrogenase 12 205 2.3E-46 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS02605 ef4b656d67c467ef92585fa0cc0d753c 326 Pfam PF04314 Protein of unknown function (DUF461) 200 306 6.7E-38 T 06-07-2017 IPR007410 DR1885-like metal-binding protein CDO28_RS02605 ef4b656d67c467ef92585fa0cc0d753c 326 SUPERFAMILY SSF110087 192 316 2.22E-43 T 06-07-2017 IPR007410 DR1885-like metal-binding protein CDO28_RS02605 ef4b656d67c467ef92585fa0cc0d753c 326 Pfam PF07987 Domain of unkown function (DUF1775) 24 170 1.5E-45 T 06-07-2017 IPR012533 GLE1, N-terminal, bacteria CDO28_RS02605 ef4b656d67c467ef92585fa0cc0d753c 326 PIRSF PIRSF037139 1 326 2.6E-187 T 06-07-2017 IPR021174 Uncharacterised conserved protein UCP037139 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 06-07-2017 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 Pfam PF01081 KDPG and KHG aldolase 10 203 1.3E-69 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 Gene3D G3DSA:3.20.20.70 3 209 4.9E-76 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 209 1.0E-74 T 06-07-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 06-07-2017 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CDO28_RS12685 9362256613b65158fb92b9032d422c84 212 SUPERFAMILY SSF51569 5 209 3.48E-67 T 06-07-2017 CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 SUPERFAMILY SSF51735 8 254 2.6E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 Gene3D G3DSA:3.40.50.720 6 254 1.9E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 253 1.0E-51 T 06-07-2017 CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10875 ecb5abba7008614c6118342179c9ca8f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.6E-32 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31935 4307c1266ef2992924eaba8e057b0e12 402 Pfam PF07690 Major Facilitator Superfamily 16 272 4.6E-32 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS31935 4307c1266ef2992924eaba8e057b0e12 402 Gene3D G3DSA:1.20.1250.20 211 396 6.4E-23 T 06-07-2017 CDO28_RS31935 4307c1266ef2992924eaba8e057b0e12 402 Gene3D G3DSA:1.20.1250.20 5 189 1.9E-27 T 06-07-2017 CDO28_RS31935 4307c1266ef2992924eaba8e057b0e12 402 SUPERFAMILY SSF103473 5 396 4.45E-66 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 SUPERFAMILY SSF52540 256 487 6.12E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 SMART SM00382 281 474 2.0E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 SMART SM00382 32 221 7.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 Gene3D G3DSA:3.40.50.300 270 492 6.1E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 Gene3D G3DSA:3.40.50.300 5 232 4.8E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 SUPERFAMILY SSF52540 6 231 7.58E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 Pfam PF00005 ABC transporter 272 425 7.9E-15 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14450 79d160acf1020efffd0481050566c73c 494 Pfam PF00005 ABC transporter 23 173 1.1E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 14 153 27.86 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 Pfam PF12838 4Fe-4S dicluster domain 67 121 1.7E-9 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 Gene3D G3DSA:3.30.70.20 65 125 5.7E-16 T 06-07-2017 CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 23 145 3.6E-51 T 06-07-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 107 118 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS24720 c7d32596876fd8e8e5cac8823608e668 188 SUPERFAMILY SSF54862 45 147 3.47E-21 T 06-07-2017 CDO28_RS28855 b71a590bf7aa92f0803deb48bd75eed5 398 Pfam PF00872 Transposase, Mutator family 1 377 1.4E-158 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS28855 b71a590bf7aa92f0803deb48bd75eed5 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS29620 b71a590bf7aa92f0803deb48bd75eed5 398 Pfam PF00872 Transposase, Mutator family 1 377 1.4E-158 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS29620 b71a590bf7aa92f0803deb48bd75eed5 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS08395 9615f0f12586b41c3ea5d1d59f6f4c0c 47 Gene3D G3DSA:1.10.10.10 1 44 3.7E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08395 9615f0f12586b41c3ea5d1d59f6f4c0c 47 SUPERFAMILY SSF46785 1 43 1.22E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08395 9615f0f12586b41c3ea5d1d59f6f4c0c 47 Pfam PF01638 HxlR-like helix-turn-helix 1 31 1.3E-6 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS16225 d651836e7a586088947f0c0e2eba1cc2 278 Pfam PF14486 Domain of unknown function (DUF4432) 53 277 7.3E-30 T 06-07-2017 IPR027839 Protein of unknown function DUF4432 CDO28_RS05115 9e0b5e7158662a0ee479bb32e42eea9f 418 PIRSF PIRSF003085 2 401 5.9E-127 T 06-07-2017 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 CDO28_RS05115 9e0b5e7158662a0ee479bb32e42eea9f 418 Gene3D G3DSA:3.40.50.150 117 381 7.8E-90 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05115 9e0b5e7158662a0ee479bb32e42eea9f 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 116 379 9.6E-89 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05115 9e0b5e7158662a0ee479bb32e42eea9f 418 SUPERFAMILY SSF53335 123 380 1.49E-74 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS20455 db6d3ae903275e29060ba8407169ac43 569 Pfam PF03814 Potassium-transporting ATPase A subunit 11 561 1.2E-234 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDO28_RS20455 db6d3ae903275e29060ba8407169ac43 569 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 562 9.8E-225 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDO28_RS20455 db6d3ae903275e29060ba8407169ac43 569 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 563 35.135 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDO28_RS20455 db6d3ae903275e29060ba8407169ac43 569 PIRSF PIRSF001294 1 565 5.4E-240 T 06-07-2017 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 SUPERFAMILY SSF53067 246 310 1.46E-5 T 06-07-2017 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 SUPERFAMILY SSF53067 341 437 1.46E-5 T 06-07-2017 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 SUPERFAMILY SSF53067 13 95 1.46E-5 T 06-07-2017 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 SUPERFAMILY SSF53067 12 245 4.53E-13 T 06-07-2017 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 133 245 1.8E-10 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS32940 835ee02b9ed3f779146b3d9fde6c1ade 490 Gene3D G3DSA:3.30.420.40 137 246 6.3E-4 T 06-07-2017 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 Gene3D G3DSA:3.75.10.10 7 74 1.7E-124 T 06-07-2017 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 Gene3D G3DSA:3.75.10.10 160 418 1.7E-124 T 06-07-2017 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 TIGRFAM TIGR01078 arcA: arginine deiminase 13 417 1.1E-148 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 160 178 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 188 203 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 9 29 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 373 387 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 353 370 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PRINTS PR01466 Bacterial arginine deiminase signature 396 414 5.0E-47 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 SUPERFAMILY SSF55909 10 417 5.35E-133 T 06-07-2017 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 Hamap MF_00242 Arginine deiminase [arcA]. 8 417 47.097 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 Pfam PF02274 Amidinotransferase 25 414 4.9E-98 T 06-07-2017 CDO28_RS25080 8bf72fd2374cdcfd9f578ace2eceace3 419 PIRSF PIRSF006356 1 417 5.6E-135 T 06-07-2017 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CDO28_RS14050 47e359901c206e0b568bf58cee20c757 285 Gene3D G3DSA:3.60.110.10 2 276 5.8E-83 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS14050 47e359901c206e0b568bf58cee20c757 285 Pfam PF00795 Carbon-nitrogen hydrolase 4 258 3.6E-54 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS14050 47e359901c206e0b568bf58cee20c757 285 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 151 171 - T 06-07-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site CDO28_RS14050 47e359901c206e0b568bf58cee20c757 285 SUPERFAMILY SSF56317 2 265 3.66E-80 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05658 Head domain of trimeric autotransporter adhesin 335 358 6.8E-5 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05658 Head domain of trimeric autotransporter adhesin 205 228 6.0E-6 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05658 Head domain of trimeric autotransporter adhesin 346 372 3.4E-4 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05658 Head domain of trimeric autotransporter adhesin 97 118 1.7E-5 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05658 Head domain of trimeric autotransporter adhesin 296 320 1.1E-4 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 SUPERFAMILY SSF101967 456 580 9.42E-24 T 06-07-2017 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 SUPERFAMILY SSF101967 607 649 9.42E-24 T 06-07-2017 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 SUPERFAMILY SSF101967 95 277 1.31E-11 T 06-07-2017 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 625 645 4.2E-7 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Gene3D G3DSA:2.150.10.10 279 436 9.3E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Gene3D G3DSA:2.150.10.10 455 648 1.0E-29 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Gene3D G3DSA:2.150.10.10 1 73 1.8E-7 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 Gene3D G3DSA:2.150.10.10 96 194 1.2E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS08230 ba1051b7edc6deb343b258e4536d0eac 766 SUPERFAMILY SSF101967 2 73 2.09E-7 T 06-07-2017 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 13 409 7.0E-102 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 SUPERFAMILY SSF53187 339 410 1.02E-86 T 06-07-2017 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 SUPERFAMILY SSF53187 6 225 1.02E-86 T 06-07-2017 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 Pfam PF01546 Peptidase family M20/M25/M40 82 408 3.9E-34 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 Gene3D G3DSA:3.30.70.360 230 327 1.5E-22 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 Gene3D G3DSA:3.40.630.10 354 412 6.0E-103 T 06-07-2017 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 Gene3D G3DSA:3.40.630.10 5 229 6.0E-103 T 06-07-2017 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 PIRSF PIRSF001235 6 414 1.7E-115 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS29025 9f62d33c19ebbabe2ed278ac2199163d 414 SUPERFAMILY SSF55031 219 328 5.41E-19 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS01190 d0a0b5e26d69249436c3f1e97ba0ea4d 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 43.027 T 06-07-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CDO28_RS01190 d0a0b5e26d69249436c3f1e97ba0ea4d 199 Pfam PF03358 NADPH-dependent FMN reductase 13 142 2.2E-12 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS01190 d0a0b5e26d69249436c3f1e97ba0ea4d 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 197 1.4E-105 T 06-07-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CDO28_RS01190 d0a0b5e26d69249436c3f1e97ba0ea4d 199 Gene3D G3DSA:3.40.50.360 2 198 9.0E-75 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS01190 d0a0b5e26d69249436c3f1e97ba0ea4d 199 SUPERFAMILY SSF52218 3 197 2.1E-60 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 Pfam PF01565 FAD binding domain 55 190 1.4E-31 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 Gene3D G3DSA:3.30.465.10 113 220 4.3E-18 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 SUPERFAMILY SSF55103 384 464 8.72E-6 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 SUPERFAMILY SSF55103 185 260 8.72E-6 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 55 88 - T 06-07-2017 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 Pfam PF08031 Berberine and berberine like 427 471 9.3E-16 T 06-07-2017 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 Gene3D G3DSA:3.30.43.10 41 112 5.5E-15 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS28920 8fc000cfc9dce675fe9ea8dba0185867 479 SUPERFAMILY SSF56176 13 220 4.58E-56 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 154 164 - T 06-07-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 SMART SM00929 92 132 4.9E-22 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Gene3D G3DSA:3.40.50.740 519 632 8.9E-44 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Gene3D G3DSA:3.40.50.740 379 416 8.9E-44 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Gene3D G3DSA:3.40.50.740 280 347 8.9E-44 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 SUPERFAMILY SSF54292 1 67 1.07E-16 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 92 131 7.2E-18 T 06-07-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 601 7.9E-220 T 06-07-2017 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 SUPERFAMILY SSF54862 85 220 7.95E-38 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 SUPERFAMILY SSF53706 222 631 6.41E-96 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Gene3D G3DSA:3.10.20.30 4 58 3.3E-7 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 69 1.1E-10 T 06-07-2017 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Gene3D G3DSA:3.40.50.1220 441 518 2.3E-5 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Pfam PF00384 Molybdopterin oxidoreductase 280 603 1.2E-65 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 107 119 - T 06-07-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04095 a84463fd2b658b4429efc2a87b53e78f 693 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 638 680 3.3E-15 T 06-07-2017 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS06810 74ad3fc16de1926591fdd63dc2a1c168 245 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 29 227 29.473 T 06-07-2017 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 CDO28_RS06810 74ad3fc16de1926591fdd63dc2a1c168 245 SUPERFAMILY SSF53335 23 231 1.07E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06810 74ad3fc16de1926591fdd63dc2a1c168 245 PIRSF PIRSF005461 15 239 1.9E-69 T 06-07-2017 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 CDO28_RS06810 74ad3fc16de1926591fdd63dc2a1c168 245 Gene3D G3DSA:3.40.50.150 10 229 2.3E-69 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06810 74ad3fc16de1926591fdd63dc2a1c168 245 Pfam PF01728 FtsJ-like methyltransferase 49 227 5.5E-53 T 06-07-2017 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CDO28_RS09580 52e5a5b5f09d0af3f82ac81436f04e0b 245 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 4 239 37.231 T 06-07-2017 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 CDO28_RS09580 52e5a5b5f09d0af3f82ac81436f04e0b 245 SUPERFAMILY SSF110395 5 239 2.35E-60 T 06-07-2017 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 CDO28_RS09580 52e5a5b5f09d0af3f82ac81436f04e0b 245 Pfam PF03932 CutC family 5 202 1.1E-68 T 06-07-2017 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 CDO28_RS09580 52e5a5b5f09d0af3f82ac81436f04e0b 245 Gene3D G3DSA:3.20.20.380 4 239 2.7E-77 T 06-07-2017 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 SUPERFAMILY SSF52374 1 280 1.28E-102 T 06-07-2017 CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 1.3E-97 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 8.2E-100 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 Gene3D G3DSA:3.30.1300.10 175 283 8.4E-26 T 06-07-2017 CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 Gene3D G3DSA:3.40.50.620 1 174 7.7E-78 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS16465 8a58e6066d7f4cf364aba4dd0f92b86e 291 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.668 T 06-07-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDO28_RS13080 7ff033f7a1f7c5eaf69b1320548b8335 295 Gene3D G3DSA:3.90.550.10 8 274 5.8E-62 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS13080 7ff033f7a1f7c5eaf69b1320548b8335 295 Pfam PF00483 Nucleotidyl transferase 14 269 2.2E-21 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS13080 7ff033f7a1f7c5eaf69b1320548b8335 295 SUPERFAMILY SSF53448 7 276 2.48E-58 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS13080 7ff033f7a1f7c5eaf69b1320548b8335 295 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 7 267 1.4E-101 T 06-07-2017 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 155 172 - T 06-07-2017 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 270 31.41 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 SUPERFAMILY SSF55347 131 241 3.27E-32 T 06-07-2017 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 Gene3D G3DSA:3.40.50.720 5 168 3.3E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 269 1.6E-38 T 06-07-2017 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 SUPERFAMILY SSF51735 5 130 1.55E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 SUPERFAMILY SSF51735 241 271 1.55E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 2.5E-33 T 06-07-2017 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 PIRSF PIRSF000161 4 272 1.1E-73 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS09785 0cab075661bcaa7d36ba89098909a0ee 272 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 270 2.2E-75 T 06-07-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS31965 079ea710695dba8dafcd010e2f51956f 447 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS31965 079ea710695dba8dafcd010e2f51956f 447 Pfam PF00202 Aminotransferase class-III 15 434 4.2E-105 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS31965 079ea710695dba8dafcd010e2f51956f 447 Gene3D G3DSA:3.40.640.10 48 310 2.0E-88 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS31965 079ea710695dba8dafcd010e2f51956f 447 Gene3D G3DSA:3.90.1150.10 311 437 2.4E-36 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS31965 079ea710695dba8dafcd010e2f51956f 447 SUPERFAMILY SSF53383 11 435 1.39E-124 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS15305 b61f6193c291a1ce15106a1bdb522b1e 129 Gene3D G3DSA:3.30.70.1350 45 121 6.5E-23 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain CDO28_RS15305 b61f6193c291a1ce15106a1bdb522b1e 129 SUPERFAMILY SSF160240 48 121 1.57E-18 T 06-07-2017 CDO28_RS15305 b61f6193c291a1ce15106a1bdb522b1e 129 SUPERFAMILY SSF161111 1 45 2.88E-5 T 06-07-2017 CDO28_RS15305 b61f6193c291a1ce15106a1bdb522b1e 129 Pfam PF16916 Dimerisation domain of Zinc Transporter 50 117 3.0E-20 T 06-07-2017 IPR027470 Cation efflux protein, cytoplasmic domain CDO28_RS22620 25bd75b143033c584500e60f23694983 226 SMART SM00100 19 139 2.5E-14 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS22620 25bd75b143033c584500e60f23694983 226 Pfam PF13545 Crp-like helix-turn-helix domain 156 226 2.4E-13 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22620 25bd75b143033c584500e60f23694983 226 Pfam PF00027 Cyclic nucleotide-binding domain 39 122 1.1E-18 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS22620 25bd75b143033c584500e60f23694983 226 SMART SM00419 172 219 1.0E-4 T 06-07-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDO28_RS22620 25bd75b143033c584500e60f23694983 226 SUPERFAMILY SSF46785 153 225 3.46E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22620 25bd75b143033c584500e60f23694983 226 Gene3D G3DSA:1.10.10.10 153 225 3.1E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22620 25bd75b143033c584500e60f23694983 226 Gene3D G3DSA:2.60.120.10 18 147 1.1E-27 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS22620 25bd75b143033c584500e60f23694983 226 SUPERFAMILY SSF51206 18 146 1.96E-27 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Gene3D G3DSA:1.20.58.220 330 419 7.2E-9 T 06-07-2017 CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Gene3D G3DSA:1.20.58.220 442 529 8.5E-9 T 06-07-2017 CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 70 521 2.9E-100 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Pfam PF01895 PhoU domain 342 420 6.6E-8 T 06-07-2017 IPR026022 PhoU domain CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Pfam PF01895 PhoU domain 445 528 3.6E-8 T 06-07-2017 IPR026022 PhoU domain CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 SUPERFAMILY SSF109755 329 532 5.55E-34 T 06-07-2017 CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Pfam PF02690 Na+/Pi-cotransporter 16 150 8.0E-30 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS31370 2825292d5ff1a390a5bf5a5d77640c8c 547 Pfam PF02690 Na+/Pi-cotransporter 161 251 9.5E-7 T 06-07-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CDO28_RS13070 233adc133c8201f78e68f9dccfb69b0f 420 Pfam PF04311 Protein of unknown function (DUF459) 100 367 5.0E-89 T 06-07-2017 IPR007407 Protein of unknown function DUF459 CDO28_RS13070 233adc133c8201f78e68f9dccfb69b0f 420 Gene3D G3DSA:3.40.50.1110 167 325 9.2E-14 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS13070 233adc133c8201f78e68f9dccfb69b0f 420 SUPERFAMILY SSF52266 110 324 1.28E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 3 315 7.3E-77 T 06-07-2017 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 SUPERFAMILY SSF54373 186 275 9.03E-20 T 06-07-2017 CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 SUPERFAMILY SSF51971 1 201 5.77E-24 T 06-07-2017 CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 SUPERFAMILY SSF51971 262 317 5.77E-24 T 06-07-2017 CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 Pfam PF01266 FAD dependent oxidoreductase 3 312 2.0E-38 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 Gene3D G3DSA:3.40.50.720 1 78 1.3E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 Gene3D G3DSA:3.40.50.720 271 318 1.3E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 Gene3D G3DSA:3.40.50.720 133 179 1.3E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30375 ad8c08f2d20a95f205390ea029a18079 325 Gene3D G3DSA:3.30.9.10 180 270 7.9E-19 T 06-07-2017 CDO28_RS10225 b7b1c8cc64750201bfb094b97d523aa2 222 SUPERFAMILY SSF100950 41 221 5.44E-45 T 06-07-2017 CDO28_RS10225 b7b1c8cc64750201bfb094b97d523aa2 222 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 44 216 9.5E-47 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDO28_RS10225 b7b1c8cc64750201bfb094b97d523aa2 222 Gene3D G3DSA:3.40.50.10420 45 219 1.1E-44 T 06-07-2017 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain CDO28_RS10225 b7b1c8cc64750201bfb094b97d523aa2 222 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 44 216 2.6E-27 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.70.270 651 817 1.9E-54 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55073 655 810 2.39E-48 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.450.20 381 507 9.5E-25 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55785 515 630 2.09E-13 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00091 395 462 0.0045 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00091 269 335 1.6E-12 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00091 528 593 1.3E-7 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00091 143 209 8.2E-5 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00091 15 81 1.2E-8 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00086 87 131 170.0 T 06-07-2017 IPR001610 PAC motif CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00086 215 257 2.0E-7 T 06-07-2017 IPR001610 PAC motif CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00086 341 383 3.2E-10 T 06-07-2017 IPR001610 PAC motif CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00086 467 509 8.8 T 06-07-2017 IPR001610 PAC motif CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00267 639 809 3.3E-59 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55785 128 254 1.26E-26 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF141868 827 1066 1.57E-86 T 06-07-2017 IPR001633 EAL domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF08447 PAS fold 293 376 1.0E-17 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF08447 PAS fold 166 250 4.9E-21 T 06-07-2017 IPR013655 PAS fold-3 GO:0005515 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.450.20 259 380 1.4E-34 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.450.20 133 254 7.7E-32 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 265 387 1.8E-27 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 392 515 1.1E-14 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 138 6.2E-13 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 262 4.7E-17 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 528 638 4.0E-9 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 647 808 3.3E-40 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55785 254 381 2.58E-32 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55785 12 129 6.15E-19 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SUPERFAMILY SSF55785 380 507 1.41E-23 T 06-07-2017 IPR000014 PAS domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 SMART SM00052 819 1061 2.8E-115 T 06-07-2017 IPR001633 EAL domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.450.20 12 129 2.5E-18 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.30.450.20 518 632 2.4E-22 T 06-07-2017 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Gene3D G3DSA:3.20.20.450 824 1067 2.4E-96 T 06-07-2017 IPR001633 EAL domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF00563 EAL domain 827 1056 8.2E-69 T 06-07-2017 IPR001633 EAL domain CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF08448 PAS fold 23 133 5.3E-15 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF08448 PAS fold 401 511 1.1E-14 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF08448 PAS fold 534 634 1.1E-14 T 06-07-2017 IPR013656 PAS fold-4 CDO28_RS24805 e933f057a76fb4ae630526e76a3eab90 1071 Pfam PF00990 Diguanylate cyclase, GGDEF domain 650 804 8.7E-47 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS15350 6ee24e7e8a58720c8b8a891da44f55a3 300 Pfam PF00149 Calcineurin-like phosphoesterase 2 230 5.2E-12 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS15350 6ee24e7e8a58720c8b8a891da44f55a3 300 SUPERFAMILY SSF56300 2 280 3.54E-38 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS15350 6ee24e7e8a58720c8b8a891da44f55a3 300 Gene3D G3DSA:3.60.21.10 1 233 6.2E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SMART SM00091 136 202 5.9E-13 T 06-07-2017 IPR000014 PAS domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 132 259 9.3E-35 T 06-07-2017 IPR000014 PAS domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SUPERFAMILY SSF55785 147 261 2.09E-26 T 06-07-2017 IPR000014 PAS domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SUPERFAMILY SSF55874 333 496 6.68E-37 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SUPERFAMILY SSF47384 269 340 1.9E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Gene3D G3DSA:3.30.565.10 349 493 6.9E-38 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SMART SM00388 274 345 3.4E-7 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Pfam PF00512 His Kinase A (phospho-acceptor) domain 275 343 1.8E-10 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 494 4.7E-22 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Gene3D G3DSA:3.30.450.20 126 250 3.9E-27 T 06-07-2017 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Pfam PF00989 PAS fold 137 248 9.7E-21 T 06-07-2017 IPR013767 PAS fold GO:0006355 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 SMART SM00387 387 496 1.4E-34 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 Gene3D G3DSA:1.10.287.130 272 339 5.6E-5 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 455 7.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 474 7.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 441 7.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS22555 c848a5c23a4c152f00c9439a26579c91 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 493 7.1E-18 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS06595 b62d1527a6b0037dbfedb03962435c57 159 Gene3D G3DSA:3.40.630.30 1 157 3.3E-62 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS06595 b62d1527a6b0037dbfedb03962435c57 159 Pfam PF00583 Acetyltransferase (GNAT) family 57 137 4.7E-18 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS06595 b62d1527a6b0037dbfedb03962435c57 159 SUPERFAMILY SSF55729 3 150 1.42E-37 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 SUPERFAMILY SSF47648 6 70 9.42E-19 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 Gene3D G3DSA:3.40.1030.10 73 335 5.7E-104 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 333 37.28 T 06-07-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 Pfam PF00591 Glycosyl transferase family, a/b domain 76 323 1.4E-94 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 65 8.5E-20 T 06-07-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 331 1.1E-116 T 06-07-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 SUPERFAMILY SSF52418 74 331 1.2E-91 T 06-07-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDO28_RS01055 eec44ffbd04621ca946a7be3325ab73f 337 Gene3D G3DSA:1.20.970.10 6 71 2.9E-25 T 06-07-2017 CDO28_RS13175 4fcecd5dabf6b77dc30ed011fe59cb49 204 Gene3D G3DSA:1.25.40.10 86 199 6.2E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13175 4fcecd5dabf6b77dc30ed011fe59cb49 204 SUPERFAMILY SSF48452 83 199 8.07E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13175 4fcecd5dabf6b77dc30ed011fe59cb49 204 SMART SM00028 84 117 110.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13175 4fcecd5dabf6b77dc30ed011fe59cb49 204 SMART SM00028 118 151 0.0017 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13175 4fcecd5dabf6b77dc30ed011fe59cb49 204 SMART SM00028 152 185 42.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS01845 b070cc54985b2cfd38894d687e61fd9c 336 Gene3D G3DSA:3.90.1530.10 59 142 2.4E-10 T 06-07-2017 CDO28_RS01845 b070cc54985b2cfd38894d687e61fd9c 336 SUPERFAMILY SSF110849 56 142 1.48E-10 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS01845 b070cc54985b2cfd38894d687e61fd9c 336 SMART SM00470 58 150 0.0093 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS01845 b070cc54985b2cfd38894d687e61fd9c 336 Pfam PF02195 ParB-like nuclease domain 60 143 2.6E-9 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 Gene3D G3DSA:2.60.40.420 116 274 3.1E-56 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 37 261 1.8E-60 T 06-07-2017 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 197 245 - T 06-07-2017 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 86 98 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 172 193 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 121 140 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 118 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 196 216 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 216 233 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 234 251 6.8E-51 T 06-07-2017 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 125 252 9.9E-48 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 SUPERFAMILY SSF49503 122 264 2.77E-52 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 26 112 5.9E-25 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 SUPERFAMILY SSF81464 17 114 6.54E-27 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06050 97f6826951cb2fc98492d0dbe363a96a 294 Gene3D G3DSA:1.10.287.90 28 115 3.5E-27 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS28640 acd702b05e10599ce97a257524872fda 238 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 116 237 1.2E-42 T 06-07-2017 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 CDO28_RS28640 acd702b05e10599ce97a257524872fda 238 Gene3D G3DSA:3.40.50.150 17 237 1.9E-75 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS32880 ff0169da9edc6e3ba8e251c080de03c4 315 Gene3D G3DSA:1.10.3720.10 88 311 3.5E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32880 ff0169da9edc6e3ba8e251c080de03c4 315 SUPERFAMILY SSF161098 91 299 3.6E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32880 ff0169da9edc6e3ba8e251c080de03c4 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 314 1.7E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04965 4f4e8b1765643b56889349c23901271d 256 SUPERFAMILY SSF143081 2 231 1.96E-67 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS04965 4f4e8b1765643b56889349c23901271d 256 Gene3D G3DSA:3.90.1680.10 1 231 4.2E-65 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS04965 4f4e8b1765643b56889349c23901271d 256 Pfam PF02586 SOS response associated peptidase (SRAP) 1 221 9.4E-60 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS31795 8b714752103fa117bdb97a8ae979e0a7 373 SUPERFAMILY SSF51735 24 355 9.23E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31795 8b714752103fa117bdb97a8ae979e0a7 373 Gene3D G3DSA:3.40.50.720 23 221 4.6E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31795 8b714752103fa117bdb97a8ae979e0a7 373 Gene3D G3DSA:3.90.25.10 222 357 2.8E-25 T 06-07-2017 CDO28_RS31795 8b714752103fa117bdb97a8ae979e0a7 373 Pfam PF01370 NAD dependent epimerase/dehydratase family 24 285 4.3E-51 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS17825 1744a2933e8df5705d1065900836e918 228 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 27 227 9.9E-56 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS17825 1744a2933e8df5705d1065900836e918 228 SUPERFAMILY SSF56529 22 228 7.85E-74 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS17825 1744a2933e8df5705d1065900836e918 228 Gene3D G3DSA:3.90.850.10 22 228 2.5E-83 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS07045 ab596de3399cd057981df71cdf6bfd26 303 Gene3D G3DSA:1.10.3720.10 7 292 1.5E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07045 ab596de3399cd057981df71cdf6bfd26 303 SUPERFAMILY SSF161098 63 293 7.66E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07045 ab596de3399cd057981df71cdf6bfd26 303 SUPERFAMILY SSF161098 10 33 7.66E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07045 ab596de3399cd057981df71cdf6bfd26 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 290 1.8E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10980 cdaede7e2efa05218d51e93e4e4c95e8 379 Gene3D G3DSA:1.20.1250.20 5 184 1.1E-21 T 06-07-2017 CDO28_RS10980 cdaede7e2efa05218d51e93e4e4c95e8 379 SUPERFAMILY SSF103473 6 368 1.57E-47 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS10980 cdaede7e2efa05218d51e93e4e4c95e8 379 Gene3D G3DSA:1.20.1250.20 196 367 1.0E-16 T 06-07-2017 CDO28_RS10980 cdaede7e2efa05218d51e93e4e4c95e8 379 Pfam PF07690 Major Facilitator Superfamily 10 314 2.2E-23 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS20055 b2db65cd491bdb66621ec1e2bc17b0eb 205 Pfam PF04191 Phospholipid methyltransferase 43 133 7.1E-10 T 06-07-2017 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 SUPERFAMILY SSF102645 185 399 5.49E-72 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 393 2.4E-123 T 06-07-2017 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 187 371 3.7E-68 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 Pfam PF02441 Flavoprotein 6 134 5.4E-34 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 SUPERFAMILY SSF52507 3 181 1.01E-59 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 Gene3D G3DSA:3.40.50.1950 3 187 2.2E-63 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS08765 8d164e2dac6bf5188f322a39ffc2df76 401 Gene3D G3DSA:3.40.50.10300 188 399 7.5E-81 T 06-07-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 06-07-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 185 5.2E-41 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 SMART SM00855 4 165 3.2E-24 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 204 37.577 T 06-07-2017 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 PIRSF PIRSF000709 2 204 7.9E-8 T 06-07-2017 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 SUPERFAMILY SSF53254 1 208 9.55E-66 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 Gene3D G3DSA:3.40.50.1240 2 207 3.4E-76 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 123 208 1.5E-24 T 06-07-2017 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CDO28_RS09780 085aaac53db82f04b4c3eecaeb864366 211 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 123 3.0E-49 T 06-07-2017 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CDO28_RS24275 5838279d905eaeedb450c7b915b0ac0b 124 Gene3D G3DSA:3.10.180.10 1 120 1.3E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS24275 5838279d905eaeedb450c7b915b0ac0b 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 117 4.6E-8 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS24275 5838279d905eaeedb450c7b915b0ac0b 124 SUPERFAMILY SSF54593 2 121 4.83E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 SMART SM01001 7 158 2.2E-103 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 Pfam PF00731 AIR carboxylase 9 155 1.6E-63 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 9 162 32.596 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 SUPERFAMILY SSF52255 6 163 6.15E-67 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 PIRSF PIRSF001338 4 165 1.2E-65 T 06-07-2017 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 Gene3D G3DSA:3.40.50.7700 5 160 1.8E-73 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS13190 9262b65dd293cbed3a48b76c0e839d84 166 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 9 160 5.0E-65 T 06-07-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 Pfam PF00202 Aminotransferase class-III 21 441 1.0E-105 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 SUPERFAMILY SSF53383 13 443 5.7E-117 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 Gene3D G3DSA:3.90.1150.10 347 444 1.2E-40 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 Gene3D G3DSA:3.90.1150.10 14 64 1.2E-40 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 Gene3D G3DSA:3.40.640.10 66 345 5.3E-82 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS10890 496782ff32916aa643ce4b5542205bd4 445 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 255 292 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS09815 c2ba68bc639a871109af6b4e06645c5f 360 SUPERFAMILY SSF161098 122 338 5.89E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09815 c2ba68bc639a871109af6b4e06645c5f 360 Gene3D G3DSA:1.10.3720.10 122 351 3.1E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09815 c2ba68bc639a871109af6b4e06645c5f 360 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 146 353 5.7E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06060 89e7844e1c8e3fa64f4081142bc6dff8 176 Pfam PF06776 Invasion associated locus B (IalB) protein 42 175 1.8E-37 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS03380 e80a4c05fbc31907cf5f02344b6d26fa 128 SMART SM00422 5 72 1.3E-15 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS03380 e80a4c05fbc31907cf5f02344b6d26fa 128 Gene3D G3DSA:1.10.1660.10 58 119 4.6E-12 T 06-07-2017 CDO28_RS03380 e80a4c05fbc31907cf5f02344b6d26fa 128 SUPERFAMILY SSF46955 3 114 1.47E-24 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS03380 e80a4c05fbc31907cf5f02344b6d26fa 128 Gene3D G3DSA:1.10.1660.10 2 57 1.0E-20 T 06-07-2017 CDO28_RS03380 e80a4c05fbc31907cf5f02344b6d26fa 128 Pfam PF13411 MerR HTH family regulatory protein 5 70 1.9E-17 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS28675 29561c6bbf5aebd45783317661b4cdcd 306 SUPERFAMILY SSF103481 37 139 4.45E-10 T 06-07-2017 CDO28_RS28675 29561c6bbf5aebd45783317661b4cdcd 306 Pfam PF00892 EamA-like transporter family 9 136 3.4E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS28675 29561c6bbf5aebd45783317661b4cdcd 306 Pfam PF00892 EamA-like transporter family 162 287 2.8E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS28675 29561c6bbf5aebd45783317661b4cdcd 306 SUPERFAMILY SSF103481 193 289 3.53E-12 T 06-07-2017 CDO28_RS13360 6477b9ef20cc524f38623900200f5888 329 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 322 6.5E-131 T 06-07-2017 IPR019949 Luciferase family oxidoreductase, group 1 CDO28_RS13360 6477b9ef20cc524f38623900200f5888 329 SUPERFAMILY SSF51679 2 323 5.89E-88 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS13360 6477b9ef20cc524f38623900200f5888 329 Pfam PF00296 Luciferase-like monooxygenase 20 297 9.2E-36 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS13360 6477b9ef20cc524f38623900200f5888 329 Gene3D G3DSA:3.20.20.30 3 323 1.2E-91 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS28090 d4abbbf7ce88186562fb944b1e8b495d 421 Pfam PF02563 Polysaccharide biosynthesis/export protein 38 123 6.5E-14 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDO28_RS28090 d4abbbf7ce88186562fb944b1e8b495d 421 Gene3D G3DSA:3.30.1950.10 47 121 2.1E-13 T 06-07-2017 CDO28_RS28090 d4abbbf7ce88186562fb944b1e8b495d 421 Gene3D G3DSA:3.10.560.10 122 164 1.2E-4 T 06-07-2017 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 SUPERFAMILY SSF53067 149 346 2.98E-16 T 06-07-2017 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 SUPERFAMILY SSF53067 74 119 2.98E-16 T 06-07-2017 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 SUPERFAMILY SSF53067 8 38 2.98E-16 T 06-07-2017 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 5 375 34.537 T 06-07-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 Gene3D G3DSA:3.30.420.40 6 208 4.5E-64 T 06-07-2017 CDO28_RS00580 48fa81606a4456788747d99e38de4bee 383 Pfam PF03702 Uncharacterised protein family (UPF0075) 7 370 6.2E-83 T 06-07-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 SUPERFAMILY SSF46785 27 96 2.99E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 Pfam PF04079 Segregation and condensation complex subunit ScpB 31 184 4.3E-46 T 06-07-2017 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 SUPERFAMILY SSF46785 103 176 6.82E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 Gene3D G3DSA:1.10.10.10 26 95 3.6E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 31 188 7.3E-29 T 06-07-2017 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CDO28_RS02730 5df7a05afef3fadbe28af30e8b53a83e 239 Gene3D G3DSA:1.10.10.10 101 176 2.9E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08040 f753fac316d649dae6dbafe10ff9e78f 300 Gene3D G3DSA:3.40.50.300 20 293 7.4E-106 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08040 f753fac316d649dae6dbafe10ff9e78f 300 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 54 280 3.4E-101 T 06-07-2017 IPR022488 Polyphosphate kinase-2-related CDO28_RS08040 f753fac316d649dae6dbafe10ff9e78f 300 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 54 282 2.1E-111 T 06-07-2017 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 CDO28_RS08040 f753fac316d649dae6dbafe10ff9e78f 300 SUPERFAMILY SSF52540 88 273 2.53E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 Gene3D G3DSA:1.10.3720.10 199 439 2.2E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 Gene3D G3DSA:1.10.3720.10 41 62 2.2E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 240 439 9.7E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 198 437 1.8E-68 T 06-07-2017 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 Pfam PF11812 Domain of unknown function (DUF3333) 23 173 2.1E-56 T 06-07-2017 IPR024573 Domain of unknown function DUF3333 CDO28_RS08020 0d5fb3facce7d18998600618b2ce4a9e 440 SUPERFAMILY SSF161098 216 425 2.35E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11335 4596e36f6f13a018b00fe65362383fb4 151 SUPERFAMILY SSF51206 9 147 1.1E-27 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS11335 4596e36f6f13a018b00fe65362383fb4 151 Gene3D G3DSA:2.60.120.10 5 139 3.1E-26 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS11335 4596e36f6f13a018b00fe65362383fb4 151 SMART SM00100 15 133 4.1E-9 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS11335 4596e36f6f13a018b00fe65362383fb4 151 Pfam PF00027 Cyclic nucleotide-binding domain 33 121 1.5E-17 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS04480 e7cf50a40dd674334e7aecf400baf0c6 259 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 248 42.167 T 06-07-2017 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic CDO28_RS04480 e7cf50a40dd674334e7aecf400baf0c6 259 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 239 4.4E-34 T 06-07-2017 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 CDO28_RS04480 e7cf50a40dd674334e7aecf400baf0c6 259 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 18 87 6.7E-16 T 06-07-2017 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 CDO28_RS04480 e7cf50a40dd674334e7aecf400baf0c6 259 PIRSF PIRSF037208 1 257 1.9E-79 T 06-07-2017 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic CDO28_RS04480 e7cf50a40dd674334e7aecf400baf0c6 259 SUPERFAMILY SSF55729 85 246 5.0E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 Gene3D G3DSA:1.10.10.10 11 97 3.5E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 Gene3D G3DSA:3.30.450.40 191 357 2.3E-33 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 Pfam PF01628 HrcA protein C terminal domain 119 344 2.1E-51 T 06-07-2017 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 16 357 1.2E-96 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 SUPERFAMILY SSF46785 15 96 7.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 PIRSF PIRSF005485 12 359 1.9E-98 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 14 351 28.384 T 06-07-2017 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CDO28_RS08660 a69e3f9b3780b3752eee93db15ccbbf9 359 SUPERFAMILY SSF55781 85 356 1.08E-52 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 SUPERFAMILY SSF51905 117 269 1.26E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 SUPERFAMILY SSF51905 4 56 1.26E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 SUPERFAMILY SSF51905 356 413 1.26E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 124 133 3.3E-5 T 06-07-2017 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 3.3E-5 T 06-07-2017 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 SUPERFAMILY SSF54373 271 356 1.44E-12 T 06-07-2017 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 Gene3D G3DSA:3.50.50.60 356 413 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 Gene3D G3DSA:3.50.50.60 4 60 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 Gene3D G3DSA:3.50.50.60 110 116 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 Gene3D G3DSA:3.50.50.60 187 268 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31910 760debfd203c9f7b813bf538dd41cb5e 413 Pfam PF01266 FAD dependent oxidoreductase 5 395 3.3E-49 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 SUPERFAMILY SSF54427 18 49 1.58E-53 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 SUPERFAMILY SSF54427 80 230 1.58E-53 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 ProDom PD111165 RP434 11 226 4.0E-5 T 06-07-2017 CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 Pfam PF04280 Tim44-like domain 86 230 1.4E-50 T 06-07-2017 IPR007379 Tim44-like domain CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 SMART SM00978 85 231 8.0E-58 T 06-07-2017 IPR007379 Tim44-like domain CDO28_RS10595 c468cdc096eef95c1b2746a35cd4ec39 233 PIRSF PIRSF031890 2 233 2.1E-93 T 06-07-2017 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related CDO28_RS27965 0e10251bfe67025908b4f720325715ce 422 Pfam PF13416 Bacterial extracellular solute-binding protein 43 359 3.8E-30 T 06-07-2017 CDO28_RS27965 0e10251bfe67025908b4f720325715ce 422 Gene3D G3DSA:3.40.190.10 158 350 1.0E-30 T 06-07-2017 CDO28_RS27965 0e10251bfe67025908b4f720325715ce 422 SUPERFAMILY SSF53850 26 418 5.0E-66 T 06-07-2017 CDO28_RS27965 0e10251bfe67025908b4f720325715ce 422 Gene3D G3DSA:3.40.190.10 40 157 5.4E-20 T 06-07-2017 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 SUPERFAMILY SSF50037 211 254 6.41E-6 T 06-07-2017 IPR008988 Transcriptional repressor, C-terminal CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 Gene3D G3DSA:2.30.30.100 209 252 5.8E-9 T 06-07-2017 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 SUPERFAMILY SSF55681 14 204 1.56E-47 T 06-07-2017 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 Pfam PF03099 Biotin/lipoate A/B protein ligase family 44 147 1.4E-10 T 06-07-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 20 252 4.0E-44 T 06-07-2017 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 Gene3D G3DSA:3.30.930.10 10 205 1.4E-53 T 06-07-2017 CDO28_RS04055 7216d1773f83de844c7a95dc5bcc378b 255 Pfam PF02237 Biotin protein ligase C terminal domain 209 255 2.3E-11 T 06-07-2017 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 Gene3D G3DSA:2.30.40.10 321 422 4.6E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 Gene3D G3DSA:3.20.20.140 74 320 1.2E-46 T 06-07-2017 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 SUPERFAMILY SSF51338 369 441 1.38E-20 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 SUPERFAMILY SSF51338 14 68 1.38E-20 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 Gene3D G3DSA:2.30.40.10 13 73 2.7E-9 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 SUPERFAMILY SSF51556 68 369 2.52E-61 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS32020 9268f23bca02a1c1969d5ceeea19baef 466 Pfam PF01979 Amidohydrolase family 65 416 8.3E-36 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS34435 e898f7bdf5d072a5fe78d7b4f2e655a5 349 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 36 324 4.0E-46 T 06-07-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 CDO28_RS34435 e898f7bdf5d072a5fe78d7b4f2e655a5 349 Gene3D G3DSA:3.60.130.10 210 326 1.2E-57 T 06-07-2017 CDO28_RS34435 e898f7bdf5d072a5fe78d7b4f2e655a5 349 Gene3D G3DSA:3.60.130.10 35 178 1.2E-57 T 06-07-2017 CDO28_RS34435 e898f7bdf5d072a5fe78d7b4f2e655a5 349 SUPERFAMILY SSF51197 32 326 9.62E-77 T 06-07-2017 CDO28_RS21540 9cdd0d1faf1e51cbf6cf456a68484c18 148 TIGRFAM TIGR02588 TIGR02588: TIGR02588 family protein 28 148 5.0E-52 T 06-07-2017 IPR013417 Conserved hypothetical protein CHP02588 CDO28_RS21540 9cdd0d1faf1e51cbf6cf456a68484c18 148 Gene3D G3DSA:3.10.180.10 75 146 8.2E-5 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS13395 1e9496c3e497323bf41fe292f6678e9e 406 Gene3D G3DSA:3.40.50.720 1 221 9.9E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13395 1e9496c3e497323bf41fe292f6678e9e 406 SUPERFAMILY SSF51735 1 370 2.57E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13395 1e9496c3e497323bf41fe292f6678e9e 406 Gene3D G3DSA:3.90.25.10 222 378 3.2E-31 T 06-07-2017 CDO28_RS13395 1e9496c3e497323bf41fe292f6678e9e 406 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 291 1.6E-25 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS15245 7eaa10179f36295c072ba6c71b384ac8 387 SUPERFAMILY SSF53098 109 336 2.96E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS15245 7eaa10179f36295c072ba6c71b384ac8 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS15245 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS15245 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS07125 7eaa10179f36295c072ba6c71b384ac8 387 SUPERFAMILY SSF53098 109 336 2.96E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS07125 7eaa10179f36295c072ba6c71b384ac8 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS07125 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS07125 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS00630 7eaa10179f36295c072ba6c71b384ac8 387 SUPERFAMILY SSF53098 109 336 2.96E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS00630 7eaa10179f36295c072ba6c71b384ac8 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS00630 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS00630 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS09855 7eaa10179f36295c072ba6c71b384ac8 387 SUPERFAMILY SSF53098 109 336 2.96E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS09855 7eaa10179f36295c072ba6c71b384ac8 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS09855 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS09855 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS10480 7eaa10179f36295c072ba6c71b384ac8 387 SUPERFAMILY SSF53098 109 336 2.96E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS10480 7eaa10179f36295c072ba6c71b384ac8 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS10480 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS10480 7eaa10179f36295c072ba6c71b384ac8 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS14165 6d27740adbe59698fdc2b602ebe0fd41 208 SUPERFAMILY SSF50475 2 193 8.68E-45 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS14165 6d27740adbe59698fdc2b602ebe0fd41 208 Gene3D G3DSA:2.30.110.10 11 187 8.8E-55 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS14165 6d27740adbe59698fdc2b602ebe0fd41 208 Pfam PF01613 Flavin reductase like domain 23 168 1.7E-18 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS14165 6d27740adbe59698fdc2b602ebe0fd41 208 SMART SM00903 20 171 2.3E-14 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 Gene3D G3DSA:3.90.1150.10 281 390 8.5E-33 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 Gene3D G3DSA:3.40.640.10 50 280 8.0E-87 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 213 250 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 4 388 45.161 T 06-07-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 9 386 3.2E-138 T 06-07-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 SUPERFAMILY SSF53383 7 386 4.03E-125 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS07995 8d0735a772135ac8ae93489c05c9969a 399 Pfam PF00202 Aminotransferase class-III 16 386 7.8E-119 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 258 32.659 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 Gene3D G3DSA:3.40.1160.10 5 256 4.1E-45 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 258 1.8E-75 T 06-07-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 SUPERFAMILY SSF53633 5 257 3.27E-54 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PRINTS PR00474 Glutamate 5-kinase family signature 210 230 3.1E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PRINTS PR00474 Glutamate 5-kinase family signature 149 176 3.1E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PRINTS PR00474 Glutamate 5-kinase family signature 117 138 3.1E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PRINTS PR00474 Glutamate 5-kinase family signature 43 57 3.1E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PRINTS PR00474 Glutamate 5-kinase family signature 77 105 3.1E-46 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 PIRSF PIRSF000729 1 266 8.3E-79 T 06-07-2017 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 Pfam PF00696 Amino acid kinase family 6 234 1.6E-39 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS22455 78fb89856c0275c409377b5de8e432a7 273 ProSitePatterns PS00902 Glutamate 5-kinase signature. 208 225 - T 06-07-2017 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDO28_RS03375 79fb93867714dad5ef834920fc5dfbad 157 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 112 157 2.0E-20 T 06-07-2017 CDO28_RS03375 79fb93867714dad5ef834920fc5dfbad 157 Pfam PF04191 Phospholipid methyltransferase 46 143 2.8E-14 T 06-07-2017 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 CDO28_RS22995 f8966e6a876cec122b105e049e9346ff 93 Pfam PF04552 Sigma-54, DNA binding domain 3 38 1.4E-12 T 06-07-2017 IPR007634 RNA polymerase sigma factor 54, DNA-binding CDO28_RS22995 f8966e6a876cec122b105e049e9346ff 93 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 23 30 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS22325 f8966e6a876cec122b105e049e9346ff 93 Pfam PF04552 Sigma-54, DNA binding domain 3 38 1.4E-12 T 06-07-2017 IPR007634 RNA polymerase sigma factor 54, DNA-binding CDO28_RS22325 f8966e6a876cec122b105e049e9346ff 93 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 23 30 - T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS31445 db85d2b59cc5965ac7d140a990548f69 270 Pfam PF08770 Sulphur oxidation protein SoxZ 179 261 8.1E-21 T 06-07-2017 IPR014880 Sulphur oxidation protein SoxZ CDO28_RS31445 db85d2b59cc5965ac7d140a990548f69 270 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 34 261 7.4E-81 T 06-07-2017 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier CDO28_RS31445 db85d2b59cc5965ac7d140a990548f69 270 SUPERFAMILY SSF81296 161 263 1.54E-25 T 06-07-2017 IPR014756 Immunoglobulin E-set CDO28_RS31445 db85d2b59cc5965ac7d140a990548f69 270 Pfam PF13501 Sulfur oxidation protein SoxY 40 146 1.5E-27 T 06-07-2017 IPR032711 Ig-like SoxY domain CDO28_RS31445 db85d2b59cc5965ac7d140a990548f69 270 Gene3D G3DSA:2.60.40.10 161 263 2.0E-34 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 SUPERFAMILY SSF47413 19 78 6.84E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 Gene3D G3DSA:3.40.50.2300 70 192 3.7E-17 T 06-07-2017 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 Gene3D G3DSA:1.10.260.40 19 69 7.5E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 SMART SM00354 19 89 5.7E-13 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 Pfam PF00356 Bacterial regulatory proteins, lacI family 21 66 1.9E-9 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 Gene3D G3DSA:3.40.50.2300 193 329 2.8E-19 T 06-07-2017 CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 97 283 3.8E-10 T 06-07-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain CDO28_RS17720 2d9fd815d66014ecaf1106efcb616561 353 SUPERFAMILY SSF53822 97 329 4.5E-25 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 SUPERFAMILY SSF51735 160 340 4.24E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 374 8.9E-179 T 06-07-2017 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|Reactome: R-HSA-71384 CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 Gene3D G3DSA:3.90.180.10 2 190 1.7E-59 T 06-07-2017 IPR011032 GroES-like CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 SUPERFAMILY SSF50129 1 186 2.89E-67 T 06-07-2017 IPR011032 GroES-like CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 Pfam PF00107 Zinc-binding dehydrogenase 197 326 1.8E-17 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 112 1.7E-23 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 Gene3D G3DSA:3.40.50.720 191 315 1.8E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31460 9a410fda78f9903c2ab4a426dd91564a 375 SUPERFAMILY SSF50129 325 375 9.89E-13 T 06-07-2017 IPR011032 GroES-like CDO28_RS28115 7498caf9e5899b84030956418b17f31b 319 Gene3D G3DSA:3.90.550.10 2 213 1.2E-37 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28115 7498caf9e5899b84030956418b17f31b 319 Pfam PF00535 Glycosyl transferase family 2 5 184 6.8E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS28115 7498caf9e5899b84030956418b17f31b 319 SUPERFAMILY SSF53448 4 251 1.13E-38 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PIRSF PIRSF038928 1 483 1.3E-213 T 06-07-2017 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 06-07-2017 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 SUPERFAMILY SSF56634 3 480 5.76E-201 T 06-07-2017 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 104 121 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 83 101 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 288 315 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 320 346 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 123 141 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 PRINTS PR00067 Catalase signature 21 44 1.3E-69 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 SMART SM01060 8 394 4.4E-273 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 Gene3D G3DSA:2.40.180.10 3 357 2.5E-169 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 Pfam PF00199 Catalase 8 391 3.1E-180 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS06770 d3073455aaff6eb405264bb3dbe3a31a 494 Pfam PF06628 Catalase-related immune-responsive 419 478 5.2E-18 T 06-07-2017 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS15060 7275662d015cfd10ccf284b9fc5cca50 366 Gene3D G3DSA:1.10.3470.10 28 361 1.7E-110 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS15060 7275662d015cfd10ccf284b9fc5cca50 366 Pfam PF01032 FecCD transport family 38 359 4.0E-96 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS15060 7275662d015cfd10ccf284b9fc5cca50 366 SUPERFAMILY SSF81345 27 359 1.06E-84 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 Pfam PF00593 TonB dependent receptor 489 743 1.6E-18 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 Gene3D G3DSA:2.170.130.10 31 159 9.5E-27 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 55 743 5.0E-85 T 06-07-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 SUPERFAMILY SSF56935 29 744 7.5E-96 T 06-07-2017 CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 Gene3D G3DSA:2.40.170.20 160 743 1.7E-74 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS20510 67fbef46aa7460727a03bd91fab10c39 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 157 3.0E-17 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS14200 95d1e64088275002c834fb839fe099a9 322 SUPERFAMILY SSF161098 90 305 1.23E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14200 95d1e64088275002c834fb839fe099a9 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 4.2E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14200 95d1e64088275002c834fb839fe099a9 322 Gene3D G3DSA:1.10.3720.10 88 314 9.2E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 SUPERFAMILY SSF53335 11 96 6.07E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 SUPERFAMILY SSF53335 162 368 6.07E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 283 300 4.0E-28 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 69 89 4.0E-28 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 31 45 4.0E-28 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 347 367 4.0E-28 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 324 342 4.0E-28 T 06-07-2017 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 36 41 - T 06-07-2017 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 Gene3D G3DSA:3.40.50.150 10 95 7.4E-69 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 Gene3D G3DSA:3.40.50.150 265 374 7.4E-69 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 Gene3D G3DSA:3.40.50.150 159 224 7.4E-69 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01360 c166d130c949813d2c505ae0ea25a12a 377 Pfam PF01555 DNA methylase 32 363 2.7E-46 T 06-07-2017 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CDO28_RS27560 7e144f015222c111353c17856bbb79ef 270 SUPERFAMILY SSF52540 4 225 9.81E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27560 7e144f015222c111353c17856bbb79ef 270 Pfam PF00005 ABC transporter 25 165 1.5E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27560 7e144f015222c111353c17856bbb79ef 270 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27560 7e144f015222c111353c17856bbb79ef 270 Gene3D G3DSA:3.40.50.300 3 218 1.9E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27560 7e144f015222c111353c17856bbb79ef 270 SMART SM00382 34 215 1.2E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28200 2bc0bb06147c12aa67d5491d72b3d2a2 334 Pfam PF00144 Beta-lactamase 44 315 1.2E-26 T 06-07-2017 IPR001466 Beta-lactamase-related CDO28_RS28200 2bc0bb06147c12aa67d5491d72b3d2a2 334 SUPERFAMILY SSF56601 3 314 4.07E-67 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS28200 2bc0bb06147c12aa67d5491d72b3d2a2 334 Gene3D G3DSA:3.40.710.10 43 320 3.4E-44 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS11690 30f6d1decfb63e2708b50de9351cc9cb 143 Gene3D G3DSA:3.10.590.10 1 132 7.9E-25 T 06-07-2017 IPR002740 EVE domain CDO28_RS11690 30f6d1decfb63e2708b50de9351cc9cb 143 SUPERFAMILY SSF88697 1 141 7.71E-53 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS11690 30f6d1decfb63e2708b50de9351cc9cb 143 Pfam PF01878 EVE domain 2 135 6.7E-41 T 06-07-2017 IPR002740 EVE domain CDO28_RS05690 f6da3099b203e1cca9a7874b51af26bd 183 Gene3D G3DSA:3.90.190.10 72 155 2.7E-9 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS05690 f6da3099b203e1cca9a7874b51af26bd 183 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 112 122 - T 06-07-2017 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 CDO28_RS05690 f6da3099b203e1cca9a7874b51af26bd 183 SUPERFAMILY SSF52799 28 159 1.54E-12 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS05165 f9063af24d498ceeb5ae0ff232d09c14 214 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 56 203 1.6E-36 T 06-07-2017 IPR018639 Domain of unknown function DUF2062 CDO28_RS18670 aa5bfa83ee2976c64423801240057bef 73 Pfam PF06945 Protein of unknown function (DUF1289) 3 49 2.5E-20 T 06-07-2017 IPR010710 Protein of unknown function DUF1289 CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 163 183 - T 06-07-2017 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105 CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 SUPERFAMILY SSF52402 1 260 1.05E-68 T 06-07-2017 CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 SMART SM00893 22 219 1.6E-52 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 Gene3D G3DSA:3.40.50.620 1 256 6.2E-82 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 Pfam PF01012 Electron transfer flavoprotein domain 23 214 3.3E-47 T 06-07-2017 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDO28_RS22975 8cb7b82c74f9474dbcfae54525450ec1 295 PIRSF PIRSF000090 1 272 2.1E-80 T 06-07-2017 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 CDO28_RS33440 c5dd0d4566d339ce01ace30a9b14046c 87 Pfam PF00550 Phosphopantetheine attachment site 9 81 2.1E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS33440 c5dd0d4566d339ce01ace30a9b14046c 87 SUPERFAMILY SSF47336 8 82 1.01E-12 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS33440 c5dd0d4566d339ce01ace30a9b14046c 87 Gene3D G3DSA:1.10.1200.10 7 81 2.1E-17 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS13735 935f66b4e3a8b4819d0f371c4f453866 100 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 93 7.3E-17 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS26345 9c80ddd5c5459aaecde68d2bc2c14da3 131 SUPERFAMILY SSF55298 10 125 9.58E-35 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS26345 9c80ddd5c5459aaecde68d2bc2c14da3 131 Gene3D G3DSA:3.30.1330.40 11 125 1.4E-34 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS26345 9c80ddd5c5459aaecde68d2bc2c14da3 131 Pfam PF01042 Endoribonuclease L-PSP 19 124 1.6E-25 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS13785 868d0bc0f852d5a0a0fb342764aee94e 96 SUPERFAMILY SSF143800 1 84 1.92E-29 T 06-07-2017 CDO28_RS13785 868d0bc0f852d5a0a0fb342764aee94e 96 Pfam PF00830 Ribosomal L28 family 3 61 1.7E-25 T 06-07-2017 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS13785 868d0bc0f852d5a0a0fb342764aee94e 96 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.5E-24 T 06-07-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13785 868d0bc0f852d5a0a0fb342764aee94e 96 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 20.128 T 06-07-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS13785 868d0bc0f852d5a0a0fb342764aee94e 96 Gene3D G3DSA:2.30.170.40 2 77 6.6E-32 T 06-07-2017 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 3.5E-58 T 06-07-2017 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 06-07-2017 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.2E-56 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 Gene3D G3DSA:2.40.150.20 1 122 2.4E-56 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 SUPERFAMILY SSF50193 1 122 7.59E-53 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 28.45 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDO28_RS03580 c359bc363cce8658cdcc5eec4876f2e2 122 SMART SM01374 1 122 1.5E-87 T 06-07-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 254 286 0.021 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 517 548 6.9E-7 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Gene3D G3DSA:3.40.50.300 22 275 1.4E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 SUPERFAMILY SSF52540 295 534 3.13E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Gene3D G3DSA:3.40.50.300 294 544 6.1E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 SUPERFAMILY SSF52540 15 277 3.17E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Pfam PF00005 ABC transporter 45 202 1.2E-23 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 Pfam PF00005 ABC transporter 313 464 2.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 SMART SM00382 321 513 6.7E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 SMART SM00382 53 252 1.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS18275 64d93ae6646a478b6f973bdf4799004f 561 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15495 f61a1b689b6bfbbc95b2faa3eb3e11cc 264 Gene3D G3DSA:3.60.140.10 17 262 4.5E-87 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase CDO28_RS15495 f61a1b689b6bfbbc95b2faa3eb3e11cc 264 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 28 259 2.0E-69 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase CDO28_RS15495 f61a1b689b6bfbbc95b2faa3eb3e11cc 264 SUPERFAMILY SSF64438 20 261 6.59E-84 T 06-07-2017 IPR011324 Cytotoxic necrotizing factor-like, catalytic CDO28_RS15495 f61a1b689b6bfbbc95b2faa3eb3e11cc 264 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 248 1.7E-48 T 06-07-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 Gene3D G3DSA:3.30.70.100 573 658 1.7E-7 T 06-07-2017 CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 SUPERFAMILY SSF82861 444 501 9.81E-11 T 06-07-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 Gene3D G3DSA:2.30.30.60 519 564 1.5E-10 T 06-07-2017 CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 SUPERFAMILY SSF50182 503 565 1.96E-10 T 06-07-2017 IPR010920 LSM domain CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 Pfam PF00924 Mechanosensitive ion channel 460 660 1.2E-39 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS23350 7d624ab1782a5bc1cd4dd2113c35cf74 701 SUPERFAMILY SSF82689 566 667 1.06E-13 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS26620 ae6c39c75f0755d8d907f23221918648 249 Pfam PF05050 Methyltransferase FkbM domain 55 172 3.4E-5 T 06-07-2017 IPR006342 Methyltransferase FkbM CDO28_RS26620 ae6c39c75f0755d8d907f23221918648 249 SUPERFAMILY SSF53335 21 186 1.25E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26620 ae6c39c75f0755d8d907f23221918648 249 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 48 185 4.7E-26 T 06-07-2017 IPR006342 Methyltransferase FkbM CDO28_RS26620 ae6c39c75f0755d8d907f23221918648 249 Gene3D G3DSA:3.40.50.150 30 171 1.9E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS22265 5aa8d1dd89837b8cbd9431cfec5f6adf 181 Gene3D G3DSA:1.10.760.10 74 169 7.8E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22265 5aa8d1dd89837b8cbd9431cfec5f6adf 181 SUPERFAMILY SSF46626 61 167 4.07E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22265 5aa8d1dd89837b8cbd9431cfec5f6adf 181 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 74 153 1.4E-12 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS02905 950ca77e227d6e2eb469ad8e77f7cd84 272 Pfam PF08904 Domain of unknown function (DUF1849) 23 266 3.9E-92 T 06-07-2017 IPR015000 Protein of unknown function DUF1849 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 SUPERFAMILY SSF56317 9 250 8.63E-60 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 SUPERFAMILY SSF52402 265 542 5.82E-76 T 06-07-2017 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 Gene3D G3DSA:3.60.110.10 9 250 2.6E-56 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 Gene3D G3DSA:3.40.50.620 269 541 1.1E-75 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 PIRSF PIRSF006630 8 559 2.5E-185 T 06-07-2017 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 Pfam PF02540 NAD synthase 280 532 1.0E-74 T 06-07-2017 IPR022310 NAD/GMP synthase CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 Pfam PF00795 Carbon-nitrogen hydrolase 12 250 1.4E-27 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS00020 37392c0a3b65d78c23ce856db5fcf6ac 560 TIGRFAM TIGR00552 nadE: NAD+ synthetase 284 537 3.9E-63 T 06-07-2017 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CDO28_RS17950 9ebf4d9c06166eb376ee3aa57152fd81 310 Gene3D G3DSA:1.10.443.10 107 294 9.5E-34 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS17950 9ebf4d9c06166eb376ee3aa57152fd81 310 SUPERFAMILY SSF56349 9 294 4.71E-34 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS17950 9ebf4d9c06166eb376ee3aa57152fd81 310 Pfam PF00589 Phage integrase family 109 289 1.0E-23 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS31305 437c02679848b2171085462635fa9966 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 1.9E-16 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 1.9E-16 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 1.9E-16 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 1.9E-16 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 SUPERFAMILY SSF51569 5 290 8.48E-74 T 06-07-2017 CDO28_RS31305 437c02679848b2171085462635fa9966 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 162 - T 06-07-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS31305 437c02679848b2171085462635fa9966 293 Gene3D G3DSA:3.20.20.70 4 291 2.5E-79 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31305 437c02679848b2171085462635fa9966 293 PIRSF PIRSF001365 1 293 1.4E-79 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 SMART SM01130 1 291 2.7E-84 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS31305 437c02679848b2171085462635fa9966 293 Pfam PF00701 Dihydrodipicolinate synthetase family 3 287 4.4E-54 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 SUPERFAMILY SSF52540 277 515 7.06E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 SMART SM00382 38 237 2.4E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 SMART SM00382 303 495 1.1E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Gene3D G3DSA:3.40.50.300 4 261 1.3E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 SUPERFAMILY SSF52540 20 259 2.25E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Pfam PF00005 ABC transporter 30 187 8.0E-19 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Pfam PF00005 ABC transporter 294 446 2.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Gene3D G3DSA:3.40.50.300 268 524 4.5E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 ProSitePatterns PS00211 ABC transporters family signature. 418 432 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 500 529 0.0067 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS15965 fd5f63f85ebdfab2dd06070675d6d82e 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 268 0.019 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS04485 56add95184be349f1611685e30695980 301 SUPERFAMILY SSF103481 190 283 4.18E-7 T 06-07-2017 CDO28_RS04485 56add95184be349f1611685e30695980 301 Pfam PF00892 EamA-like transporter family 154 278 9.6E-7 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS04485 56add95184be349f1611685e30695980 301 Pfam PF00892 EamA-like transporter family 37 144 6.1E-7 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS04485 56add95184be349f1611685e30695980 301 SUPERFAMILY SSF103481 50 147 1.44E-9 T 06-07-2017 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SUPERFAMILY SSF46565 2 109 6.8E-34 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SUPERFAMILY SSF49493 117 141 1.06E-20 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SUPERFAMILY SSF49493 189 264 1.06E-20 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Gene3D G3DSA:2.60.260.20 214 257 7.5E-25 T 06-07-2017 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Gene3D G3DSA:2.60.260.20 114 143 7.5E-25 T 06-07-2017 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Pfam PF00226 DnaJ domain 4 66 5.0E-27 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Pfam PF01556 DnaJ C terminal domain 124 337 4.5E-45 T 06-07-2017 IPR002939 Chaperone DnaJ, C-terminal CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Gene3D G3DSA:2.10.230.10 144 213 7.9E-23 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Pfam PF00684 DnaJ central domain 150 210 7.4E-13 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SUPERFAMILY SSF57938 137 214 2.35E-21 T 06-07-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 373 41.492 T 06-07-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SMART SM00271 3 61 2.0E-30 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 SUPERFAMILY SSF49493 262 348 2.09E-24 T 06-07-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Gene3D G3DSA:1.10.287.110 1 106 1.3E-35 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 Gene3D G3DSA:2.60.260.20 259 338 8.4E-25 T 06-07-2017 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 353 1.1E-133 T 06-07-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 PRINTS PR00625 DnaJ domain signature 6 24 3.6E-30 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 PRINTS PR00625 DnaJ domain signature 41 61 3.6E-30 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 PRINTS PR00625 DnaJ domain signature 61 80 3.6E-30 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 PRINTS PR00625 DnaJ domain signature 24 39 3.6E-30 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS09690 6b67fda60c39a42a2f172e7be59cdda8 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 06-07-2017 IPR018253 DnaJ domain, conserved site CDO28_RS25575 7eb9dba06ee79475be381b23b7d9ea46 216 Pfam PF00857 Isochorismatase family 18 168 3.6E-26 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS25575 7eb9dba06ee79475be381b23b7d9ea46 216 Gene3D G3DSA:3.40.50.850 11 209 3.5E-40 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS25575 7eb9dba06ee79475be381b23b7d9ea46 216 SUPERFAMILY SSF52499 10 208 1.7E-46 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS18450 caecf8e899efba3ccaa721818cd8cb55 93 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 17 81 5.2E-10 T 06-07-2017 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB CDO28_RS18450 caecf8e899efba3ccaa721818cd8cb55 93 PIRSF PIRSF017854 9 93 1.6E-35 T 06-07-2017 IPR016704 Conjugal transfer, TrbD CDO28_RS26520 d2e85e0197470f93ad24b2d149b79831 280 Gene3D G3DSA:3.40.50.300 21 264 6.7E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26520 d2e85e0197470f93ad24b2d149b79831 280 Pfam PF00685 Sulfotransferase domain 26 264 4.4E-24 T 06-07-2017 IPR000863 Sulfotransferase domain GO:0008146 CDO28_RS26520 d2e85e0197470f93ad24b2d149b79831 280 SUPERFAMILY SSF52540 24 264 1.44E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 8 150 5.8E-54 T 06-07-2017 CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 108 126 - T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 PIRSF PIRSF000216 1 167 3.0E-62 T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 Gene3D G3DSA:3.40.30.10 71 153 1.8E-10 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 6 150 2.5E-62 T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24740 af4457b36047cbba509c2c90b9bc8d6b 168 SUPERFAMILY SSF52833 3 158 3.58E-53 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 16 196 2.1E-22 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 18 209 4.2E-53 T 06-07-2017 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 PIRSF PIRSF036428 11 413 1.2E-143 T 06-07-2017 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 Gene3D G3DSA:3.40.1010.10 14 119 5.9E-27 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 Gene3D G3DSA:3.30.950.10 120 220 4.3E-28 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 243 364 1.6E-32 T 06-07-2017 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 Gene3D G3DSA:3.40.50.150 228 377 4.5E-18 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 SUPERFAMILY SSF53790 15 216 9.42E-45 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12510 3539985ea78230733ea91c687047ee2f 413 SUPERFAMILY SSF53335 219 407 6.03E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 15 141 2.6E-49 T 06-07-2017 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 PIRSF PIRSF003230 7 150 4.8E-44 T 06-07-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 Gene3D G3DSA:3.10.129.10 14 143 2.0E-43 T 06-07-2017 IPR029069 HotDog domain CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 SUPERFAMILY SSF54637 15 143 1.87E-36 T 06-07-2017 IPR029069 HotDog domain CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 Pfam PF03061 Thioesterase superfamily 30 117 1.2E-18 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 20 125 1.9E-30 T 06-07-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CDO28_RS13400 064c2839eb392b187697f57d4a82b9d6 151 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 20 37 - T 06-07-2017 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 24 330 1.2E-125 T 06-07-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 PIRSF PIRSF000545 16 331 3.2E-140 T 06-07-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 Hamap MF_00215 Pantothenate kinase [coaA]. 1 331 179.187 T 06-07-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 SUPERFAMILY SSF52540 21 329 2.53E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 104 262 2.9E-13 T 06-07-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 CDO28_RS10390 bd7b757a7850d8c71f907a6d99cbc5d1 331 Gene3D G3DSA:3.40.50.300 23 330 4.0E-103 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 Gene3D G3DSA:1.20.58.180 223 309 1.1E-31 T 06-07-2017 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 14 311 58.54 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 SUPERFAMILY SSF55681 15 308 3.73E-127 T 06-07-2017 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 Gene3D G3DSA:3.30.930.10 9 221 2.3E-102 T 06-07-2017 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 16 307 8.9E-144 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 89 109 4.3E-55 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 120 144 4.3E-55 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 68 83 4.3E-55 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 146 166 4.3E-55 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 169 184 4.3E-55 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06330 954e2dedccf4ac9f354189aa07ada8e9 320 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 15 306 1.4E-138 T 06-07-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS24580 666f632544aec0b4e3a9e945c23bbbd4 296 Gene3D G3DSA:3.40.190.120 129 235 4.6E-31 T 06-07-2017 CDO28_RS24580 666f632544aec0b4e3a9e945c23bbbd4 296 SUPERFAMILY SSF53850 28 293 4.19E-64 T 06-07-2017 CDO28_RS24580 666f632544aec0b4e3a9e945c23bbbd4 296 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 292 7.5E-67 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS24580 666f632544aec0b4e3a9e945c23bbbd4 296 Gene3D G3DSA:3.40.190.10 241 295 6.4E-58 T 06-07-2017 CDO28_RS24580 666f632544aec0b4e3a9e945c23bbbd4 296 Gene3D G3DSA:3.40.190.10 27 128 6.4E-58 T 06-07-2017 CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 Pfam PF01011 PQQ enzyme repeat 708 743 6.6E-5 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SMART SM00564 217 248 0.15 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SMART SM00564 332 373 0.65 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SMART SM00564 414 451 320.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SMART SM00564 275 307 77.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SMART SM00564 700 733 1.0 T 06-07-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SUPERFAMILY SSF50998 550 777 3.27E-155 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 SUPERFAMILY SSF50998 160 515 3.27E-155 T 06-07-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 Pfam PF13360 PQQ-like domain 216 451 7.4E-11 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 5 777 0.0 T 06-07-2017 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 Gene3D G3DSA:2.140.10.10 160 527 1.1E-155 T 06-07-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain CDO28_RS05625 42503822752e1e89decaa22f1bd0aa7f 777 Gene3D G3DSA:2.140.10.10 561 777 1.1E-155 T 06-07-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain CDO28_RS23150 8049fd0b2247da4c69d91d47e46effed 426 TIGRFAM TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC 3 395 3.4E-225 T 06-07-2017 IPR026463 Chitooligosaccharide synthase NodC CDO28_RS23150 8049fd0b2247da4c69d91d47e46effed 426 Gene3D G3DSA:3.90.550.10 49 288 9.7E-34 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS23150 8049fd0b2247da4c69d91d47e46effed 426 Pfam PF00535 Glycosyl transferase family 2 52 221 3.3E-35 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS23150 8049fd0b2247da4c69d91d47e46effed 426 SUPERFAMILY SSF53448 44 304 1.78E-48 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS23150 8049fd0b2247da4c69d91d47e46effed 426 ProDom PD339107 ALGINATE ALG8 BIOSYNTHESIS TRANSFERASE TRANSMEMBRANE MEMBRANE 2.4.1.- GLYCOSYL GLYCOSYLTRANSFERASE PRECURSOR 54 295 4.0E-7 T 06-07-2017 CDO28_RS11960 5fdb7a96354ab9df34c8cb41478bf6d7 574 Pfam PF01547 Bacterial extracellular solute-binding protein 80 419 4.3E-10 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS11960 5fdb7a96354ab9df34c8cb41478bf6d7 574 SUPERFAMILY SSF53850 62 511 2.24E-52 T 06-07-2017 CDO28_RS11960 5fdb7a96354ab9df34c8cb41478bf6d7 574 Gene3D G3DSA:3.40.190.10 195 440 8.3E-39 T 06-07-2017 CDO28_RS11960 5fdb7a96354ab9df34c8cb41478bf6d7 574 Gene3D G3DSA:3.40.190.10 79 194 2.1E-9 T 06-07-2017 CDO28_RS11960 5fdb7a96354ab9df34c8cb41478bf6d7 574 PIRSF PIRSF035859 1 574 2.4E-297 T 06-07-2017 IPR014597 ABC transporter, periplasmic substrate-binding protein GO:0005215 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PRINTS PR00412 Epoxide hydrolase signature 229 242 7.8E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PRINTS PR00412 Epoxide hydrolase signature 155 173 7.8E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PRINTS PR00412 Epoxide hydrolase signature 386 402 7.8E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PRINTS PR00412 Epoxide hydrolase signature 184 199 7.8E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PRINTS PR00412 Epoxide hydrolase signature 418 440 7.8E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 Gene3D G3DSA:3.40.50.1820 53 446 3.0E-129 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 SUPERFAMILY SSF53474 54 443 1.08E-92 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 PIRSF PIRSF001112 9 447 2.2E-152 T 06-07-2017 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS19605 dd6af5dbad624c70a4f5f01df9fffe5e 448 Pfam PF06441 Epoxide hydrolase N terminus 59 163 8.4E-37 T 06-07-2017 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 SMART SM00327 410 619 8.1E-10 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 Pfam PF06213 Cobalamin biosynthesis protein CobT 14 285 1.5E-95 T 06-07-2017 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 SUPERFAMILY SSF53300 413 606 4.45E-16 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 Gene3D G3DSA:3.40.50.410 413 588 1.4E-6 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 17 618 0.0 T 06-07-2017 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 PIRSF PIRSF031715 2 624 2.2E-293 T 06-07-2017 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS13770 37609817481c2b0d05edf9062f4ca545 631 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 399 616 6.1E-113 T 06-07-2017 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 TIGRFAM TIGR00586 mutt: mutator mutT protein 4 129 8.6E-29 T 06-07-2017 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 SUPERFAMILY SSF55811 4 132 2.3E-41 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 PRINTS PR00502 NUDIX hydrolase family signature 36 50 1.9E-9 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 PRINTS PR00502 NUDIX hydrolase family signature 50 65 1.9E-9 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 Pfam PF00293 NUDIX domain 9 129 3.9E-22 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS14020 e1fbaee38ed5fa16ba21a85e1a919841 135 Gene3D G3DSA:3.90.79.10 8 130 6.4E-37 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS33935 d0e0d05ad0d47df3b61c6eabc6b14c72 73 Gene3D G3DSA:1.10.260.40 8 53 4.5E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS33935 d0e0d05ad0d47df3b61c6eabc6b14c72 73 Pfam PF01381 Helix-turn-helix 7 53 3.1E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS33935 d0e0d05ad0d47df3b61c6eabc6b14c72 73 SUPERFAMILY SSF47413 4 55 3.38E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS08720 90812e11bdc9a1350a16f7255bf2dd1e 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 5.6E-80 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS08720 90812e11bdc9a1350a16f7255bf2dd1e 257 Gene3D G3DSA:3.90.226.10 1 255 4.8E-100 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS08720 90812e11bdc9a1350a16f7255bf2dd1e 257 SUPERFAMILY SSF52096 1 257 2.2E-90 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS08720 90812e11bdc9a1350a16f7255bf2dd1e 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 06-07-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 CDO28_RS10060 e506ba1faf80c10d67eb47a9a217f67a 574 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 126 136 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS10060 e506ba1faf80c10d67eb47a9a217f67a 574 Pfam PF00920 Dehydratase family 43 557 5.8E-177 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS10060 e506ba1faf80c10d67eb47a9a217f67a 574 SUPERFAMILY SSF52016 377 563 1.41E-57 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS10060 e506ba1faf80c10d67eb47a9a217f67a 574 SUPERFAMILY SSF143975 3 376 1.28E-121 T 06-07-2017 CDO28_RS17815 ce01893309658468cade72efe0595150 131 Pfam PF01475 Ferric uptake regulator family 6 123 1.8E-11 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CDO28_RS17815 ce01893309658468cade72efe0595150 131 SUPERFAMILY SSF46785 5 128 1.21E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17815 ce01893309658468cade72efe0595150 131 Gene3D G3DSA:1.10.10.10 6 61 4.2E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Gene3D G3DSA:3.90.480.10 48 117 1.1E-37 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Gene3D G3DSA:3.90.480.10 321 403 1.1E-37 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 SUPERFAMILY SSF56014 407 549 4.97E-34 T 06-07-2017 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 SUPERFAMILY SSF56014 120 278 2.22E-47 T 06-07-2017 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 SUPERFAMILY SSF55124 1 126 4.25E-32 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Gene3D G3DSA:3.30.413.10 408 548 1.9E-32 T 06-07-2017 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 SUPERFAMILY SSF55124 315 421 1.37E-25 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 SUPERFAMILY SSF55124 252 276 1.37E-25 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 413 530 7.9E-11 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 272 1.3E-41 T 06-07-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 52 110 7.9E-17 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 329 398 1.2E-15 T 06-07-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDO28_RS03020 22c9bd53752e975422eea6a053623969 557 Gene3D G3DSA:3.30.413.10 120 271 9.9E-45 T 06-07-2017 CDO28_RS10460 34078359252507a4196f2afcf64505c8 243 Gene3D G3DSA:3.90.550.10 2 238 1.5E-47 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS10460 34078359252507a4196f2afcf64505c8 243 SUPERFAMILY SSF53448 5 236 1.42E-46 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS10460 34078359252507a4196f2afcf64505c8 243 Pfam PF12804 MobA-like NTP transferase domain 6 115 1.6E-15 T 06-07-2017 IPR025877 MobA-like NTP transferase CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 SMART SM00922 146 241 7.0E-19 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 SUPERFAMILY SSF51604 116 365 5.24E-59 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 Pfam PF13378 Enolase C-terminal domain-like 150 361 2.4E-46 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 SUPERFAMILY SSF54826 2 133 1.93E-26 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 Gene3D G3DSA:3.20.20.120 115 354 5.3E-67 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 191 222 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 128 6.5E-18 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS24575 76aafb87af990914c1f512e8b0c07d4d 374 Gene3D G3DSA:3.30.390.10 1 114 1.1E-29 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS31825 0a80905af43933778f81347fca5a2af9 199 PIRSF PIRSF000709 14 199 1.4E-7 T 06-07-2017 CDO28_RS31825 0a80905af43933778f81347fca5a2af9 199 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 196 2.2E-49 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS31825 0a80905af43933778f81347fca5a2af9 199 SMART SM00855 4 157 1.8E-12 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS31825 0a80905af43933778f81347fca5a2af9 199 Gene3D G3DSA:3.40.50.1240 2 196 1.1E-47 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS31825 0a80905af43933778f81347fca5a2af9 199 SUPERFAMILY SSF53254 2 195 1.91E-42 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 420 439 3.8E-21 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 3.8E-21 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 3.8E-21 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 3.8E-21 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 Pfam PF05746 DALR anticodon binding domain 611 708 5.7E-6 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 719 23.839 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 579 1.6E-194 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 719 4.7E-161 T 06-07-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDO28_RS06310 157f080be57b81e1cb009ea1c8176d72 721 SUPERFAMILY SSF109604 376 516 1.62E-15 T 06-07-2017 CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 SUPERFAMILY SSF47616 74 214 2.13E-23 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 Gene3D G3DSA:3.40.30.10 3 95 4.3E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 SUPERFAMILY SSF52833 1 106 2.24E-19 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 Pfam PF00043 Glutathione S-transferase, C-terminal domain 115 197 4.5E-9 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 Gene3D G3DSA:1.20.1050.10 96 216 2.6E-28 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS17000 9f9f830a5331c12934bef813afcb41e3 224 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 81 8.2E-14 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS00530 7cf003c7af48be623ef065e1adfd28c5 235 Pfam PF13478 XdhC Rossmann domain 78 218 5.1E-37 T 06-07-2017 IPR027051 XdhC Rossmann domain CDO28_RS11275 f89c56d3994e29a2c4b98a70c570e175 317 Gene3D G3DSA:3.40.50.2300 151 283 3.8E-50 T 06-07-2017 CDO28_RS11275 f89c56d3994e29a2c4b98a70c570e175 317 Pfam PF04392 ABC transporter substrate binding protein 24 314 5.3E-106 T 06-07-2017 IPR007487 ABC transporter, substrate-binding protein CDO28_RS11275 f89c56d3994e29a2c4b98a70c570e175 317 SUPERFAMILY SSF53822 24 282 3.6E-18 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS11275 f89c56d3994e29a2c4b98a70c570e175 317 Gene3D G3DSA:3.40.50.2300 22 150 4.1E-56 T 06-07-2017 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 250 263 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 SUPERFAMILY SSF89000 397 447 5.89E-14 T 06-07-2017 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 SMART SM00917 431 564 3.4E-31 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 SUPERFAMILY SSF51569 30 337 2.01E-92 T 06-07-2017 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 Gene3D G3DSA:3.20.20.70 18 403 3.3E-139 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 SUPERFAMILY SSF110921 454 563 3.01E-34 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 Pfam PF00682 HMGL-like 41 318 2.9E-73 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 16 565 52.606 T 06-07-2017 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 48 64 - T 06-07-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 17 563 2.4E-228 T 06-07-2017 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS15325 ec1356304191be7720994d53de0e9233 569 Pfam PF08502 LeuA allosteric (dimerisation) domain 434 564 1.0E-28 T 06-07-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDO28_RS25455 25473217812f10379ae4a177280a93b2 153 Gene3D G3DSA:3.40.50.720 43 149 2.6E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25455 25473217812f10379ae4a177280a93b2 153 Pfam PF00106 short chain dehydrogenase 61 150 7.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25455 25473217812f10379ae4a177280a93b2 153 SUPERFAMILY SSF51735 61 149 8.15E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 Pfam PF02814 UreE urease accessory protein, N-terminal domain 17 66 4.4E-13 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 PIRSF PIRSF036402 2 153 9.7E-46 T 06-07-2017 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 Gene3D G3DSA:2.60.260.20 20 72 0.001 T 06-07-2017 CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 SUPERFAMILY SSF69287 16 73 2.22E-12 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 SMART SM00988 4 68 1.6E-12 T 06-07-2017 IPR004029 UreE urease accessory, N-terminal CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 Hamap MF_00822 Urease accessory protein UreE [ureE]. 3 142 19.683 T 06-07-2017 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 Pfam PF05194 UreE urease accessory protein, C-terminal domain 75 152 1.2E-25 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 Gene3D G3DSA:3.30.70.790 75 145 1.7E-28 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CDO28_RS14880 e239533d8e6191fd9c003f7f99e6b202 154 SUPERFAMILY SSF69737 75 141 2.35E-19 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 PRINTS PR00412 Epoxide hydrolase signature 182 197 2.6E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 PRINTS PR00412 Epoxide hydrolase signature 227 240 2.6E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 PRINTS PR00412 Epoxide hydrolase signature 153 171 2.6E-7 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 PIRSF PIRSF001112 5 340 5.4E-139 T 06-07-2017 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 SUPERFAMILY SSF53474 54 338 1.95E-77 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 Pfam PF06441 Epoxide hydrolase N terminus 57 161 1.1E-36 T 06-07-2017 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS31680 46ac1905e327108504fe22c6037308f5 344 Gene3D G3DSA:3.40.50.1820 54 335 2.9E-107 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS17630 782f3cf94b8a65b73527bcbb78ba7644 142 Gene3D G3DSA:3.30.420.180 10 132 5.4E-33 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 CDO28_RS17630 782f3cf94b8a65b73527bcbb78ba7644 142 Pfam PF01890 Cobalamin synthesis G C-terminus 12 132 4.0E-29 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 CDO28_RS17630 782f3cf94b8a65b73527bcbb78ba7644 142 SUPERFAMILY SSF159664 10 132 9.29E-35 T 06-07-2017 IPR002750 CobE/GbiG C-terminal domain GO:0009236 CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Gene3D G3DSA:3.40.350.10 15 138 2.6E-17 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDO28_RS16490 60256b466f255507495a6024c9e30592 611 SUPERFAMILY SSF55920 315 574 5.1E-54 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Gene3D G3DSA:3.90.230.10 312 575 3.8E-56 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS16490 60256b466f255507495a6024c9e30592 611 SUPERFAMILY SSF53092 15 138 5.58E-12 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Pfam PF16189 Creatinase/Prolidase N-terminal domain 158 318 4.6E-32 T 06-07-2017 CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Pfam PF01321 Creatinase/Prolidase N-terminal domain 17 139 3.9E-17 T 06-07-2017 IPR000587 Creatinase, N-terminal GO:0016787 CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Pfam PF16188 C-terminal region of peptidase_M24 549 609 8.8E-22 T 06-07-2017 IPR032416 Peptidase M24, C-terminal domain CDO28_RS16490 60256b466f255507495a6024c9e30592 611 Pfam PF00557 Metallopeptidase family M24 324 538 3.0E-43 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 Gene3D G3DSA:1.10.150.120 77 157 5.2E-35 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 Gene3D G3DSA:3.10.20.30 4 76 1.4E-29 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 SUPERFAMILY SSF47741 87 156 2.75E-33 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 Pfam PF01799 [2Fe-2S] binding domain 75 148 2.7E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 SUPERFAMILY SSF54292 4 80 2.23E-24 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 56 5.2E-8 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS31260 c2bb533b933b1b91ed491a9f8dffdae7 161 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS13870 631b05827d14ae1ec0cd323189d2b611 119 SMART SM00448 2 113 1.8E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13870 631b05827d14ae1ec0cd323189d2b611 119 Gene3D G3DSA:3.40.50.2300 1 117 4.4E-32 T 06-07-2017 CDO28_RS13870 631b05827d14ae1ec0cd323189d2b611 119 Pfam PF00072 Response regulator receiver domain 4 113 4.3E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13870 631b05827d14ae1ec0cd323189d2b611 119 SUPERFAMILY SSF52172 1 118 9.11E-32 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 7 457 2.8E-179 T 06-07-2017 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 Gene3D G3DSA:3.40.640.10 99 315 5.4E-31 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 Pfam PF03841 L-seryl-tRNA selenium transferase 80 447 1.9E-171 T 06-07-2017 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 Pfam PF12390 Selenocysteine synthase N terminal 7 46 1.4E-9 T 06-07-2017 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 463 231.88 T 06-07-2017 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CDO28_RS20710 02336c7f725b0497f83f456353e1c5ee 466 SUPERFAMILY SSF53383 76 374 3.23E-44 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS16010 95aa7a94125556e1e0960aec59443bbc 300 Pfam PF05853 beta-keto acid cleavage enzyme 9 297 1.1E-97 T 06-07-2017 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 CDO28_RS16010 95aa7a94125556e1e0960aec59443bbc 300 Gene3D G3DSA:3.20.20.70 7 298 7.2E-112 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 2.9E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 2.9E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 2.9E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 Pfam PF00106 short chain dehydrogenase 11 209 4.8E-43 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 Gene3D G3DSA:3.40.50.720 9 230 2.9E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 9.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 9.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 9.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 9.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 9.2E-20 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14755 7ce5d23969a7010c9f20b64dcddeb5c9 291 SUPERFAMILY SSF51735 9 236 1.52E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 SMART SM00862 44 119 3.3E-16 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 Pfam PF00486 Transcriptional regulatory protein, C terminal 44 119 7.5E-17 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 Gene3D G3DSA:1.10.10.10 27 120 2.7E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 SUPERFAMILY SSF48452 303 523 2.73E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 SUPERFAMILY SSF46894 26 120 5.67E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS29805 84caa8b95190cec98600566ae71804ea 554 Gene3D G3DSA:1.25.40.10 302 522 3.9E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS19595 12698d10a19904236ab54b2384f8528b 157 Pfam PF07883 Cupin domain 65 125 1.8E-11 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS19595 12698d10a19904236ab54b2384f8528b 157 SUPERFAMILY SSF51182 38 154 1.07E-27 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS19595 12698d10a19904236ab54b2384f8528b 157 Gene3D G3DSA:2.60.120.10 40 154 4.1E-29 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS14240 66cdb8545d654746a89dc92ce150d022 296 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 279 2.0E-34 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 253 3.4E-23 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 Gene3D G3DSA:2.40.50.100 58 89 4.9E-8 T 06-07-2017 CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 Gene3D G3DSA:2.40.50.100 150 179 4.9E-8 T 06-07-2017 CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 Pfam PF00529 HlyD membrane-fusion protein of T1SS 17 260 2.3E-8 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 SUPERFAMILY SSF111369 48 244 3.79E-21 T 06-07-2017 CDO28_RS32425 d74fb02269524e8855ba3b00fb4e5f2b 337 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 31 331 2.1E-47 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Gene3D G3DSA:3.40.50.261 133 290 2.4E-14 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 157 291 4.9E-30 T 06-07-2017 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Gene3D G3DSA:3.40.50.720 4 132 1.5E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Pfam PF13549 ATP-grasp domain 480 684 7.6E-46 T 06-07-2017 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 SUPERFAMILY SSF56059 481 683 1.33E-30 T 06-07-2017 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Pfam PF13380 CoA binding domain 15 136 1.7E-21 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 SUPERFAMILY SSF52210 133 292 2.09E-30 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 Gene3D G3DSA:3.30.470.20 485 569 1.4E-7 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 SUPERFAMILY SSF52210 301 457 9.61E-19 T 06-07-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 SMART SM00881 11 101 3.1E-22 T 06-07-2017 IPR003781 CoA-binding GO:0048037 CDO28_RS15990 f2efb1ec29981f626fc5275e19b9e974 687 SUPERFAMILY SSF51735 4 139 3.04E-27 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 SUPERFAMILY SSF88659 81 155 7.66E-15 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 153 2.3E-24 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 Pfam PF08281 Sigma-70, region 4 100 151 7.2E-12 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 Pfam PF04542 Sigma-70 region 2 1 65 1.3E-11 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 Gene3D G3DSA:1.10.10.10 95 156 2.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 Gene3D G3DSA:1.10.1740.10 2 65 1.4E-13 T 06-07-2017 CDO28_RS17160 3748d8eeb39f3d0aaae8f81a9e47062c 159 SUPERFAMILY SSF88946 1 79 4.32E-14 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS20820 856845e2c093f53b512aff32f4ad3a02 73 Pfam PF00171 Aldehyde dehydrogenase family 1 58 1.1E-12 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS20820 856845e2c093f53b512aff32f4ad3a02 73 SUPERFAMILY SSF53720 2 69 6.87E-15 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS20820 856845e2c093f53b512aff32f4ad3a02 73 Gene3D G3DSA:3.40.309.10 1 69 2.9E-14 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS15140 c24007c0db844e0641b76ba4aa0eb638 351 SUPERFAMILY SSF51556 4 347 1.17E-86 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS15140 c24007c0db844e0641b76ba4aa0eb638 351 Gene3D G3DSA:3.20.20.140 4 348 7.5E-101 T 06-07-2017 CDO28_RS15140 c24007c0db844e0641b76ba4aa0eb638 351 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 3 345 9.9E-101 T 06-07-2017 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 459 616 9.4E-45 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 375 458 2.8E-62 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 619 767 2.8E-62 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 SUPERFAMILY SSF56003 137 766 2.09E-194 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 SMART SM01008 33 145 1.3E-50 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 SUPERFAMILY SSF54665 15 164 6.54E-43 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 299 374 5.2E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 148 191 5.2E-35 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 173 703 3.6E-170 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 33 145 1.0E-28 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.30.365.10 192 296 6.3E-40 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS31265 46dbf57525583a342d23fb7a7859f3bc 772 Gene3D G3DSA:3.90.1170.50 13 145 2.2E-45 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS01700 58c945949a9fe77e87dbcf9dc436a974 106 Pfam PF10115 Transcriptional activator HlyU 3 97 3.9E-32 T 06-07-2017 IPR018772 Transcription activator HlyU CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 Gene3D G3DSA:2.30.40.10 430 474 3.6E-25 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 Gene3D G3DSA:2.30.40.10 58 117 3.6E-25 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 SUPERFAMILY SSF51556 116 421 4.4E-77 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 Gene3D G3DSA:3.20.20.140 118 418 1.2E-80 T 06-07-2017 CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 Pfam PF01979 Amidohydrolase family 112 459 1.8E-27 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 SUPERFAMILY SSF51338 407 475 3.29E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25110 c644d9225d3636e5dd49e17e5ee3b62f 477 SUPERFAMILY SSF51338 61 129 5.76E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS31600 89d9eaa45864f5e854b3ab3ff081f36b 303 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 8 303 5.8E-112 T 06-07-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 CDO28_RS31600 89d9eaa45864f5e854b3ab3ff081f36b 303 Gene3D G3DSA:3.60.15.10 7 303 7.8E-91 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31600 89d9eaa45864f5e854b3ab3ff081f36b 303 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 303 147.706 T 06-07-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 CDO28_RS31600 89d9eaa45864f5e854b3ab3ff081f36b 303 Pfam PF12706 Beta-lactamase superfamily domain 57 271 9.3E-44 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS31600 89d9eaa45864f5e854b3ab3ff081f36b 303 SUPERFAMILY SSF56281 7 303 4.34E-51 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS09065 f77a78aee792c02e7700540a4c73cee9 196 SUPERFAMILY SSF52218 1 196 5.24E-51 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS09065 f77a78aee792c02e7700540a4c73cee9 196 Gene3D G3DSA:3.40.50.360 1 196 3.6E-43 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS09065 f77a78aee792c02e7700540a4c73cee9 196 Pfam PF02525 Flavodoxin-like fold 1 191 1.2E-34 T 06-07-2017 IPR003680 Flavodoxin-like fold CDO28_RS34670 7028bf10469f3d1f9093cd06266e3b4c 194 Gene3D G3DSA:3.40.50.10140 36 116 2.1E-7 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS34670 7028bf10469f3d1f9093cd06266e3b4c 194 Pfam PF13676 TIR domain 39 139 1.6E-11 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS34670 7028bf10469f3d1f9093cd06266e3b4c 194 SUPERFAMILY SSF52200 36 134 1.06E-9 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 PIRSF PIRSF002741 9 492 3.6E-73 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 Gene3D G3DSA:3.90.76.10 43 196 6.1E-38 T 06-07-2017 CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 416 5.1E-80 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 SUPERFAMILY SSF53850 39 497 6.7E-112 T 06-07-2017 CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 80 102 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS19685 96704803cbd58af02ae91cb4547cfcfe 507 Gene3D G3DSA:3.10.105.10 274 472 5.2E-39 T 06-07-2017 CDO28_RS27975 9ea15e86f2177fe01dc2a6836d2f3ee4 506 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 290 495 6.6E-41 T 06-07-2017 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 CDO28_RS27975 9ea15e86f2177fe01dc2a6836d2f3ee4 506 SMART SM00813 290 495 4.4E-95 T 06-07-2017 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 CDO28_RS27975 9ea15e86f2177fe01dc2a6836d2f3ee4 506 SUPERFAMILY SSF51011 372 501 1.29E-38 T 06-07-2017 CDO28_RS27975 9ea15e86f2177fe01dc2a6836d2f3ee4 506 SUPERFAMILY SSF51445 16 383 3.95E-113 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS27975 9ea15e86f2177fe01dc2a6836d2f3ee4 506 Gene3D G3DSA:3.20.20.80 37 302 3.1E-29 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS29595 354d041ce1ca358a7cf5c06115f16c5c 434 SUPERFAMILY SSF53850 47 432 2.75E-51 T 06-07-2017 CDO28_RS29595 354d041ce1ca358a7cf5c06115f16c5c 434 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 28 4.8E-4 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS29595 354d041ce1ca358a7cf5c06115f16c5c 434 Pfam PF13416 Bacterial extracellular solute-binding protein 63 370 1.8E-33 T 06-07-2017 CDO28_RS29595 354d041ce1ca358a7cf5c06115f16c5c 434 Gene3D G3DSA:3.40.190.10 157 347 2.3E-30 T 06-07-2017 CDO28_RS25665 81c0a784647750fe77e9f45e1ae3a544 278 Gene3D G3DSA:3.40.630.30 141 231 1.6E-4 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25665 81c0a784647750fe77e9f45e1ae3a544 278 SUPERFAMILY SSF55729 5 248 1.35E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25665 81c0a784647750fe77e9f45e1ae3a544 278 Pfam PF00583 Acetyltransferase (GNAT) family 47 117 4.6E-10 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS25665 81c0a784647750fe77e9f45e1ae3a544 278 Gene3D G3DSA:3.40.630.30 4 120 7.7E-20 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04425 c8ac616132e3ffbb282115f6316ed2cb 179 SUPERFAMILY SSF55729 2 156 3.54E-38 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04425 c8ac616132e3ffbb282115f6316ed2cb 179 Pfam PF13302 Acetyltransferase (GNAT) domain 11 155 8.2E-27 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS04425 c8ac616132e3ffbb282115f6316ed2cb 179 Gene3D G3DSA:3.40.630.30 3 172 1.1E-43 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 Gene3D G3DSA:3.30.1340.10 9 95 2.3E-29 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 SUPERFAMILY SSF55594 10 95 7.33E-27 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 20 27 - T 06-07-2017 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 10 88 1.3E-27 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 Pfam PF00381 PTS HPr component phosphorylation site 10 89 9.2E-25 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 PRINTS PR00107 Phosphocarrier protein signature 45 60 1.0E-10 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 PRINTS PR00107 Phosphocarrier protein signature 60 77 1.0E-10 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS10440 5bf8b1793ac2144b18bb6a0cda90c1f9 96 PRINTS PR00107 Phosphocarrier protein signature 20 36 1.0E-10 T 06-07-2017 IPR000032 Phosphocarrier protein HPr-like CDO28_RS29465 8f55cc1108546a1f6d7bda08f9a50533 275 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 163 169 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS29465 8f55cc1108546a1f6d7bda08f9a50533 275 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 52 259 4.8E-45 T 06-07-2017 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CDO28_RS29465 8f55cc1108546a1f6d7bda08f9a50533 275 Gene3D G3DSA:3.40.50.150 62 259 4.7E-53 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS29465 8f55cc1108546a1f6d7bda08f9a50533 275 SUPERFAMILY SSF53335 51 226 1.38E-42 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS29465 8f55cc1108546a1f6d7bda08f9a50533 275 Pfam PF05175 Methyltransferase small domain 89 182 2.0E-10 T 06-07-2017 IPR007848 Methyltransferase small domain GO:0008168 CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 82 1.5E-15 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 Gene3D G3DSA:1.10.10.10 7 83 3.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 Pfam PF01380 SIS domain 139 261 1.5E-18 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 Gene3D G3DSA:3.40.50.10490 115 263 1.1E-13 T 06-07-2017 CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 SUPERFAMILY SSF46689 8 83 2.15E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16180 e5d4e33641a2b0a6292553766453df3e 292 SUPERFAMILY SSF53697 105 286 8.68E-16 T 06-07-2017 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 Gene3D G3DSA:2.30.33.40 2 95 3.7E-39 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 PRINTS PR00297 10kDa chaperonin signature 3 18 1.2E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 PRINTS PR00297 10kDa chaperonin signature 25 46 1.2E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 PRINTS PR00297 10kDa chaperonin signature 60 72 1.2E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 PRINTS PR00297 10kDa chaperonin signature 81 94 1.2E-34 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 SUPERFAMILY SSF50129 1 95 5.46E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 1.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 SMART SM00883 2 94 1.4E-61 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21705 0df70a5ef7fe86b398f67280c52e0210 104 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.994 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS34360 92b186ed5f8afa4d74d30d2586023005 262 SUPERFAMILY SSF56752 2 257 6.28E-58 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS34360 92b186ed5f8afa4d74d30d2586023005 262 Gene3D G3DSA:3.30.470.10 1 97 2.7E-18 T 06-07-2017 CDO28_RS34360 92b186ed5f8afa4d74d30d2586023005 262 Gene3D G3DSA:3.20.10.10 102 257 3.1E-36 T 06-07-2017 CDO28_RS34360 92b186ed5f8afa4d74d30d2586023005 262 Pfam PF01063 Amino-transferase class IV 4 230 3.3E-40 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS31200 92e8dcf5e03c6b259b2cac1d14b2149a 118 Gene3D G3DSA:1.20.5.40 41 74 5.5E-12 T 06-07-2017 CDO28_RS31200 92e8dcf5e03c6b259b2cac1d14b2149a 118 SUPERFAMILY SSF53041 38 75 5.49E-5 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS01520 b0bc83a6bfd09110d0a3e711d9f7c4e3 345 Pfam PF04233 Phage Mu protein F like protein 214 326 2.0E-9 T 06-07-2017 IPR006528 Phage head morphogenesis domain CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 39.486 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Pfam PF01380 SIS domain 459 590 1.2E-35 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Pfam PF01380 SIS domain 292 414 5.6E-26 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Gene3D G3DSA:3.60.20.10 2 232 2.2E-75 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Pfam PF13522 Glutamine amidotransferase domain 66 174 2.7E-20 T 06-07-2017 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 SUPERFAMILY SSF53697 244 608 5.12E-108 T 06-07-2017 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Gene3D G3DSA:3.40.50.10490 244 438 3.1E-56 T 06-07-2017 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 1.1E-234 T 06-07-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 Gene3D G3DSA:3.40.50.10490 439 608 7.2E-66 T 06-07-2017 CDO28_RS23195 011ac1da0df1baab406647ec2e871fc1 608 SUPERFAMILY SSF56235 2 232 1.12E-73 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS32175 bfb0a6c8a9d592d982082337a9387da9 423 Gene3D G3DSA:3.40.190.10 37 153 5.5E-22 T 06-07-2017 CDO28_RS32175 bfb0a6c8a9d592d982082337a9387da9 423 Gene3D G3DSA:3.40.190.10 154 353 5.4E-60 T 06-07-2017 CDO28_RS32175 bfb0a6c8a9d592d982082337a9387da9 423 Pfam PF01547 Bacterial extracellular solute-binding protein 39 333 3.9E-42 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS32175 bfb0a6c8a9d592d982082337a9387da9 423 SUPERFAMILY SSF53850 25 422 8.4E-83 T 06-07-2017 CDO28_RS23840 39463864f5524655893097a8ca023ff2 260 Pfam PF08241 Methyltransferase domain 51 146 2.9E-22 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS23840 39463864f5524655893097a8ca023ff2 260 Gene3D G3DSA:3.40.50.150 6 225 1.3E-34 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS23840 39463864f5524655893097a8ca023ff2 260 SUPERFAMILY SSF53335 6 258 3.56E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 48 107 1.3E-16 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 4 27 4.6E-6 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 SUPERFAMILY SSF53706 41 199 1.18E-53 T 06-07-2017 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 Pfam PF00384 Molybdopterin oxidoreductase 111 168 1.4E-6 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 SMART SM00926 47 108 4.2E-20 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 31 3.4E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 52 70 - T 06-07-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 Gene3D G3DSA:3.40.50.740 113 192 4.7E-16 T 06-07-2017 CDO28_RS20685 43e07ecd5469d12992ede0cb60e31442 199 Gene3D G3DSA:2.20.25.90 43 112 3.3E-23 T 06-07-2017 CDO28_RS28130 2c0a47213addf5ce1d2c55977dbfdfa6 191 SMART SM00318 45 172 3.6E-31 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS28130 2c0a47213addf5ce1d2c55977dbfdfa6 191 Gene3D G3DSA:2.40.50.90 53 144 2.2E-16 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS28130 2c0a47213addf5ce1d2c55977dbfdfa6 191 Pfam PF00565 Staphylococcal nuclease homologue 66 171 2.1E-9 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS28130 2c0a47213addf5ce1d2c55977dbfdfa6 191 SUPERFAMILY SSF50199 53 172 1.83E-25 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 52 178 4.0E-26 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 Pfam PF00107 Zinc-binding dehydrogenase 221 346 8.0E-25 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 SUPERFAMILY SSF50129 34 217 1.17E-58 T 06-07-2017 IPR011032 GroES-like CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 Gene3D G3DSA:3.40.50.720 214 334 3.4E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 SUPERFAMILY SSF50129 340 391 4.62E-9 T 06-07-2017 IPR011032 GroES-like CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 Gene3D G3DSA:3.90.180.10 36 213 1.3E-57 T 06-07-2017 IPR011032 GroES-like CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 SUPERFAMILY SSF51735 183 355 5.04E-44 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 85 99 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS12860 1f20c3f6b8f6ff056558cd965c27dbcb 391 SMART SM00829 35 389 1.1E-5 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS08890 20a77edc463ceb32bd36a89e790365ab 200 Gene3D G3DSA:3.40.50.150 29 163 3.7E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08890 20a77edc463ceb32bd36a89e790365ab 200 Pfam PF13649 Methyltransferase domain 58 147 5.6E-9 T 06-07-2017 CDO28_RS08890 20a77edc463ceb32bd36a89e790365ab 200 SUPERFAMILY SSF53335 20 139 1.31E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS15655 c713efc544627ebe69c8caf473f66406 96 Pfam PF08734 GYD domain 4 92 5.9E-32 T 06-07-2017 IPR014845 Uncharacterised protein GYD CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 9.4E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 Pfam PF03466 LysR substrate binding domain 90 290 3.7E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 SUPERFAMILY SSF46785 3 111 8.56E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 SUPERFAMILY SSF53850 90 294 1.99E-40 T 06-07-2017 CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 Gene3D G3DSA:1.10.10.10 3 83 3.2E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30595 0072ad773ad51995397821862182ecf2 301 Gene3D G3DSA:3.40.190.10 159 258 2.9E-19 T 06-07-2017 CDO28_RS26435 101d4e79492b40e00d3c71f9d5a98d1a 369 SUPERFAMILY SSF53756 2 357 1.12E-58 T 06-07-2017 CDO28_RS26435 101d4e79492b40e00d3c71f9d5a98d1a 369 Pfam PF13692 Glycosyl transferases group 1 185 323 1.5E-26 T 06-07-2017 CDO28_RS26435 101d4e79492b40e00d3c71f9d5a98d1a 369 Pfam PF13439 Glycosyltransferase Family 4 14 173 1.1E-14 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS26435 101d4e79492b40e00d3c71f9d5a98d1a 369 Gene3D G3DSA:3.40.50.2000 177 339 5.4E-18 T 06-07-2017 CDO28_RS02580 8c000426403e73b850ec0b49e406b438 356 Pfam PF13401 AAA domain 69 210 1.7E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02580 8c000426403e73b850ec0b49e406b438 356 Gene3D G3DSA:3.40.50.300 60 188 4.0E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02580 8c000426403e73b850ec0b49e406b438 356 SUPERFAMILY SSF52540 46 239 3.52E-9 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 Gene3D G3DSA:3.50.50.60 6 244 2.7E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 12 29 - T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 Pfam PF01266 FAD dependent oxidoreductase 8 363 1.8E-52 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 390 489 8.0E-11 T 06-07-2017 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 36 48 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 352 364 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 20 30 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 7 19 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 81 93 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 320 326 1.1E-27 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 357 367 - T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 SUPERFAMILY SSF51905 7 267 5.83E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 SUPERFAMILY SSF51905 319 377 5.83E-38 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11990 240f71ea7ceeb65bb6fff992a4fd2dc5 503 SUPERFAMILY SSF54373 233 326 5.89E-6 T 06-07-2017 CDO28_RS28935 0722017243a54b16508806096bf03091 410 Pfam PF08484 C-methyltransferase C-terminal domain 247 405 5.1E-60 T 06-07-2017 IPR013691 C-methyltransferase CDO28_RS28935 0722017243a54b16508806096bf03091 410 Pfam PF08421 Putative zinc binding domain 5 67 1.8E-20 T 06-07-2017 IPR013630 Methyltransferase putative zinc binding domain CDO28_RS28935 0722017243a54b16508806096bf03091 410 SUPERFAMILY SSF53335 70 256 2.72E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28935 0722017243a54b16508806096bf03091 410 Pfam PF13489 Methyltransferase domain 86 240 6.3E-15 T 06-07-2017 CDO28_RS28935 0722017243a54b16508806096bf03091 410 Gene3D G3DSA:3.40.50.150 90 258 1.3E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28935 0722017243a54b16508806096bf03091 410 Gene3D G3DSA:3.40.50.150 378 403 1.3E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 7.1E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.2E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.2E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.2E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 Gene3D G3DSA:3.40.190.10 94 183 2.9E-12 T 06-07-2017 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 SUPERFAMILY SSF46785 4 84 1.13E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 SUPERFAMILY SSF53850 90 298 2.64E-31 T 06-07-2017 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 Pfam PF03466 LysR substrate binding domain 92 297 6.8E-31 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 Gene3D G3DSA:3.40.190.10 184 266 3.4E-11 T 06-07-2017 CDO28_RS29020 bf5830366e0043aa9d3b9e8c046a3974 306 Gene3D G3DSA:1.10.10.10 5 82 5.8E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23570 8822370ce8277bc3ebf475cb7e89223f 483 Gene3D G3DSA:3.40.605.10 5 255 4.5E-76 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23570 8822370ce8277bc3ebf475cb7e89223f 483 Pfam PF00171 Aldehyde dehydrogenase family 13 468 6.3E-154 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23570 8822370ce8277bc3ebf475cb7e89223f 483 SUPERFAMILY SSF53720 3 468 5.76E-153 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS23570 8822370ce8277bc3ebf475cb7e89223f 483 Gene3D G3DSA:3.40.309.10 256 441 1.5E-65 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS23570 8822370ce8277bc3ebf475cb7e89223f 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Gene3D G3DSA:3.30.465.10 325 424 2.1E-27 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 SUPERFAMILY SSF54631 202 339 4.17E-27 T 06-07-2017 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Pfam PF03471 Transporter associated domain 347 424 2.9E-23 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Pfam PF01595 Domain of unknown function DUF21 5 197 2.2E-47 T 06-07-2017 IPR002550 Domain of unknown function DUF21 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 SUPERFAMILY SSF56176 344 427 2.73E-23 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Pfam PF00571 CBS domain 281 330 1.1E-6 T 06-07-2017 IPR000644 CBS domain CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Pfam PF00571 CBS domain 212 268 9.5E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 SMART SM01091 346 426 8.2E-30 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 Gene3D G3DSA:3.10.580.10 198 324 8.9E-17 T 06-07-2017 CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 SMART SM00116 282 330 1.6 T 06-07-2017 IPR000644 CBS domain CDO28_RS01030 6a33af3383cfe13f666339d237e6daaa 430 SMART SM00116 221 270 0.26 T 06-07-2017 IPR000644 CBS domain CDO28_RS24220 4089f9bf0fdbc5a42ae674178b7b4201 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 293 3.2E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24220 4089f9bf0fdbc5a42ae674178b7b4201 301 SUPERFAMILY SSF161098 69 288 1.44E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24220 4089f9bf0fdbc5a42ae674178b7b4201 301 Gene3D G3DSA:1.20.58.370 27 56 3.4E-7 T 06-07-2017 CDO28_RS24220 4089f9bf0fdbc5a42ae674178b7b4201 301 SUPERFAMILY SSF160964 28 61 5.1E-7 T 06-07-2017 CDO28_RS24220 4089f9bf0fdbc5a42ae674178b7b4201 301 Gene3D G3DSA:1.10.3720.10 75 297 8.5E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24765 63288c0851e55768ed1092371272f479 479 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 469 18.281 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDO28_RS24765 63288c0851e55768ed1092371272f479 479 Pfam PF00361 Proton-conducting membrane transporter 126 418 1.5E-78 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24765 63288c0851e55768ed1092371272f479 479 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 12 468 9.3E-160 T 06-07-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDO28_RS17810 8421211066e3938f7ec409a2306e7ac7 275 Gene3D G3DSA:1.10.3470.10 43 233 2.8E-7 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS17810 8421211066e3938f7ec409a2306e7ac7 275 SUPERFAMILY SSF81345 3 256 3.14E-36 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS17810 8421211066e3938f7ec409a2306e7ac7 275 Pfam PF00950 ABC 3 transport family 4 256 3.0E-71 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CDO28_RS23865 d04f78f3de551ff196b8a4ade517372e 150 SUPERFAMILY SSF54427 4 143 3.15E-24 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS23865 d04f78f3de551ff196b8a4ade517372e 150 Pfam PF13577 SnoaL-like domain 10 134 1.1E-18 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS23865 d04f78f3de551ff196b8a4ade517372e 150 Gene3D G3DSA:3.10.450.50 14 138 3.4E-20 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 Gene3D G3DSA:1.10.10.10 11 82 1.8E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 SMART SM00345 19 78 1.8E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 SUPERFAMILY SSF46785 10 82 5.88E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 SUPERFAMILY SSF46785 110 119 5.88E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 77 4.0E-20 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 SUPERFAMILY SSF48008 99 232 3.14E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 Pfam PF07729 FCD domain 102 226 1.3E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 SMART SM00895 102 227 1.4E-20 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 Gene3D G3DSA:1.20.120.530 99 232 4.7E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 2.6E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS21400 a672abadda80a7840cca5b6e937a52d5 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 2.6E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 SMART SM00342 216 299 5.1E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 Pfam PF12833 Helix-turn-helix domain 222 300 6.1E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 SUPERFAMILY SSF46689 199 250 1.43E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 Pfam PF12852 Cupin 2 184 1.6E-34 T 06-07-2017 IPR032783 AraC-type transcription regulator, ligand-binding domain CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 253 295 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 SUPERFAMILY SSF46689 252 300 1.3E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 Gene3D G3DSA:1.10.10.60 254 302 2.2E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 283 299 1.5E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 268 283 1.5E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 Gene3D G3DSA:1.10.10.60 198 253 5.5E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS23870 2015083cf7ca80606487643bade27f2b 327 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 201 245 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS10560 e6831b396e59dd259d694ebaadd82347 266 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 244 2.6E-58 T 06-07-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CDO28_RS10560 e6831b396e59dd259d694ebaadd82347 266 SUPERFAMILY SSF51621 2 252 1.16E-83 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS10560 e6831b396e59dd259d694ebaadd82347 266 Gene3D G3DSA:3.20.20.60 3 252 1.5E-80 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS10560 e6831b396e59dd259d694ebaadd82347 266 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 253 2.5E-112 T 06-07-2017 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 CDO28_RS05440 b8887f13f33edd8aaa44270bc4a39441 148 PIRSF PIRSF002721 2 148 1.4E-49 T 06-07-2017 IPR016364 Surface antigen, Rickettsia type CDO28_RS01755 62f6c29b079a40d147e533e843704371 132 Gene3D G3DSA:3.40.50.1010 1 119 1.2E-4 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS01755 62f6c29b079a40d147e533e843704371 132 SUPERFAMILY SSF88723 1 119 5.33E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS01755 62f6c29b079a40d147e533e843704371 132 Pfam PF01850 PIN domain 4 119 1.8E-8 T 06-07-2017 IPR002716 PIN domain CDO28_RS32700 b2717ce72e654fb7bffcab3d4a6035ea 220 Gene3D G3DSA:1.10.3720.10 13 215 1.1E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32700 b2717ce72e654fb7bffcab3d4a6035ea 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 215 9.9E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32700 b2717ce72e654fb7bffcab3d4a6035ea 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 3.9E-29 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS32700 b2717ce72e654fb7bffcab3d4a6035ea 220 SUPERFAMILY SSF161098 13 200 6.41E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32700 b2717ce72e654fb7bffcab3d4a6035ea 220 TIGRFAM TIGR03003 ectoine_ehuD: ectoine/hydroxyectoine ABC transporter, permease protein EhuD 3 214 7.7E-116 T 06-07-2017 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 SUPERFAMILY SSF46689 255 302 5.38E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 SUPERFAMILY SSF46689 202 252 1.97E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 Gene3D G3DSA:1.10.10.60 258 299 8.0E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 SMART SM00342 219 302 5.7E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 Pfam PF12833 Helix-turn-helix domain 225 298 6.4E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 Gene3D G3DSA:1.10.10.60 198 257 1.1E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32300 078de239d45f1c97adc5458f910c6543 318 Pfam PF06719 AraC-type transcriptional regulator N-terminus 39 190 2.4E-40 T 06-07-2017 IPR009594 Transcription regulator HTH, AraC, N-terminal CDO28_RS27335 c7b6b0e12b3802a08fa425b462cfe589 327 SUPERFAMILY SSF53822 37 320 2.51E-78 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27335 c7b6b0e12b3802a08fa425b462cfe589 327 Gene3D G3DSA:3.40.50.2300 163 319 4.4E-49 T 06-07-2017 CDO28_RS27335 c7b6b0e12b3802a08fa425b462cfe589 327 Pfam PF13407 Periplasmic binding protein domain 41 302 3.9E-54 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS27335 c7b6b0e12b3802a08fa425b462cfe589 327 Gene3D G3DSA:3.40.50.2300 35 162 3.2E-32 T 06-07-2017 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 Gene3D G3DSA:3.40.50.1580 190 480 1.5E-113 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 Gene3D G3DSA:3.30.1730.10 20 186 5.1E-59 T 06-07-2017 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 Hamap MF_01932 AMP nucleosidase [amn]. 20 500 61.614 T 06-07-2017 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 SUPERFAMILY SSF53167 26 500 1.26E-149 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 29 183 3.2E-52 T 06-07-2017 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 28 500 1.4E-226 T 06-07-2017 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CDO28_RS05305 22c728bfddd76b58d3abeee7a9a431c8 500 Pfam PF01048 Phosphorylase superfamily 283 444 2.0E-12 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00412 Epoxide hydrolase signature 257 279 1.4E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00412 Epoxide hydrolase signature 124 137 1.4E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00412 Epoxide hydrolase signature 110 123 1.4E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00412 Epoxide hydrolase signature 45 63 1.4E-5 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 Pfam PF12697 Alpha/beta hydrolase family 41 273 1.4E-21 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 3.9E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 79 3.9E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 3.9E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 SUPERFAMILY SSF53474 28 281 8.64E-47 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19345 97e0d0a6aaa3f7a795341b9d4c123da3 283 Gene3D G3DSA:3.40.50.1820 26 281 7.1E-47 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 SUPERFAMILY SSF48592 406 522 2.0E-78 T 06-07-2017 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 SUPERFAMILY SSF48592 7 134 2.0E-78 T 06-07-2017 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 SUPERFAMILY SSF52029 184 376 1.1E-86 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 Gene3D G3DSA:1.10.560.10 367 519 5.7E-44 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 06-07-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 Gene3D G3DSA:3.50.7.10 188 366 8.5E-104 T 06-07-2017 IPR027409 GroEL-like apical domain CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 42.394 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 4.0E-263 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 SUPERFAMILY SSF54849 138 196 3.36E-21 T 06-07-2017 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 Gene3D G3DSA:1.10.560.10 3 187 1.1E-46 T 06-07-2017 IPR027413 GroEL-like equatorial domain CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 1.1E-101 T 06-07-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS27765 f94d7bdf370500cdd9661053f75984a5 542 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 06-07-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 43 433 6.2E-121 T 06-07-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 Pfam PF01494 FAD binding domain 42 360 1.8E-32 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 Gene3D G3DSA:3.50.50.60 311 399 2.6E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 Gene3D G3DSA:3.50.50.60 42 111 2.6E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 Gene3D G3DSA:3.50.50.60 146 225 2.6E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 43 65 5.6E-18 T 06-07-2017 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 354 5.6E-18 T 06-07-2017 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 5.6E-18 T 06-07-2017 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 5.6E-18 T 06-07-2017 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 SUPERFAMILY SSF51905 42 220 1.89E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS11410 986234af630e58eab97bf6e7b50d46fc 448 SUPERFAMILY SSF51905 310 428 1.89E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82714 185 274 1.31E-21 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Pfam PF00873 AcrB/AcrD/AcrF family 4 1039 0.0 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82866 844 1039 3.79E-45 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:1.10.3850.10 827 1040 7.2E-59 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:3.30.70.1430 40 141 1.6E-33 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 40 134 2.28E-27 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:3.30.2090.10 184 277 1.4E-27 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 685 734 1.88E-24 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 821 870 1.88E-24 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 277 333 4.53E-26 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 137 184 4.53E-26 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 634 648 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 PRINTS PR00702 Acriflavin resistance protein family signature 565 582 3.1E-88 T 06-07-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:3.30.70.1430 580 684 3.3E-29 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:1.20.1640.10 296 508 3.7E-61 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1043 0.0 T 06-07-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82866 299 500 7.98E-50 T 06-07-2017 CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 Gene3D G3DSA:3.30.2090.10 735 821 5.1E-19 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82714 735 820 5.36E-19 T 06-07-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDO28_RS13345 84a4b0860ee36e960a238f9c89c5b2bd 1058 SUPERFAMILY SSF82693 579 684 2.82E-25 T 06-07-2017 CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SUPERFAMILY SSF81901 50 257 1.31E-41 T 06-07-2017 CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Gene3D G3DSA:1.25.40.10 54 258 8.1E-46 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SMART SM00671 148 183 19.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SMART SM00671 75 110 7.5E-8 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SMART SM00671 220 255 2.5 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SMART SM00671 184 219 7.9E-8 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 SMART SM00671 111 147 4.2E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Pfam PF08238 Sel1 repeat 113 147 1.9E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Pfam PF08238 Sel1 repeat 75 110 5.9E-7 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Pfam PF08238 Sel1 repeat 184 219 2.4E-9 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Pfam PF08238 Sel1 repeat 149 182 0.0047 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS20715 6dc2810673fddac30d60c778aa6a417d 290 Pfam PF08238 Sel1 repeat 220 255 0.014 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 87 97 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 253 271 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 66 84 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 276 289 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 329 344 3.4E-28 T 06-07-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 Gene3D G3DSA:3.40.50.2300 24 223 4.7E-67 T 06-07-2017 CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 Pfam PF13458 Periplasmic binding protein 25 363 2.4E-65 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS05950 d4f31d04ed3ec71128ebce1a0cf2acaf 368 SUPERFAMILY SSF53822 24 367 5.5E-92 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Pfam PF13401 AAA domain 247 367 1.7E-6 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 187 2.3E-32 T 06-07-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 SMART SM00382 246 419 5.2E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Gene3D G3DSA:3.40.50.300 249 368 1.5E-8 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Gene3D G3DSA:3.40.50.1000 4 71 1.3E-31 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Gene3D G3DSA:3.40.50.1000 135 217 1.3E-31 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 SUPERFAMILY SSF52540 229 369 1.08E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 SUPERFAMILY SSF56784 5 217 7.03E-39 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 102 1.9E-10 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS17040 fd1f8bfcfce2a75ca94e3fbe9cc0c497 570 Pfam PF08282 haloacid dehalogenase-like hydrolase 135 211 1.5E-13 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS07515 da9320066fd4a93988c3343e6e536c55 430 SUPERFAMILY SSF51658 51 407 4.65E-83 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS07515 da9320066fd4a93988c3343e6e536c55 430 Gene3D G3DSA:3.20.20.150 12 419 7.5E-89 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS07515 da9320066fd4a93988c3343e6e536c55 430 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 115 369 2.0E-4 T 06-07-2017 CDO28_RS07515 da9320066fd4a93988c3343e6e536c55 430 TIGRFAM TIGR02629 L_rham_iso_rhiz: L-rhamnose catabolism isomerase 9 421 2.6E-275 T 06-07-2017 IPR013451 L-rhamnose catabolism isomerase CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 185 353 4.18E-17 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 88 203 1.83E-14 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 330 466 1.83E-15 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 643 666 2.9E-10 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1296 1319 1.4E-9 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1108 1128 1.7E-8 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 774 797 4.2E-9 T 06-07-2017 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 857 967 1.57E-16 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 629 671 2.09E-28 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 449 593 2.09E-28 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 977 1131 1.7E-24 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF54523 1413 1501 2.2E-20 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF54523 1378 1386 2.2E-20 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF03895 YadA-like C-terminal region 1427 1502 2.1E-15 T 06-07-2017 IPR005594 YadA-like, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1204 1230 5.5E-5 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05658 Head domain of trimeric autotransporter adhesin 861 887 7.9E-6 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05658 Head domain of trimeric autotransporter adhesin 710 736 4.5E-4 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05658 Head domain of trimeric autotransporter adhesin 293 318 2.8E-5 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1232 1258 7.0E-5 T 06-07-2017 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:3.30.1300.30 1378 1502 1.6E-23 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 689 802 3.92E-16 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 SUPERFAMILY SSF101967 1181 1323 1.83E-22 T 06-07-2017 CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 706 802 3.0E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 217 324 1.7E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 465 671 1.5E-36 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 93 216 2.7E-20 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 1201 1323 3.8E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 986 1131 7.7E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 850 966 7.0E-20 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS21600 726464f299761c3995c9df5ddec15d2f 1504 Gene3D G3DSA:2.150.10.10 325 464 2.8E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.1E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.1E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 Gene3D G3DSA:1.10.10.60 7 49 1.6E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 SUPERFAMILY SSF46689 9 91 3.95E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 4.0E-14 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 Gene3D G3DSA:1.10.10.60 50 71 1.2E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 SUPERFAMILY SSF48498 86 211 1.58E-35 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS30755 0a2688f40655342fbbcf84e84b99497d 220 Gene3D G3DSA:1.10.357.10 72 207 2.7E-27 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS04320 64e6f17c2d8c38a6a89743ec7a64733f 389 Gene3D G3DSA:3.40.50.2000 202 348 1.7E-21 T 06-07-2017 CDO28_RS04320 64e6f17c2d8c38a6a89743ec7a64733f 389 Pfam PF13439 Glycosyltransferase Family 4 16 191 4.3E-22 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS04320 64e6f17c2d8c38a6a89743ec7a64733f 389 SUPERFAMILY SSF53756 12 375 2.3E-62 T 06-07-2017 CDO28_RS04320 64e6f17c2d8c38a6a89743ec7a64733f 389 Pfam PF13692 Glycosyl transferases group 1 204 338 6.5E-23 T 06-07-2017 CDO28_RS08760 744be3b59bab9fcd598bf929cb03db81 152 Pfam PF02082 Transcriptional regulator 1 80 9.6E-23 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS08760 744be3b59bab9fcd598bf929cb03db81 152 Gene3D G3DSA:1.10.10.10 1 139 1.9E-43 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08760 744be3b59bab9fcd598bf929cb03db81 152 SUPERFAMILY SSF46785 3 135 1.94E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS34575 9a8f4b523903420fe92b219b254d2399 79 Gene3D G3DSA:1.10.260.40 16 76 1.3E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS34575 9a8f4b523903420fe92b219b254d2399 79 SMART SM00530 22 76 5.8E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS34575 9a8f4b523903420fe92b219b254d2399 79 Pfam PF13560 Helix-turn-helix domain 19 74 8.1E-8 T 06-07-2017 CDO28_RS34575 9a8f4b523903420fe92b219b254d2399 79 SUPERFAMILY SSF47413 16 76 1.19E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 186 0.0019 T 06-07-2017 CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 247 6.6E-63 T 06-07-2017 CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 Gene3D G3DSA:3.40.50.720 2 248 3.7E-81 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 SUPERFAMILY SSF51735 5 248 4.08E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28600 e7f9ef5e6f1175a58fa3918dd7177eea 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.5E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11345 59c2b42a29852e2e189ccde94e903970 300 SUPERFAMILY SSF53067 12 295 2.54E-28 T 06-07-2017 CDO28_RS11345 59c2b42a29852e2e189ccde94e903970 300 Pfam PF00480 ROK family 14 295 1.3E-29 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS11345 59c2b42a29852e2e189ccde94e903970 300 Gene3D G3DSA:3.30.420.40 10 141 8.4E-19 T 06-07-2017 CDO28_RS11345 59c2b42a29852e2e189ccde94e903970 300 Gene3D G3DSA:3.30.420.40 142 254 1.2E-18 T 06-07-2017 CDO28_RS24010 095dc5bdf9283ce10423af55ef56c575 103 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 25 98 4.0E-28 T 06-07-2017 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 CDO28_RS00585 a9ae3dd8cc3af21181e267d416ccfe0e 104 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 18 53 9.4E-10 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS00585 a9ae3dd8cc3af21181e267d416ccfe0e 104 SMART SM00966 14 59 0.0037 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS00585 a9ae3dd8cc3af21181e267d416ccfe0e 104 SUPERFAMILY SSF89447 18 53 6.45E-6 T 06-07-2017 CDO28_RS00585 a9ae3dd8cc3af21181e267d416ccfe0e 104 Gene3D G3DSA:2.10.260.10 18 52 4.2E-5 T 06-07-2017 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 SUPERFAMILY SSF63999 6 128 2.75E-21 T 06-07-2017 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 Gene3D G3DSA:3.40.50.10240 6 128 1.7E-16 T 06-07-2017 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 150 202 5.6E-6 T 06-07-2017 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 29 122 3.3E-12 T 06-07-2017 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 SMART SM00983 142 205 1.2E-15 T 06-07-2017 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS11085 8c9f269a79eca283474cb5efd2090aab 216 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 7 206 1.4E-43 T 06-07-2017 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 SUPERFAMILY SSF51735 1 321 1.22E-85 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 326 1.7E-125 T 06-07-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 Gene3D G3DSA:3.40.50.720 1 170 4.7E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 Gene3D G3DSA:3.90.25.10 171 223 8.5E-39 T 06-07-2017 CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 Gene3D G3DSA:3.90.25.10 255 323 8.5E-39 T 06-07-2017 CDO28_RS07795 ee5a08ce821bba6ca78ea6b7abdacdc3 342 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 253 1.1E-53 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS21020 5ee0611a8ecc5f0f9bf11ed1530787b5 112 Gene3D G3DSA:1.10.1660.10 15 102 3.0E-5 T 06-07-2017 CDO28_RS21020 5ee0611a8ecc5f0f9bf11ed1530787b5 112 Pfam PF13591 MerR HTH family regulatory protein 15 84 4.8E-11 T 06-07-2017 CDO28_RS14195 e8e7f73745ec8e8e47bb73a7a06d9159 316 SUPERFAMILY SSF161098 99 299 3.4E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14195 e8e7f73745ec8e8e47bb73a7a06d9159 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 316 1.9E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14195 e8e7f73745ec8e8e47bb73a7a06d9159 316 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 64 3.5E-11 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS14195 e8e7f73745ec8e8e47bb73a7a06d9159 316 Gene3D G3DSA:1.10.3720.10 95 313 1.5E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19795 1e354335cf98da61a23a3414c75da925 365 Gene3D G3DSA:1.10.3720.10 155 360 2.3E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19795 1e354335cf98da61a23a3414c75da925 365 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 155 251 5.8E-14 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS19795 1e354335cf98da61a23a3414c75da925 365 SUPERFAMILY SSF161098 155 351 9.16E-34 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19795 1e354335cf98da61a23a3414c75da925 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 172 359 4.2E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31990 9561142c9a9bf82c07751e5465045c4c 263 Gene3D G3DSA:1.10.3720.10 13 262 4.4E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31990 9561142c9a9bf82c07751e5465045c4c 263 SUPERFAMILY SSF161098 10 261 1.4E-48 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31990 9561142c9a9bf82c07751e5465045c4c 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 260 4.0E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 SUPERFAMILY SSF54368 13 117 2.09E-6 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 Pfam PF00120 Glutamine synthetase, catalytic domain 119 451 5.9E-101 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 SMART SM01230 118 372 4.8E-103 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 Gene3D G3DSA:3.10.20.70 13 121 8.8E-4 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 SUPERFAMILY SSF55931 120 453 8.83E-108 T 06-07-2017 CDO28_RS14645 e3c39b3a7b2601a8c4be59a89c95a7fb 455 Gene3D G3DSA:3.30.590.10 122 442 3.2E-96 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS00595 740f4af1bebd90ad8ce8dc5a661313e0 388 SUPERFAMILY SSF53383 5 378 8.64E-85 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS00595 740f4af1bebd90ad8ce8dc5a661313e0 388 Gene3D G3DSA:3.90.1150.10 254 376 3.3E-33 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS00595 740f4af1bebd90ad8ce8dc5a661313e0 388 PIRSF PIRSF005572 3 384 7.4E-113 T 06-07-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CDO28_RS00595 740f4af1bebd90ad8ce8dc5a661313e0 388 Gene3D G3DSA:3.40.640.10 18 253 1.3E-62 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS00595 740f4af1bebd90ad8ce8dc5a661313e0 388 Pfam PF00266 Aminotransferase class-V 6 369 9.6E-54 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Gene3D G3DSA:2.40.50.140 283 342 4.4E-10 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 SMART SM00382 28 211 2.2E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Pfam PF00005 ABC transporter 19 161 1.9E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 SUPERFAMILY SSF52540 4 242 1.18E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Gene3D G3DSA:2.40.50.100 343 357 2.1E-7 T 06-07-2017 CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Gene3D G3DSA:2.40.50.100 239 282 2.1E-7 T 06-07-2017 CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Gene3D G3DSA:3.40.50.300 3 238 2.3E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 SUPERFAMILY SSF50331 236 358 2.67E-25 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 Pfam PF08402 TOBE domain 278 349 2.8E-7 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS26355 179eb07ffd16d0fb2c2f4280eae26515 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS06915 d75e931019a26334dd60607027e6deec 82 Pfam PF13488 Glycine zipper 23 62 3.7E-10 T 06-07-2017 CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 22 180 1.7E-27 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 Pfam PF00990 Diguanylate cyclase, GGDEF domain 22 176 5.6E-34 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 Gene3D G3DSA:3.20.20.450 194 440 6.7E-84 T 06-07-2017 IPR001633 EAL domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 Pfam PF00563 EAL domain 197 428 5.0E-67 T 06-07-2017 IPR001633 EAL domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 SMART SM00267 9 181 2.4E-33 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 SUPERFAMILY SSF55073 25 183 1.88E-38 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 SUPERFAMILY SSF141868 196 441 1.01E-80 T 06-07-2017 IPR001633 EAL domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 SMART SM00052 191 433 7.0E-84 T 06-07-2017 IPR001633 EAL domain CDO28_RS06505 e397af3ce5a0016dc93a1d5153848bdc 448 Gene3D G3DSA:3.30.70.270 22 189 3.2E-46 T 06-07-2017 CDO28_RS06265 703e2ec03914c7a00c298fd2f390a56b 318 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 93 115 - T 06-07-2017 IPR030470 UbiA prenyltransferase conserved site CDO28_RS06265 703e2ec03914c7a00c298fd2f390a56b 318 Pfam PF01040 UbiA prenyltransferase family 46 297 2.1E-55 T 06-07-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 CDO28_RS06265 703e2ec03914c7a00c298fd2f390a56b 318 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 27 313 3.4E-120 T 06-07-2017 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CDO28_RS06265 703e2ec03914c7a00c298fd2f390a56b 318 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 22 314 27.264 T 06-07-2017 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 Pfam PF00171 Aldehyde dehydrogenase family 13 477 5.6E-174 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 Gene3D G3DSA:3.40.605.10 2 263 3.7E-95 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 Gene3D G3DSA:3.40.309.10 264 442 2.8E-70 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 249 256 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS23555 21aa7781e9a7b3130921966371b58b5a 493 SUPERFAMILY SSF53720 2 480 4.71E-167 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS04685 87ecd060a259328a0716d95c8a4ad671 170 Pfam PF05163 DinB family 1 166 5.1E-38 T 06-07-2017 IPR007837 DNA damage-inducible protein DinB CDO28_RS04685 87ecd060a259328a0716d95c8a4ad671 170 Gene3D G3DSA:1.20.120.450 1 160 2.4E-36 T 06-07-2017 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase CDO28_RS04685 87ecd060a259328a0716d95c8a4ad671 170 SUPERFAMILY SSF109854 3 145 1.47E-36 T 06-07-2017 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 Pfam PF00561 alpha/beta hydrolase fold 61 157 4.6E-23 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 Pfam PF00561 alpha/beta hydrolase fold 223 283 3.8E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 Gene3D G3DSA:3.40.50.1820 36 295 1.7E-62 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 99 2.1E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 240 254 2.1E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 2.1E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 2.1E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS25270 49739fb4d7cd1d03eb8dfeaa254fb514 296 SUPERFAMILY SSF53474 38 295 3.11E-60 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15940 ba77a0eda5754f08aa1be5283a0f8d67 307 Gene3D G3DSA:3.40.50.1820 4 303 1.6E-76 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15940 ba77a0eda5754f08aa1be5283a0f8d67 307 Pfam PF07859 alpha/beta hydrolase fold 84 280 3.6E-63 T 06-07-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CDO28_RS15940 ba77a0eda5754f08aa1be5283a0f8d67 307 SUPERFAMILY SSF53474 34 291 4.38E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15940 ba77a0eda5754f08aa1be5283a0f8d67 307 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 84 100 - T 06-07-2017 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 Reactome: R-HSA-163560 CDO28_RS09270 1dac7738438f8b1fdda2debee9c13dd9 348 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 122 299 1.6E-39 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS09270 1dac7738438f8b1fdda2debee9c13dd9 348 Gene3D G3DSA:3.40.50.720 27 129 2.0E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09270 1dac7738438f8b1fdda2debee9c13dd9 348 SUPERFAMILY SSF51735 116 300 2.86E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09270 1dac7738438f8b1fdda2debee9c13dd9 348 SUPERFAMILY SSF52283 28 143 2.14E-11 T 06-07-2017 CDO28_RS09270 1dac7738438f8b1fdda2debee9c13dd9 348 Gene3D G3DSA:3.40.50.720 130 300 7.3E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33005 5d71faa6cb96c701459c1754fb8c958c 331 Pfam PF00248 Aldo/keto reductase family 20 322 1.4E-65 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS33005 5d71faa6cb96c701459c1754fb8c958c 331 SUPERFAMILY SSF51430 8 323 2.88E-91 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS33005 5d71faa6cb96c701459c1754fb8c958c 331 Gene3D G3DSA:3.20.20.100 8 322 5.2E-90 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS33005 5d71faa6cb96c701459c1754fb8c958c 331 PRINTS PR00069 Aldo-keto reductase signature 122 140 3.9E-8 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS33005 5d71faa6cb96c701459c1754fb8c958c 331 PRINTS PR00069 Aldo-keto reductase signature 153 170 3.9E-8 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS02530 d07cf31c9ccf0c481f5ddcf6e0eb728d 380 Gene3D G3DSA:3.90.226.10 59 155 1.1E-4 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS02530 d07cf31c9ccf0c481f5ddcf6e0eb728d 380 SUPERFAMILY SSF52096 56 131 6.46E-8 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS02530 d07cf31c9ccf0c481f5ddcf6e0eb728d 380 SMART SM00287 228 292 0.0079 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS02530 d07cf31c9ccf0c481f5ddcf6e0eb728d 380 Pfam PF06347 Bacterial SH3 domain 237 289 3.0E-8 T 06-07-2017 IPR010466 Protein of unknown function DUF1058 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 188 198 - T 06-07-2017 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 Pfam PF01177 Asp/Glu/Hydantoin racemase 9 223 4.4E-15 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 SUPERFAMILY SSF53681 114 264 3.05E-29 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 SUPERFAMILY SSF53681 8 111 2.29E-25 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 TIGRFAM TIGR00067 glut_race: glutamate racemase 9 226 1.0E-47 T 06-07-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 Hamap MF_00258 Glutamate racemase [murI]. 7 263 30.025 T 06-07-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS00320 38e9d64e766aff754f1dbbb20c5ed9c9 277 Gene3D G3DSA:3.40.50.1860 7 176 1.2E-39 T 06-07-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 ProSitePatterns PS00216 Sugar transport proteins signature 1. 69 85 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 109 130 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 283 304 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 226 243 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 139 161 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 308 328 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 167 187 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 20 36 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 82 106 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 343 366 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 PRINTS PR01035 Tetracycline resistance protein signature 255 275 2.2E-63 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 SUPERFAMILY SSF103473 4 400 9.55E-67 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 Pfam PF07690 Major Facilitator Superfamily 14 359 8.9E-49 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 Gene3D G3DSA:1.20.1250.20 8 197 9.8E-46 T 06-07-2017 CDO28_RS02285 d89a0dc00379f3d32256f3c6271ae358 415 Gene3D G3DSA:1.20.1250.20 218 399 6.2E-13 T 06-07-2017 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 SMART SM00347 24 122 6.0E-23 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 Pfam PF01047 MarR family 31 89 6.7E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.8E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.8E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.8E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 SUPERFAMILY SSF46785 1 133 1.74E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14805 d871d9bad9ac9e8303e836f218675c8e 138 Gene3D G3DSA:1.10.10.10 1 135 4.2E-42 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24880 f7c38152dddae53041b2efd305d24204 431 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 30 76 2.5E-11 T 06-07-2017 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal CDO28_RS27240 e43bc55c309e5ceb3e678222454d5910 187 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 8 178 1.5E-67 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS27240 e43bc55c309e5ceb3e678222454d5910 187 Gene3D G3DSA:2.60.120.10 3 180 1.3E-72 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS27240 e43bc55c309e5ceb3e678222454d5910 187 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 5 179 9.1E-62 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS27240 e43bc55c309e5ceb3e678222454d5910 187 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 4 179 8.0E-88 T 06-07-2017 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDO28_RS27240 e43bc55c309e5ceb3e678222454d5910 187 SUPERFAMILY SSF51182 2 181 2.67E-70 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 SMART SM00347 49 148 3.7E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 SUPERFAMILY SSF46785 23 164 1.57E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 105 3.5E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 89 3.5E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 109 125 3.5E-10 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 ProSitePatterns PS01117 MarR-type HTH domain signature. 88 122 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 Gene3D G3DSA:1.10.10.10 29 166 1.4E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18790 153681caf64747110a21eedd1ea53c52 173 Pfam PF01047 MarR family 58 113 2.3E-13 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 SMART SM00382 32 230 1.9E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 Pfam PF00005 ABC transporter 23 182 1.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 PIRSF PIRSF039085 4 257 1.3E-115 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 SUPERFAMILY SSF52540 8 252 8.44E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 Gene3D G3DSA:3.40.50.300 7 254 7.4E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07755 97fbc784b309424cb3134e3fb64471cd 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23945 9ff65862b428974c2e6f7e6460d2cbe5 426 Gene3D G3DSA:1.20.1250.20 227 409 1.3E-25 T 06-07-2017 CDO28_RS23945 9ff65862b428974c2e6f7e6460d2cbe5 426 Gene3D G3DSA:1.20.1250.20 15 204 1.1E-30 T 06-07-2017 CDO28_RS23945 9ff65862b428974c2e6f7e6460d2cbe5 426 Pfam PF07690 Major Facilitator Superfamily 22 370 1.3E-41 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS23945 9ff65862b428974c2e6f7e6460d2cbe5 426 ProSitePatterns PS00216 Sugar transport proteins signature 1. 284 299 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS23945 9ff65862b428974c2e6f7e6460d2cbe5 426 SUPERFAMILY SSF103473 13 408 1.15E-62 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS08480 8e4aedba49cbb42fab4c1d1f96521aec 232 Gene3D G3DSA:3.40.50.150 41 183 2.8E-10 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08480 8e4aedba49cbb42fab4c1d1f96521aec 232 SUPERFAMILY SSF53335 51 230 3.77E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08480 8e4aedba49cbb42fab4c1d1f96521aec 232 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 15 232 27.155 T 06-07-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CDO28_RS08480 8e4aedba49cbb42fab4c1d1f96521aec 232 Pfam PF02390 Putative methyltransferase 60 223 1.1E-37 T 06-07-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CDO28_RS11775 3d085c2fe86a67ddda59f3809da53a98 88 SUPERFAMILY SSF47413 2 79 3.1E-25 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS11775 3d085c2fe86a67ddda59f3809da53a98 88 Pfam PF01381 Helix-turn-helix 10 60 2.8E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS11775 3d085c2fe86a67ddda59f3809da53a98 88 SMART SM00530 6 61 4.8E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS11775 3d085c2fe86a67ddda59f3809da53a98 88 Gene3D G3DSA:1.10.260.40 2 75 1.0E-31 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS11775 3d085c2fe86a67ddda59f3809da53a98 88 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 2 75 4.2E-31 T 06-07-2017 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 CDO28_RS01480 2c83109af4bd0623c98cdcab80a8d5f2 322 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 66 319 5.5E-67 T 06-07-2017 IPR020049 Protein of unknown function DUF2184 CDO28_RS01480 2c83109af4bd0623c98cdcab80a8d5f2 322 PIRSF PIRSF029202 4 319 1.7E-61 T 06-07-2017 IPR020049 Protein of unknown function DUF2184 CDO28_RS16165 30c33f2809329fdeaaa16f8ee8e6da83 262 Gene3D G3DSA:1.10.3720.10 5 253 4.9E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16165 30c33f2809329fdeaaa16f8ee8e6da83 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 245 7.9E-7 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16165 30c33f2809329fdeaaa16f8ee8e6da83 262 SUPERFAMILY SSF161098 3 254 1.96E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22875 b37e4be471f6759f617636c1a2d4b1b8 277 Pfam PF12697 Alpha/beta hydrolase family 36 264 3.5E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS22875 b37e4be471f6759f617636c1a2d4b1b8 277 Gene3D G3DSA:3.40.50.1820 25 270 3.3E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22875 b37e4be471f6759f617636c1a2d4b1b8 277 SUPERFAMILY SSF53474 25 272 1.32E-49 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 SUPERFAMILY SSF103473 15 339 9.55E-52 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 Pfam PF00083 Sugar (and other) transporter 24 333 3.6E-28 T 06-07-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 Pfam PF00083 Sugar (and other) transporter 515 627 2.5E-6 T 06-07-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 Gene3D G3DSA:1.20.1250.20 526 623 1.3E-26 T 06-07-2017 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 Gene3D G3DSA:1.20.1250.20 20 228 3.3E-22 T 06-07-2017 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 Gene3D G3DSA:1.20.1250.20 251 339 1.3E-26 T 06-07-2017 CDO28_RS10795 acfd6a1adff540e12532d518508dbc9a 629 SUPERFAMILY SSF103473 523 625 3.01E-11 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 312 467 9.9E-21 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 602 687 6.8E-17 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 503 570 1.0E-5 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 59 179 2.6E-26 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 SMART SM01008 214 294 4.3E-17 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Gene3D G3DSA:3.90.1170.50 198 275 4.9E-24 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Gene3D G3DSA:3.30.365.10 58 197 8.6E-39 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 214 261 7.8E-8 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 SUPERFAMILY SSF56003 500 743 2.91E-118 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 SUPERFAMILY SSF56003 321 464 2.91E-118 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 PIRSF PIRSF036389 1 742 2.5E-251 T 06-07-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 SUPERFAMILY SSF56003 53 247 8.2E-43 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Gene3D G3DSA:3.30.365.10 385 565 4.2E-37 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS32610 d3775d7ef51417e3c7b0aa12deb0dc92 746 Gene3D G3DSA:3.30.365.10 566 744 4.9E-43 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 Gene3D G3DSA:3.40.50.720 6 255 2.1E-57 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.3E-31 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 SUPERFAMILY SSF51735 8 255 1.13E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25005 3da5582c445d7e27fe390150d9a7d227 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 254 9.1E-40 T 06-07-2017 CDO28_RS01080 a8bc03e312478f5a62b489ead18bf31c 165 Pfam PF13527 Acetyltransferase (GNAT) domain 3 127 1.2E-11 T 06-07-2017 CDO28_RS01080 a8bc03e312478f5a62b489ead18bf31c 165 Gene3D G3DSA:3.40.630.30 1 147 5.4E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS01080 a8bc03e312478f5a62b489ead18bf31c 165 SUPERFAMILY SSF55729 1 148 4.29E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS12060 6afd4a2968f7f225b5b15996b691d1bd 159 SUPERFAMILY SSF54593 14 143 7.92E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12060 6afd4a2968f7f225b5b15996b691d1bd 159 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 19 138 1.9E-8 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS12060 6afd4a2968f7f225b5b15996b691d1bd 159 Gene3D G3DSA:3.10.180.10 23 141 3.5E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 Gene3D G3DSA:3.30.565.10 281 426 4.9E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 6.7E-6 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 6.7E-6 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 SUPERFAMILY SSF47384 199 271 3.34E-8 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 272 6.9E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 SMART SM00387 315 426 1.1E-21 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 421 1.3E-14 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 SUPERFAMILY SSF55874 274 425 2.23E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 SMART SM00388 209 275 1.1E-9 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS10305 6ab1b1c09c3b3975f333ac4d59b340c7 433 Gene3D G3DSA:1.10.287.130 204 270 9.5E-6 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 Gene3D G3DSA:2.40.110.10 186 277 1.1E-21 T 06-07-2017 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 SUPERFAMILY SSF56645 54 299 1.0E-33 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 186 280 1.7E-16 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 291 445 2.6E-31 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 Gene3D G3DSA:1.20.140.10 278 447 2.4E-41 T 06-07-2017 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 SUPERFAMILY SSF47203 295 448 6.93E-41 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS03925 ed32959ca23f021da3dd47f947d1ba7b 550 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 404 423 - T 06-07-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 Gene3D G3DSA:3.60.10.10 2 255 1.3E-76 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 SUPERFAMILY SSF56219 2 255 1.19E-77 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 248 8.3E-23 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 255 4.2E-71 T 06-07-2017 CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 06-07-2017 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 CDO28_RS01115 6250567d9610f676c06cc59efaac924e 264 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 255 3.0E-68 T 06-07-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CDO28_RS08070 eac57c87dbbd7317ed5b62962768be71 203 SUPERFAMILY SSF69593 28 199 1.01E-22 T 06-07-2017 CDO28_RS08070 eac57c87dbbd7317ed5b62962768be71 203 Pfam PF01553 Acyltransferase 30 146 2.3E-12 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS08070 eac57c87dbbd7317ed5b62962768be71 203 Gene3D G3DSA:3.40.1130.10 30 192 1.7E-10 T 06-07-2017 CDO28_RS08070 eac57c87dbbd7317ed5b62962768be71 203 SMART SM00563 30 151 1.4E-9 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS04595 bde5f8585c84ddbe77a15affa0d67459 198 SUPERFAMILY SSF55811 14 193 4.06E-40 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS04595 bde5f8585c84ddbe77a15affa0d67459 198 Pfam PF00293 NUDIX domain 48 168 1.2E-10 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS04595 bde5f8585c84ddbe77a15affa0d67459 198 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 10 189 1.7E-41 T 06-07-2017 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 CDO28_RS04595 bde5f8585c84ddbe77a15affa0d67459 198 Gene3D G3DSA:3.90.79.10 9 193 2.9E-51 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS04900 c0107463460cbb0372609118d8b217f5 232 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 15 221 1.3E-60 T 06-07-2017 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 CDO28_RS04900 c0107463460cbb0372609118d8b217f5 232 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 13 221 38.283 T 06-07-2017 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 CDO28_RS04900 c0107463460cbb0372609118d8b217f5 232 Pfam PF02666 Phosphatidylserine decarboxylase 46 217 1.1E-30 T 06-07-2017 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CDO28_RS08410 9a85cbd30e868ce8665ca51c7475e97b 402 Gene3D G3DSA:2.40.50.100 78 112 1.7E-24 T 06-07-2017 CDO28_RS08410 9a85cbd30e868ce8665ca51c7475e97b 402 Gene3D G3DSA:2.40.50.100 187 219 1.7E-24 T 06-07-2017 CDO28_RS08410 9a85cbd30e868ce8665ca51c7475e97b 402 SUPERFAMILY SSF111369 67 313 2.22E-64 T 06-07-2017 CDO28_RS08410 9a85cbd30e868ce8665ca51c7475e97b 402 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 80 309 3.2E-17 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS08410 9a85cbd30e868ce8665ca51c7475e97b 402 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 54 390 2.1E-86 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS11540 1e350d7ba34a47f0d7897393ebe18308 195 Gene3D G3DSA:3.40.50.620 8 192 1.7E-46 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS11540 1e350d7ba34a47f0d7897393ebe18308 195 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 12 192 2.1E-43 T 06-07-2017 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 CDO28_RS11540 1e350d7ba34a47f0d7897393ebe18308 195 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 8 191 21.084 T 06-07-2017 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 CDO28_RS11540 1e350d7ba34a47f0d7897393ebe18308 195 SUPERFAMILY SSF52374 8 191 1.38E-44 T 06-07-2017 CDO28_RS11540 1e350d7ba34a47f0d7897393ebe18308 195 Pfam PF01467 Cytidylyltransferase-like 12 191 8.3E-29 T 06-07-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDO28_RS33170 7bda2c788af3eb78f8bc6862ea2a49a7 428 Pfam PF01547 Bacterial extracellular solute-binding protein 50 332 3.0E-24 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS33170 7bda2c788af3eb78f8bc6862ea2a49a7 428 SUPERFAMILY SSF53850 32 423 1.97E-52 T 06-07-2017 CDO28_RS33170 7bda2c788af3eb78f8bc6862ea2a49a7 428 Gene3D G3DSA:3.40.190.10 320 353 2.0E-27 T 06-07-2017 CDO28_RS33170 7bda2c788af3eb78f8bc6862ea2a49a7 428 Gene3D G3DSA:3.40.190.10 30 145 2.0E-27 T 06-07-2017 CDO28_RS33170 7bda2c788af3eb78f8bc6862ea2a49a7 428 Gene3D G3DSA:3.40.190.10 147 319 5.8E-19 T 06-07-2017 CDO28_RS33510 191e19577f9a96882b2281f2e792ad11 423 Pfam PF13229 Right handed beta helix region 26 209 6.9E-10 T 06-07-2017 CDO28_RS33510 191e19577f9a96882b2281f2e792ad11 423 SUPERFAMILY SSF51126 2 215 6.81E-17 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 SMART SM00382 29 222 8.3E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 Pfam PF00005 ABC transporter 21 175 4.3E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 Gene3D G3DSA:3.40.50.300 3 244 4.1E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 245 3.4E-9 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDO28_RS30110 28d9af17830e75c88a976dd1d3459216 254 SUPERFAMILY SSF52540 4 246 1.63E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18565 826aeb28a64ebbf65c81aabbb3ded2e0 381 SUPERFAMILY SSF51395 18 358 1.83E-66 T 06-07-2017 CDO28_RS18565 826aeb28a64ebbf65c81aabbb3ded2e0 381 Pfam PF01207 Dihydrouridine synthase (Dus) 20 368 3.4E-64 T 06-07-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDO28_RS18565 826aeb28a64ebbf65c81aabbb3ded2e0 381 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 11 372 45.179 T 06-07-2017 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 CDO28_RS18565 826aeb28a64ebbf65c81aabbb3ded2e0 381 Gene3D G3DSA:3.20.20.70 18 273 1.5E-70 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18565 826aeb28a64ebbf65c81aabbb3ded2e0 381 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 99 117 - T 06-07-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Gene3D G3DSA:3.30.465.10 263 350 7.0E-23 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 SMART SM01091 268 351 8.3E-23 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 SUPERFAMILY SSF54631 89 153 2.93E-31 T 06-07-2017 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 SUPERFAMILY SSF54631 189 269 2.93E-31 T 06-07-2017 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Pfam PF00571 CBS domain 204 250 3.4E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Pfam PF00571 CBS domain 94 151 2.1E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Gene3D G3DSA:3.10.580.10 189 262 7.1E-18 T 06-07-2017 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Gene3D G3DSA:3.10.580.10 79 157 7.1E-18 T 06-07-2017 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 SUPERFAMILY SSF56176 269 354 1.69E-18 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS08500 ece9e000490973fad38dd239aed882c3 387 Pfam PF03471 Transporter associated domain 270 349 2.1E-18 T 06-07-2017 IPR005170 Transporter-associated domain CDO28_RS30075 d42e9f1fa33fcd756040952acd7c156e 328 PIRSF PIRSF017082 1 328 1.3E-81 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS30075 d42e9f1fa33fcd756040952acd7c156e 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 322 1.0E-23 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 Pfam PF00743 Flavin-binding monooxygenase-like 3 225 1.3E-29 T 06-07-2017 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 Pfam PF00743 Flavin-binding monooxygenase-like 244 377 2.6E-10 T 06-07-2017 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 Gene3D G3DSA:3.50.50.60 168 270 6.5E-22 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 154 170 1.6E-19 T 06-07-2017 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 257 284 1.6E-19 T 06-07-2017 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 2 18 1.6E-19 T 06-07-2017 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 322 335 1.6E-19 T 06-07-2017 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 Gene3D G3DSA:3.50.50.60 271 420 1.2E-57 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 Gene3D G3DSA:3.50.50.60 2 167 1.2E-57 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 SUPERFAMILY SSF51905 1 240 2.96E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10085 ba68debfb247f29c60b41d619a8c45b8 445 SUPERFAMILY SSF51905 252 384 7.77E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16855 6b843d87298a2a310524e6493f59bd9c 236 Pfam PF05988 Bacterial protein of unknown function (DUF899) 22 230 1.0E-64 T 06-07-2017 IPR010296 Protein of unknown function DUF899, thioredoxin-like CDO28_RS16855 6b843d87298a2a310524e6493f59bd9c 236 Gene3D G3DSA:3.40.30.10 71 188 5.0E-7 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16855 6b843d87298a2a310524e6493f59bd9c 236 SUPERFAMILY SSF52833 69 216 1.08E-11 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS26415 081ab07cad89cc021893bf881246ef34 330 Gene3D G3DSA:3.30.1490.20 114 186 8.1E-17 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS26415 081ab07cad89cc021893bf881246ef34 330 SUPERFAMILY SSF56059 109 301 3.54E-28 T 06-07-2017 CDO28_RS26415 081ab07cad89cc021893bf881246ef34 330 Gene3D G3DSA:3.30.470.20 191 301 1.3E-19 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS26415 081ab07cad89cc021893bf881246ef34 330 Pfam PF02655 ATP-grasp domain 111 270 2.9E-8 T 06-07-2017 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 CDO28_RS26415 081ab07cad89cc021893bf881246ef34 330 Gene3D G3DSA:3.40.50.20 1 113 6.9E-30 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS11420 56968b94d2d0511d651fb3d2cce0cf28 62 Gene3D G3DSA:2.20.25.10 15 61 8.4E-24 T 06-07-2017 CDO28_RS11420 56968b94d2d0511d651fb3d2cce0cf28 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 8 61 27.043 T 06-07-2017 IPR005651 Uncharacterised protein family UPF0434/Trm112 CDO28_RS11420 56968b94d2d0511d651fb3d2cce0cf28 62 SUPERFAMILY SSF158997 8 61 7.98E-20 T 06-07-2017 CDO28_RS11420 56968b94d2d0511d651fb3d2cce0cf28 62 Pfam PF03966 Trm112p-like protein 9 48 1.5E-9 T 06-07-2017 IPR005651 Uncharacterised protein family UPF0434/Trm112 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 154 173 1.4E-7 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 344 363 1.4E-7 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 396 422 1.4E-7 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 256 280 1.4E-7 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 184 208 1.4E-7 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05560 164935ff578f95f4d4b57a73e09e9415 521 Pfam PF00361 Proton-conducting membrane transporter 150 438 1.1E-45 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05790 fbf1d699539bd70ea8883def4f2cb03f 182 Pfam PF03729 Short repeat of unknown function (DUF308) 78 146 1.7E-8 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane CDO28_RS05790 fbf1d699539bd70ea8883def4f2cb03f 182 Pfam PF03729 Short repeat of unknown function (DUF308) 23 91 6.1E-10 T 06-07-2017 IPR005325 Protein of unknown function DUF308, membrane CDO28_RS05170 a447c922a34640f1178d80fb445169cb 50 Pfam PF12086 Protein of unknown function (DUF3563) 15 44 8.5E-9 T 06-07-2017 IPR021946 Protein of unknown function DUF3563 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 Pfam PF02881 SRP54-type protein, helical bundle domain 260 318 1.7E-9 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 SMART SM00382 342 522 1.4E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 SMART SM00962 343 544 2.5E-109 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 517 530 - T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 Pfam PF00448 SRP54-type protein, GTPase domain 343 542 6.6E-72 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 272 542 4.8E-96 T 06-07-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 SMART SM00963 249 328 3.8E-15 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 Gene3D G3DSA:1.20.120.140 274 353 9.0E-22 T 06-07-2017 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 SUPERFAMILY SSF47364 244 318 1.2E-19 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 SUPERFAMILY SSF52540 341 543 1.94E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 272 544 60.217 T 06-07-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CDO28_RS11150 1b18e23444376d2a8340ca1530de5a42 548 Gene3D G3DSA:3.40.50.300 354 544 9.4E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30765 6f8f2243e3c8cab52abcf12cd8374639 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 419 5.8E-145 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS30765 6f8f2243e3c8cab52abcf12cd8374639 426 PIRSF PIRSF006066 1 426 1.6E-138 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS30765 6f8f2243e3c8cab52abcf12cd8374639 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 2.3E-117 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 SUPERFAMILY SSF75620 13 352 1.31E-127 T 06-07-2017 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 Pfam PF00472 RF-1 domain 212 320 4.6E-41 T 06-07-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 356 39.562 T 06-07-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 7 354 9.3E-152 T 06-07-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 Pfam PF03462 PCRF domain 13 204 1.9E-68 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 Gene3D G3DSA:3.30.160.20 211 287 5.0E-34 T 06-07-2017 IPR014720 Double-stranded RNA-binding domain CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 SMART SM00937 64 179 2.1E-62 T 06-07-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 CDO28_RS14080 12fa87dcc4f6a500dce68830a8e1368d 360 Gene3D G3DSA:1.20.58.410 9 94 1.5E-8 T 06-07-2017 CDO28_RS27200 5626ff77eed9320a7494bf32c82423ad 194 Gene3D G3DSA:1.10.10.10 40 181 1.4E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27200 5626ff77eed9320a7494bf32c82423ad 194 Pfam PF12802 MarR family 79 135 8.1E-9 T 06-07-2017 CDO28_RS27200 5626ff77eed9320a7494bf32c82423ad 194 SMART SM00347 72 171 6.0E-22 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS27200 5626ff77eed9320a7494bf32c82423ad 194 ProSitePatterns PS01117 MarR-type HTH domain signature. 110 144 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS27200 5626ff77eed9320a7494bf32c82423ad 194 SUPERFAMILY SSF46785 40 180 9.26E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31820 345aace516739b557035e671206083bb 367 Gene3D G3DSA:3.30.360.10 192 301 2.8E-45 T 06-07-2017 CDO28_RS31820 345aace516739b557035e671206083bb 367 Gene3D G3DSA:3.40.50.720 3 191 1.2E-107 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31820 345aace516739b557035e671206083bb 367 Gene3D G3DSA:3.40.50.720 302 355 1.2E-107 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31820 345aace516739b557035e671206083bb 367 SUPERFAMILY SSF51735 5 187 2.52E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31820 345aace516739b557035e671206083bb 367 SUPERFAMILY SSF51735 298 357 2.52E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31820 345aace516739b557035e671206083bb 367 PIRSF PIRSF015578 1 365 1.9E-84 T 06-07-2017 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 CDO28_RS31820 345aace516739b557035e671206083bb 367 SUPERFAMILY SSF55347 192 300 9.29E-35 T 06-07-2017 CDO28_RS31820 345aace516739b557035e671206083bb 367 Pfam PF01658 Myo-inositol-1-phosphate synthase 193 301 3.6E-30 T 06-07-2017 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 SUPERFAMILY SSF52540 5 142 3.01E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 SUPERFAMILY SSF57716 144 191 3.85E-15 T 06-07-2017 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 Gene3D G3DSA:3.30.60.20 144 192 6.5E-17 T 06-07-2017 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 PIRSF PIRSF035805 1 195 1.6E-53 T 06-07-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 Gene3D G3DSA:3.40.50.300 14 110 3.0E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 175 188 - T 06-07-2017 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 Pfam PF00265 Thymidine kinase 6 188 7.1E-49 T 06-07-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 CDO28_RS15220 30680ec091d6c6e47950d522ad1f5915 195 Hamap MF_00124 Thymidine kinase [tdk]. 1 191 33.951 T 06-07-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 3 409 4.9E-214 T 06-07-2017 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 SUPERFAMILY SSF51905 32 255 1.19E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 SUPERFAMILY SSF51905 345 406 1.19E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Gene3D G3DSA:3.50.50.60 23 111 2.4E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Gene3D G3DSA:3.50.50.60 175 254 2.4E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Gene3D G3DSA:3.50.50.60 345 403 2.4E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Gene3D G3DSA:3.30.9.10 255 344 2.2E-12 T 06-07-2017 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Gene3D G3DSA:3.30.9.10 117 174 2.2E-12 T 06-07-2017 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 SUPERFAMILY SSF54373 263 340 8.11E-6 T 06-07-2017 CDO28_RS12840 ea5e9987fc492bf2861029b5ceecb23b 417 Pfam PF01266 FAD dependent oxidoreductase 34 383 1.2E-57 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS34245 bd25148a75cbd12515cbcd7ab424b83a 178 Gene3D G3DSA:2.40.50.90 65 159 3.2E-5 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34245 bd25148a75cbd12515cbcd7ab424b83a 178 SUPERFAMILY SSF50199 35 160 1.03E-10 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS20275 16cd214512b0fdbf42610fec96bd8863 124 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 3 110 6.9E-7 T 06-07-2017 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system CDO28_RS27235 1babb4226d24b082610517cfaaee458b 293 SUPERFAMILY SSF53448 1 285 1.96E-89 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27235 1babb4226d24b082610517cfaaee458b 293 Pfam PF00483 Nucleotidyl transferase 2 238 1.2E-67 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS27235 1babb4226d24b082610517cfaaee458b 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 285 7.2E-137 T 06-07-2017 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 CDO28_RS27235 1babb4226d24b082610517cfaaee458b 293 Gene3D G3DSA:3.90.550.10 1 266 8.4E-65 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PIRSF PIRSF000166 1 303 1.5E-105 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 Pfam PF01218 Coproporphyrinogen III oxidase 22 302 4.5E-85 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 Gene3D G3DSA:3.40.1500.10 13 302 1.7E-106 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 15 303 54.724 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 71 92 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 288 303 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 184 213 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 260 287 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 53 69 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 PRINTS PR00073 Coprogen oxidase signature 113 137 1.9E-53 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 SUPERFAMILY SSF102886 13 303 3.4E-110 T 06-07-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS00125 e23a181305edf2315232ffebb8eabb4b 303 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 188 212 - T 06-07-2017 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS18610 b292ea888acd52dd319298be4c181b41 129 Gene3D G3DSA:3.10.129.10 6 127 2.4E-37 T 06-07-2017 IPR029069 HotDog domain CDO28_RS18610 b292ea888acd52dd319298be4c181b41 129 Pfam PF03061 Thioesterase superfamily 26 96 1.9E-14 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 CDO28_RS18610 b292ea888acd52dd319298be4c181b41 129 SUPERFAMILY SSF54637 7 127 7.33E-35 T 06-07-2017 IPR029069 HotDog domain CDO28_RS14265 007f43947905502abade8a712c6b41d7 271 SUPERFAMILY SSF53187 14 263 3.14E-69 T 06-07-2017 CDO28_RS14265 007f43947905502abade8a712c6b41d7 271 Pfam PF05013 N-formylglutamate amidohydrolase 32 240 3.1E-41 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS14265 007f43947905502abade8a712c6b41d7 271 Gene3D G3DSA:3.40.630.40 21 262 8.2E-74 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS14265 007f43947905502abade8a712c6b41d7 271 PIRSF PIRSF029730 8 269 1.1E-102 T 06-07-2017 IPR011227 Uncharacterised conserved protein UCP029730 CDO28_RS20185 3b56fb996cfe0dbc5b7e6a62fc8481d5 307 Gene3D G3DSA:1.10.443.10 102 295 3.1E-32 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20185 3b56fb996cfe0dbc5b7e6a62fc8481d5 307 Pfam PF00589 Phage integrase family 106 288 1.1E-18 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20185 3b56fb996cfe0dbc5b7e6a62fc8481d5 307 SUPERFAMILY SSF56349 23 292 2.65E-34 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS32110 551cec75150216283703c7145df304eb 227 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 28 218 1.6E-52 T 06-07-2017 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 CDO28_RS32110 551cec75150216283703c7145df304eb 227 SUPERFAMILY SSF101473 12 219 9.68E-53 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32110 551cec75150216283703c7145df304eb 227 Pfam PF02734 DAK2 domain 47 218 1.5E-52 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32110 551cec75150216283703c7145df304eb 227 SMART SM01120 47 220 9.0E-67 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 Gene3D G3DSA:3.40.640.10 17 289 3.0E-76 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 PIRSF PIRSF001434 5 427 3.1E-118 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 233 247 - T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 SUPERFAMILY SSF53383 65 424 1.28E-89 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 Gene3D G3DSA:3.90.1150.10 290 425 8.8E-42 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS15860 6c3643d4540a5c540d21458719efd47e 427 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 19 424 1.3E-101 T 06-07-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Gene3D G3DSA:3.30.1490.100 255 360 1.7E-28 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Hamap MF_01113 DNA polymerase IV [dinB]. 16 367 39.286 T 06-07-2017 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Pfam PF11799 impB/mucB/samB family C-terminal domain 249 358 9.3E-16 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 SUPERFAMILY SSF56672 14 248 2.94E-94 T 06-07-2017 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Gene3D G3DSA:3.30.70.270 80 178 1.1E-34 T 06-07-2017 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Gene3D G3DSA:1.10.150.20 180 249 2.7E-24 T 06-07-2017 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Pfam PF00817 impB/mucB/samB family 22 168 5.6E-52 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 Pfam PF11798 IMS family HHH motif 181 211 3.5E-6 T 06-07-2017 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CDO28_RS20560 c8ae60c5a9982a461ae4e35279e5a90a 369 SUPERFAMILY SSF100879 252 352 3.34E-25 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 Pfam PF00216 Bacterial DNA-binding protein 6 94 3.8E-26 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 5 96 2.5E-41 T 06-07-2017 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 SMART SM00411 6 95 1.7E-28 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 Gene3D G3DSA:4.10.520.10 5 96 2.2E-29 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 4 100 28.314 T 06-07-2017 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 51 70 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 PRINTS PR01727 Prokaryotic integration host factor signature 45 60 3.3E-12 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 3.3E-12 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 3.3E-12 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04370 217f8697fbd016e6f03a373316d24645 112 SUPERFAMILY SSF47729 6 94 6.77E-27 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS25715 49c8a46874cd981d482a33ab3234a9b5 330 PIRSF PIRSF001439 1 329 2.4E-88 T 06-07-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CDO28_RS25715 49c8a46874cd981d482a33ab3234a9b5 330 Gene3D G3DSA:3.30.1780.10 1 141 1.5E-39 T 06-07-2017 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 CDO28_RS25715 49c8a46874cd981d482a33ab3234a9b5 330 Gene3D G3DSA:3.40.50.720 142 301 1.9E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25715 49c8a46874cd981d482a33ab3234a9b5 330 SUPERFAMILY SSF51735 1 329 2.57E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25715 49c8a46874cd981d482a33ab3234a9b5 330 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 319 1.6E-88 T 06-07-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CDO28_RS32265 76c1925f3def6130b63a1fb8aede8abc 407 SUPERFAMILY SSF103473 17 388 4.05E-29 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS32265 76c1925f3def6130b63a1fb8aede8abc 407 Gene3D G3DSA:1.20.1250.20 201 385 4.3E-16 T 06-07-2017 CDO28_RS32265 76c1925f3def6130b63a1fb8aede8abc 407 Gene3D G3DSA:1.20.1250.20 19 193 9.8E-8 T 06-07-2017 CDO28_RS32265 76c1925f3def6130b63a1fb8aede8abc 407 Pfam PF07690 Major Facilitator Superfamily 220 378 3.8E-12 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS29110 aa904cf2ea365f4488f4bc05c6e66f53 179 SUPERFAMILY SSF51182 23 125 1.39E-18 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS29110 aa904cf2ea365f4488f4bc05c6e66f53 179 PIRSF PIRSF019307 1 165 2.9E-72 T 06-07-2017 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type CDO28_RS29110 aa904cf2ea365f4488f4bc05c6e66f53 179 Pfam PF07883 Cupin domain 59 106 4.0E-7 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS29110 aa904cf2ea365f4488f4bc05c6e66f53 179 Gene3D G3DSA:2.60.120.10 11 125 6.2E-18 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS27440 f516d681bef7fc571a13f786696e3698 150 Pfam PF09990 Predicted membrane protein (DUF2231) 46 137 2.9E-11 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane CDO28_RS27440 f516d681bef7fc571a13f786696e3698 150 PIRSF PIRSF029509 1 150 6.2E-56 T 06-07-2017 IPR016923 Uncharacterised conserved protein UCP029509, membrane CDO28_RS00900 d20cb80ef196cc833d04a96710fc89ee 285 Gene3D G3DSA:3.30.1330.80 26 165 3.4E-18 T 06-07-2017 CDO28_RS00900 d20cb80ef196cc833d04a96710fc89ee 285 Gene3D G3DSA:3.30.1330.80 177 284 1.7E-12 T 06-07-2017 CDO28_RS00900 d20cb80ef196cc833d04a96710fc89ee 285 SUPERFAMILY SSF117856 20 163 1.86E-21 T 06-07-2017 CDO28_RS00900 d20cb80ef196cc833d04a96710fc89ee 285 SUPERFAMILY SSF117856 176 282 1.54E-17 T 06-07-2017 CDO28_RS00900 d20cb80ef196cc833d04a96710fc89ee 285 Pfam PF03479 Domain of unknown function (DUF296) 179 284 2.0E-7 T 06-07-2017 IPR005175 PPC domain CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 Gene3D G3DSA:2.40.10.240 65 150 1.8E-17 T 06-07-2017 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 Pfam PF02547 Queuosine biosynthesis protein 4 356 2.2E-122 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 SUPERFAMILY SSF111337 1 356 7.06E-127 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 357 43.036 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 Gene3D G3DSA:3.40.1780.10 194 356 9.5E-92 T 06-07-2017 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 Gene3D G3DSA:3.40.1780.10 1 63 9.5E-92 T 06-07-2017 CDO28_RS02250 dd48b2bd1f3ecd60f7748ed81b39af16 360 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 355 3.4E-109 T 06-07-2017 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDO28_RS24535 d47e3df585e00d6e0a508652eaabcf6a 437 Gene3D G3DSA:1.20.1250.20 21 202 2.3E-26 T 06-07-2017 CDO28_RS24535 d47e3df585e00d6e0a508652eaabcf6a 437 Gene3D G3DSA:1.20.1250.20 254 434 5.4E-20 T 06-07-2017 CDO28_RS24535 d47e3df585e00d6e0a508652eaabcf6a 437 Pfam PF07690 Major Facilitator Superfamily 31 395 3.5E-39 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS24535 d47e3df585e00d6e0a508652eaabcf6a 437 SUPERFAMILY SSF103473 7 436 7.85E-71 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS24535 d47e3df585e00d6e0a508652eaabcf6a 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 324 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS25925 bf7ba2c9b282592642fd55d6a163384d 149 Pfam PF13501 Sulfur oxidation protein SoxY 42 148 3.9E-25 T 06-07-2017 IPR032711 Ig-like SoxY domain CDO28_RS25925 bf7ba2c9b282592642fd55d6a163384d 149 PIRSF PIRSF010312 1 149 1.9E-31 T 06-07-2017 IPR016568 Sulphur oxidation, SoxY CDO28_RS24855 62515545c42c07594f2559313dd5635f 56 Pfam PF04964 Flp/Fap pilin component 8 53 3.4E-21 T 06-07-2017 IPR007047 Flp/Fap pilin component CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Gene3D G3DSA:3.30.160.110 117 151 1.5E-13 T 06-07-2017 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 SUPERFAMILY SSF53790 218 452 1.3E-72 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 299 332 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 8 209 1.8E-60 T 06-07-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 PIRSF PIRSF036426 5 469 6.6E-168 T 06-07-2017 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Gene3D G3DSA:3.30.950.10 335 454 9.1E-34 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 SUPERFAMILY SSF51735 6 116 2.5E-16 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 221 430 7.8E-50 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Pfam PF10414 Sirohaem synthase dimerisation region 154 211 1.2E-15 T 06-07-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Gene3D G3DSA:3.40.50.720 6 115 7.0E-25 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Gene3D G3DSA:3.40.1010.10 219 334 1.7E-43 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Pfam PF13241 Putative NAD(P)-binding 11 119 3.2E-17 T 06-07-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 224 238 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 Gene3D G3DSA:1.10.8.210 154 213 4.6E-16 T 06-07-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 SUPERFAMILY SSF75615 118 210 1.44E-22 T 06-07-2017 CDO28_RS03030 100be0af506f39ea0610b00bfb2c81f5 485 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 219 453 9.6E-88 T 06-07-2017 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 Gene3D G3DSA:3.30.1180.20 183 328 2.8E-45 T 06-07-2017 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 Pfam PF02733 Dak1 domain 18 324 2.3E-110 T 06-07-2017 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 SUPERFAMILY SSF101473 359 558 2.75E-47 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 SUPERFAMILY SSF82549 11 328 3.66E-106 T 06-07-2017 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 Gene3D G3DSA:3.40.50.10440 13 181 6.8E-61 T 06-07-2017 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 Pfam PF02734 DAK2 domain 389 560 1.9E-48 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS30055 f61e6d1b38830afb421412b0a1dfbd49 572 SMART SM01120 388 564 9.9E-55 T 06-07-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS20945 f826cfdf1e3bb0ae43799723f998dff1 345 Gene3D G3DSA:3.60.70.12 9 337 4.6E-105 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS20945 f826cfdf1e3bb0ae43799723f998dff1 345 SUPERFAMILY SSF56266 13 332 7.85E-91 T 06-07-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDO28_RS20945 f826cfdf1e3bb0ae43799723f998dff1 345 Pfam PF03576 Peptidase family S58 21 330 1.9E-98 T 06-07-2017 IPR005321 Peptidase S58, DmpA CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 265 285 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 Gene3D G3DSA:1.20.1090.10 191 380 2.9E-59 T 06-07-2017 CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 371 9.5E-114 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 179 207 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 SUPERFAMILY SSF56796 6 379 6.02E-124 T 06-07-2017 CDO28_RS16205 658acd3d1fc77a5b0f3bc21e48921b7b 381 Gene3D G3DSA:3.40.50.1970 6 190 1.4E-53 T 06-07-2017 CDO28_RS18225 8da768de9d02aba8276a57b423818f51 338 Gene3D G3DSA:3.20.20.140 38 337 3.6E-81 T 06-07-2017 CDO28_RS18225 8da768de9d02aba8276a57b423818f51 338 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 23 334 2.8E-89 T 06-07-2017 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 CDO28_RS18225 8da768de9d02aba8276a57b423818f51 338 SUPERFAMILY SSF51556 290 337 3.17E-65 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS18225 8da768de9d02aba8276a57b423818f51 338 SUPERFAMILY SSF51556 6 255 3.17E-65 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 27 172 2.4E-51 T 06-07-2017 CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 Gene3D G3DSA:3.40.30.10 93 173 1.6E-11 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 PIRSF PIRSF000216 1 229 7.5E-79 T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 130 148 - T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 173 3.4E-60 T 06-07-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04110 21fa1a033ac408f62bf59c24d2cc1a9f 275 SUPERFAMILY SSF52833 18 176 8.95E-50 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS10380 b92b8c587cfd7cf3c6d7ad8371e69715 258 Gene3D G3DSA:3.20.20.70 6 257 2.5E-105 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10380 b92b8c587cfd7cf3c6d7ad8371e69715 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 256 9.5E-108 T 06-07-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CDO28_RS10380 b92b8c587cfd7cf3c6d7ad8371e69715 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 256 47.269 T 06-07-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CDO28_RS10380 b92b8c587cfd7cf3c6d7ad8371e69715 258 Pfam PF00977 Histidine biosynthesis protein 6 239 1.6E-89 T 06-07-2017 IPR006062 Histidine biosynthesis GO:0000105 CDO28_RS10380 b92b8c587cfd7cf3c6d7ad8371e69715 258 SUPERFAMILY SSF51366 4 256 3.53E-82 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS34490 58ca82450e2a4ba67309fd1aa7b6ce59 295 SUPERFAMILY SSF141571 67 128 1.44E-30 T 06-07-2017 CDO28_RS34490 58ca82450e2a4ba67309fd1aa7b6ce59 295 SUPERFAMILY SSF141571 179 292 1.44E-30 T 06-07-2017 CDO28_RS34490 58ca82450e2a4ba67309fd1aa7b6ce59 295 Pfam PF13599 Pentapeptide repeats (9 copies) 85 130 2.0E-9 T 06-07-2017 IPR001646 Pentapeptide repeat CDO28_RS34490 58ca82450e2a4ba67309fd1aa7b6ce59 295 Pfam PF13599 Pentapeptide repeats (9 copies) 204 267 5.5E-10 T 06-07-2017 IPR001646 Pentapeptide repeat CDO28_RS11515 b6585ca74bd4484d6421ebabb4af511d 400 SUPERFAMILY SSF88713 177 394 4.67E-60 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS11515 b6585ca74bd4484d6421ebabb4af511d 400 Gene3D G3DSA:3.20.20.370 162 399 2.6E-70 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS11515 b6585ca74bd4484d6421ebabb4af511d 400 Pfam PF04748 Divergent polysaccharide deacetylase 180 394 1.2E-59 T 06-07-2017 IPR006837 Divergent polysaccharide deacetylase CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 Gene3D G3DSA:3.40.50.720 3 254 9.3E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 SUPERFAMILY SSF51735 3 219 2.32E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.6E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.6E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.6E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 194 9.8E-4 T 06-07-2017 CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.0E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 5.0E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.0E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.0E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 5.0E-18 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS32960 addecd6fa014dfaee67e6166cf462d43 300 Pfam PF00106 short chain dehydrogenase 4 197 2.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS25340 d61db5c5272d383711d6cae37becc79c 333 Gene3D G3DSA:3.40.50.1980 49 168 5.7E-21 T 06-07-2017 CDO28_RS25340 d61db5c5272d383711d6cae37becc79c 333 Pfam PF01497 Periplasmic binding protein 53 300 2.3E-25 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS25340 d61db5c5272d383711d6cae37becc79c 333 SUPERFAMILY SSF53807 31 318 7.06E-43 T 06-07-2017 CDO28_RS25340 d61db5c5272d383711d6cae37becc79c 333 Gene3D G3DSA:3.40.50.1980 169 326 4.5E-14 T 06-07-2017 CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 SUPERFAMILY SSF52540 271 487 1.99E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 Pfam PF00005 ABC transporter 274 427 2.6E-17 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 Pfam PF00005 ABC transporter 23 171 3.2E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 Gene3D G3DSA:3.40.50.300 2 232 4.2E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 SUPERFAMILY SSF52540 5 229 3.52E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 SMART SM00382 282 475 0.0031 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 SMART SM00382 31 219 2.0E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33020 c1a5187e73786824326b0de364d45ecc 513 Gene3D G3DSA:3.40.50.300 261 494 7.7E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23750 c2bfe04acfcb619da10a71ccefd37596 327 Gene3D G3DSA:3.20.20.100 1 313 7.3E-103 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS23750 c2bfe04acfcb619da10a71ccefd37596 327 SUPERFAMILY SSF51430 1 308 7.07E-95 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS23750 c2bfe04acfcb619da10a71ccefd37596 327 Pfam PF00248 Aldo/keto reductase family 15 307 5.6E-73 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS29960 286bfffda448a9fdca908b8dbd83809b 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 182 7.3E-28 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS29960 286bfffda448a9fdca908b8dbd83809b 224 Gene3D G3DSA:1.10.150.240 17 80 5.9E-4 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS29960 286bfffda448a9fdca908b8dbd83809b 224 SUPERFAMILY SSF56784 7 218 5.15E-52 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS29960 286bfffda448a9fdca908b8dbd83809b 224 Gene3D G3DSA:3.40.50.1000 81 220 8.1E-39 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS07940 baf64333d2b11c0f7d521d664e120878 268 SUPERFAMILY SSF50199 138 241 9.15E-10 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS14905 ddb6f9eda41b015793a9c4692a00421c 330 Pfam PF09084 NMT1/THI5 like 37 255 1.5E-41 T 06-07-2017 IPR015168 SsuA/THI5-like CDO28_RS14905 ddb6f9eda41b015793a9c4692a00421c 330 SUPERFAMILY SSF53850 25 256 4.3E-31 T 06-07-2017 CDO28_RS14905 ddb6f9eda41b015793a9c4692a00421c 330 Gene3D G3DSA:3.40.190.10 38 134 2.9E-4 T 06-07-2017 CDO28_RS08920 5704dc8e4d31b0eadb9b59791a98c334 268 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 16.676 T 06-07-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDO28_RS08920 5704dc8e4d31b0eadb9b59791a98c334 268 Pfam PF02673 Bacitracin resistance protein BacA 9 258 4.3E-69 T 06-07-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 Pfam PF10502 Signal peptidase, peptidase S26 177 217 1.2E-4 T 06-07-2017 IPR019533 Peptidase S26 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 ProSitePatterns PS00501 Signal peptidases I serine active site. 41 48 - T 06-07-2017 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 Pfam PF00717 Peptidase S24-like 38 126 8.7E-24 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 ProSitePatterns PS00760 Signal peptidases I lysine active site. 104 116 - T 06-07-2017 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 ProSitePatterns PS00761 Signal peptidases I signature 3. 185 198 - T 06-07-2017 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 Gene3D G3DSA:2.10.109.10 180 232 3.8E-50 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 Gene3D G3DSA:2.10.109.10 28 112 3.8E-50 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 16 221 1.1E-52 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 SUPERFAMILY SSF51306 30 245 6.02E-66 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 102 114 1.7E-24 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 32 48 1.7E-24 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDO28_RS05155 c9a560e5fe8a2e6f636ce58157d73ae2 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 180 199 1.7E-24 T 06-07-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDO28_RS09410 34269ad97f4dd3a660e77d1e0111e7d3 551 SUPERFAMILY SSF103473 24 417 3.92E-51 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS09410 34269ad97f4dd3a660e77d1e0111e7d3 551 Gene3D G3DSA:1.20.1250.20 240 407 1.8E-11 T 06-07-2017 CDO28_RS09410 34269ad97f4dd3a660e77d1e0111e7d3 551 Pfam PF05977 Transmembrane secretion effector 15 535 6.9E-245 T 06-07-2017 IPR010290 Transmembrane secretion effector CDO28_RS09410 34269ad97f4dd3a660e77d1e0111e7d3 551 Gene3D G3DSA:1.20.1250.20 25 210 2.4E-21 T 06-07-2017 CDO28_RS02805 e4dfc36bf4faeca160f0dc9aacd1d585 141 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 4.4E-56 T 06-07-2017 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 CDO28_RS02805 e4dfc36bf4faeca160f0dc9aacd1d585 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 7.7E-25 T 06-07-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 CDO28_RS32115 c729816835b557fa90345083df3ae4e0 330 Pfam PF02733 Dak1 domain 17 326 7.1E-108 T 06-07-2017 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32115 c729816835b557fa90345083df3ae4e0 330 Gene3D G3DSA:3.30.1180.20 185 328 1.0E-46 T 06-07-2017 CDO28_RS32115 c729816835b557fa90345083df3ae4e0 330 Gene3D G3DSA:3.40.50.10440 11 184 5.9E-59 T 06-07-2017 CDO28_RS32115 c729816835b557fa90345083df3ae4e0 330 SUPERFAMILY SSF82549 11 328 1.73E-106 T 06-07-2017 CDO28_RS07770 df1aca0882d7b8a683bb22f4d36e110e 274 Gene3D G3DSA:1.10.3720.10 54 269 7.0E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07770 df1aca0882d7b8a683bb22f4d36e110e 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 4.4E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07770 df1aca0882d7b8a683bb22f4d36e110e 274 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 54 164 1.1E-12 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS07770 df1aca0882d7b8a683bb22f4d36e110e 274 SUPERFAMILY SSF161098 55 255 1.05E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19175 1ae4f76015ff14451edc67fd133bf1a1 296 Pfam PF13460 NAD(P)H-binding 6 188 5.0E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19175 1ae4f76015ff14451edc67fd133bf1a1 296 SUPERFAMILY SSF51735 3 259 2.91E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19175 1ae4f76015ff14451edc67fd133bf1a1 296 Gene3D G3DSA:3.40.50.720 2 222 8.8E-27 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16575 147c8993ae05e71b9399cfed3ec0cce8 273 Gene3D G3DSA:3.50.30.50 49 273 4.3E-58 T 06-07-2017 CDO28_RS16575 147c8993ae05e71b9399cfed3ec0cce8 273 SUPERFAMILY SSF102198 49 273 9.42E-54 T 06-07-2017 CDO28_RS16575 147c8993ae05e71b9399cfed3ec0cce8 273 Pfam PF04199 Putative cyclase 52 216 1.1E-32 T 06-07-2017 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 CDO28_RS27920 2f5e621ebcd127ba7a778f9c22610bc2 410 SUPERFAMILY SSF53850 24 409 8.28E-91 T 06-07-2017 CDO28_RS27920 2f5e621ebcd127ba7a778f9c22610bc2 410 Gene3D G3DSA:3.40.190.10 312 365 9.1E-23 T 06-07-2017 CDO28_RS27920 2f5e621ebcd127ba7a778f9c22610bc2 410 Gene3D G3DSA:3.40.190.10 5 138 9.1E-23 T 06-07-2017 CDO28_RS27920 2f5e621ebcd127ba7a778f9c22610bc2 410 Gene3D G3DSA:3.40.190.10 143 311 3.8E-43 T 06-07-2017 CDO28_RS27920 2f5e621ebcd127ba7a778f9c22610bc2 410 Pfam PF01547 Bacterial extracellular solute-binding protein 45 324 8.9E-44 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 SUPERFAMILY SSF54506 10 136 2.3E-32 T 06-07-2017 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 Gene3D G3DSA:3.10.310.10 7 124 7.3E-34 T 06-07-2017 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 SUPERFAMILY SSF54506 150 284 5.93E-45 T 06-07-2017 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 Pfam PF01678 Diaminopimelate epimerase 12 129 1.7E-18 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 Pfam PF01678 Diaminopimelate epimerase 164 278 3.5E-22 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 Gene3D G3DSA:3.10.310.10 125 274 6.5E-47 T 06-07-2017 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 10 286 32.362 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 11 281 3.5E-62 T 06-07-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDO28_RS11140 ed5bf96775e52dd5f0c33a9f7c993f30 306 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 72 86 - T 06-07-2017 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 Hamap MF_00455 Xylose isomerase [xylA]. 12 436 53.271 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 SUPERFAMILY SSF51658 5 436 3.26E-169 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 5 436 1.7E-210 T 06-07-2017 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 Gene3D G3DSA:3.20.20.150 5 436 2.8E-202 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 91 113 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 179 200 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 206 225 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 132 152 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 270 297 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 155 174 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 332 343 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 228 252 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS12635 83f20980e17dd63a78820b211ac95e5c 436 PRINTS PR00688 Xylose isomerase signature 299 310 9.4E-79 T 06-07-2017 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CDO28_RS16030 54e77ae97404c175fb6cf9a2ac0f02be 288 SUPERFAMILY SSF161098 8 277 3.27E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16030 54e77ae97404c175fb6cf9a2ac0f02be 288 Gene3D G3DSA:1.10.3720.10 6 273 4.4E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16030 54e77ae97404c175fb6cf9a2ac0f02be 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 273 6.3E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 Gene3D G3DSA:3.40.50.620 241 250 1.3E-61 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 Gene3D G3DSA:3.40.50.620 4 207 1.3E-61 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 1 299 58.793 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 26 254 2.2E-66 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 SUPERFAMILY SSF52402 2 207 1.21E-72 T 06-07-2017 CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 6 299 9.4E-158 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS26395 c8daa6e123dd652993b3d4fd866e3a5f 299 PIRSF PIRSF002936 1 299 4.1E-151 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS09850 625d34809f92178ec1358a7d8f75855b 269 SUPERFAMILY SSF48452 59 238 1.64E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS09850 625d34809f92178ec1358a7d8f75855b 269 PIRSF PIRSF035836 2 269 7.9E-131 T 06-07-2017 IPR014596 Uncharacterised conserved protein UCP035836 CDO28_RS09850 625d34809f92178ec1358a7d8f75855b 269 Pfam PF14559 Tetratricopeptide repeat 58 110 5.3E-7 T 06-07-2017 CDO28_RS09850 625d34809f92178ec1358a7d8f75855b 269 Pfam PF13432 Tetratricopeptide repeat 151 210 5.8E-4 T 06-07-2017 CDO28_RS09850 625d34809f92178ec1358a7d8f75855b 269 Gene3D G3DSA:1.25.40.10 54 259 8.3E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS08835 4cad942f81fcef2635dfd49230014344 160 Pfam PF00692 dUTPase 27 158 6.4E-29 T 06-07-2017 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 CDO28_RS08835 4cad942f81fcef2635dfd49230014344 160 TIGRFAM TIGR00576 dut: dUTP diphosphatase 19 158 9.3E-52 T 06-07-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 CDO28_RS08835 4cad942f81fcef2635dfd49230014344 160 Gene3D G3DSA:2.70.40.10 16 159 1.0E-54 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS08835 4cad942f81fcef2635dfd49230014344 160 SUPERFAMILY SSF51283 13 159 1.83E-51 T 06-07-2017 IPR029054 dUTPase-like CDO28_RS08835 4cad942f81fcef2635dfd49230014344 160 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 12 159 33.527 T 06-07-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 Pfam PF01614 Bacterial transcriptional regulator 140 255 2.5E-9 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 SUPERFAMILY SSF46785 13 83 2.15E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 SUPERFAMILY SSF55781 77 257 2.29E-38 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 Pfam PF09339 IclR helix-turn-helix domain 14 65 3.5E-14 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 Gene3D G3DSA:1.10.10.10 7 79 1.2E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 Gene3D G3DSA:3.30.450.40 80 251 1.8E-34 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS00880 17fb20dfb1c106e69335c17cd8bd9f69 282 SMART SM00346 12 102 2.3E-14 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 189 1.7E-30 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 6 215 8.2E-51 T 06-07-2017 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 SUPERFAMILY SSF56784 5 215 2.17E-54 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 Gene3D G3DSA:3.40.50.1000 84 214 1.7E-36 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 Gene3D G3DSA:3.40.50.1000 4 19 1.7E-36 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 92 182 3.3E-7 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS18815 fc5408f22d97657460ef4dc180c62453 227 Gene3D G3DSA:1.10.150.240 20 82 2.4E-11 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS08510 6a955eefd320156bc614b759fab18ea8 351 Pfam PF02562 PhoH-like protein 134 337 4.2E-91 T 06-07-2017 IPR003714 PhoH-like protein GO:0005524 CDO28_RS08510 6a955eefd320156bc614b759fab18ea8 351 SUPERFAMILY SSF52540 133 314 8.16E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08510 6a955eefd320156bc614b759fab18ea8 351 Gene3D G3DSA:3.40.50.300 132 336 2.1E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31995 7ceaea680ef3ae86a56a03506a0f351d 327 Gene3D G3DSA:1.10.3720.10 51 319 7.0E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31995 7ceaea680ef3ae86a56a03506a0f351d 327 SUPERFAMILY SSF161098 44 321 1.44E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31995 7ceaea680ef3ae86a56a03506a0f351d 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 169 319 1.9E-6 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 159 178 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 139 153 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 245 264 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 28 44 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 114 130 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 290 316 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 44 65 3.7E-24 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 SUPERFAMILY SSF53850 23 340 1.68E-64 T 06-07-2017 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 Gene3D G3DSA:3.40.190.10 268 312 2.1E-29 T 06-07-2017 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 Gene3D G3DSA:3.40.190.10 21 123 2.1E-29 T 06-07-2017 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 Gene3D G3DSA:3.40.190.10 125 267 8.6E-9 T 06-07-2017 CDO28_RS06285 fa1324be5734431cad345b964aab6d7c 346 Pfam PF13416 Bacterial extracellular solute-binding protein 38 311 2.2E-27 T 06-07-2017 CDO28_RS14475 f9092665787f2543590d41795911c737 272 Gene3D G3DSA:1.10.3720.10 59 267 2.4E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14475 f9092665787f2543590d41795911c737 272 SUPERFAMILY SSF161098 63 256 7.33E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14475 f9092665787f2543590d41795911c737 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 269 3.4E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04075 6aa7fd781812dcfd79011d97bce430c9 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 102 20.226 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS04075 6aa7fd781812dcfd79011d97bce430c9 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 97 1.2E-24 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS20825 cede6c9ea413c5686fde1cdfce9660cd 68 Pfam PF00171 Aldehyde dehydrogenase family 10 65 1.2E-16 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS20825 cede6c9ea413c5686fde1cdfce9660cd 68 Gene3D G3DSA:3.40.309.10 8 67 4.4E-17 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS20825 cede6c9ea413c5686fde1cdfce9660cd 68 SUPERFAMILY SSF53720 10 67 6.94E-16 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS04295 0dd9f3273a37078563572269bc86bcb5 246 Gene3D G3DSA:3.60.21.10 1 244 6.4E-50 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS04295 0dd9f3273a37078563572269bc86bcb5 246 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 203 4.5E-28 T 06-07-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CDO28_RS04295 0dd9f3273a37078563572269bc86bcb5 246 SUPERFAMILY SSF56300 1 237 3.31E-49 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS04295 0dd9f3273a37078563572269bc86bcb5 246 PIRSF PIRSF000883 1 246 1.2E-55 T 06-07-2017 IPR011152 Phosphoesterase MJ0912 CDO28_RS15525 40e0cc965ce491d4bf1d2e43929392a2 113 SUPERFAMILY SSF50249 5 112 1.54E-31 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS15525 40e0cc965ce491d4bf1d2e43929392a2 113 Pfam PF01588 Putative tRNA binding domain 15 111 9.0E-14 T 06-07-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CDO28_RS15525 40e0cc965ce491d4bf1d2e43929392a2 113 Gene3D G3DSA:2.40.50.140 3 112 1.9E-35 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS15525 40e0cc965ce491d4bf1d2e43929392a2 113 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 7 112 2.9E-48 T 06-07-2017 IPR008231 Probable chaperone CsaA CDO28_RS20360 b767f143bc1d165136f204735139535d 568 Gene3D G3DSA:3.90.1310.10 126 182 5.6E-9 T 06-07-2017 CDO28_RS20360 b767f143bc1d165136f204735139535d 568 Gene3D G3DSA:3.40.710.10 206 534 1.3E-76 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20360 b767f143bc1d165136f204735139535d 568 SUPERFAMILY SSF56601 206 539 3.45E-78 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20360 b767f143bc1d165136f204735139535d 568 SUPERFAMILY SSF56519 59 182 7.06E-28 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDO28_RS20360 b767f143bc1d165136f204735139535d 568 Pfam PF03717 Penicillin-binding Protein dimerisation domain 58 166 1.2E-10 T 06-07-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDO28_RS20360 b767f143bc1d165136f204735139535d 568 Pfam PF00905 Penicillin binding protein transpeptidase domain 231 517 7.6E-57 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 73 138 9.5E-12 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 Gene3D G3DSA:1.10.3720.10 246 376 1.9E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 Gene3D G3DSA:1.10.3720.10 76 143 1.9E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 373 8.4E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 SUPERFAMILY SSF161098 174 363 4.32E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19790 271f3413f7c5994402dd5427bc84ef57 383 SUPERFAMILY SSF161098 76 156 1.57E-9 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 Gene3D G3DSA:1.10.238.10 131 187 1.3E-9 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 SUPERFAMILY SSF47473 126 186 5.7E-11 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 ProSitePatterns PS00018 EF-hand calcium-binding domain. 170 182 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 Pfam PF13202 EF hand 164 184 1.7E-5 T 06-07-2017 IPR002048 EF-hand domain GO:0005509 CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 Pfam PF13202 EF hand 141 160 0.017 T 06-07-2017 IPR002048 EF-hand domain GO:0005509 CDO28_RS28910 08e7caec0883374c7877933b1f2b7951 188 ProSitePatterns PS00018 EF-hand calcium-binding domain. 146 158 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Gene3D G3DSA:3.90.1200.10 121 317 1.8E-20 T 06-07-2017 CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 784 822 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Gene3D G3DSA:3.90.1150.10 552 604 1.2E-31 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Gene3D G3DSA:3.90.1150.10 870 973 1.2E-31 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 SUPERFAMILY SSF56112 15 317 9.69E-48 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Pfam PF01636 Phosphotransferase enzyme family 36 262 6.5E-27 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Pfam PF00202 Aminotransferase class-III 573 971 9.2E-73 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 SUPERFAMILY SSF53383 563 973 2.35E-105 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS13645 4ff169829ebe29f085001b894b3d246d 975 Gene3D G3DSA:3.40.640.10 605 867 1.1E-65 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22285 c549e305a75f16f173b61cdf8b5a03e9 279 SUPERFAMILY SSF53383 2 222 4.19E-37 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS22285 c549e305a75f16f173b61cdf8b5a03e9 279 Gene3D G3DSA:3.40.640.10 2 128 3.4E-28 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22285 c549e305a75f16f173b61cdf8b5a03e9 279 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 2 209 4.5E-38 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS00235 bc277d86bf20e26ecbc8d87b6bf652dc 499 PIRSF PIRSF019381 5 499 1.1E-167 T 06-07-2017 IPR007413 Protein of unknown function DUF463, YcjX-like protein CDO28_RS00235 bc277d86bf20e26ecbc8d87b6bf652dc 499 Pfam PF04317 YcjX-like family, DUF463 31 498 1.4E-173 T 06-07-2017 IPR007413 Protein of unknown function DUF463, YcjX-like protein CDO28_RS06750 99e92f0d6469be7a2170bbad945bdef3 131 Gene3D G3DSA:1.10.260.40 45 118 1.0E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS06750 99e92f0d6469be7a2170bbad945bdef3 131 SUPERFAMILY SSF47413 60 118 4.22E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS15510 0c7ae68c269e2c16d6c9c8fea455ca6d 95 Pfam PF04380 Membrane fusogenic activity 6 79 3.1E-27 T 06-07-2017 IPR007475 Membrane fusogenic activity CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 Gene3D G3DSA:3.90.1200.10 261 493 9.7E-60 T 06-07-2017 CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 SUPERFAMILY SSF56112 165 490 5.54E-44 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 SUPERFAMILY SSF52540 1 140 1.06E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 Gene3D G3DSA:3.40.50.300 4 148 2.2E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 Gene3D G3DSA:3.30.200.20 149 254 1.2E-25 T 06-07-2017 CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 139 2.1E-34 T 06-07-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 134 5.4E-35 T 06-07-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 PIRSF PIRSF036599 1 504 4.0E-269 T 06-07-2017 IPR012180 Predicted bifunctional ATPase/phosphotransferase CDO28_RS10455 c1e0403ccaae0fd50182040de25d98ab 504 Pfam PF01636 Phosphotransferase enzyme family 169 425 7.9E-22 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS14720 f7dbf6eb8e9868affb2a1b9724dcea73 317 Gene3D G3DSA:3.10.180.10 139 316 5.8E-48 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14720 f7dbf6eb8e9868affb2a1b9724dcea73 317 Gene3D G3DSA:3.10.180.10 2 132 8.9E-35 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14720 f7dbf6eb8e9868affb2a1b9724dcea73 317 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 103 5.1E-10 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS14720 f7dbf6eb8e9868affb2a1b9724dcea73 317 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 276 3.5E-14 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS14720 f7dbf6eb8e9868affb2a1b9724dcea73 317 SUPERFAMILY SSF54593 4 305 1.74E-49 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS21660 8c55359b3177518d4cf506c500f184f2 102 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 58 5.7E-19 T 06-07-2017 IPR007337 RelB antitoxin/Antitoxin DinJ CDO28_RS21660 8c55359b3177518d4cf506c500f184f2 102 Pfam PF04221 RelB antitoxin 4 52 1.2E-16 T 06-07-2017 IPR007337 RelB antitoxin/Antitoxin DinJ CDO28_RS31395 4175c1424e61b5ca73e2730616946494 374 SUPERFAMILY SSF53850 42 338 4.51E-31 T 06-07-2017 CDO28_RS31395 4175c1424e61b5ca73e2730616946494 374 Pfam PF13531 Bacterial extracellular solute-binding protein 47 321 3.0E-34 T 06-07-2017 CDO28_RS31395 4175c1424e61b5ca73e2730616946494 374 Gene3D G3DSA:3.40.190.10 141 313 8.4E-40 T 06-07-2017 CDO28_RS29490 4baf114dc59897bbe0b8f99352d0d90d 490 Gene3D G3DSA:3.30.565.10 356 486 1.1E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29490 4baf114dc59897bbe0b8f99352d0d90d 490 Pfam PF07730 Histidine kinase 290 352 1.2E-5 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CDO28_RS29490 4baf114dc59897bbe0b8f99352d0d90d 490 SUPERFAMILY SSF55874 362 482 2.1E-13 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS29490 4baf114dc59897bbe0b8f99352d0d90d 490 SMART SM00387 394 486 9.3E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 SMART SM00267 327 507 1.4E-47 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 Pfam PF00990 Diguanylate cyclase, GGDEF domain 339 503 4.7E-39 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 Gene3D G3DSA:3.30.70.270 340 514 5.3E-47 T 06-07-2017 CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 Pfam PF00563 EAL domain 531 756 1.5E-59 T 06-07-2017 IPR001633 EAL domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 SUPERFAMILY SSF55073 343 507 1.65E-40 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 Gene3D G3DSA:3.20.20.450 521 766 1.4E-72 T 06-07-2017 IPR001633 EAL domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 SMART SM00052 516 761 5.1E-72 T 06-07-2017 IPR001633 EAL domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 SUPERFAMILY SSF141868 523 769 1.27E-69 T 06-07-2017 IPR001633 EAL domain CDO28_RS06290 6ef406e4fa7662d455b03a1d5e12faf0 790 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 335 504 2.2E-38 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS33315 7a78184163e949cd67e72fd0c89499e6 323 Gene3D G3DSA:3.40.50.2000 149 262 8.1E-8 T 06-07-2017 CDO28_RS33315 7a78184163e949cd67e72fd0c89499e6 323 Pfam PF06258 Mitochondrial fission ELM1 25 320 2.5E-71 T 06-07-2017 IPR009367 Mitochondrial fission protein ELM1-like CDO28_RS33315 7a78184163e949cd67e72fd0c89499e6 323 SUPERFAMILY SSF53756 65 267 9.07E-14 T 06-07-2017 CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 Gene3D G3DSA:3.40.190.10 95 182 3.3E-17 T 06-07-2017 CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 Gene3D G3DSA:3.40.190.10 183 248 2.0E-4 T 06-07-2017 CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 4.1E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 Gene3D G3DSA:1.10.10.10 6 88 1.3E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 Pfam PF03466 LysR substrate binding domain 93 289 2.5E-34 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 SUPERFAMILY SSF46785 4 115 1.89E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12205 2bdeb5373bf00c733db3ec15b7379259 315 SUPERFAMILY SSF53850 93 290 3.8E-38 T 06-07-2017 CDO28_RS22910 bb38b8745785fa3398af90353093b65e 266 Gene3D G3DSA:1.10.3720.10 13 264 7.2E-51 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22910 bb38b8745785fa3398af90353093b65e 266 SUPERFAMILY SSF161098 10 260 8.04E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22910 bb38b8745785fa3398af90353093b65e 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 265 6.6E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09360 12d70276af53d4c7fdefb1e966ab1c27 338 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 267 273 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS09360 12d70276af53d4c7fdefb1e966ab1c27 338 Pfam PF05175 Methyltransferase small domain 167 334 1.6E-52 T 06-07-2017 IPR007848 Methyltransferase small domain GO:0008168 CDO28_RS09360 12d70276af53d4c7fdefb1e966ab1c27 338 Gene3D G3DSA:3.40.50.150 167 327 1.2E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS09360 12d70276af53d4c7fdefb1e966ab1c27 338 SUPERFAMILY SSF53335 167 315 3.52E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 SUPERFAMILY SSF53223 9 110 6.33E-28 T 06-07-2017 CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 131 199 6.5E-11 T 06-07-2017 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 14 277 5.4E-68 T 06-07-2017 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 14 98 6.4E-26 T 06-07-2017 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 Gene3D G3DSA:3.40.192.10 10 115 9.7E-34 T 06-07-2017 CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 Gene3D G3DSA:3.40.50.720 116 275 3.4E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 9 280 31.918 T 06-07-2017 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDO28_RS10620 a818ae7f18df48c5b790daf164bfaaa6 286 SUPERFAMILY SSF51735 111 276 4.8E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 Pfam PF03466 LysR substrate binding domain 90 296 1.2E-38 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.0E-8 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 Gene3D G3DSA:3.40.190.10 164 264 1.1E-24 T 06-07-2017 CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 SUPERFAMILY SSF46785 5 89 3.73E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.1E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 Gene3D G3DSA:1.10.10.10 5 77 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24650 c390bc11a77c473849a7e43115f3eac3 307 SUPERFAMILY SSF53850 91 298 3.08E-43 T 06-07-2017 CDO28_RS14065 840e66fb3c0aa297de41c4b3d4449fe5 181 SUPERFAMILY SSF53597 2 178 2.09E-34 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS14065 840e66fb3c0aa297de41c4b3d4449fe5 181 Pfam PF01872 RibD C-terminal domain 2 172 2.7E-29 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS14065 840e66fb3c0aa297de41c4b3d4449fe5 181 Gene3D G3DSA:3.40.430.10 3 178 1.1E-32 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS00380 d18e633c0b3e15978a3f79d55aa43109 196 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 105 195 4.0E-20 T 06-07-2017 IPR018550 Lipid A 3-O-deacylase-related CDO28_RS00380 d18e633c0b3e15978a3f79d55aa43109 196 Gene3D G3DSA:2.40.160.20 85 196 5.5E-20 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS27050 8432059b94e2b47e1a85086b3da07474 376 Gene3D G3DSA:1.10.3720.10 177 373 2.3E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27050 8432059b94e2b47e1a85086b3da07474 376 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 193 374 1.2E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27050 8432059b94e2b47e1a85086b3da07474 376 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 62 4.9E-12 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS27050 8432059b94e2b47e1a85086b3da07474 376 SUPERFAMILY SSF161098 174 357 5.63E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31170 d7ca7b14b20daed72f9047bd6ab6f81b 241 Gene3D G3DSA:3.50.30.40 17 192 4.7E-42 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS31170 d7ca7b14b20daed72f9047bd6ab6f81b 241 Pfam PF03737 Demethylmenaquinone methyltransferase 20 184 9.2E-31 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS31170 d7ca7b14b20daed72f9047bd6ab6f81b 241 SUPERFAMILY SSF89562 16 195 3.27E-41 T 06-07-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDO28_RS21415 d0538b1c3167b2e255e241473b51f485 425 PIRSF PIRSF006066 1 425 1.0E-141 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS21415 d0538b1c3167b2e255e241473b51f485 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 5.3E-118 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS21415 d0538b1c3167b2e255e241473b51f485 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 418 1.2E-136 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 1.5E-25 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 SUPERFAMILY SSF55347 129 300 1.64E-37 T 06-07-2017 CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 Gene3D G3DSA:3.30.360.10 143 251 5.8E-39 T 06-07-2017 CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 Gene3D G3DSA:3.30.360.10 286 333 5.8E-39 T 06-07-2017 CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 Gene3D G3DSA:3.40.50.720 1 142 3.7E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22215 ba5efb9fc99666038a09cd10f1d8be4c 334 SUPERFAMILY SSF51735 4 154 2.03E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25185 b901b1dd0354198717fe65a642aebc30 151 SUPERFAMILY SSF46689 49 146 4.48E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25185 b901b1dd0354198717fe65a642aebc30 151 Pfam PF01527 Transposase 49 134 4.3E-9 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS25185 b901b1dd0354198717fe65a642aebc30 151 Gene3D G3DSA:1.10.10.60 61 146 6.7E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS26105 9b75bbe20e38b858f5d752194d1c8def 336 SMART SM00641 131 234 1.1E-22 T 06-07-2017 IPR018077 Glycoside hydrolase, family 25 subgroup CDO28_RS26105 9b75bbe20e38b858f5d752194d1c8def 336 Pfam PF01183 Glycosyl hydrolases family 25 134 311 7.8E-58 T 06-07-2017 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CDO28_RS26105 9b75bbe20e38b858f5d752194d1c8def 336 SUPERFAMILY SSF51445 129 332 7.72E-70 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS26105 9b75bbe20e38b858f5d752194d1c8def 336 Gene3D G3DSA:3.20.20.80 130 331 5.9E-69 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS21970 0c4116d7718f73b297668f04b083773b 430 Pfam PF13379 NMT1-like family 41 300 3.8E-101 T 06-07-2017 CDO28_RS21970 0c4116d7718f73b297668f04b083773b 430 SUPERFAMILY SSF53850 48 297 1.28E-25 T 06-07-2017 CDO28_RS21970 0c4116d7718f73b297668f04b083773b 430 Gene3D G3DSA:3.40.190.10 174 279 1.2E-11 T 06-07-2017 CDO28_RS19610 deb84684c9bb222c778d8a5459b61a66 340 Pfam PF11294 Protein of unknown function (DUF3095) 250 333 1.4E-30 T 06-07-2017 IPR021445 Protein of unknown function DUF3095 CDO28_RS19610 deb84684c9bb222c778d8a5459b61a66 340 Pfam PF11294 Protein of unknown function (DUF3095) 11 240 6.2E-75 T 06-07-2017 IPR021445 Protein of unknown function DUF3095 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 SUPERFAMILY SSF143456 14 201 2.35E-62 T 06-07-2017 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 Gene3D G3DSA:3.40.1740.10 7 52 3.2E-33 T 06-07-2017 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 Gene3D G3DSA:3.40.1740.10 145 191 3.2E-33 T 06-07-2017 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 Gene3D G3DSA:3.30.70.1300 53 144 9.2E-24 T 06-07-2017 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 13 201 36.197 T 06-07-2017 IPR003774 Protein of unknown function UPF0301 CDO28_RS05980 cbaf686d1cb6446a72f3a34db587bea5 201 Pfam PF02622 Uncharacterized ACR, COG1678 24 188 8.4E-47 T 06-07-2017 IPR003774 Protein of unknown function UPF0301 CDO28_RS09000 d6200e9f8245adaef7c6002d81f27d03 80 Gene3D G3DSA:3.40.1620.10 4 40 3.7E-13 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS09000 d6200e9f8245adaef7c6002d81f27d03 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 2 63 6.4E-14 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS09000 d6200e9f8245adaef7c6002d81f27d03 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 42 1.4E-13 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS09000 d6200e9f8245adaef7c6002d81f27d03 80 SUPERFAMILY SSF143120 2 46 9.55E-11 T 06-07-2017 CDO28_RS18480 9d92b45e1809e4c5b0a567cadea8d00d 354 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 113 323 1.0E-86 T 06-07-2017 IPR014142 P-type conjugative transfer protein TrbG CDO28_RS18480 9d92b45e1809e4c5b0a567cadea8d00d 354 Pfam PF03524 Conjugal transfer protein 112 335 8.1E-67 T 06-07-2017 IPR010258 Conjugal transfer, TrbG/VirB9/CagX CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 304 1.4E-28 T 06-07-2017 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 6.2E-38 T 06-07-2017 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 1.7E-27 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 1.7E-27 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 1.7E-27 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 1.7E-27 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 1.7E-27 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 SUPERFAMILY SSF56327 144 311 1.73E-55 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 309 6.9E-127 T 06-07-2017 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 Hamap MF_00487 Malate dehydrogenase [mdh]. 3 313 46.275 T 06-07-2017 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 Gene3D G3DSA:3.40.50.720 2 144 1.8E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 Gene3D G3DSA:3.90.110.10 145 313 1.3E-60 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 PIRSF PIRSF000102 1 314 6.5E-102 T 06-07-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDO28_RS11785 24fc0f8d518b02e054511222123bc44d 320 SUPERFAMILY SSF51735 5 144 1.23E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10585 6f302fd031c0e22a71fac466d7c5dd19 188 Pfam PF01713 Smr domain 98 180 2.1E-21 T 06-07-2017 IPR002625 Smr domain CDO28_RS10585 6f302fd031c0e22a71fac466d7c5dd19 188 SUPERFAMILY SSF160443 95 180 2.35E-15 T 06-07-2017 IPR002625 Smr domain CDO28_RS10585 6f302fd031c0e22a71fac466d7c5dd19 188 SMART SM00463 95 181 2.0E-8 T 06-07-2017 IPR002625 Smr domain CDO28_RS15960 06ac6be4eda8bfcf330f301d0099af28 264 SUPERFAMILY SSF47413 23 65 1.72E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS15960 06ac6be4eda8bfcf330f301d0099af28 264 SMART SM00530 10 64 3.4E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS15960 06ac6be4eda8bfcf330f301d0099af28 264 Pfam PF01381 Helix-turn-helix 20 64 1.7E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS15960 06ac6be4eda8bfcf330f301d0099af28 264 Gene3D G3DSA:1.10.260.40 8 64 1.8E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 Pfam PF01070 FMN-dependent dehydrogenase 13 371 2.2E-124 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 Gene3D G3DSA:3.20.20.70 3 371 1.5E-122 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 PIRSF PIRSF000138 1 379 1.2E-131 T 06-07-2017 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 06-07-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 SUPERFAMILY SSF51395 223 371 9.16E-95 T 06-07-2017 CDO28_RS19955 f08b593b38471f36bd2e40804b707d56 381 SUPERFAMILY SSF51395 3 194 9.16E-95 T 06-07-2017 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 Gene3D G3DSA:3.40.50.740 212 338 1.8E-31 T 06-07-2017 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 SUPERFAMILY SSF53706 2 463 2.42E-124 T 06-07-2017 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 Pfam PF01568 Molydopterin dinucleotide binding domain 472 579 3.4E-25 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 Gene3D G3DSA:3.40.228.10 3 195 1.5E-43 T 06-07-2017 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 1 585 0.0 T 06-07-2017 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 KEGG: 00910+1.7.99.4 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 Pfam PF00384 Molybdopterin oxidoreductase 12 325 1.4E-55 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 SUPERFAMILY SSF50692 441 582 3.62E-40 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS22535 5cdd4b096ee5baec945a5fd5f333fd2d 586 Gene3D G3DSA:2.40.40.20 425 582 6.4E-44 T 06-07-2017 CDO28_RS06480 6c5f45a32144d121199bf33d16e33a43 574 SUPERFAMILY SSF143975 3 372 3.92E-123 T 06-07-2017 CDO28_RS06480 6c5f45a32144d121199bf33d16e33a43 574 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 124 134 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS06480 6c5f45a32144d121199bf33d16e33a43 574 Pfam PF00920 Dehydratase family 41 556 1.4E-175 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS06480 6c5f45a32144d121199bf33d16e33a43 574 SUPERFAMILY SSF52016 376 561 5.57E-58 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS08085 084ef22dbd7bdaa2ec516e22450a2816 411 Pfam PF07690 Major Facilitator Superfamily 34 346 1.0E-35 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS08085 084ef22dbd7bdaa2ec516e22450a2816 411 Gene3D G3DSA:1.20.1250.20 33 211 8.9E-27 T 06-07-2017 CDO28_RS08085 084ef22dbd7bdaa2ec516e22450a2816 411 Gene3D G3DSA:1.20.1250.20 226 399 3.4E-14 T 06-07-2017 CDO28_RS08085 084ef22dbd7bdaa2ec516e22450a2816 411 SUPERFAMILY SSF103473 31 405 1.44E-55 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 Pfam PF00005 ABC transporter 20 166 1.0E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 Pfam PF00005 ABC transporter 267 420 3.0E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 ProSitePatterns PS00211 ABC transporters family signature. 393 407 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 SUPERFAMILY SSF52540 245 478 6.12E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 Gene3D G3DSA:3.40.50.300 3 222 5.6E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 SMART SM00382 275 477 0.021 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 SMART SM00382 29 214 5.7E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 Gene3D G3DSA:3.40.50.300 250 486 1.7E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14345 29eabcb6967d101814235e7ca3e14c99 501 SUPERFAMILY SSF52540 4 220 3.2E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05300 c2e8aab34aa6fe35b23f858334c7c388 106 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 1 106 24.511 T 06-07-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CDO28_RS05300 c2e8aab34aa6fe35b23f858334c7c388 106 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 6 106 1.2E-31 T 06-07-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CDO28_RS05300 c2e8aab34aa6fe35b23f858334c7c388 106 SUPERFAMILY SSF103481 7 104 6.28E-7 T 06-07-2017 CDO28_RS06795 a0560d27a49dcdb7ec19314968310a4c 326 SUPERFAMILY SSF56281 45 320 5.24E-43 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS06795 a0560d27a49dcdb7ec19314968310a4c 326 SMART SM00849 98 299 3.7E-13 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS06795 a0560d27a49dcdb7ec19314968310a4c 326 Pfam PF00753 Metallo-beta-lactamase superfamily 102 280 6.3E-18 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS06795 a0560d27a49dcdb7ec19314968310a4c 326 Gene3D G3DSA:3.60.15.10 44 323 2.0E-48 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 Pfam PF14759 Reductase C-terminal 318 406 7.0E-23 T 06-07-2017 IPR028202 Reductase, C-terminal CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 299 2.2E-70 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 SUPERFAMILY SSF51905 190 333 5.19E-45 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 SUPERFAMILY SSF51905 2 160 5.19E-45 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 Gene3D G3DSA:3.50.50.60 2 104 2.2E-30 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 SUPERFAMILY SSF55424 314 406 2.61E-20 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 408 6.5E-22 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 6.5E-22 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 6.5E-22 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 6.5E-22 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 6.5E-22 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 Gene3D G3DSA:3.50.50.60 105 308 9.6E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.2E-27 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 2.2E-27 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 2.2E-27 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.2E-27 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 2.2E-27 T 06-07-2017 CDO28_RS22250 042acd26f57586cb2dc81d6d18dd08a0 408 Gene3D G3DSA:3.30.390.30 318 406 3.8E-24 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 Gene3D G3DSA:3.40.50.1000 4 83 2.2E-27 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 Gene3D G3DSA:3.40.50.1000 191 259 2.2E-27 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 Pfam PF13344 Haloacid dehalogenase-like hydrolase 18 115 6.2E-16 T 06-07-2017 IPR006357 HAD-superfamily hydrolase, subfamily IIA CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 10 244 1.8E-47 T 06-07-2017 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 Gene3D G3DSA:3.40.50.10410 95 183 4.0E-6 T 06-07-2017 IPR023215 Nitrophenylphosphatase-like domain CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 18 246 7.2E-59 T 06-07-2017 IPR006357 HAD-superfamily hydrolase, subfamily IIA CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 SUPERFAMILY SSF56784 14 256 8.12E-46 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06615 11c53398f20bb311ba3f17c96a092f8a 282 Pfam PF13242 HAD-hyrolase-like 192 254 5.2E-8 T 06-07-2017 CDO28_RS07885 b24f9e6f7538c8e6621034dad32ba810 78 Gene3D G3DSA:3.30.70.920 5 76 1.0E-22 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS07885 b24f9e6f7538c8e6621034dad32ba810 78 Pfam PF01037 Lrp/AsnC ligand binding domain 6 75 9.2E-14 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS07885 b24f9e6f7538c8e6621034dad32ba810 78 SUPERFAMILY SSF54909 4 77 5.09E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS00250 002c42b422ad04e9fad85bb9d8881c82 321 Pfam PF04347 Flagellar biosynthesis protein, FliO 46 104 1.5E-8 T 06-07-2017 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 CDO28_RS28375 c72a4d8e94e88970ea11a181e18a5d13 334 SUPERFAMILY SSF88713 14 68 5.0E-30 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS28375 c72a4d8e94e88970ea11a181e18a5d13 334 SUPERFAMILY SSF88713 104 322 5.0E-30 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS28375 c72a4d8e94e88970ea11a181e18a5d13 334 Gene3D G3DSA:3.20.20.370 4 65 1.2E-17 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS28375 c72a4d8e94e88970ea11a181e18a5d13 334 Gene3D G3DSA:3.20.20.370 105 318 1.2E-17 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 SUPERFAMILY SSF53223 4 177 1.95E-57 T 06-07-2017 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 207 227 8.5E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 86 100 8.5E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 8.5E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 166 188 8.5E-31 T 06-07-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 SMART SM00839 177 408 9.7E-70 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 29 156 1.8E-47 T 06-07-2017 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 175 408 1.5E-61 T 06-07-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 SUPERFAMILY SSF51735 175 409 6.08E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 Gene3D G3DSA:3.40.50.720 175 409 1.9E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 Gene3D G3DSA:3.40.192.10 34 173 8.7E-48 T 06-07-2017 CDO28_RS22350 145b9571b68c48d99e46df9f443c3532 415 PIRSF PIRSF000185 1 411 1.9E-151 T 06-07-2017 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 Gene3D G3DSA:1.25.40.10 44 228 4.5E-28 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 Pfam PF08238 Sel1 repeat 161 196 5.8E-6 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 Pfam PF08238 Sel1 repeat 79 109 0.41 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 Pfam PF08238 Sel1 repeat 125 156 1.9 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 SUPERFAMILY SSF81901 43 236 1.92E-27 T 06-07-2017 CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 SMART SM00671 75 110 2.4E-4 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 SMART SM00671 43 74 160.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 SMART SM00671 161 196 1.9E-7 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS02775 a4dfb296cfc5ee2dad1c7251eda0a84f 268 SMART SM00671 121 159 14.0 T 06-07-2017 IPR006597 Sel1-like repeat CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 175 202 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 135 314 1.1E-57 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 64 343 4.1E-17 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 Gene3D G3DSA:3.40.50.720 61 132 1.3E-18 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 SUPERFAMILY SSF52283 61 161 6.24E-21 T 06-07-2017 CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 Gene3D G3DSA:3.40.50.720 133 315 4.8E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 SUPERFAMILY SSF51735 125 315 8.69E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16085 d551d34e2e1525ce721ba6bb6e745d92 345 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 253 269 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS26740 9a929a30832df74ecae5d6092213d074 159 Gene3D G3DSA:2.60.40.790 5 138 9.5E-16 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS26740 9a929a30832df74ecae5d6092213d074 159 Pfam PF00011 Hsp20/alpha crystallin family 43 138 1.6E-18 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain CDO28_RS26740 9a929a30832df74ecae5d6092213d074 159 SUPERFAMILY SSF49764 32 137 2.76E-19 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 PIRSF PIRSF029172 1 407 5.1E-162 T 06-07-2017 IPR027020 Protein ynjB CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 Gene3D G3DSA:3.40.190.10 325 363 3.4E-16 T 06-07-2017 CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 Gene3D G3DSA:3.40.190.10 38 161 3.4E-16 T 06-07-2017 CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 SUPERFAMILY SSF53850 39 404 7.91E-42 T 06-07-2017 CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 Pfam PF13416 Bacterial extracellular solute-binding protein 62 354 4.8E-27 T 06-07-2017 CDO28_RS10285 cb0dfb3da05ee3161bc40d415d30ede3 408 Gene3D G3DSA:3.40.190.10 163 324 5.0E-12 T 06-07-2017 CDO28_RS07590 1abe5991dd8d6a973048ff4efd161fab 87 Gene3D G3DSA:2.40.50.140 11 87 1.4E-39 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS07590 1abe5991dd8d6a973048ff4efd161fab 87 Pfam PF01176 Translation initiation factor 1A / IF-1 23 85 4.5E-27 T 06-07-2017 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 CDO28_RS07590 1abe5991dd8d6a973048ff4efd161fab 87 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 18 85 2.7E-32 T 06-07-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CDO28_RS07590 1abe5991dd8d6a973048ff4efd161fab 87 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 16 87 26.265 T 06-07-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CDO28_RS07590 1abe5991dd8d6a973048ff4efd161fab 87 SUPERFAMILY SSF50249 16 86 1.22E-26 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 TIGRFAM TIGR01686 FkbH: FkbH domain 271 597 8.9E-87 T 06-07-2017 IPR010037 FkbH domain CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 SUPERFAMILY SSF56784 270 389 2.33E-8 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 SUPERFAMILY SSF55729 462 600 6.12E-6 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 Gene3D G3DSA:3.40.630.30 463 600 2.8E-5 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 Gene3D G3DSA:3.40.50.1000 270 394 3.0E-8 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS33795 b7ad6a74d83b92384c8ba84e351c63da 628 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 272 394 2.3E-16 T 06-07-2017 IPR010033 HAD-superfamily phosphatase, subfamily IIIC CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 SMART SM00418 23 101 3.8E-25 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 SUPERFAMILY SSF46785 12 104 2.09E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 2.4E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 25 40 2.4E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 72 87 2.4E-11 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 Pfam PF01022 Bacterial regulatory protein, arsR family 31 75 8.6E-14 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18650 03c316609a44cd7ae1aea866a379d6d5 105 Gene3D G3DSA:1.10.10.10 14 104 2.3E-35 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 Gene3D G3DSA:1.20.1250.20 267 430 2.4E-6 T 06-07-2017 CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 Gene3D G3DSA:1.20.1250.20 490 511 2.4E-6 T 06-07-2017 CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 Gene3D G3DSA:1.20.1250.20 24 193 7.9E-9 T 06-07-2017 CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 SUPERFAMILY SSF103473 489 512 6.8E-19 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 SUPERFAMILY SSF103473 19 207 6.8E-19 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 SUPERFAMILY SSF103473 257 429 6.8E-19 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS04840 3cafa66f37985f88090b1cfce72d0f46 531 Pfam PF07690 Major Facilitator Superfamily 24 419 1.2E-11 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 Pfam PF01715 IPP transferase 44 289 5.8E-67 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 11 298 26.662 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 Gene3D G3DSA:1.10.287.890 207 288 3.0E-31 T 06-07-2017 CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 SUPERFAMILY SSF52540 12 155 4.69E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 Gene3D G3DSA:3.40.50.300 10 178 2.7E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16705 348ac544241db6a867885fb8b503f341 303 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 11 297 1.4E-75 T 06-07-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 Pfam PF00480 ROK family 103 392 5.3E-17 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 Gene3D G3DSA:3.30.420.40 97 240 1.2E-22 T 06-07-2017 CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 SUPERFAMILY SSF53067 101 394 5.77E-32 T 06-07-2017 CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 Gene3D G3DSA:1.10.10.10 28 96 4.1E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 SUPERFAMILY SSF46785 29 95 2.35E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 Pfam PF13412 Winged helix-turn-helix DNA-binding 32 75 3.3E-8 T 06-07-2017 CDO28_RS08135 fb5404fbffcf2926727ec377789b8107 409 Gene3D G3DSA:3.30.420.40 241 365 6.2E-17 T 06-07-2017 CDO28_RS18095 7f49a9767f2a5acc0c8bf00e4b85fe89 86 SUPERFAMILY SSF48295 13 51 3.35E-8 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS18095 7f49a9767f2a5acc0c8bf00e4b85fe89 86 Pfam PF01527 Transposase 17 51 5.5E-12 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS18095 7f49a9767f2a5acc0c8bf00e4b85fe89 86 Gene3D G3DSA:1.10.10.60 21 51 9.6E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17415 cef3c336871a8bee12d91c6a654386ca 683 Pfam PF14574 Domain of unknown function (DUF4445) 222 642 4.1E-134 T 06-07-2017 IPR027980 Protein of unknown function DUF4445 CDO28_RS17415 cef3c336871a8bee12d91c6a654386ca 683 SUPERFAMILY SSF54292 14 114 6.95E-19 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS17415 cef3c336871a8bee12d91c6a654386ca 683 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 18 102 3.5E-6 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS17415 cef3c336871a8bee12d91c6a654386ca 683 Gene3D G3DSA:3.10.20.30 14 117 1.3E-17 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS07705 a0ec420f9238165232207365657b005f 538 SUPERFAMILY SSF53649 260 484 2.62E-18 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS07705 a0ec420f9238165232207365657b005f 538 Pfam PF00884 Sulfatase 260 484 3.8E-17 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS07705 a0ec420f9238165232207365657b005f 538 Gene3D G3DSA:3.40.720.10 260 483 9.8E-10 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 Gene3D G3DSA:3.40.50.720 4 243 8.3E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 1.2E-56 T 06-07-2017 CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 SUPERFAMILY SSF51735 1 244 4.38E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 4.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 4.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 4.0E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.4E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS26205 7822f190f2feb663da571c8079909c29 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 Pfam PF00005 ABC transporter 274 433 1.9E-17 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 Pfam PF00005 ABC transporter 22 169 1.0E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 SMART SM00382 30 218 4.6E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 SMART SM00382 283 482 0.36 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 SUPERFAMILY SSF52540 250 492 7.71E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 SUPERFAMILY SSF52540 5 227 1.27E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 Gene3D G3DSA:3.40.50.300 250 491 8.4E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09960 4cc6f83787a977fcc583acbf3f89617b 511 Gene3D G3DSA:3.40.50.300 2 230 4.4E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11765 3a15f96775cebe3e68f6b42061e61772 179 SUPERFAMILY SSF50882 89 179 3.66E-16 T 06-07-2017 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 CDO28_RS11765 3a15f96775cebe3e68f6b42061e61772 179 Pfam PF02974 Protease inhibitor Inh 89 179 2.6E-24 T 06-07-2017 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 CDO28_RS11765 3a15f96775cebe3e68f6b42061e61772 179 Gene3D G3DSA:2.40.128.10 92 179 1.4E-4 T 06-07-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 CDO28_RS11765 3a15f96775cebe3e68f6b42061e61772 179 PIRSF PIRSF034005 3 179 5.1E-79 T 06-07-2017 IPR010571 Outer membrane lipoprotein, Omp19, bacterial GO:0019867 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.30.9.10 268 301 9.5E-7 T 06-07-2017 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.30.9.10 137 189 9.5E-7 T 06-07-2017 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.50.50.60 110 132 4.9E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.50.50.60 4 60 4.9E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.50.50.60 190 267 4.9E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Gene3D G3DSA:3.50.50.60 356 415 4.9E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 SUPERFAMILY SSF54373 271 356 1.27E-9 T 06-07-2017 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 SUPERFAMILY SSF51905 4 56 1.29E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 SUPERFAMILY SSF51905 109 269 1.29E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 SUPERFAMILY SSF51905 356 414 1.29E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18285 4e69093051fda7a93a2636409f1317fb 417 Pfam PF01266 FAD dependent oxidoreductase 6 394 1.9E-48 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS21405 b5e35b3e2fcb90b8347c0add0af76bd4 392 SUPERFAMILY SSF56529 158 361 8.37E-26 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS21405 b5e35b3e2fcb90b8347c0add0af76bd4 392 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 217 360 4.2E-6 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS21405 b5e35b3e2fcb90b8347c0add0af76bd4 392 Gene3D G3DSA:3.90.850.10 171 361 1.1E-21 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 Gene3D G3DSA:1.10.10.10 2 65 3.5E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 SMART SM00346 7 95 4.7E-20 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 4 247 7.6E-104 T 06-07-2017 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 SUPERFAMILY SSF55781 71 247 7.19E-49 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 Pfam PF09339 IclR helix-turn-helix domain 11 60 4.7E-12 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 Pfam PF01614 Bacterial transcriptional regulator 122 246 2.8E-34 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 Gene3D G3DSA:3.30.450.40 73 247 1.5E-56 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS30215 010f2893409c3125805aae2aa3c1c508 251 SUPERFAMILY SSF46785 8 78 1.33E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 Gene3D G3DSA:3.40.50.720 111 281 1.4E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 30 310 9.4E-21 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 279 6.2E-47 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 SUPERFAMILY SSF51735 97 280 4.73E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 SUPERFAMILY SSF52283 3 133 4.73E-30 T 06-07-2017 CDO28_RS12780 4b478a72b57c60acb9e55fc92678e348 322 Gene3D G3DSA:3.40.50.720 3 110 1.5E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23860 a9c257d38c38f1b4c425781c45782508 361 SUPERFAMILY SSF55347 134 291 4.25E-16 T 06-07-2017 CDO28_RS23860 a9c257d38c38f1b4c425781c45782508 361 Gene3D G3DSA:3.30.360.10 145 354 8.3E-16 T 06-07-2017 CDO28_RS23860 a9c257d38c38f1b4c425781c45782508 361 SUPERFAMILY SSF51735 3 177 2.06E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23860 a9c257d38c38f1b4c425781c45782508 361 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 128 1.2E-17 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS23860 a9c257d38c38f1b4c425781c45782508 361 Gene3D G3DSA:3.40.50.720 2 144 1.1E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06345 d245e9d4fc7479f920951ea8f83bfffd 256 Pfam PF05175 Methyltransferase small domain 43 178 4.6E-10 T 06-07-2017 IPR007848 Methyltransferase small domain GO:0008168 CDO28_RS06345 d245e9d4fc7479f920951ea8f83bfffd 256 SUPERFAMILY SSF53335 28 207 4.67E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06345 d245e9d4fc7479f920951ea8f83bfffd 256 SUPERFAMILY SSF53335 236 245 4.67E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06345 d245e9d4fc7479f920951ea8f83bfffd 256 Gene3D G3DSA:3.40.50.150 31 247 2.0E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06345 d245e9d4fc7479f920951ea8f83bfffd 256 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 126 132 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS15885 0c0c838ef6d1302c68c926ae4d2082e2 515 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 13 509 5.7E-136 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS15885 0c0c838ef6d1302c68c926ae4d2082e2 515 PIRSF PIRSF037567 1 513 7.0E-124 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS12810 211ddaf3b4747451ebaf2d1fb37ec3ec 466 SUPERFAMILY SSF52467 292 465 1.52E-76 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS12810 211ddaf3b4747451ebaf2d1fb37ec3ec 466 Gene3D G3DSA:3.40.50.1220 289 465 4.4E-86 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS12810 211ddaf3b4747451ebaf2d1fb37ec3ec 466 PIRSF PIRSF000204 1 466 2.0E-214 T 06-07-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CDO28_RS12810 211ddaf3b4747451ebaf2d1fb37ec3ec 466 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 462 3.4E-191 T 06-07-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 SUPERFAMILY SSF46689 4 69 9.93E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 Gene3D G3DSA:1.10.10.60 3 52 3.9E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 54 2.5E-15 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 Gene3D G3DSA:1.10.357.10 53 181 5.5E-10 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.3E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.3E-7 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS19010 ce2bd8b8faa54fb7abb512dc3765bf70 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 Gene3D G3DSA:2.40.50.100 98 128 3.6E-13 T 06-07-2017 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 Gene3D G3DSA:2.40.50.100 322 357 3.6E-13 T 06-07-2017 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 55 473 1.2E-102 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 Pfam PF13437 HlyD family secretion protein 325 432 4.9E-17 T 06-07-2017 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 370 394 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 394 417 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 437 452 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 337 358 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 452 472 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 106 126 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 64 87 7.2E-47 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS27190 c1bfcb65d928c359f3b0c64bd65acc09 473 SUPERFAMILY SSF111369 262 447 2.62E-7 T 06-07-2017 CDO28_RS19120 ad90bc06ee1834152782c6ce887286fa 440 Gene3D G3DSA:3.40.50.1820 140 356 6.5E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19120 ad90bc06ee1834152782c6ce887286fa 440 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 124 351 1.3E-86 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS19120 ad90bc06ee1834152782c6ce887286fa 440 SUPERFAMILY SSF53474 120 304 2.9E-14 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19120 ad90bc06ee1834152782c6ce887286fa 440 PIRSF PIRSF033909 11 382 5.9E-164 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 Gene3D G3DSA:3.40.50.300 627 729 2.8E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 Pfam PF00270 DEAD/DEAH box helicase 280 424 4.6E-18 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 SUPERFAMILY SSF52540 637 726 5.5E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 SUPERFAMILY SSF52540 549 595 5.5E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 SUPERFAMILY SSF52540 289 467 5.5E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 Gene3D G3DSA:3.40.50.300 278 462 1.7E-22 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 SMART SM00487 274 501 2.1E-13 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 SMART SM00490 631 713 5.1E-6 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS18545 93dcaa4f1fa45df6fff7af1911549553 1197 Pfam PF00271 Helicase conserved C-terminal domain 639 712 2.0E-5 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS06805 b253c88d8f863cade455c16bee6ce570 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 119 3.3E-6 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS06805 b253c88d8f863cade455c16bee6ce570 127 Gene3D G3DSA:3.10.180.10 4 123 3.0E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS06805 b253c88d8f863cade455c16bee6ce570 127 SUPERFAMILY SSF54593 3 126 7.19E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS28995 7116e5e10ac5053ccfba49fad9eb50cb 253 SUPERFAMILY SSF52540 4 220 9.75E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28995 7116e5e10ac5053ccfba49fad9eb50cb 253 SMART SM00382 29 209 5.2E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28995 7116e5e10ac5053ccfba49fad9eb50cb 253 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28995 7116e5e10ac5053ccfba49fad9eb50cb 253 Gene3D G3DSA:3.40.50.300 5 230 2.2E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28995 7116e5e10ac5053ccfba49fad9eb50cb 253 Pfam PF00005 ABC transporter 25 159 1.0E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.0E-19 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 SUPERFAMILY SSF46785 2 59 8.24E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 Gene3D G3DSA:3.30.70.920 66 151 1.3E-20 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 Gene3D G3DSA:1.10.10.10 4 55 8.0E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 SUPERFAMILY SSF54909 67 151 4.83E-19 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.5E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.5E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.5E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 SMART SM00344 3 112 1.6E-34 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS32675 2a2ea7e19a649e2efcd1dc45c6d38cf3 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 2.0E-18 T 06-07-2017 CDO28_RS00555 b58395145cf2f0787aa2617ea7d9720c 441 Pfam PF01551 Peptidase family M23 333 426 5.8E-34 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS00555 b58395145cf2f0787aa2617ea7d9720c 441 SUPERFAMILY SSF51261 301 430 2.82E-55 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS00555 b58395145cf2f0787aa2617ea7d9720c 441 Gene3D G3DSA:2.70.70.10 296 431 3.2E-49 T 06-07-2017 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 287 329 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 SUPERFAMILY SSF46689 233 284 8.06E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 SUPERFAMILY SSF46689 286 337 1.39E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 Gene3D G3DSA:1.10.10.60 238 286 8.1E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 SMART SM00342 250 333 1.1E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 Pfam PF12833 Helix-turn-helix domain 258 335 4.4E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 SUPERFAMILY SSF52317 12 215 4.89E-29 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 Gene3D G3DSA:1.10.10.60 287 337 1.1E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21905 49ad395282bce451b5cc2c9b8499b260 348 Gene3D G3DSA:3.40.50.880 15 237 2.3E-34 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS31500 2c3bd025c744c5593609a2388fab8ae7 395 SUPERFAMILY SSF53822 53 358 2.69E-26 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS31500 2c3bd025c744c5593609a2388fab8ae7 395 Pfam PF13458 Periplasmic binding protein 81 358 6.2E-13 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS31500 2c3bd025c744c5593609a2388fab8ae7 395 Gene3D G3DSA:3.40.50.2300 120 204 2.0E-6 T 06-07-2017 CDO28_RS31500 2c3bd025c744c5593609a2388fab8ae7 395 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 41 391 2.1E-151 T 06-07-2017 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 Pfam PF03861 ANTAR domain 137 189 1.2E-10 T 06-07-2017 IPR005561 ANTAR domain GO:0003723 CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 Gene3D G3DSA:1.10.10.10 137 193 5.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 PIRSF PIRSF036382 2 196 1.9E-50 T 06-07-2017 IPR008327 Signal transduction response regulator, antiterminator CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 SUPERFAMILY SSF52172 5 189 4.05E-32 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 Gene3D G3DSA:3.40.50.2300 2 125 7.4E-35 T 06-07-2017 CDO28_RS17595 c02fd358f217ae5c3fd68922878b2034 204 SMART SM01012 134 189 5.0E-13 T 06-07-2017 IPR005561 ANTAR domain GO:0003723 CDO28_RS06980 825571b1f39e0dbddb4fac0076e052ee 350 Pfam PF01435 Peptidase family M48 169 344 1.5E-25 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDO28_RS06980 825571b1f39e0dbddb4fac0076e052ee 350 Gene3D G3DSA:3.30.2010.10 198 246 2.1E-10 T 06-07-2017 CDO28_RS01455 6121c636e8ea47b1d74bf31a26383898 458 Pfam PF04466 Phage terminase large subunit 22 447 7.8E-55 T 06-07-2017 IPR006437 Bacteriophage terminase, large subunit GO:0006323 CDO28_RS01455 6121c636e8ea47b1d74bf31a26383898 458 TIGRFAM TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family 23 232 2.4E-44 T 06-07-2017 IPR006437 Bacteriophage terminase, large subunit GO:0006323 CDO28_RS02100 cee73fce706f8d8065d12adb237ed128 512 Pfam PF06742 Protein of unknown function (DUF1214) 387 495 2.6E-31 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS02100 cee73fce706f8d8065d12adb237ed128 512 Gene3D G3DSA:2.60.120.600 338 510 3.3E-54 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS02100 cee73fce706f8d8065d12adb237ed128 512 Pfam PF06863 Protein of unknown function (DUF1254) 120 249 7.5E-32 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS02100 cee73fce706f8d8065d12adb237ed128 512 Gene3D G3DSA:2.60.40.1610 120 260 1.3E-15 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS02100 cee73fce706f8d8065d12adb237ed128 512 SUPERFAMILY SSF160935 58 509 3.01E-114 T 06-07-2017 CDO28_RS27020 a0550fd828a3c04b500f057339d313fa 367 Pfam PF00535 Glycosyl transferase family 2 7 164 3.0E-35 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS27020 a0550fd828a3c04b500f057339d313fa 367 Gene3D G3DSA:3.90.550.10 4 228 3.3E-56 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27020 a0550fd828a3c04b500f057339d313fa 367 SUPERFAMILY SSF53448 4 223 2.74E-60 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS08875 fffc0feda756e244d5e94a1a77800361 122 SUPERFAMILY SSF52980 15 121 4.96E-25 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDO28_RS08875 fffc0feda756e244d5e94a1a77800361 122 Pfam PF02021 Uncharacterised protein family UPF0102 20 109 2.7E-19 T 06-07-2017 IPR003509 Uncharacterised protein family UPF0102 CDO28_RS08875 fffc0feda756e244d5e94a1a77800361 122 Gene3D G3DSA:3.40.1350.10 20 122 3.4E-29 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 CDO28_RS08875 fffc0feda756e244d5e94a1a77800361 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 13 122 19.156 T 06-07-2017 IPR003509 Uncharacterised protein family UPF0102 CDO28_RS23035 b88f3547f138684355381cbc502bf2d0 105 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 80 91 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS23035 b88f3547f138684355381cbc502bf2d0 105 SUPERFAMILY SSF46548 13 96 5.18E-15 T 06-07-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 CDO28_RS23035 b88f3547f138684355381cbc502bf2d0 105 Pfam PF12838 4Fe-4S dicluster domain 25 93 2.8E-8 T 06-07-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDO28_RS23035 b88f3547f138684355381cbc502bf2d0 105 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 5 98 5.5E-40 T 06-07-2017 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific CDO28_RS23035 b88f3547f138684355381cbc502bf2d0 105 Gene3D G3DSA:3.30.70.20 16 98 2.9E-13 T 06-07-2017 CDO28_RS10580 a8317c2378e724eae99fb494e98e891a 125 SUPERFAMILY SSF47413 3 68 1.74E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10580 a8317c2378e724eae99fb494e98e891a 125 Pfam PF13560 Helix-turn-helix domain 4 64 7.7E-14 T 06-07-2017 CDO28_RS10580 a8317c2378e724eae99fb494e98e891a 125 Gene3D G3DSA:1.10.260.40 4 115 3.8E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10580 a8317c2378e724eae99fb494e98e891a 125 SMART SM00530 7 63 6.7E-14 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 SUPERFAMILY SSF144052 15 418 5.1E-144 T 06-07-2017 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 Pfam PF02073 Thermophilic metalloprotease (M29) 16 417 4.5E-165 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 89 108 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 398 417 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 24 41 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 333 354 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 254 273 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 165 187 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 310 330 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS09050 6df940ed71918b8263b9ec25d7a77dfa 418 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 372 394 6.0E-72 T 06-07-2017 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 Pfam PF09339 IclR helix-turn-helix domain 19 68 2.7E-9 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 Gene3D G3DSA:1.10.10.10 2 74 1.9E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 Gene3D G3DSA:3.30.450.40 90 259 1.8E-53 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 Pfam PF01614 Bacterial transcriptional regulator 132 257 2.4E-32 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 SMART SM00346 16 105 3.0E-8 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 SUPERFAMILY SSF55781 73 258 4.97E-46 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS06455 832b51888f5bc667a3c07f73b779d118 284 SUPERFAMILY SSF46785 18 87 1.23E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12740 a678cdbf54cf45e52e577ede72ce8c4e 196 Gene3D G3DSA:3.40.630.30 45 152 1.1E-16 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS12740 a678cdbf54cf45e52e577ede72ce8c4e 196 Pfam PF13527 Acetyltransferase (GNAT) domain 55 144 2.8E-10 T 06-07-2017 CDO28_RS12740 a678cdbf54cf45e52e577ede72ce8c4e 196 SUPERFAMILY SSF55729 23 146 1.71E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00870 aedf933db3c912897d311199e67818bc 336 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 308 3.7E-82 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS00870 aedf933db3c912897d311199e67818bc 336 SUPERFAMILY SSF53850 116 216 6.02E-5 T 06-07-2017 CDO28_RS00870 aedf933db3c912897d311199e67818bc 336 PIRSF PIRSF006470 1 332 4.4E-78 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS00870 aedf933db3c912897d311199e67818bc 336 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 289 4.4E-75 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS14680 7f2c50e5c4669ad30c24125ceeac35a3 392 Gene3D G3DSA:3.40.640.10 53 259 5.1E-54 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS14680 7f2c50e5c4669ad30c24125ceeac35a3 392 SUPERFAMILY SSF53383 1 387 6.97E-86 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS14680 7f2c50e5c4669ad30c24125ceeac35a3 392 Gene3D G3DSA:3.90.1150.10 260 384 1.9E-16 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS14680 7f2c50e5c4669ad30c24125ceeac35a3 392 Pfam PF00155 Aminotransferase class I and II 43 383 1.4E-39 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS25605 39488b736d710933435a06b206a29c10 200 Gene3D G3DSA:3.40.50.1820 2 199 6.0E-55 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS25605 39488b736d710933435a06b206a29c10 200 SUPERFAMILY SSF53474 8 199 1.83E-45 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS01020 642b784c0ba9d2fc7e2b25fcb034925a 356 Pfam PF02608 Basic membrane protein 27 307 4.4E-53 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS01020 642b784c0ba9d2fc7e2b25fcb034925a 356 Gene3D G3DSA:3.40.50.2300 24 163 4.9E-44 T 06-07-2017 CDO28_RS01020 642b784c0ba9d2fc7e2b25fcb034925a 356 Gene3D G3DSA:3.40.50.2300 180 234 0.001 T 06-07-2017 CDO28_RS20010 cc3bbc6d0cdfabeb50ad0da2ec458e61 107 SUPERFAMILY SSF110849 32 104 5.1E-11 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS20010 cc3bbc6d0cdfabeb50ad0da2ec458e61 107 Pfam PF02195 ParB-like nuclease domain 44 104 3.5E-8 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS20010 cc3bbc6d0cdfabeb50ad0da2ec458e61 107 Gene3D G3DSA:3.90.1530.10 20 104 6.8E-15 T 06-07-2017 CDO28_RS05740 6d9a913d15bbd47dd162f4f312bf1b1c 228 Pfam PF03734 L,D-transpeptidase catalytic domain 90 227 1.1E-16 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS05740 6d9a913d15bbd47dd162f4f312bf1b1c 228 Gene3D G3DSA:2.40.440.10 86 227 3.3E-32 T 06-07-2017 CDO28_RS05740 6d9a913d15bbd47dd162f4f312bf1b1c 228 SUPERFAMILY SSF141523 166 227 2.49E-30 T 06-07-2017 CDO28_RS05740 6d9a913d15bbd47dd162f4f312bf1b1c 228 SUPERFAMILY SSF141523 87 136 2.49E-30 T 06-07-2017 CDO28_RS13055 d8f6e7a6feafb0ec41acbafa5371fdad 348 Pfam PF01212 Beta-eliminating lyase 3 293 6.1E-56 T 06-07-2017 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 CDO28_RS13055 d8f6e7a6feafb0ec41acbafa5371fdad 348 PIRSF PIRSF038940 1 348 5.6E-145 T 06-07-2017 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 CDO28_RS13055 d8f6e7a6feafb0ec41acbafa5371fdad 348 Gene3D G3DSA:3.90.1150.10 253 347 5.8E-25 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS13055 d8f6e7a6feafb0ec41acbafa5371fdad 348 Gene3D G3DSA:3.40.640.10 3 250 3.9E-55 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS13055 d8f6e7a6feafb0ec41acbafa5371fdad 348 SUPERFAMILY SSF53383 3 347 5.01E-92 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS06670 5bb54ce2d4adb8ef6d1130d2c56a8795 128 Pfam PF03713 Domain of unknown function (DUF305) 36 123 1.8E-19 T 06-07-2017 IPR005183 Domain of unknown function DUF305 CDO28_RS06670 5bb54ce2d4adb8ef6d1130d2c56a8795 128 Gene3D G3DSA:1.20.1260.10 28 124 1.4E-24 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS34045 9081bad0364f91359e34de699a115236 358 Pfam PF01609 Transposase DDE domain 99 326 5.7E-17 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS34045 9081bad0364f91359e34de699a115236 358 Pfam PF13808 DDE_Tnp_1-associated 6 89 5.9E-29 T 06-07-2017 IPR032806 H repeat-associated protein, N-terminal CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.0E-7 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 1.0E-7 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 1.0E-7 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 302 1.0E-7 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 SUPERFAMILY SSF51905 1 336 1.31E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 Gene3D G3DSA:3.50.50.60 103 330 9.2E-28 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 323 2.6E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 Gene3D G3DSA:3.50.50.60 2 102 7.5E-23 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 295 302 8.5E-6 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.5E-6 T 06-07-2017 CDO28_RS16895 bd7a2cd25ff75e113e9ceba59860fa78 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 184 8.5E-6 T 06-07-2017 CDO28_RS13465 f8f28bb7c7ad8778f559cde8f6340b04 392 SUPERFAMILY SSF53383 11 381 6.15E-76 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS13465 f8f28bb7c7ad8778f559cde8f6340b04 392 PIRSF PIRSF000525 8 384 2.5E-54 T 06-07-2017 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CDO28_RS13465 f8f28bb7c7ad8778f559cde8f6340b04 392 Pfam PF00266 Aminotransferase class-V 140 311 1.4E-6 T 06-07-2017 IPR000192 Aminotransferase class V domain CDO28_RS13465 f8f28bb7c7ad8778f559cde8f6340b04 392 Gene3D G3DSA:3.40.640.10 25 265 4.2E-48 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS13465 f8f28bb7c7ad8778f559cde8f6340b04 392 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 10 382 1.9E-215 T 06-07-2017 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52 CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 SMART SM00271 152 210 4.9E-15 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 Pfam PF00226 DnaJ domain 154 207 8.1E-14 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 SUPERFAMILY SSF46565 117 207 2.22E-15 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 PRINTS PR00625 DnaJ domain signature 190 210 3.9E-11 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 PRINTS PR00625 DnaJ domain signature 155 173 3.9E-11 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 PRINTS PR00625 DnaJ domain signature 173 188 3.9E-11 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS13760 1bf99cb784c3737289ad5890b82b323b 211 Gene3D G3DSA:1.10.287.110 151 207 4.7E-14 T 06-07-2017 IPR001623 DnaJ domain CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 Gene3D G3DSA:3.40.50.720 6 245 1.2E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 SUPERFAMILY SSF51735 6 245 5.0E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 7.5E-66 T 06-07-2017 CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.1E-36 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 184 6.3E-7 T 06-07-2017 CDO28_RS00895 f6d9eaec6116e07a158f4153d79c4852 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 Pfam PF07728 AAA domain (dynein-related subfamily) 67 191 1.9E-10 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 SUPERFAMILY SSF52540 37 307 6.75E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 7 40 3.4E-17 T 06-07-2017 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 242 292 3.3E-4 T 06-07-2017 IPR013615 CbbQ/NirQ/NorQ, C-terminal CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 1 326 8.9E-197 T 06-07-2017 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 CDO28_RS13765 07db982edc20368e7fff22aff6447ddf 331 Gene3D G3DSA:3.40.50.300 56 229 1.1E-24 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31620 77fa907beb22e39378800ca7ede248de 79 Gene3D G3DSA:3.30.429.20 1 71 3.4E-23 T 06-07-2017 CDO28_RS31620 77fa907beb22e39378800ca7ede248de 79 SUPERFAMILY SSF55331 2 72 1.97E-16 T 06-07-2017 IPR014347 Tautomerase/MIF superfamily CDO28_RS31620 77fa907beb22e39378800ca7ede248de 79 Pfam PF01361 Tautomerase enzyme 2 64 2.1E-14 T 06-07-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CDO28_RS22230 b0cc1f7204a7a8f5a414c23ec3a461c4 309 Gene3D G3DSA:3.40.50.2300 140 305 1.1E-51 T 06-07-2017 CDO28_RS22230 b0cc1f7204a7a8f5a414c23ec3a461c4 309 Gene3D G3DSA:3.40.50.2300 22 139 2.1E-28 T 06-07-2017 CDO28_RS22230 b0cc1f7204a7a8f5a414c23ec3a461c4 309 Pfam PF13407 Periplasmic binding protein domain 23 284 1.1E-55 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS22230 b0cc1f7204a7a8f5a414c23ec3a461c4 309 SUPERFAMILY SSF53822 22 305 7.07E-82 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32495 d4179f1dd80acbda61695047761f3e78 283 SUPERFAMILY SSF161098 15 273 3.27E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32495 d4179f1dd80acbda61695047761f3e78 283 Gene3D G3DSA:1.10.3720.10 16 273 4.2E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32495 d4179f1dd80acbda61695047761f3e78 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 270 5.6E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02950 069b5251b63c2452b576d1ef85224a4c 117 TIGRFAM TIGR01841 phasin: phasin family protein 26 111 1.4E-9 T 06-07-2017 IPR010127 Phasin, subfamily 1 CDO28_RS02950 069b5251b63c2452b576d1ef85224a4c 117 Pfam PF09361 Phasin protein 7 102 2.3E-25 T 06-07-2017 IPR018968 Phasin CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 ProSitePatterns PS00191 Cytochrome b5 family, heme-binding domain signature. 162 169 - T 06-07-2017 IPR018506 Cytochrome b5, heme-binding site GO:0020037 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Gene3D G3DSA:3.40.50.20 1 140 2.0E-19 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 SUPERFAMILY SSF52440 1 130 4.6E-18 T 06-07-2017 IPR016185 Pre-ATP-grasp domain CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 130 5.7E-16 T 06-07-2017 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Gene3D G3DSA:3.30.470.20 205 317 4.4E-33 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Gene3D G3DSA:3.30.1490.20 150 204 2.5E-19 T 06-07-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Hamap MF_00162 Glutathione synthetase [gshB]. 1 333 95.814 T 06-07-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 SUPERFAMILY SSF56059 134 329 7.28E-44 T 06-07-2017 CDO28_RS27875 d62c8532cfcba7cf44c2b8a8060363f3 348 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 135 313 1.1E-52 T 06-07-2017 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDO28_RS03410 60a584624acdde30052fa5bf98d0d67c 438 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 433 38.827 T 06-07-2017 IPR006698 Uncharacterised protein family UPF0229 CDO28_RS03410 60a584624acdde30052fa5bf98d0d67c 438 Pfam PF04285 Protein of unknown function (DUF444) 4 431 1.9E-166 T 06-07-2017 IPR006698 Uncharacterised protein family UPF0229 CDO28_RS05725 db36265d8300e3f2f812a9825d6a5425 70 SUPERFAMILY SSF82057 3 70 1.05E-25 T 06-07-2017 CDO28_RS05725 db36265d8300e3f2f812a9825d6a5425 70 Gene3D G3DSA:2.30.30.40 3 70 1.4E-31 T 06-07-2017 CDO28_RS05725 db36265d8300e3f2f812a9825d6a5425 70 Pfam PF03831 PhnA domain 3 70 2.7E-30 T 06-07-2017 IPR013988 PhnA protein, C-terminal CDO28_RS30175 078b5ca1a6ddbb4f9fd547048fc9bc17 135 Pfam PF02627 Carboxymuconolactone decarboxylase family 41 122 1.1E-20 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS30175 078b5ca1a6ddbb4f9fd547048fc9bc17 135 Gene3D G3DSA:1.20.1290.10 9 129 1.6E-22 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS30175 078b5ca1a6ddbb4f9fd547048fc9bc17 135 SUPERFAMILY SSF69118 9 127 1.44E-33 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS30175 078b5ca1a6ddbb4f9fd547048fc9bc17 135 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 9 128 4.5E-60 T 06-07-2017 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 SUPERFAMILY SSF47090 101 177 6.59E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 SUPERFAMILY SSF141523 302 351 1.83E-15 T 06-07-2017 CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 SUPERFAMILY SSF141523 194 250 1.83E-15 T 06-07-2017 CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 Pfam PF03734 L,D-transpeptidase catalytic domain 196 364 2.5E-26 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 Pfam PF01471 Putative peptidoglycan binding domain 112 169 9.2E-9 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 Gene3D G3DSA:1.10.101.10 101 176 5.8E-16 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 Gene3D G3DSA:2.40.440.10 195 241 9.1E-10 T 06-07-2017 CDO28_RS04455 a623ae6545867c71622b2d6ff73e62c3 443 Gene3D G3DSA:2.40.440.10 304 351 9.1E-10 T 06-07-2017 CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 Pfam PF00107 Zinc-binding dehydrogenase 177 303 5.1E-38 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 SUPERFAMILY SSF51735 143 313 1.97E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 SMART SM00829 5 339 1.4E-24 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 Gene3D G3DSA:3.40.50.720 172 288 6.1E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 SUPERFAMILY SSF50129 1 179 9.28E-43 T 06-07-2017 IPR011032 GroES-like CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 133 2.3E-24 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS17675 0463a82fb7725a9c64d08392a7afdd52 342 Gene3D G3DSA:3.90.180.10 1 171 3.3E-36 T 06-07-2017 IPR011032 GroES-like CDO28_RS21800 618cd3af565c7e66a04757d065622e1c 242 SUPERFAMILY SSF52266 35 231 8.75E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS21800 618cd3af565c7e66a04757d065622e1c 242 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 206 3.3E-8 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS21800 618cd3af565c7e66a04757d065622e1c 242 Gene3D G3DSA:3.40.50.1110 35 231 1.6E-12 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS15680 2ed93647f3f9c290ce556f42738abea3 134 Pfam PF12680 SnoaL-like domain 9 118 4.0E-13 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS15680 2ed93647f3f9c290ce556f42738abea3 134 Gene3D G3DSA:3.10.450.50 1 132 2.1E-19 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS15680 2ed93647f3f9c290ce556f42738abea3 134 SUPERFAMILY SSF54427 1 133 1.65E-21 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS15680 2ed93647f3f9c290ce556f42738abea3 134 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 6 133 4.7E-42 T 06-07-2017 IPR011721 Conserved hypothetical protein CHP02096 CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 Pfam PF00589 Phage integrase family 166 315 1.4E-32 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 Gene3D G3DSA:1.10.443.10 145 323 1.0E-45 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 37 123 4.8E-15 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 Gene3D G3DSA:1.10.150.130 36 127 5.0E-21 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 33 330 52.958 T 06-07-2017 IPR023009 Tyrosine recombinase XerC/XerD CDO28_RS11835 987df14eca25520cf65383a9668503f1 330 SUPERFAMILY SSF56349 36 322 1.24E-47 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 SUPERFAMILY SSF51430 16 286 9.69E-64 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 PRINTS PR00069 Aldo-keto reductase signature 150 167 1.2E-8 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 PRINTS PR00069 Aldo-keto reductase signature 49 73 1.2E-8 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 PRINTS PR00069 Aldo-keto reductase signature 220 244 1.2E-8 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 Gene3D G3DSA:3.20.20.100 17 286 1.1E-60 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24020 25a366bd13cb3fbdf5b69147da8d82dc 289 Pfam PF00248 Aldo/keto reductase family 21 285 6.6E-49 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 Gene3D G3DSA:3.10.580.10 251 367 5.5E-15 T 06-07-2017 CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 SUPERFAMILY SSF52540 1 243 1.11E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 19 366 1.3E-104 T 06-07-2017 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 SUPERFAMILY SSF54631 253 366 2.04E-15 T 06-07-2017 CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 SMART SM00382 30 217 4.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 Gene3D G3DSA:3.40.50.300 1 240 6.0E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 Pfam PF00005 ABC transporter 21 167 9.4E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 Pfam PF00571 CBS domain 254 295 1.6E-4 T 06-07-2017 IPR000644 CBS domain CDO28_RS24590 b213c17fffbf9fc200c19f00cf1e267a 371 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13030 70ffe6879b1fb9e9d4dcd2c6677d8dcd 312 SUPERFAMILY SSF161098 99 296 2.49E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13030 70ffe6879b1fb9e9d4dcd2c6677d8dcd 312 Gene3D G3DSA:1.10.3720.10 99 307 6.8E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13030 70ffe6879b1fb9e9d4dcd2c6677d8dcd 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 311 9.5E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Gene3D G3DSA:2.70.98.40 1588 1881 5.7E-82 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Gene3D G3DSA:2.70.98.40 2088 2411 7.3E-78 T 06-07-2017 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 SUPERFAMILY SSF48208 2362 2849 1.09E-92 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Gene3D G3DSA:2.60.420.10 2802 2847 5.0E-10 T 06-07-2017 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Pfam PF06165 Glycosyltransferase family 36 2111 2352 1.1E-63 T 06-07-2017 IPR010383 Glycosyl hydrolase 94 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Pfam PF06165 Glycosyltransferase family 36 1600 1845 5.3E-62 T 06-07-2017 IPR010383 Glycosyl hydrolase 94 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 SUPERFAMILY SSF74650 2088 2354 2.42E-81 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Pfam PF10091 Putative glucoamylase 1338 1543 2.5E-11 T 06-07-2017 IPR019282 Domain of unknown function DUF2329 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2382 2809 4.0E-108 T 06-07-2017 IPR033432 Glycosyl hydrolase 36, catalytic domain CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 Pfam PF11329 Protein of unknown function (DUF3131) 1040 1136 6.2E-5 T 06-07-2017 IPR021478 Protein of unknown function DUF3131 CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 SMART SM01068 2088 2153 1.5E-32 T 06-07-2017 IPR009342 Putative carbohydrate binding domain CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 SMART SM01068 1575 1635 5.1E-21 T 06-07-2017 IPR009342 Putative carbohydrate binding domain CDO28_RS10930 e05c79302c3b4d46d63ca6817e8dd058 2870 SUPERFAMILY SSF74650 1587 1848 1.63E-78 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Gene3D G3DSA:3.30.9.10 102 154 7.3E-13 T 06-07-2017 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Gene3D G3DSA:3.30.9.10 234 375 7.3E-13 T 06-07-2017 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 SUPERFAMILY SSF51905 21 234 9.71E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 SUPERFAMILY SSF51905 376 434 9.71E-59 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Pfam PF01266 FAD dependent oxidoreductase 22 415 1.3E-66 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Gene3D G3DSA:3.50.50.60 155 233 2.0E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Gene3D G3DSA:3.50.50.60 14 97 2.0E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12445 6e30097cc1e7177913d66daa2999ebc2 445 Gene3D G3DSA:3.50.50.60 376 435 2.0E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 Gene3D G3DSA:1.10.10.10 1 84 2.7E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 Pfam PF03466 LysR substrate binding domain 89 279 3.2E-16 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 SUPERFAMILY SSF46785 1 85 1.77E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.9E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 SUPERFAMILY SSF53850 88 284 4.89E-16 T 06-07-2017 CDO28_RS25300 f0b9643b756056da08783f5166d13a7a 293 Gene3D G3DSA:3.40.190.10 89 168 7.7E-10 T 06-07-2017 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 8 215 4.2E-86 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 SUPERFAMILY SSF51366 6 217 1.94E-75 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 137 159 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 202 1.2E-80 T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 PIRSF PIRSF001461 2 226 2.0E-89 T 06-07-2017 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 35 49 - T 06-07-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CDO28_RS00495 0de9ac32f5dcfab5e50470be2dfa7e63 226 Gene3D G3DSA:3.20.20.70 3 224 1.7E-93 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS12545 d9933d03cba402786c2289685d5d5c0c 539 Pfam PF00361 Proton-conducting membrane transporter 135 443 6.4E-35 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS12545 d9933d03cba402786c2289685d5d5c0c 539 TIGRFAM TIGR00944 2a6301s04: multicomponent K+:H+antiporter 7 507 1.4E-216 T 06-07-2017 IPR004775 Na(+)/H(+) antiporter subunit D1 GO:0006812|GO:0015386|GO:0016021 CDO28_RS04990 65d54a4e2c81145a97c0647298a58fa4 282 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 140 205 2.9E-22 T 06-07-2017 IPR017703 YgfZ/GcvT conserved site CDO28_RS04990 65d54a4e2c81145a97c0647298a58fa4 282 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 180 250 1.8E-6 T 06-07-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CDO28_RS04990 65d54a4e2c81145a97c0647298a58fa4 282 SUPERFAMILY SSF103025 3 196 1.07E-47 T 06-07-2017 CDO28_RS04990 65d54a4e2c81145a97c0647298a58fa4 282 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 94 2.0E-8 T 06-07-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal CDO28_RS04990 65d54a4e2c81145a97c0647298a58fa4 282 Gene3D G3DSA:3.30.70.1400 9 93 5.1E-26 T 06-07-2017 CDO28_RS18000 e3af68503fbba11179f4ee8235d95ba7 109 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS18000 e3af68503fbba11179f4ee8235d95ba7 109 SUPERFAMILY SSF52833 4 103 4.36E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS18000 e3af68503fbba11179f4ee8235d95ba7 109 Gene3D G3DSA:3.40.30.10 2 103 2.2E-25 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS18000 e3af68503fbba11179f4ee8235d95ba7 109 Pfam PF00085 Thioredoxin 2 99 1.4E-21 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 CDO28_RS31190 837aa79224870c2d06b9bf9ce13798a8 55 Gene3D G3DSA:3.20.20.70 7 54 3.4E-5 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS06540 91f8d44bdb548bc64c02b8078ea88be0 437 SUPERFAMILY SSF53756 59 403 1.04E-11 T 06-07-2017 CDO28_RS06540 91f8d44bdb548bc64c02b8078ea88be0 437 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 41 214 3.1E-57 T 06-07-2017 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 CDO28_RS22135 0f3bfcbc401105e2dce58f0ae1e208cb 260 Gene3D G3DSA:1.10.3720.10 11 254 6.0E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22135 0f3bfcbc401105e2dce58f0ae1e208cb 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 258 8.3E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22135 0f3bfcbc401105e2dce58f0ae1e208cb 260 SUPERFAMILY SSF161098 14 237 8.5E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 SUPERFAMILY SSF53850 24 482 1.28E-86 T 06-07-2017 CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 PIRSF PIRSF002741 16 482 8.6E-58 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 78 99 - T 06-07-2017 IPR023765 Solute-binding protein family 5, conserved site CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 385 3.2E-60 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 Gene3D G3DSA:3.10.105.10 280 470 1.8E-24 T 06-07-2017 CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 Gene3D G3DSA:3.40.190.10 180 279 1.4E-24 T 06-07-2017 CDO28_RS24515 b1aaf65e7dd32d2ee83f5c3c4806446e 502 Gene3D G3DSA:3.90.76.10 39 179 5.7E-30 T 06-07-2017 CDO28_RS09715 6934a51d72e86927a72bedc278c22eb0 315 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 13 291 3.7E-11 T 06-07-2017 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CDO28_RS02810 130b76cb0e867e40fa3922511b0f188b 328 Pfam PF01618 MotA/TolQ/ExbB proton channel family 160 280 9.5E-33 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 CDO28_RS02810 130b76cb0e867e40fa3922511b0f188b 328 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 87 299 6.0E-99 T 06-07-2017 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 Gene3D G3DSA:3.50.50.60 3 119 1.2E-31 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.1E-38 T 06-07-2017 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 3.1E-38 T 06-07-2017 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 3.1E-38 T 06-07-2017 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 3.1E-38 T 06-07-2017 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 3.1E-38 T 06-07-2017 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 241 262 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.5E-70 T 06-07-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 06-07-2017 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 313 3.2E-119 T 06-07-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 SUPERFAMILY SSF51905 1 313 1.19E-51 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 Gene3D G3DSA:3.50.50.60 120 236 7.4E-34 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 302 4.2E-44 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02345 f3cfd9f26532e3da389f4073ecca6546 324 Gene3D G3DSA:3.50.50.60 237 315 3.5E-9 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS15830 68a5d7a7d1ca61329af744045c7c3fb1 264 SUPERFAMILY SSF53300 24 224 9.46E-17 T 06-07-2017 IPR002035 von Willebrand factor, type A CDO28_RS15830 68a5d7a7d1ca61329af744045c7c3fb1 264 Pfam PF06707 Protein of unknown function (DUF1194) 24 226 1.3E-77 T 06-07-2017 IPR010607 Protein of unknown function DUF1194 CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 Gene3D G3DSA:1.10.10.10 2 87 2.8E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 SUPERFAMILY SSF53850 94 292 2.17E-34 T 06-07-2017 CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 SUPERFAMILY SSF46785 8 114 3.75E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 1.1E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 Pfam PF03466 LysR substrate binding domain 92 290 8.6E-33 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 Gene3D G3DSA:3.40.190.10 95 177 2.1E-30 T 06-07-2017 CDO28_RS05755 e426ee33ead2c9ad17f217d10620c173 302 Gene3D G3DSA:3.40.190.10 178 258 2.2E-16 T 06-07-2017 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Pfam PF04679 ATP dependent DNA ligase C terminal region 243 342 1.8E-15 T 06-07-2017 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Pfam PF01068 ATP dependent DNA ligase domain 44 224 5.1E-25 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Gene3D G3DSA:3.30.1490.70 27 55 3.5E-11 T 06-07-2017 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Gene3D G3DSA:3.30.1490.70 183 224 3.5E-11 T 06-07-2017 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 SUPERFAMILY SSF56091 34 224 1.04E-32 T 06-07-2017 CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Gene3D G3DSA:2.40.50.140 228 348 1.4E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 SUPERFAMILY SSF50249 227 350 4.2E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS30615 73d7f098b57eb3900c455cc9c219202d 355 Gene3D G3DSA:3.30.470.30 56 170 9.2E-20 T 06-07-2017 CDO28_RS04365 4f8747f23fecbca53552a1ae6f5a9e99 176 SMART SM00422 10 79 2.4E-7 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS04365 4f8747f23fecbca53552a1ae6f5a9e99 176 SUPERFAMILY SSF46955 10 78 6.87E-16 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS04365 4f8747f23fecbca53552a1ae6f5a9e99 176 Pfam PF13411 MerR HTH family regulatory protein 10 78 2.8E-25 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS04365 4f8747f23fecbca53552a1ae6f5a9e99 176 Gene3D G3DSA:1.10.1660.10 10 97 4.3E-15 T 06-07-2017 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 SUPERFAMILY SSF53850 88 274 1.21E-17 T 06-07-2017 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 Gene3D G3DSA:3.40.190.10 87 184 2.9E-13 T 06-07-2017 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.2E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 SUPERFAMILY SSF46785 1 84 4.13E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.5E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 Gene3D G3DSA:1.10.10.10 1 84 1.2E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15870 ec22baa01738c07ddf2c92ecad5edeff 281 Pfam PF03466 LysR substrate binding domain 87 264 6.8E-14 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 38 52 2.1E-13 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 16 32 2.1E-13 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 57 70 2.1E-13 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 178 190 2.1E-13 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 TIGRFAM TIGR00571 dam: DNA adenine methylase 11 271 8.3E-65 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 Gene3D G3DSA:3.40.50.150 7 67 1.0E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 Gene3D G3DSA:3.40.50.150 163 271 1.0E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 SUPERFAMILY SSF53335 12 270 1.61E-59 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 PIRSF PIRSF000398 7 272 8.5E-58 T 06-07-2017 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 Gene3D G3DSA:1.10.1020.10 68 149 2.4E-25 T 06-07-2017 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 181 187 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS02050 acf45aaa878e15ab210935dc1c45b3b2 272 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 16 251 9.5E-44 T 06-07-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDO28_RS18215 6e80ec4f885210bd36156a47b83f7007 454 Gene3D G3DSA:3.40.710.10 25 340 2.4E-71 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS18215 6e80ec4f885210bd36156a47b83f7007 454 SUPERFAMILY SSF56601 19 339 6.58E-69 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS18215 6e80ec4f885210bd36156a47b83f7007 454 Pfam PF00144 Beta-lactamase 28 333 2.4E-57 T 06-07-2017 IPR001466 Beta-lactamase-related CDO28_RS27390 991cde66c0718d9571e5ea4d25c2add0 330 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 38 299 9.5E-31 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS27390 991cde66c0718d9571e5ea4d25c2add0 330 Pfam PF03631 Virulence factor BrkB 47 301 3.4E-56 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS27390 991cde66c0718d9571e5ea4d25c2add0 330 PIRSF PIRSF035875 20 320 2.1E-65 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS08965 dab101b42105438206e87c7116ef5168 329 Gene3D G3DSA:1.20.58.340 253 329 3.2E-28 T 06-07-2017 CDO28_RS08965 dab101b42105438206e87c7116ef5168 329 SUPERFAMILY SSF144083 264 326 8.76E-21 T 06-07-2017 CDO28_RS08965 dab101b42105438206e87c7116ef5168 329 Pfam PF01544 CorA-like Mg2+ transporter protein 27 325 4.3E-50 T 06-07-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDO28_RS08965 dab101b42105438206e87c7116ef5168 329 SUPERFAMILY SSF143865 1 268 7.45E-35 T 06-07-2017 CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 SUPERFAMILY SSF52540 8 224 4.4E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 Gene3D G3DSA:3.40.50.300 8 228 7.3E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 SUPERFAMILY SSF52540 264 481 6.8E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 Gene3D G3DSA:3.40.50.300 262 485 5.1E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 ProSitePatterns PS00211 ABC transporters family signature. 395 409 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 Pfam PF00005 ABC transporter 21 167 4.9E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 Pfam PF00005 ABC transporter 268 422 5.6E-18 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 SMART SM00382 30 215 3.9E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28510 4fba93f2f633dbbfa823f40688fdd793 504 SMART SM00382 276 462 0.0075 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Gene3D G3DSA:2.30.42.10 105 180 6.6E-29 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Gene3D G3DSA:3.90.226.10 181 366 6.8E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Gene3D G3DSA:3.90.226.10 402 426 6.8E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 SMART SM00228 99 170 1.2E-16 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 SUPERFAMILY SSF50156 69 191 1.48E-24 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 SMART SM00245 172 364 7.2E-81 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 SUPERFAMILY SSF52096 32 117 2.98E-84 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 SUPERFAMILY SSF52096 190 377 2.98E-84 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 52 368 6.5E-102 T 06-07-2017 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Pfam PF03572 Peptidase family S41 196 363 2.5E-56 T 06-07-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Gene3D G3DSA:3.30.750.44 48 104 3.9E-9 T 06-07-2017 CDO28_RS11520 db39287662de0f227ce4af8b064d7f10 440 Pfam PF13180 PDZ domain 99 178 3.4E-13 T 06-07-2017 IPR001478 PDZ domain GO:0005515 CDO28_RS24790 cfcf6041a35b07b23a67df742cffc5e1 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.35 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS24790 cfcf6041a35b07b23a67df742cffc5e1 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 95 3.2E-23 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS30715 cb90e9955191b8735775ba7ddea0ea7a 325 SUPERFAMILY SSF53850 112 278 8.09E-11 T 06-07-2017 CDO28_RS30715 cb90e9955191b8735775ba7ddea0ea7a 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 320 4.8E-72 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS30715 cb90e9955191b8735775ba7ddea0ea7a 325 PIRSF PIRSF017082 1 324 1.9E-70 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS04185 69a49ab7348538e60c8b46fda27a144d 729 SUPERFAMILY SSF75011 52 395 1.31E-16 T 06-07-2017 CDO28_RS04185 69a49ab7348538e60c8b46fda27a144d 729 Pfam PF13449 Esterase-like activity of phytase 446 709 8.7E-46 T 06-07-2017 IPR027372 Phytase-like domain CDO28_RS04185 69a49ab7348538e60c8b46fda27a144d 729 Gene3D G3DSA:2.130.10.10 48 394 1.9E-17 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS27230 a6cfeb122871823ea312b91d5758d5bb 390 Gene3D G3DSA:3.20.20.80 50 358 8.4E-10 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS27230 a6cfeb122871823ea312b91d5758d5bb 390 SUPERFAMILY SSF51445 50 365 1.1E-18 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS14840 671008117b8ace66d9bb8078446be158 139 Pfam PF07007 Protein of unknown function (DUF1311) 27 130 5.4E-25 T 06-07-2017 IPR009739 Protein of unknown function DUF1311 CDO28_RS23960 663e1321556bc9a266788f7ebd2efbe6 1261 Gene3D G3DSA:2.40.160.60 787 916 8.5E-4 T 06-07-2017 CDO28_RS23960 663e1321556bc9a266788f7ebd2efbe6 1261 SUPERFAMILY SSF56925 784 883 5.49E-5 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 25 46 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 154 173 1.2E-61 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 PIRSF PIRSF002764 1 219 3.6E-65 T 06-07-2017 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 Pfam PF03379 CcmB protein 2 216 2.9E-83 T 06-07-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CDO28_RS11180 900f5e4f54f49392d09f97e0a4000792 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 4 215 7.2E-86 T 06-07-2017 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CDO28_RS23610 6043cb07c52c826bf080357d5497131c 342 Gene3D G3DSA:3.40.50.2300 27 154 7.3E-21 T 06-07-2017 CDO28_RS23610 6043cb07c52c826bf080357d5497131c 342 Pfam PF13407 Periplasmic binding protein domain 35 293 9.7E-41 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS23610 6043cb07c52c826bf080357d5497131c 342 SUPERFAMILY SSF53822 32 301 1.62E-45 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS23610 6043cb07c52c826bf080357d5497131c 342 Gene3D G3DSA:3.40.50.2300 155 303 2.7E-24 T 06-07-2017 CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 93 107 4.0E-5 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 180 4.0E-5 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 127 145 4.0E-5 T 06-07-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 Gene3D G3DSA:3.90.226.10 254 510 4.0E-93 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 Pfam PF01039 Carboxyl transferase domain 27 508 5.0E-186 T 06-07-2017 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 SUPERFAMILY SSF52096 3 249 3.17E-79 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 Gene3D G3DSA:3.90.226.10 4 253 1.9E-83 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS30000 4502d73ae6dfff0ad4600f95e308909a 510 SUPERFAMILY SSF52096 223 510 8.3E-84 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Gene3D G3DSA:3.40.50.300 8 295 2.8E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 SUPERFAMILY SSF52540 7 632 8.75E-124 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Pfam PF00580 UvrD/REP helicase N-terminal domain 30 293 4.2E-52 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Pfam PF13361 UvrD-like helicase C-terminal domain 561 622 9.9E-19 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Pfam PF13361 UvrD-like helicase C-terminal domain 301 448 3.1E-21 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Gene3D G3DSA:3.40.50.300 561 631 1.9E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Gene3D G3DSA:3.40.50.300 304 411 1.9E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20425 1be01f0ccb112eeb0f8435b9a1022e2c 689 Gene3D G3DSA:1.10.486.10 412 540 7.3E-10 T 06-07-2017 CDO28_RS21325 08b670da06599d1b67d8da3964899862 316 Pfam PF13407 Periplasmic binding protein domain 35 280 6.9E-39 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS21325 08b670da06599d1b67d8da3964899862 316 SUPERFAMILY SSF53822 34 286 2.54E-47 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS21325 08b670da06599d1b67d8da3964899862 316 Gene3D G3DSA:3.40.50.2300 148 295 5.3E-21 T 06-07-2017 CDO28_RS21325 08b670da06599d1b67d8da3964899862 316 Gene3D G3DSA:3.40.50.2300 35 147 4.3E-27 T 06-07-2017 CDO28_RS12570 8378e201bd82be3629e5d7882fa751ce 336 SUPERFAMILY SSF56281 4 317 1.49E-65 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS12570 8378e201bd82be3629e5d7882fa751ce 336 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 7 334 1.9E-146 T 06-07-2017 IPR026360 Putative exonuclease, DNA ligase-associated CDO28_RS12570 8378e201bd82be3629e5d7882fa751ce 336 Pfam PF00753 Metallo-beta-lactamase superfamily 26 159 7.8E-5 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS12570 8378e201bd82be3629e5d7882fa751ce 336 Gene3D G3DSA:3.60.15.10 28 187 1.1E-19 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS04720 5ffd9b783431ec6d4c20264e80872657 149 SUPERFAMILY SSF102400 1 139 1.7E-43 T 06-07-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 CDO28_RS04720 5ffd9b783431ec6d4c20264e80872657 149 Gene3D G3DSA:3.40.50.10110 1 140 2.5E-38 T 06-07-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 CDO28_RS04720 5ffd9b783431ec6d4c20264e80872657 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 1.6E-34 T 06-07-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 CDO28_RS32790 dd94525505848ca2132ea4551443791c 112 Gene3D G3DSA:3.30.750.24 37 87 5.3E-6 T 06-07-2017 IPR002645 STAS domain CDO28_RS32790 dd94525505848ca2132ea4551443791c 112 SUPERFAMILY SSF52091 34 104 1.49E-7 T 06-07-2017 IPR002645 STAS domain CDO28_RS16230 1506bd8a8d77a869b70addf16fb69d52 112 Pfam PF04273 Putative phosphatase (DUF442) 2 105 1.2E-31 T 06-07-2017 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDO28_RS16230 1506bd8a8d77a869b70addf16fb69d52 112 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 104 6.0E-27 T 06-07-2017 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDO28_RS16230 1506bd8a8d77a869b70addf16fb69d52 112 SUPERFAMILY SSF52799 2 103 1.24E-8 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS16230 1506bd8a8d77a869b70addf16fb69d52 112 Gene3D G3DSA:3.90.190.10 1 110 9.3E-38 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 188 6.9E-43 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 Gene3D G3DSA:2.40.100.10 22 188 3.8E-44 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 SUPERFAMILY SSF50891 23 187 5.7E-45 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 06-07-2017 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 2.1E-12 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 2.1E-12 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 2.1E-12 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS02260 23e59e4e7fecce03fa7f2a8389d46ed7 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 2.1E-12 T 06-07-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PIRSF PIRSF000350 2 452 1.1E-72 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 341 449 1.6E-31 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 2.0E-29 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 2.0E-29 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.0E-29 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 2.0E-29 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 2.0E-29 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 06-07-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 Gene3D G3DSA:3.30.390.30 341 454 3.3E-39 T 06-07-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 337 358 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 3.5E-63 T 06-07-2017 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 Gene3D G3DSA:3.50.50.60 137 325 1.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 SUPERFAMILY SSF55424 337 455 4.98E-33 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 321 5.0E-57 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 4 450 3.1E-237 T 06-07-2017 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 SUPERFAMILY SSF51905 4 366 3.4E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS18830 7b4f86ecec4a22a68662cbae22b60968 463 Gene3D G3DSA:3.50.50.60 4 136 1.3E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Gene3D G3DSA:3.50.50.60 482 638 2.3E-26 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 10 339 6.2E-68 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 SUPERFAMILY SSF51905 537 670 5.37E-14 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 SUPERFAMILY SSF51905 390 444 5.37E-14 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Pfam PF13450 NAD(P)-binding Rossmann-like domain 392 434 1.7E-5 T 06-07-2017 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Gene3D G3DSA:3.20.20.70 6 368 2.4E-88 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Gene3D G3DSA:3.50.50.60 404 481 1.1E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Gene3D G3DSA:3.50.50.60 644 677 1.1E-11 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 SUPERFAMILY SSF51971 349 490 1.81E-21 T 06-07-2017 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 SUPERFAMILY SSF51395 5 370 2.9E-86 T 06-07-2017 CDO28_RS21440 cd392bd8192310c4f7a73783e9ead2ae 697 Gene3D G3DSA:3.40.50.720 369 403 2.4E-4 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09910 8565aee522ce177d6c4046a4f227a3a7 204 Pfam PF07811 TadE-like protein 28 70 8.8E-6 T 06-07-2017 IPR012495 TadE-like CDO28_RS14300 957a3ffc2fcc58bd7da52f3540648f4c 278 Pfam PF00005 ABC transporter 34 174 2.1E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14300 957a3ffc2fcc58bd7da52f3540648f4c 278 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14300 957a3ffc2fcc58bd7da52f3540648f4c 278 SUPERFAMILY SSF52540 22 242 3.33E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14300 957a3ffc2fcc58bd7da52f3540648f4c 278 Gene3D G3DSA:3.40.50.300 5 220 2.3E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14300 957a3ffc2fcc58bd7da52f3540648f4c 278 SMART SM00382 43 223 1.9E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32740 e8b9d01b9b1cc7d639bf0f4299fccdde 324 PIRSF PIRSF006470 1 322 6.9E-72 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS32740 e8b9d01b9b1cc7d639bf0f4299fccdde 324 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 285 2.3E-61 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS32740 e8b9d01b9b1cc7d639bf0f4299fccdde 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 306 6.8E-73 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS00620 f08ca1d65d803dc14d149d741d3e4d73 126 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 29 125 1.3E-46 T 06-07-2017 IPR014291 SUF system FeS cluster assembly associated CDO28_RS00620 f08ca1d65d803dc14d149d741d3e4d73 126 Pfam PF01883 Domain of unknown function DUF59 31 103 7.3E-22 T 06-07-2017 IPR002744 Domain of unknown function DUF59 CDO28_RS00620 f08ca1d65d803dc14d149d741d3e4d73 126 SUPERFAMILY SSF117916 30 124 4.25E-32 T 06-07-2017 CDO28_RS05430 636a4989a14d0e789049bff41fc72dce 150 SUPERFAMILY SSF82093 29 136 1.96E-35 T 06-07-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 CDO28_RS05430 636a4989a14d0e789049bff41fc72dce 150 Gene3D G3DSA:2.40.50.140 25 124 3.0E-32 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS05430 636a4989a14d0e789049bff41fc72dce 150 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 31.603 T 06-07-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 CDO28_RS05430 636a4989a14d0e789049bff41fc72dce 150 Pfam PF03100 CcmE 3 130 6.7E-42 T 06-07-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 CDO28_RS16670 277f2ddd69511101d2d9d5ee513ec2a3 362 Pfam PF12221 Bacterial membrane protein N terminal 18 59 8.0E-11 T 06-07-2017 IPR020980 Menbrane protein HflK, N-terminal CDO28_RS16670 277f2ddd69511101d2d9d5ee513ec2a3 362 Pfam PF01145 SPFH domain / Band 7 family 83 261 6.3E-31 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS16670 277f2ddd69511101d2d9d5ee513ec2a3 362 SUPERFAMILY SSF117892 112 253 6.93E-25 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS16670 277f2ddd69511101d2d9d5ee513ec2a3 362 TIGRFAM TIGR01933 hflK: HflK protein 81 350 8.1E-86 T 06-07-2017 IPR010201 HflK GO:0016021 CDO28_RS16670 277f2ddd69511101d2d9d5ee513ec2a3 362 SMART SM00244 79 247 2.1E-29 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS34625 96303add0910e981c8e42faac97ae161 230 Pfam PF01939 Protein of unknown function DUF91 134 200 2.5E-8 T 06-07-2017 IPR002793 Endonuclease NucS CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Pfam PF17092 Penicillin-binding protein OB-like domain 322 438 3.2E-21 T 06-07-2017 IPR031376 Penicillin-binding protein, OB-like domain CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 SUPERFAMILY SSF53955 43 257 6.19E-71 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Pfam PF00905 Penicillin binding protein transpeptidase domain 440 731 4.5E-38 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 735 3.3E-186 T 06-07-2017 CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 SUPERFAMILY SSF56601 267 319 4.88E-134 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 SUPERFAMILY SSF56601 215 237 4.88E-134 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 SUPERFAMILY SSF56601 435 786 4.88E-134 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Pfam PF00912 Transglycosylase 56 233 2.9E-58 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Gene3D G3DSA:3.40.710.10 236 319 5.4E-141 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Gene3D G3DSA:3.40.710.10 433 783 5.4E-141 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS03790 d27a9cc8d6d68804e887212d49202c5a 817 Gene3D G3DSA:1.10.3810.10 57 235 6.9E-68 T 06-07-2017 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 52 247 3.1E-44 T 06-07-2017 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 SUPERFAMILY SSF46626 13 21 4.63E-17 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 SUPERFAMILY SSF46626 57 163 4.63E-17 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 SUPERFAMILY SSF46626 378 496 2.91E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 402 491 3.2E-9 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 275 362 6.4E-8 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 SUPERFAMILY SSF46626 265 365 4.87E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Gene3D G3DSA:1.10.760.10 394 496 5.2E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Gene3D G3DSA:1.10.760.10 265 364 1.6E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Gene3D G3DSA:1.10.760.10 48 164 3.8E-19 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25855 0ac387378c68904947fd03f4dff30da1 554 Gene3D G3DSA:1.10.760.10 219 245 3.8E-19 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 SUPERFAMILY SSF51735 3 251 4.38E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 Gene3D G3DSA:3.40.50.720 1 251 3.4E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 192 0.0017 T 06-07-2017 CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.3E-25 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 Pfam PF00106 short chain dehydrogenase 7 203 3.9E-46 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24550 dc75be992fdd7d87a158d6012ad83487 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 264 9.7E-41 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 Gene3D G3DSA:3.40.190.10 119 220 1.5E-7 T 06-07-2017 CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 SMART SM00062 40 268 1.8E-28 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 SUPERFAMILY SSF53850 42 265 5.69E-41 T 06-07-2017 CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 Gene3D G3DSA:3.40.190.10 227 265 4.2E-22 T 06-07-2017 CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 Gene3D G3DSA:3.40.190.10 39 118 4.2E-22 T 06-07-2017 CDO28_RS32690 8393df9d231021a70468d6ced9219fa9 283 TIGRFAM TIGR02995 ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB 7 280 3.3E-139 T 06-07-2017 IPR014337 Ectoine/Hydroxyectoine-binding protein EhuB GO:0005886|GO:0033294|GO:0051470|GO:0051471 CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 Gene3D G3DSA:3.40.50.1360 67 325 4.0E-69 T 06-07-2017 CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 Pfam PF04198 Putative sugar-binding domain 70 325 9.5E-57 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 SUPERFAMILY SSF46689 24 72 7.7E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 SUPERFAMILY SSF100950 70 327 2.51E-61 T 06-07-2017 CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 Gene3D G3DSA:1.10.10.10 23 59 1.7E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33010 3dc74b89edb95bfa086db96b983522ec 334 Pfam PF08281 Sigma-70, region 4 23 59 2.0E-9 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS14525 9718715e570ad59cecc967916bc3dc7a 287 Gene3D G3DSA:3.20.20.150 20 166 6.3E-10 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS14525 9718715e570ad59cecc967916bc3dc7a 287 SUPERFAMILY SSF51658 24 165 1.2E-11 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 514 5.7E-171 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PIRSF PIRSF002869 1 518 6.0E-140 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 33 52 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 360 379 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 158 179 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 52 68 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 412 429 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 134 158 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 PRINTS PR01806 Virulence factor MviN signature 262 288 3.0E-73 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS08555 cb4d5b0374d6922946ef76265e970d07 535 Pfam PF03023 MviN-like protein 28 466 4.4E-113 T 06-07-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ CDO28_RS09190 bba62eb78d30c77ed239172c6466c1c0 212 Pfam PF06055 Exopolysaccharide synthesis, ExoD 12 193 2.4E-54 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD CDO28_RS09190 bba62eb78d30c77ed239172c6466c1c0 212 PIRSF PIRSF033239 1 208 3.4E-68 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD CDO28_RS09095 0e29598e6837d2324e473b2c02742516 224 SUPERFAMILY SSF55166 21 172 3.3E-12 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS09095 0e29598e6837d2324e473b2c02742516 224 Gene3D G3DSA:3.30.1380.10 21 83 1.5E-5 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS15110 636bd7bd2ccd5a2ea47805b90ff39f58 124 Pfam PF04241 Protein of unknown function (DUF423) 38 100 3.2E-7 T 06-07-2017 IPR006696 Protein of unknown function DUF423 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 Pfam PF00155 Aminotransferase class I and II 25 347 1.3E-56 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 351 56.042 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 Gene3D G3DSA:3.90.1150.10 254 351 6.6E-26 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 350 2.0E-85 T 06-07-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 SUPERFAMILY SSF53383 5 351 1.87E-77 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS10995 e44673a78b0e81df464b7a1cd615f8b1 351 Gene3D G3DSA:3.40.640.10 38 253 2.2E-60 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 SUPERFAMILY SSF90123 20 335 1.96E-75 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 Gene3D G3DSA:3.40.50.300 348 580 1.7E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 Gene3D G3DSA:1.20.1560.10 20 333 2.2E-78 T 06-07-2017 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 Pfam PF00005 ABC transporter 367 516 7.0E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 Pfam PF00664 ABC transporter transmembrane region 34 297 2.6E-52 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 13 587 1.4E-283 T 06-07-2017 IPR011918 ABC transporter, ATP-binding/permease protein CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 SMART SM00382 376 562 9.9E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13240 cbed36ba19048d60fa2fbdb55965b3c9 604 SUPERFAMILY SSF52540 339 587 2.88E-90 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 Gene3D G3DSA:3.40.50.1970 2 157 7.0E-36 T 06-07-2017 CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 149 177 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 Gene3D G3DSA:1.20.1090.10 159 362 4.1E-58 T 06-07-2017 CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 346 2.0E-61 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 PIRSF PIRSF000112 1 361 1.3E-84 T 06-07-2017 CDO28_RS14415 47c75e36c91cfd376214e066423ac017 364 SUPERFAMILY SSF56796 4 357 1.96E-76 T 06-07-2017 CDO28_RS10905 bdc9573dac9717f4b7895def262406ab 510 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS10905 bdc9573dac9717f4b7895def262406ab 510 Gene3D G3DSA:3.40.309.10 278 466 3.3E-51 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS10905 bdc9573dac9717f4b7895def262406ab 510 SUPERFAMILY SSF53720 29 496 5.89E-130 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS10905 bdc9573dac9717f4b7895def262406ab 510 Gene3D G3DSA:3.40.605.10 29 277 8.2E-71 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS10905 bdc9573dac9717f4b7895def262406ab 510 Pfam PF00171 Aldehyde dehydrogenase family 32 488 3.8E-127 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 Pfam PF03466 LysR substrate binding domain 100 297 1.8E-25 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 Gene3D G3DSA:3.40.190.10 207 266 1.8E-8 T 06-07-2017 CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 SUPERFAMILY SSF46785 13 121 2.56E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 SUPERFAMILY SSF53850 101 299 1.38E-24 T 06-07-2017 CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 3.6E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 Gene3D G3DSA:3.40.190.10 95 206 9.1E-13 T 06-07-2017 CDO28_RS24380 ee956a8091e21e4540c17087632b34f4 304 Gene3D G3DSA:1.10.10.10 13 84 5.6E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 117 125 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 36 43 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 100 110 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 64 74 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 81 97 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 PRINTS PR00604 Class IA and IB cytochrome C signature 48 63 2.4E-23 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 Pfam PF00034 Cytochrome c 27 125 2.5E-9 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 Gene3D G3DSA:1.10.760.10 23 126 5.1E-41 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS14600 989f5b6faf6dfd6ec731f376b0186016 128 SUPERFAMILY SSF46626 23 127 1.21E-36 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 104 453 1.2E-70 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 PIRSF PIRSF002741 22 529 2.5E-66 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 23 52 1.0E-4 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 Gene3D G3DSA:3.40.190.10 212 312 2.3E-26 T 06-07-2017 CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 SUPERFAMILY SSF53850 63 521 2.17E-108 T 06-07-2017 CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 Gene3D G3DSA:3.90.76.10 72 211 3.9E-32 T 06-07-2017 CDO28_RS27145 6b3901bb40f616affe99bd24085236fe 535 Gene3D G3DSA:3.10.105.10 313 497 2.8E-32 T 06-07-2017 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Gene3D G3DSA:2.40.30.10 20 108 1.2E-21 T 06-07-2017 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Pfam PF00175 Oxidoreductase NAD-binding domain 130 236 1.4E-14 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 288 357 3.6E-13 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 SUPERFAMILY SSF54292 245 363 3.28E-28 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 314 322 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Gene3D G3DSA:3.40.50.80 109 247 4.2E-36 T 06-07-2017 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Pfam PF00970 Oxidoreductase FAD-binding domain 31 119 2.5E-11 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 PRINTS PR00406 Cytochrome B5 reductase signature 129 148 8.2E-11 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 PRINTS PR00406 Cytochrome B5 reductase signature 166 177 8.2E-11 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 PRINTS PR00406 Cytochrome B5 reductase signature 222 230 8.2E-11 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 PRINTS PR00406 Cytochrome B5 reductase signature 106 120 8.2E-11 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 PRINTS PR00406 Cytochrome B5 reductase signature 69 76 8.2E-11 T 06-07-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 Gene3D G3DSA:3.10.20.30 248 363 2.4E-31 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 SUPERFAMILY SSF63380 18 118 4.84E-23 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS06230 727cb16958bed6932fff123bd122adb8 364 SUPERFAMILY SSF52343 110 252 1.31E-36 T 06-07-2017 CDO28_RS17250 edd31aca308c827792fd5facec1b03f2 113 SUPERFAMILY SSF51316 1 103 4.81E-21 T 06-07-2017 IPR011057 Mss4-like CDO28_RS17250 edd31aca308c827792fd5facec1b03f2 113 Gene3D G3DSA:3.90.1590.10 2 88 7.0E-14 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS21485 b56e7cfeea464015f756c9af2ee1cde6 195 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 188 1.2E-43 T 06-07-2017 IPR006286 Peptidase C56, PfpI CDO28_RS21485 b56e7cfeea464015f756c9af2ee1cde6 195 Gene3D G3DSA:3.40.50.880 1 190 1.1E-40 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS21485 b56e7cfeea464015f756c9af2ee1cde6 195 SUPERFAMILY SSF52317 3 188 5.62E-45 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS21485 b56e7cfeea464015f756c9af2ee1cde6 195 Pfam PF01965 DJ-1/PfpI family 4 185 1.3E-36 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS25615 9a41e0142e8c599b5866354fc1589a1b 461 Pfam PF07995 Glucose / Sorbosone dehydrogenase 267 337 3.2E-9 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS25615 9a41e0142e8c599b5866354fc1589a1b 461 SUPERFAMILY SSF50952 90 122 6.67E-38 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS25615 9a41e0142e8c599b5866354fc1589a1b 461 SUPERFAMILY SSF50952 150 456 6.67E-38 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS25615 9a41e0142e8c599b5866354fc1589a1b 461 Gene3D G3DSA:2.120.10.30 74 457 8.6E-56 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 189 1.3E-8 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 Gene3D G3DSA:3.40.30.10 1 85 3.7E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 73 9.4E-17 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 SUPERFAMILY SSF52833 1 84 1.59E-24 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 Gene3D G3DSA:1.20.1050.10 86 196 1.0E-28 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS30600 6a07a5e2f4e4d062409188ea0438b1a9 203 SUPERFAMILY SSF47616 85 195 4.59E-27 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS21420 c93f961d90ee31f98e4c05ca1697e2e4 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 313 1.4E-82 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS21420 c93f961d90ee31f98e4c05ca1697e2e4 334 PIRSF PIRSF006470 1 331 6.5E-101 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS21420 c93f961d90ee31f98e4c05ca1697e2e4 334 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 288 6.3E-73 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS19885 09df5617d080be8f3cd3dbf50c6edcc2 107 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 96 2.7E-15 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS05535 ebb32e77078d175d7b2b7010affac3d0 140 Pfam PF02657 Fe-S metabolism associated domain 8 132 1.6E-45 T 06-07-2017 IPR003808 Fe-S metabolism associated domain, SufE-like CDO28_RS05535 ebb32e77078d175d7b2b7010affac3d0 140 Gene3D G3DSA:3.90.1010.10 2 135 9.4E-52 T 06-07-2017 CDO28_RS05535 ebb32e77078d175d7b2b7010affac3d0 140 SUPERFAMILY SSF82649 2 135 4.66E-45 T 06-07-2017 CDO28_RS16515 13e4bab8e2f6ffc0a1cd8bab51513d53 199 SUPERFAMILY SSF52833 38 197 7.02E-47 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16515 13e4bab8e2f6ffc0a1cd8bab51513d53 199 Gene3D G3DSA:3.40.30.10 11 197 3.3E-55 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16515 13e4bab8e2f6ffc0a1cd8bab51513d53 199 Pfam PF02630 SCO1/SenC 29 177 1.2E-40 T 06-07-2017 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 303 1.9E-18 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 Pfam PF00005 ABC transporter 32 187 1.4E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 322 2.9E-23 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 Gene3D G3DSA:3.40.50.300 10 261 4.2E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 SUPERFAMILY SSF52540 11 258 3.55E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22670 88e00ea16722140e1a493419670bfd94 336 SMART SM00382 40 245 5.8E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20130 1fb6524ef171258770583e742d994537 158 Gene3D G3DSA:3.10.129.10 15 154 3.0E-18 T 06-07-2017 IPR029069 HotDog domain CDO28_RS20130 1fb6524ef171258770583e742d994537 158 SUPERFAMILY SSF54637 17 151 3.02E-19 T 06-07-2017 IPR029069 HotDog domain CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 Pfam PF00455 DeoR C terminal sensor domain 77 234 6.0E-42 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 SMART SM01134 75 236 3.0E-54 T 06-07-2017 CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 SUPERFAMILY SSF100950 78 234 2.41E-27 T 06-07-2017 CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 SMART SM00420 8 57 0.0028 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 Gene3D G3DSA:3.40.50.1360 79 216 1.8E-12 T 06-07-2017 CDO28_RS26760 4e466626830940ec37eef8b2d817eb54 264 Pfam PF08220 DeoR-like helix-turn-helix domain 8 42 2.2E-7 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 Gene3D G3DSA:3.40.50.720 4 167 4.5E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 198 420 3.5E-61 T 06-07-2017 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 SUPERFAMILY SSF51735 5 171 4.6E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 194 206 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 168 179 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 4.0E-38 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 Gene3D G3DSA:3.90.110.10 171 453 1.9E-81 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 SUPERFAMILY SSF56327 174 450 3.18E-78 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 142 173 - T 06-07-2017 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CDO28_RS30515 5db5ab02269f0091878f820ab6ae7cde 457 Pfam PF02056 Family 4 glycosyl hydrolase 6 188 1.2E-66 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS12745 5de62d7e00b0e5921e916204094d0501 211 Pfam PF01810 LysE type translocator 15 205 9.9E-32 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS12745 5de62d7e00b0e5921e916204094d0501 211 PIRSF PIRSF006324 1 208 9.1E-53 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 PIRSF PIRSF039085 1 254 3.2E-110 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 SUPERFAMILY SSF52540 4 247 2.49E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 SMART SM00382 29 252 1.7E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 Pfam PF00005 ABC transporter 20 178 1.6E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26340 7672db6bd0d072f0e7bda4087f56ddda 255 Gene3D G3DSA:3.40.50.300 3 250 8.0E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26200 7bb86e5095afac73c8ec14cf2ae31143 153 Pfam PF01575 MaoC like domain 15 111 1.2E-20 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS26200 7bb86e5095afac73c8ec14cf2ae31143 153 Gene3D G3DSA:3.10.129.10 4 148 9.7E-42 T 06-07-2017 IPR029069 HotDog domain CDO28_RS26200 7bb86e5095afac73c8ec14cf2ae31143 153 SUPERFAMILY SSF54637 5 148 1.55E-39 T 06-07-2017 IPR029069 HotDog domain CDO28_RS30030 bf944a23f9700951714006643a127470 368 PIRSF PIRSF007313 1 361 2.4E-157 T 06-07-2017 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 CDO28_RS30030 bf944a23f9700951714006643a127470 368 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 3.3E-159 T 06-07-2017 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 CDO28_RS23745 636c18164fb00124ecd0e1864f405980 157 Pfam PF07883 Cupin domain 66 127 5.8E-13 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS23745 636c18164fb00124ecd0e1864f405980 157 SUPERFAMILY SSF51182 36 157 1.69E-28 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS23745 636c18164fb00124ecd0e1864f405980 157 Gene3D G3DSA:2.60.120.10 40 154 3.3E-28 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS28615 d767e6a7aa41c555395a1085ea89891d 170 Hamap MF_00616 Ureidoglycolate lyase [allA]. 3 163 43.455 T 06-07-2017 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS28615 d767e6a7aa41c555395a1085ea89891d 170 SUPERFAMILY SSF51182 4 161 1.51E-54 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS28615 d767e6a7aa41c555395a1085ea89891d 170 PIRSF PIRSF017306 3 158 1.9E-35 T 06-07-2017 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS28615 d767e6a7aa41c555395a1085ea89891d 170 Pfam PF04115 Ureidoglycolate lyase 3 161 3.5E-50 T 06-07-2017 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS28615 d767e6a7aa41c555395a1085ea89891d 170 Gene3D G3DSA:2.60.120.480 3 161 1.4E-53 T 06-07-2017 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS09570 cf90352f4b4130cc5e6fea1d663f67de 453 SUPERFAMILY SSF75304 5 449 4.84E-114 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS09570 cf90352f4b4130cc5e6fea1d663f67de 453 ProSitePatterns PS00571 Amidases signature. 153 184 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CDO28_RS09570 cf90352f4b4130cc5e6fea1d663f67de 453 Pfam PF01425 Amidase 24 439 2.1E-81 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS09570 cf90352f4b4130cc5e6fea1d663f67de 453 Gene3D G3DSA:3.90.1300.10 3 449 1.1E-115 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 230 247 7.6E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 32 49 7.6E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 163 185 7.6E-5 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 Gene3D G3DSA:2.120.10.30 25 301 1.9E-65 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 SUPERFAMILY SSF63829 10 301 6.1E-61 T 06-07-2017 CDO28_RS23605 11a9e21a00707aec81b2ae6e85705f03 302 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 31 286 9.2E-52 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 SUPERFAMILY SSF55347 154 316 7.17E-71 T 06-07-2017 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 1.3E-129 T 06-07-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 154 7.1E-57 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 315 5.3E-66 T 06-07-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 Gene3D G3DSA:3.40.50.720 1 162 3.9E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 SMART SM00846 3 154 3.1E-94 T 06-07-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 1.6E-38 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 1.6E-38 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 1.6E-38 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.6E-38 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 1.6E-38 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 PIRSF PIRSF000149 1 336 1.6E-138 T 06-07-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 Gene3D G3DSA:3.30.360.10 163 317 6.9E-76 T 06-07-2017 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 06-07-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13295 33b7a8fd15e8248adc5a778b49fa0873 336 SUPERFAMILY SSF51735 1 183 1.29E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 4.1E-24 T 06-07-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 Gene3D G3DSA:3.30.230.70 7 238 3.6E-30 T 06-07-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 Hamap MF_00564 Ribonuclease PH [rph]. 1 238 48.376 T 06-07-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 SUPERFAMILY SSF54211 1 182 4.15E-46 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 06-07-2017 IPR018336 Ribonuclease PH, conserved site CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 SUPERFAMILY SSF55666 156 237 1.15E-23 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 Pfam PF03725 3' exoribonuclease family, domain 2 160 224 9.3E-10 T 06-07-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDO28_RS08665 3d5ad88bb1d8e3f5c351ef93595848bb 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 237 2.6E-120 T 06-07-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 CDO28_RS08310 2555a32787737a973b641788c3b535cc 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.049 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS08310 2555a32787737a973b641788c3b535cc 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 06-07-2017 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS08310 2555a32787737a973b641788c3b535cc 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.3E-23 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS08310 2555a32787737a973b641788c3b535cc 44 Pfam PF00468 Ribosomal protein L34 1 44 1.3E-23 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS08310 2555a32787737a973b641788c3b535cc 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 2.0E-15 T 06-07-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03940 fec2b99f30459184e28dd4db7b548492 203 SMART SM01207 18 192 3.7E-85 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CDO28_RS03940 fec2b99f30459184e28dd4db7b548492 203 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 15 200 20.525 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CDO28_RS03940 fec2b99f30459184e28dd4db7b548492 203 Pfam PF02660 Glycerol-3-phosphate acyltransferase 19 191 8.3E-50 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CDO28_RS03940 fec2b99f30459184e28dd4db7b548492 203 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 15 201 3.1E-52 T 06-07-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 SUPERFAMILY SSF53474 53 343 4.41E-53 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 Gene3D G3DSA:3.40.50.1820 55 343 6.2E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 Pfam PF00561 alpha/beta hydrolase fold 76 207 1.7E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 PRINTS PR00412 Epoxide hydrolase signature 101 116 3.9E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 PRINTS PR00412 Epoxide hydrolase signature 149 162 3.9E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 PRINTS PR00412 Epoxide hydrolase signature 163 176 3.9E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 PRINTS PR00412 Epoxide hydrolase signature 81 99 3.9E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19615 14daefaa9d14c7af22161e458a3dbd9e 349 PRINTS PR00412 Epoxide hydrolase signature 322 344 3.9E-12 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 SUPERFAMILY SSF55681 4 245 3.98E-109 T 06-07-2017 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 706 3.9E-16 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 887 200.291 T 06-07-2017 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 SUPERFAMILY SSF50447 453 552 1.53E-19 T 06-07-2017 IPR009000 Translation protein, beta-barrel domain CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Gene3D G3DSA:3.30.980.10 562 636 3.4E-4 T 06-07-2017 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Pfam PF01411 tRNA synthetases class II (A) 6 555 1.3E-219 T 06-07-2017 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Pfam PF02272 DHHA1 domain 813 881 8.1E-12 T 06-07-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 SMART SM00863 653 706 6.7E-20 T 06-07-2017 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 868 5.7E-290 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 Gene3D G3DSA:3.30.930.10 4 241 5.1E-114 T 06-07-2017 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 SUPERFAMILY SSF55186 552 728 7.06E-50 T 06-07-2017 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 SUPERFAMILY SSF101353 246 461 5.49E-59 T 06-07-2017 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 1.8E-32 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 1.8E-32 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 1.8E-32 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 1.8E-32 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS00275 f3c33dab7c54c0e5b70e1cea64bc5394 887 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 1.8E-32 T 06-07-2017 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDO28_RS29330 6cf5412fbe685c27b9a74ebfdd18386e 133 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 26 122 2.1E-33 T 06-07-2017 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 CDO28_RS29330 6cf5412fbe685c27b9a74ebfdd18386e 133 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 34 105 1.6E-16 T 06-07-2017 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 CDO28_RS22655 fbacabdbbb17ce0eb3d7acedf72d4799 556 SUPERFAMILY SSF53850 38 537 6.52E-92 T 06-07-2017 CDO28_RS22655 fbacabdbbb17ce0eb3d7acedf72d4799 556 Gene3D G3DSA:3.10.105.10 288 521 1.7E-40 T 06-07-2017 CDO28_RS22655 fbacabdbbb17ce0eb3d7acedf72d4799 556 PIRSF PIRSF002741 3 543 3.6E-58 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS22655 fbacabdbbb17ce0eb3d7acedf72d4799 556 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 455 1.6E-67 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS22655 fbacabdbbb17ce0eb3d7acedf72d4799 556 Gene3D G3DSA:3.90.76.10 49 207 1.6E-26 T 06-07-2017 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 PRINTS PR00412 Epoxide hydrolase signature 375 397 8.8E-10 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 PRINTS PR00412 Epoxide hydrolase signature 113 131 8.8E-10 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 PRINTS PR00412 Epoxide hydrolase signature 187 200 8.8E-10 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 PRINTS PR00412 Epoxide hydrolase signature 142 157 8.8E-10 T 06-07-2017 IPR000639 Epoxide hydrolase-like GO:0003824 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 Pfam PF06441 Epoxide hydrolase N terminus 17 122 1.5E-33 T 06-07-2017 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 PIRSF PIRSF001112 2 402 1.7E-140 T 06-07-2017 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9|Reactome: R-HSA-211945 CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 Gene3D G3DSA:3.40.50.1820 11 401 1.0E-132 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19630 8b2f1bf3e50e3890808f0602168f9f86 402 SUPERFAMILY SSF53474 13 400 4.77E-95 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS20740 538758c56c5ec11b43d345e996142312 158 Pfam PF00072 Response regulator receiver domain 6 116 8.9E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20740 538758c56c5ec11b43d345e996142312 158 SMART SM00448 4 116 5.6E-5 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS20740 538758c56c5ec11b43d345e996142312 158 Gene3D G3DSA:3.40.50.2300 2 122 2.2E-25 T 06-07-2017 CDO28_RS20740 538758c56c5ec11b43d345e996142312 158 SUPERFAMILY SSF52172 1 123 4.27E-19 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 SUPERFAMILY SSF52540 4 222 3.04E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 SMART SM00382 278 473 0.0024 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 SMART SM00382 29 216 1.2E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 SUPERFAMILY SSF52540 266 483 2.01E-40 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 Gene3D G3DSA:3.40.50.300 3 222 2.4E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 Gene3D G3DSA:3.40.50.300 270 486 1.1E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 Pfam PF00005 ABC transporter 271 424 3.3E-15 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33040 18153bc74f04947c85170ed290adcea4 508 Pfam PF00005 ABC transporter 20 169 2.7E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10615 2b2b8848d053abc119e250c8acfba558 194 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 194 25.319 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 CDO28_RS10615 2b2b8848d053abc119e250c8acfba558 194 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 185 7.2E-35 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 CDO28_RS10615 2b2b8848d053abc119e250c8acfba558 194 SUPERFAMILY SSF52540 1 189 2.09E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10615 2b2b8848d053abc119e250c8acfba558 194 Gene3D G3DSA:3.40.50.300 1 192 1.8E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10615 2b2b8848d053abc119e250c8acfba558 194 Pfam PF01121 Dephospho-CoA kinase 2 175 1.4E-39 T 06-07-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 CDO28_RS12530 4cbbd576974b33216ac95fd2ac315342 121 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 18 107 4.4E-33 T 06-07-2017 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CDO28_RS12530 4cbbd576974b33216ac95fd2ac315342 121 Pfam PF03334 Na+/H+ antiporter subunit 18 98 4.4E-21 T 06-07-2017 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CDO28_RS26630 2affa448d1705a58effa3204311d25b9 340 SUPERFAMILY SSF53850 24 335 5.02E-60 T 06-07-2017 CDO28_RS26630 2affa448d1705a58effa3204311d25b9 340 Pfam PF13416 Bacterial extracellular solute-binding protein 44 304 3.1E-29 T 06-07-2017 CDO28_RS26630 2affa448d1705a58effa3204311d25b9 340 Gene3D G3DSA:3.40.190.10 131 265 2.4E-14 T 06-07-2017 CDO28_RS26630 2affa448d1705a58effa3204311d25b9 340 Gene3D G3DSA:3.40.190.10 2 124 1.8E-22 T 06-07-2017 CDO28_RS26630 2affa448d1705a58effa3204311d25b9 340 Gene3D G3DSA:3.40.190.10 266 307 1.8E-22 T 06-07-2017 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 Gene3D G3DSA:3.40.640.10 70 346 5.1E-75 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 PIRSF PIRSF000521 37 455 1.4E-33 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 SUPERFAMILY SSF53383 5 455 3.17E-113 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 Gene3D G3DSA:3.90.1150.10 6 68 3.4E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 Gene3D G3DSA:3.90.1150.10 349 455 3.4E-41 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS32665 ad66e6ad251f45cc8906ad31b4a28a99 458 Pfam PF00202 Aminotransferase class-III 30 452 1.7E-88 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS09945 52df62e4e4b0b2890d9ef08def85026e 152 Gene3D G3DSA:3.40.140.10 14 151 4.7E-47 T 06-07-2017 CDO28_RS09945 52df62e4e4b0b2890d9ef08def85026e 152 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 25 149 7.1E-44 T 06-07-2017 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-73614 CDO28_RS09945 52df62e4e4b0b2890d9ef08def85026e 152 SUPERFAMILY SSF53927 23 148 1.02E-44 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS09945 52df62e4e4b0b2890d9ef08def85026e 152 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 23 118 2.5E-13 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 CDO28_RS09945 52df62e4e4b0b2890d9ef08def85026e 152 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 74 114 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CDO28_RS16065 3b2bf518b5ba49048bbac648cfa486c0 285 Gene3D G3DSA:1.10.3720.10 5 272 1.8E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16065 3b2bf518b5ba49048bbac648cfa486c0 285 SUPERFAMILY SSF161098 8 285 1.4E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16065 3b2bf518b5ba49048bbac648cfa486c0 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 275 3.1E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 PIRSF PIRSF010386 10 564 9.7E-216 T 06-07-2017 IPR012166 Uncharacterised protein family RocB CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 Pfam PF01546 Peptidase family M20/M25/M40 146 311 6.2E-9 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 SUPERFAMILY SSF53187 451 539 1.49E-27 T 06-07-2017 CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 SUPERFAMILY SSF53187 8 107 1.49E-27 T 06-07-2017 CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 SUPERFAMILY SSF53187 149 228 1.49E-27 T 06-07-2017 CDO28_RS29780 f4b893ac8e89cfd973bf60d7a68d8b91 564 Gene3D G3DSA:3.40.630.10 18 335 1.3E-30 T 06-07-2017 CDO28_RS07860 0ef95274a2837cc7cba2c40ccd847256 153 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 31 77 1.2E-14 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS07860 0ef95274a2837cc7cba2c40ccd847256 153 SUPERFAMILY SSF69118 5 144 2.78E-48 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS07860 0ef95274a2837cc7cba2c40ccd847256 153 Gene3D G3DSA:1.20.1290.10 2 145 1.5E-54 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS07860 0ef95274a2837cc7cba2c40ccd847256 153 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 94 2.5E-22 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 Gene3D G3DSA:3.20.20.70 138 286 3.8E-56 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 296 4.8E-94 T 06-07-2017 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 Gene3D G3DSA:3.90.1170.20 7 137 1.8E-46 T 06-07-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 SUPERFAMILY SSF54675 7 116 6.18E-33 T 06-07-2017 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 SUPERFAMILY SSF51690 117 296 1.22E-54 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 28 115 4.2E-26 T 06-07-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 PIRSF PIRSF006250 9 299 1.6E-92 T 06-07-2017 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 CDO28_RS05030 2dc452a33dfd18a8fd89f3924e22fc09 299 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 117 296 2.6E-56 T 06-07-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDO28_RS07935 53bc28acc4219a4b3eaf4c6c7fcd53dd 218 SUPERFAMILY SSF51306 91 215 3.53E-27 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS07935 53bc28acc4219a4b3eaf4c6c7fcd53dd 218 Gene3D G3DSA:1.10.260.40 6 76 1.6E-9 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS07935 53bc28acc4219a4b3eaf4c6c7fcd53dd 218 Gene3D G3DSA:2.10.109.10 92 215 8.2E-23 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS07935 53bc28acc4219a4b3eaf4c6c7fcd53dd 218 Pfam PF00717 Peptidase S24-like 136 200 4.8E-14 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 SUPERFAMILY SSF47616 81 203 1.11E-19 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 Gene3D G3DSA:1.20.1050.10 88 194 5.5E-23 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 Pfam PF14497 Glutathione S-transferase, C-terminal domain 119 202 3.0E-6 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 SUPERFAMILY SSF52833 1 83 1.83E-21 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.3E-16 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS05765 cd65f0ad5032a7496b5c9fd485bcf8c4 206 Gene3D G3DSA:3.40.30.10 2 87 1.8E-27 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 Pfam PF00005 ABC transporter 30 178 3.7E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 Pfam PF00005 ABC transporter 283 437 1.2E-18 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 SMART SM00382 37 226 1.1E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 SMART SM00382 291 486 7.8E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 Gene3D G3DSA:3.40.50.300 280 499 5.1E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 Gene3D G3DSA:3.40.50.300 6 238 1.4E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 SUPERFAMILY SSF52540 12 235 9.32E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32340 5468d4b86aadaaf8be79cb9c3a8c5b9b 516 SUPERFAMILY SSF52540 278 497 2.21E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22280 76f474be897114a30e331bded36c1d11 407 Gene3D G3DSA:1.20.1250.20 219 402 1.2E-14 T 06-07-2017 CDO28_RS22280 76f474be897114a30e331bded36c1d11 407 Pfam PF07690 Major Facilitator Superfamily 37 335 1.7E-11 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS22280 76f474be897114a30e331bded36c1d11 407 Gene3D G3DSA:1.20.1250.20 30 201 1.1E-13 T 06-07-2017 CDO28_RS22280 76f474be897114a30e331bded36c1d11 407 SUPERFAMILY SSF103473 23 405 4.58E-38 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 Gene3D G3DSA:1.10.10.10 125 189 3.2E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 Gene3D G3DSA:1.10.1740.10 16 100 9.5E-26 T 06-07-2017 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 06-07-2017 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 187 1.1E-29 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 SUPERFAMILY SSF88946 3 100 2.75E-24 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 Pfam PF04542 Sigma-70 region 2 26 92 1.9E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 Pfam PF08281 Sigma-70, region 4 132 181 5.3E-13 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS30240 5552050a59b96b011b8704d978cf0d34 227 SUPERFAMILY SSF88659 102 190 8.41E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 2.0E-21 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 304 54.776 T 06-07-2017 IPR023009 Tyrosine recombinase XerC/XerD CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Gene3D G3DSA:1.10.150.130 7 98 1.0E-29 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Pfam PF00589 Phage integrase family 117 290 2.3E-42 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 304 62.328 T 06-07-2017 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 11 304 2.9E-100 T 06-07-2017 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 SUPERFAMILY SSF56349 7 295 1.82E-54 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS13720 de00aa31a53e047dc7ab3db14ec4329f 311 Gene3D G3DSA:1.10.443.10 113 296 9.5E-49 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS08810 3e5b72647f3b3b397ad3c4873090752c 134 Gene3D G3DSA:3.90.1590.10 1 131 1.4E-34 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS08810 3e5b72647f3b3b397ad3c4873090752c 134 SUPERFAMILY SSF51316 1 132 1.88E-38 T 06-07-2017 IPR011057 Mss4-like CDO28_RS08810 3e5b72647f3b3b397ad3c4873090752c 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 117 4.5E-25 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS29035 2c7bae7b08881a56bb7b3e71544ff031 158 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 154 4.4E-24 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS19105 60b4ef07fb2936918f6a90559f46fc6f 328 Pfam PF09865 Predicted periplasmic protein (DUF2092) 103 312 2.4E-63 T 06-07-2017 IPR019207 Protein of unknown function DUF2092, periplasmic CDO28_RS19105 60b4ef07fb2936918f6a90559f46fc6f 328 Gene3D G3DSA:2.50.20.10 106 308 1.9E-5 T 06-07-2017 CDO28_RS19105 60b4ef07fb2936918f6a90559f46fc6f 328 SUPERFAMILY SSF89392 106 311 4.32E-12 T 06-07-2017 IPR029046 Lipoprotein localisation LolA/LolB/LppX CDO28_RS33145 a11f89b7b932ad8854e75d7d269d5c1d 162 Pfam PF13523 Acetyltransferase (GNAT) domain 15 143 6.8E-28 T 06-07-2017 CDO28_RS33145 a11f89b7b932ad8854e75d7d269d5c1d 162 Gene3D G3DSA:3.40.630.30 4 145 1.5E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS33145 a11f89b7b932ad8854e75d7d269d5c1d 162 SMART SM01006 10 50 7.1E-6 T 06-07-2017 IPR019432 Siderophore biosynthesis protein, conserved domain CDO28_RS33145 a11f89b7b932ad8854e75d7d269d5c1d 162 SUPERFAMILY SSF55729 5 152 4.22E-37 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS32640 9b00ad2330c4bd2f33a0f372741faffe 293 Gene3D G3DSA:1.10.3720.10 60 289 3.5E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32640 9b00ad2330c4bd2f33a0f372741faffe 293 SUPERFAMILY SSF161098 54 280 2.49E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32640 9b00ad2330c4bd2f33a0f372741faffe 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 290 8.7E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26275 77080d80fdca10fb44f69c9c7456eeff 289 SUPERFAMILY SSF51569 6 286 9.34E-65 T 06-07-2017 CDO28_RS26275 77080d80fdca10fb44f69c9c7456eeff 289 Gene3D G3DSA:3.20.20.70 7 286 8.2E-76 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS26275 77080d80fdca10fb44f69c9c7456eeff 289 Pfam PF00682 HMGL-like 8 280 3.0E-43 T 06-07-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 CDO28_RS18265 94b8ef5acf7b211ae6a056228ee25321 331 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 328 1.2E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18265 94b8ef5acf7b211ae6a056228ee25321 331 SUPERFAMILY SSF161098 105 309 2.75E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18265 94b8ef5acf7b211ae6a056228ee25321 331 Gene3D G3DSA:1.10.3720.10 102 319 1.8E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 SUPERFAMILY SSF47741 136 218 1.44E-28 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 Pfam PF01799 [2Fe-2S] binding domain 125 213 1.8E-30 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 Gene3D G3DSA:1.10.150.120 127 219 1.7E-32 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 59 112 7.9E-8 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 SUPERFAMILY SSF54292 57 139 7.47E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 91 99 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS27300 593cd306daf5780db5f67920e4ba3ea8 220 Gene3D G3DSA:3.10.20.30 55 126 1.5E-30 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 SUPERFAMILY SSF52540 152 326 1.92E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 Hamap MF_01454 GTPase Obg [obg]. 2 327 44.973 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 Pfam PF01926 50S ribosome-binding GTPase 162 278 3.4E-24 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 325 3.5E-134 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 Gene3D G3DSA:3.40.50.300 160 334 6.5E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 PIRSF PIRSF002401 1 336 7.3E-128 T 06-07-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 Gene3D G3DSA:2.70.210.12 2 155 3.4E-56 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 1.2E-32 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.2E-32 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.2E-32 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 1.2E-32 T 06-07-2017 IPR006073 GTP binding domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 SUPERFAMILY SSF82051 2 158 3.66E-54 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 Pfam PF01018 GTP1/OBG 3 158 6.0E-58 T 06-07-2017 IPR006169 GTP1/OBG domain GO:0005525 CDO28_RS11555 1d91524d05d198660d85e6f82fa3c951 336 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 06-07-2017 IPR006074 GTP1/OBG, conserved site GO:0005525 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.4E-24 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 Gene3D G3DSA:1.10.10.10 1 85 2.6E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 Pfam PF03466 LysR substrate binding domain 88 287 2.1E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 SUPERFAMILY SSF46785 1 87 2.73E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-10 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 SUPERFAMILY SSF53850 88 288 7.29E-34 T 06-07-2017 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 Gene3D G3DSA:3.40.190.10 176 264 1.3E-25 T 06-07-2017 CDO28_RS29710 7bc8cc732374b94dc8959cc8738e084f 299 Gene3D G3DSA:3.40.190.10 88 175 1.0E-22 T 06-07-2017 CDO28_RS02430 56bcc8e46c101f98b3402135eb2498ab 591 SUPERFAMILY SSF69572 369 493 3.79E-26 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS02430 56bcc8e46c101f98b3402135eb2498ab 591 Gene3D G3DSA:3.40.50.720 369 472 4.0E-21 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02430 56bcc8e46c101f98b3402135eb2498ab 591 Pfam PF00899 ThiF family 365 584 2.0E-22 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 SUPERFAMILY SSF53328 86 282 2.62E-60 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 Pfam PF00551 Formyl transferase 86 263 1.1E-38 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 Gene3D G3DSA:3.40.50.170 86 282 1.8E-54 T 06-07-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 46.774 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PIRSF PIRSF036480 1 282 7.5E-111 T 06-07-2017 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 Gene3D G3DSA:3.30.70.260 1 81 4.1E-21 T 06-07-2017 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 3.7E-98 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 SUPERFAMILY SSF55021 3 81 1.92E-16 T 06-07-2017 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS12420 32438e7b579efa2d409d2f655b6a2881 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 3.1E-47 T 06-07-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS19695 432489815d9a2d410c9d06f480c06e0d 317 Gene3D G3DSA:1.10.3720.10 91 307 4.7E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19695 432489815d9a2d410c9d06f480c06e0d 317 SUPERFAMILY SSF161098 92 297 5.23E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19695 432489815d9a2d410c9d06f480c06e0d 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 314 1.1E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27955 6b877d0b3ed0538952a4495c944497b1 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 262 5.9E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27955 6b877d0b3ed0538952a4495c944497b1 274 Gene3D G3DSA:1.10.3720.10 2 260 2.1E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27955 6b877d0b3ed0538952a4495c944497b1 274 SUPERFAMILY SSF161098 3 269 8.88E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 SUPERFAMILY SSF52540 4 243 2.3E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 Pfam PF08402 TOBE domain 256 326 5.7E-11 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 Gene3D G3DSA:2.40.50.140 259 318 4.6E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 Pfam PF00005 ABC transporter 20 161 1.3E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 Gene3D G3DSA:3.40.50.300 3 235 3.7E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 SMART SM00382 28 212 1.5E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 SUPERFAMILY SSF50331 237 333 3.12E-20 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS32190 fee7634dd976267cecbcc236836a7c94 342 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS06680 0cf786f3958f1c3ada86b3fdc5d61f74 211 Gene3D G3DSA:1.10.340.30 14 196 7.1E-76 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS06680 0cf786f3958f1c3ada86b3fdc5d61f74 211 Pfam PF03352 Methyladenine glycosylase 18 195 2.2E-72 T 06-07-2017 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 CDO28_RS06680 0cf786f3958f1c3ada86b3fdc5d61f74 211 SUPERFAMILY SSF48150 14 199 1.41E-74 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS19910 22581b6034f4d16a84ed19d1952011cb 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 5 267 2.4E-30 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS24400 d45f1ee0fd2b00c45557c32f68b840c7 382 Gene3D G3DSA:3.20.20.70 56 321 7.1E-8 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS24400 d45f1ee0fd2b00c45557c32f68b840c7 382 Pfam PF06187 Protein of unknown function (DUF993) 3 382 1.6E-180 T 06-07-2017 IPR009334 Protein of unknown function DUF993 CDO28_RS24400 d45f1ee0fd2b00c45557c32f68b840c7 382 SUPERFAMILY SSF51569 45 328 6.91E-12 T 06-07-2017 CDO28_RS19435 93dd8b4eeb3f97c664e3683fa9b9c69f 105 PIRSF PIRSF031780 1 105 1.0E-44 T 06-07-2017 IPR009945 Protein of unknown function DUF1476 CDO28_RS19435 93dd8b4eeb3f97c664e3683fa9b9c69f 105 Pfam PF07345 Domain of unknown function (DUF1476) 3 101 1.1E-39 T 06-07-2017 IPR009945 Protein of unknown function DUF1476 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 81 139 1.0E-29 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 06-07-2017 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 9 160 31.458 T 06-07-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 153 3.9E-48 T 06-07-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 SUPERFAMILY SSF143243 10 156 1.44E-53 T 06-07-2017 CDO28_RS24750 2b3ff2d288573df557ca32158addb7fc 182 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 151 8.5E-49 T 06-07-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24320 7a619d1e257092e92abab6bc82e809b0 241 Pfam PF01925 Sulfite exporter TauE/SafE 13 234 7.1E-19 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 SUPERFAMILY SSF58104 300 553 4.71E-64 T 06-07-2017 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 SUPERFAMILY SSF58104 233 267 4.71E-64 T 06-07-2017 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 Pfam PF00672 HAMP domain 198 260 6.5E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 Gene3D G3DSA:1.10.287.950 308 526 1.1E-47 T 06-07-2017 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 352 552 6.5E-43 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 SMART SM00304 213 265 3.8E-7 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS24825 b569d3c6b8d6e743fe644384aef9c17d 561 SMART SM00283 294 552 7.7E-50 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 Gene3D G3DSA:2.170.130.10 41 192 1.5E-31 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 Gene3D G3DSA:2.40.170.20 195 724 3.6E-135 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 180 3.9E-18 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 SUPERFAMILY SSF56935 41 724 4.27E-130 T 06-07-2017 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 723 4.6E-109 T 06-07-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 CDO28_RS15905 6e8f12156fd6fad94264fc7e31fed66d 724 Pfam PF00593 TonB dependent receptor 484 723 1.2E-29 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS15910 ed32fdd4b304172fcca2ceefe3d14570 475 Gene3D G3DSA:3.40.309.10 259 445 4.7E-57 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS15910 ed32fdd4b304172fcca2ceefe3d14570 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS15910 ed32fdd4b304172fcca2ceefe3d14570 475 Pfam PF00171 Aldehyde dehydrogenase family 18 470 1.5E-157 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS15910 ed32fdd4b304172fcca2ceefe3d14570 475 SUPERFAMILY SSF53720 3 473 4.58E-148 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS15910 ed32fdd4b304172fcca2ceefe3d14570 475 Gene3D G3DSA:3.40.605.10 2 258 5.5E-88 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS27870 d1263ab3e1789f441155917fe0a5a68b 628 SMART SM01154 274 625 2.4E-132 T 06-07-2017 IPR012548 Protein of unknown function DUF1704 CDO28_RS27870 d1263ab3e1789f441155917fe0a5a68b 628 Pfam PF08014 Domain of unknown function (DUF1704) 276 619 3.0E-104 T 06-07-2017 IPR012548 Protein of unknown function DUF1704 CDO28_RS27870 d1263ab3e1789f441155917fe0a5a68b 628 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 249 615 3.0E-105 T 06-07-2017 IPR012656 Conserved hypothetical protein CHP02421, QEGLA CDO28_RS34305 5fb61b357c5d0992c4f021853678f3d2 403 Pfam PF03743 Bacterial conjugation TrbI-like protein 194 381 4.8E-61 T 06-07-2017 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI CDO28_RS22320 ba9b5c917bd2eb97bd02ba1cd190dcd4 39 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 10 39 9.4E-8 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS22990 ba9b5c917bd2eb97bd02ba1cd190dcd4 39 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 10 39 9.4E-8 T 06-07-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 7 237 1.0E-93 T 06-07-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 SUPERFAMILY SSF53633 5 237 3.53E-67 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 PIRSF PIRSF005650 2 240 1.8E-86 T 06-07-2017 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 5 238 41.302 T 06-07-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 Gene3D G3DSA:3.40.1160.10 2 238 2.4E-79 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS02885 b1158a2487fb272c08ad5ae7e23dc8ed 240 Pfam PF00696 Amino acid kinase family 8 217 6.9E-29 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS31685 c1d605cc2fc7688e63a1ae07efd74259 133 SUPERFAMILY SSF51182 28 119 1.13E-22 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS31685 c1d605cc2fc7688e63a1ae07efd74259 133 Gene3D G3DSA:2.60.120.10 44 121 1.8E-22 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS31685 c1d605cc2fc7688e63a1ae07efd74259 133 Pfam PF07883 Cupin domain 51 115 5.6E-18 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 PRINTS PR00050 Cold shock protein signature 4 19 5.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 PRINTS PR00050 Cold shock protein signature 25 34 5.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 PRINTS PR00050 Cold shock protein signature 40 58 5.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 SUPERFAMILY SSF50249 1 67 3.12E-22 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 6.1E-22 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 SMART SM00357 3 69 6.2E-22 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 PIRSF PIRSF002599 1 69 1.6E-20 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS34175 94133cecb60fad23b9cce8ed581c2014 69 Gene3D G3DSA:2.40.50.140 1 67 2.1E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS08120 70814e58bebeb264c5879127567e9725 260 SUPERFAMILY SSF52540 4 238 2.66E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08120 70814e58bebeb264c5879127567e9725 260 Gene3D G3DSA:3.40.50.300 3 247 5.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08120 70814e58bebeb264c5879127567e9725 260 Pfam PF00005 ABC transporter 22 180 1.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS08120 70814e58bebeb264c5879127567e9725 260 SMART SM00382 31 236 1.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13625 f3adbfdf8fdf4f2126ddebefe8f43b90 285 Gene3D G3DSA:1.10.3720.10 59 272 4.0E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13625 f3adbfdf8fdf4f2126ddebefe8f43b90 285 SUPERFAMILY SSF161098 88 271 4.45E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13625 f3adbfdf8fdf4f2126ddebefe8f43b90 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 268 1.6E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 Gene3D G3DSA:3.40.1160.10 25 294 5.8E-107 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 TIGRFAM TIGR00761 argB: acetylglutamate kinase 27 270 4.2E-77 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 Hamap MF_00082_B Acetylglutamate kinase [argB]. 24 295 36.603 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 PIRSF PIRSF000728 7 295 4.8E-106 T 06-07-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 Pfam PF00696 Amino acid kinase family 26 272 2.9E-52 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 SUPERFAMILY SSF53633 10 295 1.96E-92 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 PRINTS PR00474 Glutamate 5-kinase family signature 195 222 4.5E-8 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 PRINTS PR00474 Glutamate 5-kinase family signature 245 265 4.5E-8 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS08350 52994ce35ccff01f6f624ccff20433fb 295 PRINTS PR00474 Glutamate 5-kinase family signature 57 71 4.5E-8 T 06-07-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 CDO28_RS10630 a9ef3a0e132ec8ca2711a98ee5f342cc 273 Pfam PF03618 Kinase/pyrophosphorylase 10 265 1.8E-90 T 06-07-2017 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CDO28_RS10630 a9ef3a0e132ec8ca2711a98ee5f342cc 273 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 272 56.413 T 06-07-2017 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CDO28_RS30925 bbeb7489870ad31c1af62c4875fc0482 173 Gene3D G3DSA:3.30.1330.80 35 170 5.2E-33 T 06-07-2017 CDO28_RS30925 bbeb7489870ad31c1af62c4875fc0482 173 SUPERFAMILY SSF117856 37 167 2.22E-31 T 06-07-2017 CDO28_RS30925 bbeb7489870ad31c1af62c4875fc0482 173 Pfam PF03479 Domain of unknown function (DUF296) 38 150 2.0E-18 T 06-07-2017 IPR005175 PPC domain CDO28_RS30925 bbeb7489870ad31c1af62c4875fc0482 173 PIRSF PIRSF016702 26 173 6.0E-39 T 06-07-2017 IPR025707 Predicted DNA-binding protein with PD1-like DNA-binding motif CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 SMART SM00382 28 211 4.8E-21 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 SUPERFAMILY SSF52540 4 243 3.46E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 Pfam PF00005 ABC transporter 20 161 3.0E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 Gene3D G3DSA:3.40.50.300 4 233 1.1E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 Pfam PF08402 TOBE domain 276 350 1.7E-10 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 SUPERFAMILY SSF50331 237 351 1.64E-11 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS16160 7ed76fda82a1ff45bdb92ea0952bf08e 353 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09705 80f9d280263c044968e68c0a2a6c87d6 295 Pfam PF00892 EamA-like transporter family 153 278 3.0E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS09705 80f9d280263c044968e68c0a2a6c87d6 295 Pfam PF00892 EamA-like transporter family 7 140 1.8E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS09705 80f9d280263c044968e68c0a2a6c87d6 295 SUPERFAMILY SSF103481 186 282 2.09E-12 T 06-07-2017 CDO28_RS09705 80f9d280263c044968e68c0a2a6c87d6 295 SUPERFAMILY SSF103481 44 143 1.1E-8 T 06-07-2017 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Gene3D G3DSA:3.40.50.300 23 254 4.4E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Pfam PF00005 ABC transporter 39 181 9.2E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Gene3D G3DSA:2.40.50.140 307 377 1.1E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Gene3D G3DSA:2.40.50.100 259 306 7.8E-11 T 06-07-2017 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Gene3D G3DSA:2.40.50.100 378 390 7.8E-11 T 06-07-2017 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 Pfam PF08402 TOBE domain 302 384 4.0E-9 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 SUPERFAMILY SSF50331 257 392 5.59E-24 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 SMART SM00382 48 231 5.2E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20400 4111fcf7cf1796a77423b3ec90f29d2a 408 SUPERFAMILY SSF52540 24 264 1.3E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30575 510120a026535543aa98598676aeabee 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 267 1.7E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30575 510120a026535543aa98598676aeabee 272 Gene3D G3DSA:1.10.3720.10 11 261 3.4E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30575 510120a026535543aa98598676aeabee 272 SUPERFAMILY SSF161098 8 268 1.87E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02880 97fb4d4d6443daa46e25897693281280 186 SUPERFAMILY SSF55194 5 185 5.1E-70 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CDO28_RS02880 97fb4d4d6443daa46e25897693281280 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 186 2.2E-65 T 06-07-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CDO28_RS02880 97fb4d4d6443daa46e25897693281280 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 25.901 T 06-07-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CDO28_RS02880 97fb4d4d6443daa46e25897693281280 186 Gene3D G3DSA:1.10.132.20 67 186 8.3E-43 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CDO28_RS02880 97fb4d4d6443daa46e25897693281280 186 Pfam PF01765 Ribosome recycling factor 21 184 3.9E-60 T 06-07-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 Gene3D G3DSA:3.30.420.40 224 372 2.9E-18 T 06-07-2017 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 Gene3D G3DSA:1.10.10.10 8 76 8.2E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 SUPERFAMILY SSF46785 9 74 5.37E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 Pfam PF00480 ROK family 115 356 5.0E-14 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 SUPERFAMILY SSF53067 213 391 4.53E-19 T 06-07-2017 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 Gene3D G3DSA:3.30.420.40 81 223 1.5E-11 T 06-07-2017 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 Pfam PF13412 Winged helix-turn-helix DNA-binding 18 57 6.9E-7 T 06-07-2017 CDO28_RS28760 69a582746eab6e312c1f4089e6583a08 403 SUPERFAMILY SSF53067 82 200 4.44E-7 T 06-07-2017 CDO28_RS30740 fbfbb526f957d68ef50bc91c928bdb9e 157 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 28 77 3.9E-17 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS30740 fbfbb526f957d68ef50bc91c928bdb9e 157 Gene3D G3DSA:1.20.1290.10 4 145 1.6E-49 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS30740 fbfbb526f957d68ef50bc91c928bdb9e 157 SUPERFAMILY SSF69118 6 145 1.17E-43 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS30740 fbfbb526f957d68ef50bc91c928bdb9e 157 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 1.8E-20 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 Pfam PF04204 Homoserine O-succinyltransferase 25 321 2.5E-129 T 06-07-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 SUPERFAMILY SSF52317 41 319 4.17E-98 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 24 323 7.0E-114 T 06-07-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 PIRSF PIRSF000450 24 331 4.2E-147 T 06-07-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 59 315 1.0E-152 T 06-07-2017 CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 Gene3D G3DSA:3.40.50.880 57 323 3.8E-115 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS11455 d8f5d8fc7ee8de76870901b7d7bca5ef 331 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 24 323 52.108 T 06-07-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 SUPERFAMILY SSF46626 25 127 5.4E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 PRINTS PR00604 Class IA and IB cytochrome C signature 38 45 2.6E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 PRINTS PR00604 Class IA and IB cytochrome C signature 115 123 2.6E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 PRINTS PR00604 Class IA and IB cytochrome C signature 80 96 2.6E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 PRINTS PR00604 Class IA and IB cytochrome C signature 99 109 2.6E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 PRINTS PR00604 Class IA and IB cytochrome C signature 50 65 2.6E-13 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 Gene3D G3DSA:1.10.760.10 27 125 2.1E-30 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23820 21d741ed0d5f8f985813803aa3c935ab 130 Pfam PF00034 Cytochrome c 28 124 1.1E-8 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS09740 f506760e611f15e4f744aea3c71a1e28 183 SMART SM00287 118 177 2.0 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS09740 f506760e611f15e4f744aea3c71a1e28 183 SMART SM00287 44 107 5.2E-4 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS09740 f506760e611f15e4f744aea3c71a1e28 183 Pfam PF06347 Bacterial SH3 domain 123 175 7.3E-21 T 06-07-2017 IPR010466 Protein of unknown function DUF1058 CDO28_RS09740 f506760e611f15e4f744aea3c71a1e28 183 Pfam PF06347 Bacterial SH3 domain 50 106 2.4E-22 T 06-07-2017 IPR010466 Protein of unknown function DUF1058 CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 15 398 39.293 T 06-07-2017 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Pfam PF01966 HD domain 75 218 7.3E-14 T 06-07-2017 IPR006674 HD domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 SMART SM00471 71 228 2.2E-10 T 06-07-2017 IPR003607 HD/PDEase domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Gene3D G3DSA:1.10.3210.10 294 401 7.6E-80 T 06-07-2017 IPR006674 HD domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Gene3D G3DSA:1.10.3210.10 37 225 7.6E-80 T 06-07-2017 IPR006674 HD domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Pfam PF13286 Phosphohydrolase-associated domain 306 396 7.8E-24 T 06-07-2017 IPR026875 Phosphohydrolase-associated domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 Gene3D G3DSA:1.10.3410.10 226 278 1.5E-4 T 06-07-2017 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 37 398 3.6E-94 T 06-07-2017 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 SUPERFAMILY SSF109604 26 171 2.93E-87 T 06-07-2017 CDO28_RS02755 2c88ffac4cf5003a4e3c2223aa9ab61f 405 SUPERFAMILY SSF109604 199 401 2.93E-87 T 06-07-2017 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 550 587 6.7E-8 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 291 7.8E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 Pfam PF00005 ABC transporter 340 498 1.1E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 SUPERFAMILY SSF52540 320 570 2.61E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 Gene3D G3DSA:1.10.3720.10 82 288 1.0E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 SMART SM00382 348 548 1.1E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 SUPERFAMILY SSF161098 85 272 2.75E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32885 e23cfba58a899e73e60d130de66a1a8d 600 Gene3D G3DSA:3.40.50.300 320 571 4.4E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 SUPERFAMILY SSF46689 9 76 3.54E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 Gene3D G3DSA:1.10.10.60 9 73 2.0E-22 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 Gene3D G3DSA:1.10.357.10 84 193 6.4E-24 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 SUPERFAMILY SSF48498 87 191 1.34E-19 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS19375 32c085bdd17893dac03f4a67daca8946 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 2.7E-13 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32745 bac2238fb00181b42f5c787a9447d3c8 190 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 44 171 4.1E-28 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS32335 4ee53276be69ab3c745f0f59229edda3 214 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 12 210 2.3E-66 T 06-07-2017 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein CDO28_RS32335 4ee53276be69ab3c745f0f59229edda3 214 SUPERFAMILY SSF141318 40 202 5.49E-29 T 06-07-2017 CDO28_RS32335 4ee53276be69ab3c745f0f59229edda3 214 PIRSF PIRSF033535 1 214 3.8E-102 T 06-07-2017 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein CDO28_RS30080 64f2a6a6281639827e1c3957d014b23d 348 SUPERFAMILY SSF53659 14 340 2.3E-88 T 06-07-2017 CDO28_RS30080 64f2a6a6281639827e1c3957d014b23d 348 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 44 334 6.2E-80 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS30080 64f2a6a6281639827e1c3957d014b23d 348 Gene3D G3DSA:3.40.718.10 10 341 6.7E-95 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS30080 64f2a6a6281639827e1c3957d014b23d 348 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 12 338 32.472 T 06-07-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 CDO28_RS29040 c94ccc79bacd74493d84fbfe07e18c53 332 PIRSF PIRSF006470 5 332 3.7E-100 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS29040 c94ccc79bacd74493d84fbfe07e18c53 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 37 292 1.6E-81 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS29040 c94ccc79bacd74493d84fbfe07e18c53 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 314 1.4E-90 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS02505 0c635c0bd187d43d6b4cd141dbea5d24 517 SUPERFAMILY SSF58113 125 263 4.71E-5 T 06-07-2017 CDO28_RS02505 0c635c0bd187d43d6b4cd141dbea5d24 517 SUPERFAMILY SSF58104 282 465 3.4E-5 T 06-07-2017 CDO28_RS02505 0c635c0bd187d43d6b4cd141dbea5d24 517 Gene3D G3DSA:1.10.10.10 214 267 1.3E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Pfam PF00175 Oxidoreductase NAD-binding domain 117 206 2.0E-6 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 SUPERFAMILY SSF52343 110 228 3.8E-26 T 06-07-2017 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 SUPERFAMILY SSF63380 7 104 9.3E-24 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 268 276 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Pfam PF00970 Oxidoreductase FAD-binding domain 9 104 2.0E-4 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 94 108 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 80 94 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 141 150 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 116 135 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 3.3E-29 T 06-07-2017 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 240 311 2.2E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 SUPERFAMILY SSF54292 215 314 8.91E-21 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Gene3D G3DSA:2.40.30.10 7 104 2.1E-27 T 06-07-2017 CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Gene3D G3DSA:3.10.20.30 221 315 2.6E-22 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS10095 eebcd0c719bb2ce19d0599ac3af09eff 321 Gene3D G3DSA:3.40.50.80 108 220 5.8E-25 T 06-07-2017 CDO28_RS20670 b9ae26848da3d8774336dfe87d80aa86 391 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 10 390 7.3E-163 T 06-07-2017 IPR017818 Plasmid partitioning protein, RepA CDO28_RS20670 b9ae26848da3d8774336dfe87d80aa86 391 SUPERFAMILY SSF52540 110 373 1.04E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20670 b9ae26848da3d8774336dfe87d80aa86 391 Gene3D G3DSA:3.40.50.300 107 373 6.5E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20670 b9ae26848da3d8774336dfe87d80aa86 391 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 112 338 2.9E-33 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 Pfam PF07690 Major Facilitator Superfamily 260 429 5.6E-10 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 33 423 4.1E-138 T 06-07-2017 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 Pfam PF00083 Sugar (and other) transporter 28 237 2.1E-23 T 06-07-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 307 324 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 SUPERFAMILY SSF103473 24 429 2.22E-60 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 Gene3D G3DSA:1.20.1250.20 249 432 4.4E-15 T 06-07-2017 CDO28_RS16410 fa9643c1474f2b34a15f3bee9fb1c85a 436 Gene3D G3DSA:1.20.1250.20 25 232 5.2E-21 T 06-07-2017 CDO28_RS17555 b96c958286dcacd04ca276a9c5788378 271 Pfam PF00561 alpha/beta hydrolase fold 45 149 1.1E-19 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS17555 b96c958286dcacd04ca276a9c5788378 271 SUPERFAMILY SSF53474 24 265 3.62E-58 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS17555 b96c958286dcacd04ca276a9c5788378 271 Gene3D G3DSA:3.40.50.1820 24 266 8.0E-57 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 248 3.4E-64 T 06-07-2017 CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 SUPERFAMILY SSF51735 5 249 5.22E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 5.9E-5 T 06-07-2017 CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 6.0E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 6.0E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 6.0E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.5E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23625 76e81521eeac9cc79b3e8203fdc81195 251 Gene3D G3DSA:3.40.50.720 1 249 6.2E-82 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 SUPERFAMILY SSF53067 138 309 1.08E-34 T 06-07-2017 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 SUPERFAMILY SSF53067 15 135 9.5E-34 T 06-07-2017 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 SUPERFAMILY SSF109604 322 502 1.04E-13 T 06-07-2017 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 Pfam PF02541 Ppx/GppA phosphatase family 34 308 2.3E-46 T 06-07-2017 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 Gene3D G3DSA:3.30.420.150 140 308 5.2E-27 T 06-07-2017 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 16 306 8.2E-100 T 06-07-2017 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 CDO28_RS04555 0897784165da6ed5414fa188458e3726 507 Gene3D G3DSA:3.30.420.40 15 135 1.5E-36 T 06-07-2017 CDO28_RS00370 ac4d2fca48b51906e62bbb0d9983817d 77 PIRSF PIRSF003113 1 77 2.3E-18 T 06-07-2017 IPR002634 BolA protein CDO28_RS00370 ac4d2fca48b51906e62bbb0d9983817d 77 Pfam PF01722 BolA-like protein 27 77 3.2E-15 T 06-07-2017 IPR002634 BolA protein CDO28_RS00370 ac4d2fca48b51906e62bbb0d9983817d 77 SUPERFAMILY SSF82657 1 77 4.58E-23 T 06-07-2017 IPR002634 BolA protein CDO28_RS00370 ac4d2fca48b51906e62bbb0d9983817d 77 Gene3D G3DSA:3.30.300.90 2 77 6.5E-21 T 06-07-2017 IPR002634 BolA protein CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 SUPERFAMILY SSF56349 182 389 2.06E-37 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 Pfam PF00589 Phage integrase family 191 379 1.7E-13 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 Gene3D G3DSA:1.10.443.10 184 380 2.9E-48 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 Gene3D G3DSA:1.10.150.130 55 180 3.7E-10 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 SUPERFAMILY SSF47823 131 170 9.02E-7 T 06-07-2017 IPR010998 Integrase, Lambda-type, N-terminal CDO28_RS33985 4f9c161c6f25a62d86965f8a580e4271 391 SUPERFAMILY SSF47823 55 100 9.02E-7 T 06-07-2017 IPR010998 Integrase, Lambda-type, N-terminal CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 Pfam PF12833 Helix-turn-helix domain 221 299 4.6E-21 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 Gene3D G3DSA:1.10.10.60 201 251 1.8E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 Gene3D G3DSA:1.10.10.60 252 299 1.5E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 SUPERFAMILY SSF46689 201 247 9.28E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 SMART SM00342 214 297 9.5E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 SUPERFAMILY SSF46689 250 300 4.89E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 5.8E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS25590 18973d3a5f73fdf08bfac8537e419dbe 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 5.8E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS18150 92b35e6957ab4f6c54a2e4ce235efe02 111 Gene3D G3DSA:3.30.420.10 20 76 2.2E-4 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS18150 92b35e6957ab4f6c54a2e4ce235efe02 111 Pfam PF13358 DDE superfamily endonuclease 2 83 8.3E-22 T 06-07-2017 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 SUPERFAMILY SSF46894 131 234 1.39E-24 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 SMART SM00862 156 232 2.4E-23 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 Gene3D G3DSA:1.10.10.10 134 235 3.8E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 9.8E-22 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 SMART SM00448 5 115 3.1E-47 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 Gene3D G3DSA:3.40.50.2300 3 123 4.1E-42 T 06-07-2017 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 Pfam PF00072 Response regulator receiver domain 7 116 1.4E-31 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23805 f0a3c4e397306b6cabb8bf734838f9ce 239 SUPERFAMILY SSF52172 3 129 1.29E-43 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS02840 8f46c59da0a2f02c57321b767d070150 295 Pfam PF06230 Protein of unknown function (DUF1009) 68 284 7.1E-69 T 06-07-2017 IPR010415 Protein of unknown function DUF1009 CDO28_RS21085 54d13930512437996610e1a959f50e83 729 SUPERFAMILY SSF141868 478 719 1.01E-77 T 06-07-2017 IPR001633 EAL domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 SMART SM00267 293 462 1.2E-57 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 Gene3D G3DSA:3.30.70.270 306 468 2.5E-54 T 06-07-2017 CDO28_RS21085 54d13930512437996610e1a959f50e83 729 Gene3D G3DSA:3.20.20.450 476 720 1.2E-84 T 06-07-2017 IPR001633 EAL domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 Pfam PF00990 Diguanylate cyclase, GGDEF domain 304 458 1.4E-41 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 Pfam PF00563 EAL domain 479 709 9.2E-70 T 06-07-2017 IPR001633 EAL domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 300 461 3.6E-36 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 SMART SM00052 472 714 6.8E-90 T 06-07-2017 IPR001633 EAL domain CDO28_RS21085 54d13930512437996610e1a959f50e83 729 SUPERFAMILY SSF55073 309 464 1.57E-43 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS21085 54d13930512437996610e1a959f50e83 729 Pfam PF05228 CHASE4 domain 53 224 5.9E-24 T 06-07-2017 IPR007892 CHASE4 CDO28_RS17765 4fe5bdfd1017aae965525ac28f85c84d 368 PIRSF PIRSF039026 1 360 4.7E-119 T 06-07-2017 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like CDO28_RS17765 4fe5bdfd1017aae965525ac28f85c84d 368 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 27 0.0014 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS17765 4fe5bdfd1017aae965525ac28f85c84d 368 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 325 3.8E-63 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS16910 6efb7f479e23649b3e76590be743bd0e 482 Gene3D G3DSA:1.20.1250.20 273 450 2.2E-17 T 06-07-2017 CDO28_RS16910 6efb7f479e23649b3e76590be743bd0e 482 SUPERFAMILY SSF103473 20 458 1.26E-79 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS16910 6efb7f479e23649b3e76590be743bd0e 482 Gene3D G3DSA:1.20.1250.20 31 214 2.0E-34 T 06-07-2017 CDO28_RS16910 6efb7f479e23649b3e76590be743bd0e 482 Pfam PF00083 Sugar (and other) transporter 71 459 1.6E-50 T 06-07-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 PIRSF PIRSF000077 1 106 5.6E-44 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 Pfam PF00085 Thioredoxin 4 103 4.2E-35 T 06-07-2017 IPR013766 Thioredoxin domain GO:0045454 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 PRINTS PR00421 Thioredoxin family signature 70 81 1.3E-9 T 06-07-2017 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 PRINTS PR00421 Thioredoxin family signature 30 39 1.3E-9 T 06-07-2017 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 PRINTS PR00421 Thioredoxin family signature 22 30 1.3E-9 T 06-07-2017 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 Gene3D G3DSA:3.40.30.10 3 104 3.5E-40 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 SUPERFAMILY SSF52833 4 106 1.64E-39 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS10475 505b7591bd05c191b062dba815d5d972 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 105 2.0E-40 T 06-07-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Gene3D G3DSA:3.20.20.80 344 461 3.8E-85 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Gene3D G3DSA:3.20.20.80 3 104 3.8E-85 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Gene3D G3DSA:3.20.20.80 178 311 3.8E-85 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 SMART SM00642 14 415 6.5E-77 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 SUPERFAMILY SSF51445 5 318 3.68E-108 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 SUPERFAMILY SSF51445 347 458 3.68E-108 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Gene3D G3DSA:3.90.400.10 105 174 9.1E-20 T 06-07-2017 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 SUPERFAMILY SSF51011 462 539 9.89E-8 T 06-07-2017 CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Gene3D G3DSA:2.60.40.1180 465 538 1.2E-8 T 06-07-2017 IPR013780 Glycosyl hydrolase, all-beta CDO28_RS31095 d7e1a681198d43f9a8229eb53fa32ee3 544 Pfam PF00128 Alpha amylase, catalytic domain 29 380 1.4E-63 T 06-07-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 SUPERFAMILY SSF53850 88 294 1.14E-39 T 06-07-2017 CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 Gene3D G3DSA:1.10.10.10 3 84 2.3E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 SUPERFAMILY SSF46785 4 86 2.04E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 Gene3D G3DSA:3.40.190.10 90 172 2.9E-20 T 06-07-2017 CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 Gene3D G3DSA:3.40.190.10 173 260 6.9E-14 T 06-07-2017 CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.5E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS32970 9c52a396b6b182c8de350c2354e7844c 298 Pfam PF03466 LysR substrate binding domain 86 292 2.2E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 SUPERFAMILY SSF55447 225 323 1.57E-26 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Gene3D G3DSA:3.30.43.10 1 51 3.9E-19 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 227 318 2.7E-17 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Gene3D G3DSA:3.30.390.50 224 323 5.6E-34 T 06-07-2017 CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Gene3D G3DSA:3.30.465.10 56 113 7.2E-36 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Gene3D G3DSA:3.30.465.10 157 219 7.2E-36 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 SMART SM01092 226 324 8.1E-29 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 SUPERFAMILY SSF56176 1 219 4.2E-65 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS32570 2af81cb648cfc591277e86601fc8aa1c 327 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 219 9.9E-57 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 Gene3D G3DSA:1.10.10.60 138 192 4.5E-30 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 Gene3D G3DSA:3.40.50.2300 24 137 1.3E-28 T 06-07-2017 CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 SUPERFAMILY SSF52172 22 180 1.02E-32 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 Pfam PF00072 Response regulator receiver domain 26 134 1.2E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 Pfam PF02954 Bacterial regulatory protein, Fis family 158 186 1.7E-4 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS10310 bbc471447fc9b2a7fca95ec34515b9fd 194 SMART SM00448 23 134 4.4E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS19755 7b26af9f30e8f371e5a9d85b07c8e9a2 237 Gene3D G3DSA:3.90.1580.10 28 235 2.0E-41 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 CDO28_RS19755 7b26af9f30e8f371e5a9d85b07c8e9a2 237 Pfam PF03781 Sulfatase-modifying factor enzyme 1 28 232 6.6E-31 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 CDO28_RS19755 7b26af9f30e8f371e5a9d85b07c8e9a2 237 SUPERFAMILY SSF56436 28 235 5.88E-47 T 06-07-2017 IPR016187 C-type lectin fold CDO28_RS21935 d063e5bdade9733e66e59ae5a00e5e15 347 Pfam PF07536 HWE histidine kinase 153 235 4.3E-23 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS21935 d063e5bdade9733e66e59ae5a00e5e15 347 SMART SM00911 153 235 1.2E-24 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS21935 d063e5bdade9733e66e59ae5a00e5e15 347 SUPERFAMILY SSF55874 212 309 5.27E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS24335 7224f65992b3e34a21acf4a447bc0490 319 SUPERFAMILY SSF161098 92 280 1.09E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24335 7224f65992b3e34a21acf4a447bc0490 319 Gene3D G3DSA:1.10.3720.10 88 292 5.2E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24335 7224f65992b3e34a21acf4a447bc0490 319 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 68 3.5E-10 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS24335 7224f65992b3e34a21acf4a447bc0490 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 295 4.4E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32370 449087063c8abfc0308908cf612c6d80 121 SUPERFAMILY SSF52172 1 120 4.27E-42 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS32370 449087063c8abfc0308908cf612c6d80 121 SMART SM00448 2 115 2.0E-41 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32370 449087063c8abfc0308908cf612c6d80 121 Pfam PF00072 Response regulator receiver domain 4 115 1.5E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS32370 449087063c8abfc0308908cf612c6d80 121 Gene3D G3DSA:3.40.50.2300 1 119 2.8E-44 T 06-07-2017 CDO28_RS02510 2bdd0e1cd861316fb20c44a894fce383 360 Gene3D G3DSA:3.30.1330.60 210 349 1.4E-9 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS02510 2bdd0e1cd861316fb20c44a894fce383 360 Pfam PF00691 OmpA family 214 312 1.1E-5 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS02510 2bdd0e1cd861316fb20c44a894fce383 360 SUPERFAMILY SSF103088 210 349 2.88E-8 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS13540 2e46aa8b4be645930130e392ed6fe86f 93 SUPERFAMILY SSF55729 5 91 1.08E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS13540 2e46aa8b4be645930130e392ed6fe86f 93 Pfam PF14542 GCN5-related N-acetyl-transferase 13 90 8.9E-24 T 06-07-2017 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase CDO28_RS13540 2e46aa8b4be645930130e392ed6fe86f 93 Gene3D G3DSA:3.40.630.30 1 91 3.0E-33 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 Pfam PF00005 ABC transporter 23 164 3.7E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 SUPERFAMILY SSF50331 240 348 6.23E-7 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 SUPERFAMILY SSF52540 6 243 7.72E-88 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 Gene3D G3DSA:3.40.50.300 6 237 4.2E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 SMART SM00382 31 214 4.1E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32485 9187c0d1210c3823eba536b34be5f8e2 349 Pfam PF08402 TOBE domain 275 347 6.4E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 Gene3D G3DSA:2.40.50.140 393 449 2.0E-9 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 Pfam PF01957 NfeD-like C-terminal, partner-binding 314 450 5.2E-39 T 06-07-2017 IPR002810 NfeD-like, C-terminal domain CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 SUPERFAMILY SSF52096 5 210 2.37E-23 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 SUPERFAMILY SSF141322 386 449 1.7E-13 T 06-07-2017 CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 Gene3D G3DSA:3.90.226.10 188 224 2.2E-16 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28330 89e2527a8f4d42b580a6fa8369664c7c 460 Gene3D G3DSA:3.90.226.10 28 129 2.2E-16 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 SUPERFAMILY SSF88946 16 112 1.13E-34 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 SUPERFAMILY SSF88659 185 277 7.85E-19 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 Gene3D G3DSA:1.10.601.10 10 111 2.5E-32 T 06-07-2017 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 Pfam PF04545 Sigma-70, region 4 223 274 1.0E-16 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 Gene3D G3DSA:1.10.10.10 218 278 1.1E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PRINTS PR00046 Major sigma-70 factor signature 261 272 2.4E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PRINTS PR00046 Major sigma-70 factor signature 68 81 2.4E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PRINTS PR00046 Major sigma-70 factor signature 92 100 2.4E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PRINTS PR00046 Major sigma-70 factor signature 227 239 2.4E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PRINTS PR00046 Major sigma-70 factor signature 246 261 2.4E-24 T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 39 276 7.7E-31 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 Pfam PF04542 Sigma-70 region 2 46 113 6.7E-17 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 68 81 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 PIRSF PIRSF000770 4 286 1.4E-33 T 06-07-2017 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 CDO28_RS11055 766d53f97529298f5308b10815b7596c 288 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 246 272 - T 06-07-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21725 1e0f40022729a0ddf8420522a1c9387b 312 SUPERFAMILY SSF52540 4 227 4.02E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21725 1e0f40022729a0ddf8420522a1c9387b 312 SMART SM00382 30 240 6.8E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21725 1e0f40022729a0ddf8420522a1c9387b 312 Gene3D G3DSA:3.40.50.300 2 226 1.1E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21725 1e0f40022729a0ddf8420522a1c9387b 312 Pfam PF00005 ABC transporter 23 165 7.4E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS02490 5f944d594e323b5e92bb543a229afc31 220 Pfam PF00565 Staphylococcal nuclease homologue 39 140 1.6E-14 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS02490 5f944d594e323b5e92bb543a229afc31 220 SMART SM00318 17 141 3.6E-15 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS02490 5f944d594e323b5e92bb543a229afc31 220 SUPERFAMILY SSF50199 15 145 1.16E-31 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS02490 5f944d594e323b5e92bb543a229afc31 220 Gene3D G3DSA:2.40.50.90 19 141 2.6E-23 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 Gene3D G3DSA:3.40.50.2300 1 120 5.9E-39 T 06-07-2017 CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 218 1.1E-14 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 Pfam PF00072 Response regulator receiver domain 3 112 4.6E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 Gene3D G3DSA:1.10.10.10 124 220 6.8E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 SUPERFAMILY SSF52172 1 170 1.25E-40 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 SMART SM00448 1 112 7.4E-40 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS29905 c58cb19ac64cc2c316cdb84535e6224b 225 SMART SM00862 145 218 4.7E-15 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 Gene3D G3DSA:3.30.590.10 102 420 4.8E-72 T 06-07-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 SMART SM01230 99 347 2.0E-67 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 Pfam PF00120 Glutamine synthetase, catalytic domain 100 426 8.9E-70 T 06-07-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 Gene3D G3DSA:3.10.20.70 12 101 4.7E-5 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 SUPERFAMILY SSF55931 99 426 1.28E-75 T 06-07-2017 CDO28_RS14275 00c0dff0d1222949d6d417c3b6fd24ce 437 Pfam PF16952 Glutamine synthetase N-terminal domain 10 98 5.6E-17 T 06-07-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDO28_RS16210 df09aeddb6d5859ad7f5e505d3208011 238 SUPERFAMILY SSF52540 1 219 1.43E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16210 df09aeddb6d5859ad7f5e505d3208011 238 Gene3D G3DSA:3.40.50.300 3 217 2.7E-31 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16210 df09aeddb6d5859ad7f5e505d3208011 238 PIRSF PIRSF009320 1 225 3.1E-35 T 06-07-2017 CDO28_RS16210 df09aeddb6d5859ad7f5e505d3208011 238 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 174 4.1E-23 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 Gene3D G3DSA:1.10.8.100 214 274 2.1E-26 T 06-07-2017 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201 CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 79 - T 06-07-2017 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 SUPERFAMILY SSF53335 16 273 3.93E-76 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 274 51.807 T 06-07-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 273 3.0E-68 T 06-07-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 SMART SM00650 35 210 4.1E-67 T 06-07-2017 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 Gene3D G3DSA:3.40.50.150 6 210 4.8E-65 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04760 bdca489d6d798ee035be832b2baaeac5 274 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 273 6.8E-45 T 06-07-2017 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 SUPERFAMILY SSF54373 273 358 1.84E-6 T 06-07-2017 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 SUPERFAMILY SSF51905 3 55 4.27E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 SUPERFAMILY SSF51905 108 270 4.27E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 SUPERFAMILY SSF51905 358 415 4.27E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 Pfam PF01266 FAD dependent oxidoreductase 4 396 1.5E-52 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 Gene3D G3DSA:3.50.50.60 109 131 1.4E-56 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 Gene3D G3DSA:3.50.50.60 358 415 1.4E-56 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 Gene3D G3DSA:3.50.50.60 187 269 1.4E-56 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS06900 bd4d9f77212421d32a35c7e17c30c0b0 417 Gene3D G3DSA:3.50.50.60 2 59 1.4E-56 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS08670 d2ff6110666a9a91ced33f834770c9e4 137 Gene3D G3DSA:3.10.180.10 5 134 6.9E-31 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS08670 d2ff6110666a9a91ced33f834770c9e4 137 SUPERFAMILY SSF54593 4 132 7.84E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS08670 d2ff6110666a9a91ced33f834770c9e4 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 127 1.4E-13 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS34700 d1c52afa07ee90054d2d708518c8bda8 55 Pfam PF01527 Transposase 5 51 6.2E-12 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS34700 d1c52afa07ee90054d2d708518c8bda8 55 SUPERFAMILY SSF48295 4 51 2.46E-11 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS34700 d1c52afa07ee90054d2d708518c8bda8 55 Gene3D G3DSA:1.10.10.10 4 52 1.1E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06025 4b6439b7621d9b4b62fbeffc3a98d079 292 Gene3D G3DSA:1.20.120.80 86 283 2.5E-74 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06025 4b6439b7621d9b4b62fbeffc3a98d079 292 Gene3D G3DSA:1.10.287.70 5 85 1.8E-29 T 06-07-2017 CDO28_RS06025 4b6439b7621d9b4b62fbeffc3a98d079 292 Pfam PF00510 Cytochrome c oxidase subunit III 9 283 2.0E-90 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS06025 4b6439b7621d9b4b62fbeffc3a98d079 292 SUPERFAMILY SSF81452 6 283 8.37E-98 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS10790 ae30b146653a920dd383d0dd5218ad1a 134 Gene3D G3DSA:3.40.50.1010 5 133 2.1E-33 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS10790 ae30b146653a920dd383d0dd5218ad1a 134 SUPERFAMILY SSF88723 5 133 9.25E-33 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS10790 ae30b146653a920dd383d0dd5218ad1a 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 131 10.117 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS10790 ae30b146653a920dd383d0dd5218ad1a 134 Pfam PF01850 PIN domain 5 124 6.3E-16 T 06-07-2017 IPR002716 PIN domain CDO28_RS20935 771dd051679ce1d99f0745d00a347f28 231 Pfam PF07886 BA14K-like protein 201 231 3.3E-14 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS20935 771dd051679ce1d99f0745d00a347f28 231 Pfam PF07886 BA14K-like protein 123 152 7.3E-13 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS24205 95fe6062bb91ad5275fee63204d30a38 398 Pfam PF06792 Uncharacterised protein family (UPF0261) 2 394 4.5E-155 T 06-07-2017 IPR008322 Uncharacterised protein family UPF0261 CDO28_RS24205 95fe6062bb91ad5275fee63204d30a38 398 PIRSF PIRSF033271 1 398 2.1E-205 T 06-07-2017 IPR008322 Uncharacterised protein family UPF0261 CDO28_RS24205 95fe6062bb91ad5275fee63204d30a38 398 Hamap MF_00677 UPF0261 protein . 1 398 51.293 T 06-07-2017 IPR008322 Uncharacterised protein family UPF0261 CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 Gene3D G3DSA:1.10.260.40 12 48 7.1E-13 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 Gene3D G3DSA:3.40.50.2300 175 307 1.3E-17 T 06-07-2017 CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 SUPERFAMILY SSF53822 72 311 4.5E-30 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 Pfam PF13407 Periplasmic binding protein domain 108 306 8.5E-24 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 48 1.7E-8 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 SUPERFAMILY SSF47413 12 50 1.13E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS14505 f3ac4382b9e53bf44ef1400f126dea91 332 Gene3D G3DSA:3.40.50.2300 108 174 7.4E-11 T 06-07-2017 CDO28_RS15895 8a0d34d79d9868e4b193b08b41e7181b 377 Gene3D G3DSA:3.40.50.1980 180 354 1.2E-18 T 06-07-2017 CDO28_RS15895 8a0d34d79d9868e4b193b08b41e7181b 377 Pfam PF01497 Periplasmic binding protein 113 320 1.5E-20 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS15895 8a0d34d79d9868e4b193b08b41e7181b 377 Gene3D G3DSA:3.40.50.1980 33 178 8.0E-12 T 06-07-2017 CDO28_RS15895 8a0d34d79d9868e4b193b08b41e7181b 377 SUPERFAMILY SSF53807 35 346 5.89E-42 T 06-07-2017 CDO28_RS05320 a11c33946feda546ae7e8009fcd233e3 495 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 216 6.1E-16 T 06-07-2017 CDO28_RS22940 9c2f4645492beb3e630f9327f9584187 68 SUPERFAMILY SSF159203 1 64 1.09E-22 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain CDO28_RS22940 9c2f4645492beb3e630f9327f9584187 68 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 64 2.9E-27 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 CDO28_RS22940 9c2f4645492beb3e630f9327f9584187 68 Pfam PF06988 NifT/FixU protein 1 63 2.6E-25 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 CDO28_RS22940 9c2f4645492beb3e630f9327f9584187 68 Gene3D G3DSA:2.40.50.240 1 63 3.0E-31 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 SUPERFAMILY SSF52172 26 176 2.13E-30 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 217 3.5E-18 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 SMART SM00421 160 218 1.6E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 Gene3D G3DSA:3.40.50.2300 26 168 2.6E-29 T 06-07-2017 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 SMART SM00448 24 136 1.0E-27 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 SUPERFAMILY SSF46894 156 217 8.5E-15 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 Gene3D G3DSA:1.10.10.10 169 218 4.0E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28590 05d8cad1e739039849116237cb1af907 233 Pfam PF00072 Response regulator receiver domain 26 136 5.5E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 2.9E-17 T 06-07-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 594 7.5E-38 T 06-07-2017 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Gene3D G3DSA:2.40.110.10 162 268 1.7E-26 T 06-07-2017 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 34 1.2E-10 T 06-07-2017 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 5.8E-15 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 SUPERFAMILY SSF47203 288 475 1.08E-46 T 06-07-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Gene3D G3DSA:1.10.540.10 36 159 1.6E-21 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Gene3D G3DSA:1.20.140.10 269 459 1.1E-45 T 06-07-2017 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 157 7.1E-17 T 06-07-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 CDO28_RS07905 7d7afa9bb2db6e34d9c1c78224e8c51c 598 SUPERFAMILY SSF56645 38 279 1.44E-62 T 06-07-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CDO28_RS22000 133b53a85b8f43b79596193e40dc5a65 443 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 126 353 1.4E-86 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS22000 133b53a85b8f43b79596193e40dc5a65 443 Gene3D G3DSA:3.40.50.1820 142 358 6.6E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS22000 133b53a85b8f43b79596193e40dc5a65 443 PIRSF PIRSF033909 13 384 2.2E-165 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS22000 133b53a85b8f43b79596193e40dc5a65 443 SUPERFAMILY SSF53474 122 306 3.09E-14 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS26985 b11273b3564b8ee464a3116d58de9101 394 Pfam PF02515 CoA-transferase family III 5 379 8.6E-135 T 06-07-2017 IPR003673 CoA-transferase family III GO:0003824 CDO28_RS26985 b11273b3564b8ee464a3116d58de9101 394 SUPERFAMILY SSF89796 4 390 1.83E-141 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS26985 b11273b3564b8ee464a3116d58de9101 394 Gene3D G3DSA:3.30.1540.10 227 309 1.7E-35 T 06-07-2017 CDO28_RS26985 b11273b3564b8ee464a3116d58de9101 394 Gene3D G3DSA:3.40.50.10540 310 390 5.6E-115 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS26985 b11273b3564b8ee464a3116d58de9101 394 Gene3D G3DSA:3.40.50.10540 2 221 5.6E-115 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS12125 44eeba95d764656fa4277c225132969f 241 SUPERFAMILY SSF141488 159 231 7.19E-21 T 06-07-2017 IPR018660 C-type lysozyme, inhibitor CDO28_RS12125 44eeba95d764656fa4277c225132969f 241 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 165 230 1.5E-16 T 06-07-2017 IPR018660 C-type lysozyme, inhibitor CDO28_RS12125 44eeba95d764656fa4277c225132969f 241 Pfam PF03724 META domain 34 135 1.3E-27 T 06-07-2017 IPR005184 Domain of unknown function DUF306, Meta/HslJ CDO28_RS22690 3e62bc596a2a6e42fabe0d7632e5833c 105 Gene3D G3DSA:1.10.10.60 26 71 1.8E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22690 3e62bc596a2a6e42fabe0d7632e5833c 105 Pfam PF01527 Transposase 22 72 3.6E-20 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS22690 3e62bc596a2a6e42fabe0d7632e5833c 105 SUPERFAMILY SSF48295 12 69 9.42E-14 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Pfam PF00355 Rieske [2Fe-2S] domain 433 503 2.6E-10 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Pfam PF01266 FAD dependent oxidoreductase 31 375 3.2E-43 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Gene3D G3DSA:2.102.10.10 372 504 1.2E-28 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 SUPERFAMILY SSF50022 422 503 1.7E-22 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Gene3D G3DSA:3.50.50.60 20 105 1.0E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Gene3D G3DSA:3.50.50.60 340 371 1.0E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 Gene3D G3DSA:3.50.50.60 169 250 1.0E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 PRINTS PR00162 Rieske 2Fe-2S subunit signature 457 468 2.4E-6 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 PRINTS PR00162 Rieske 2Fe-2S subunit signature 490 502 2.4E-6 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 PRINTS PR00162 Rieske 2Fe-2S subunit signature 478 490 2.4E-6 T 06-07-2017 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 CDO28_RS14155 79452043489f47a9d75305f3599c354c 506 SUPERFAMILY SSF51905 29 303 7.99E-33 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31835 c36a832e94e7a113c383d1ba665c8061 454 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 166 334 3.2E-34 T 06-07-2017 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal CDO28_RS31835 c36a832e94e7a113c383d1ba665c8061 454 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 80 157 2.9E-14 T 06-07-2017 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal CDO28_RS07685 324aefe0b4ee3c2e5bb956c295bf9c93 407 Gene3D G3DSA:3.10.560.10 251 371 1.6E-22 T 06-07-2017 CDO28_RS07685 324aefe0b4ee3c2e5bb956c295bf9c93 407 Gene3D G3DSA:3.10.560.10 169 250 4.7E-18 T 06-07-2017 CDO28_RS07685 324aefe0b4ee3c2e5bb956c295bf9c93 407 Pfam PF02563 Polysaccharide biosynthesis/export protein 94 173 8.3E-14 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDO28_RS07685 324aefe0b4ee3c2e5bb956c295bf9c93 407 Gene3D G3DSA:3.30.1950.10 99 168 2.4E-16 T 06-07-2017 CDO28_RS07685 324aefe0b4ee3c2e5bb956c295bf9c93 407 Pfam PF10531 SLBB domain 181 229 3.7E-7 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 9.5E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 Gene3D G3DSA:1.10.10.10 8 75 1.2E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 Gene3D G3DSA:1.20.120.530 82 218 6.4E-32 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 Pfam PF07729 FCD domain 85 205 2.3E-14 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 SUPERFAMILY SSF46785 9 79 3.11E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 SMART SM00895 85 207 1.6E-11 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 SUPERFAMILY SSF48008 83 215 2.09E-22 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS18420 2e1f2aa0f2f82467beee3ab2217a57a1 221 SMART SM00345 17 75 1.5E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 SUPERFAMILY SSF47446 327 431 2.94E-34 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Gene3D G3DSA:1.10.260.30 327 431 5.0E-36 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.0E-21 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Gene3D G3DSA:3.40.50.300 96 297 1.4E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 SMART SM00962 100 296 1.5E-108 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 32.553 T 06-07-2017 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 SUPERFAMILY SSF52540 42 354 1.33E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Gene3D G3DSA:1.20.120.140 2 89 4.6E-33 T 06-07-2017 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 3.1E-184 T 06-07-2017 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Pfam PF02978 Signal peptide binding domain 327 427 8.1E-30 T 06-07-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 7.9E-69 T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 SMART SM00963 1 86 1.1E-32 T 06-07-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 SMART SM00382 99 301 6.2E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11135 848479a8a86851b594d030ff0c92f2ff 513 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 06-07-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00463 E-class P450 group I signature 280 306 1.1E-19 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00463 E-class P450 group I signature 402 412 1.1E-19 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00463 E-class P450 group I signature 260 277 1.1E-19 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00463 E-class P450 group I signature 367 391 1.1E-19 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00463 E-class P450 group I signature 412 435 1.1E-19 T 06-07-2017 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 Gene3D G3DSA:1.10.630.10 45 464 3.9E-97 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 Pfam PF00067 Cytochrome P450 50 449 3.0E-67 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 405 414 - T 06-07-2017 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00385 P450 superfamily signature 403 412 2.7E-12 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00385 P450 superfamily signature 271 288 2.7E-12 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00385 P450 superfamily signature 323 334 2.7E-12 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 PRINTS PR00385 P450 superfamily signature 412 423 2.7E-12 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS10335 7e40f414d5222c9429fd023b0ee11c53 466 SUPERFAMILY SSF48264 10 464 9.04E-92 T 06-07-2017 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 CDO28_RS27990 22318b5bbb060f54627b34eb73a50f5a 166 Pfam PF08592 Domain of unknown function (DUF1772) 37 163 1.4E-7 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 CDO28_RS18885 3b6487afc7c314a7456e23e1363399b3 64 Pfam PF11154 Protein of unknown function (DUF2934) 8 43 3.5E-15 T 06-07-2017 IPR021327 Protein of unknown function DUF2934 CDO28_RS05280 b681e7d6531866780f92ab655b0b47fc 113 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 68 112 1.0E-9 T 06-07-2017 IPR019223 Domain of unknown function DUF2147 CDO28_RS29345 44e505cd3c2627585635b0ac4a460236 220 PIRSF PIRSF010521 20 220 1.3E-81 T 06-07-2017 IPR010321 Protein of unknown function DUF922 CDO28_RS29345 44e505cd3c2627585635b0ac4a460236 220 Pfam PF06037 Bacterial protein of unknown function (DUF922) 54 213 2.8E-51 T 06-07-2017 IPR010321 Protein of unknown function DUF922 CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 Gene3D G3DSA:3.40.50.10490 110 278 3.9E-36 T 06-07-2017 CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 SUPERFAMILY SSF46689 16 88 1.36E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 SUPERFAMILY SSF53697 110 274 4.64E-37 T 06-07-2017 CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 Gene3D G3DSA:1.10.10.10 15 89 2.5E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 Pfam PF01418 Helix-turn-helix domain, rpiR family 16 89 4.3E-21 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS14375 4fffe9f6f08db9fb3537d337eed6dedd 296 Pfam PF01380 SIS domain 139 264 1.7E-18 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 5 287 9.1E-109 T 06-07-2017 IPR004678 Cytochrome c oxidase cbb3-type, subunit III CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 SUPERFAMILY SSF46626 30 64 1.37E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 SUPERFAMILY SSF46626 100 201 1.37E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 109 192 9.2E-14 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 205 280 1.7E-9 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 PIRSF PIRSF000006 1 287 1.4E-113 T 06-07-2017 IPR004678 Cytochrome c oxidase cbb3-type, subunit III CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Gene3D G3DSA:1.10.760.10 204 286 1.9E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Gene3D G3DSA:1.10.760.10 36 57 6.1E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Gene3D G3DSA:1.10.760.10 104 202 6.1E-28 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 SUPERFAMILY SSF46626 199 286 2.3E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 PRINTS PR00605 Class IC cytochrome C signature 258 280 1.1E-5 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 PRINTS PR00605 Class IC cytochrome C signature 214 225 1.1E-5 T 06-07-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 CDO28_RS22780 9834e9aee371480a07881dd5e9e43848 287 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 11 57 1.0E-26 T 06-07-2017 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal CDO28_RS25760 283a6a9dfa76b84cff54a8d1588c779e 321 Gene3D G3DSA:3.40.50.1980 28 153 3.1E-21 T 06-07-2017 CDO28_RS25760 283a6a9dfa76b84cff54a8d1588c779e 321 Pfam PF01497 Periplasmic binding protein 49 275 5.3E-26 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS25760 283a6a9dfa76b84cff54a8d1588c779e 321 SUPERFAMILY SSF53807 33 311 1.57E-58 T 06-07-2017 CDO28_RS25760 283a6a9dfa76b84cff54a8d1588c779e 321 Gene3D G3DSA:3.40.50.1980 157 311 5.6E-27 T 06-07-2017 CDO28_RS00600 c109332ab1817c2894fc67c52d903709 489 SUPERFAMILY SSF101960 39 486 3.14E-139 T 06-07-2017 CDO28_RS00600 c109332ab1817c2894fc67c52d903709 489 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 18 480 2.1E-192 T 06-07-2017 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 CDO28_RS00600 c109332ab1817c2894fc67c52d903709 489 Pfam PF01458 Uncharacterized protein family (UPF0051) 227 460 1.4E-67 T 06-07-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 SUPERFAMILY SSF50331 238 353 9.07E-12 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 35 354 6.3E-108 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 SUPERFAMILY SSF52540 5 243 1.1E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 Gene3D G3DSA:3.40.50.300 2 236 1.1E-82 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 Pfam PF00005 ABC transporter 21 162 3.2E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 Pfam PF08402 TOBE domain 279 354 1.0E-11 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS31985 31184bdea14617cf9164677fac1948d6 356 SMART SM00382 29 212 4.1E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09610 c2cd2a0197778f23fed2c133f7bf11b3 298 Gene3D G3DSA:3.40.50.10490 6 246 9.5E-58 T 06-07-2017 CDO28_RS09610 c2cd2a0197778f23fed2c133f7bf11b3 298 SUPERFAMILY SSF53697 6 246 4.04E-51 T 06-07-2017 CDO28_RS09610 c2cd2a0197778f23fed2c133f7bf11b3 298 Pfam PF13580 SIS domain 36 162 2.2E-15 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 PIRSF PIRSF036389 13 744 8.7E-241 T 06-07-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 SUPERFAMILY SSF56003 48 249 7.32E-36 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Gene3D G3DSA:3.30.365.10 537 738 2.1E-37 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 SUPERFAMILY SSF56003 332 740 4.19E-105 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 SMART SM01008 223 302 5.8E-20 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 606 692 7.7E-13 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 333 569 3.5E-31 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 60 191 1.8E-11 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Gene3D G3DSA:3.90.1170.50 198 300 2.2E-17 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 SUPERFAMILY SSF54665 224 300 3.17E-11 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Gene3D G3DSA:3.30.365.10 335 454 5.2E-28 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24640 de17dc0cd5f5a418d73e77693940fc96 747 Gene3D G3DSA:3.30.365.10 56 197 5.9E-29 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS24200 9dadd2e6d0888a96c14f9745779eeb67 280 PIRSF PIRSF034452 1 277 9.7E-165 T 06-07-2017 IPR009215 TIM-barrel domain, IGPS-like CDO28_RS24200 9dadd2e6d0888a96c14f9745779eeb67 280 SUPERFAMILY SSF51621 4 196 2.29E-78 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS24200 9dadd2e6d0888a96c14f9745779eeb67 280 Gene3D G3DSA:3.20.20.70 4 252 2.7E-124 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS24200 9dadd2e6d0888a96c14f9745779eeb67 280 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 9 273 8.4E-127 T 06-07-2017 IPR009215 TIM-barrel domain, IGPS-like CDO28_RS24200 9dadd2e6d0888a96c14f9745779eeb67 280 Gene3D G3DSA:1.20.5.460 253 273 1.5E-7 T 06-07-2017 CDO28_RS31885 f9b23e781df5d8320c99fe8ef8f23344 505 Pfam PF00171 Aldehyde dehydrogenase family 33 464 1.1E-48 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS31885 f9b23e781df5d8320c99fe8ef8f23344 505 SUPERFAMILY SSF53720 33 499 1.83E-103 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS31885 f9b23e781df5d8320c99fe8ef8f23344 505 Gene3D G3DSA:3.40.309.10 266 452 2.6E-54 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS31885 f9b23e781df5d8320c99fe8ef8f23344 505 Gene3D G3DSA:3.40.605.10 6 265 1.5E-49 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS28215 0c039366da5cd1282d18dfe64e4ff7f9 570 SUPERFAMILY SSF48208 214 559 7.29E-67 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS28215 0c039366da5cd1282d18dfe64e4ff7f9 570 Gene3D G3DSA:1.50.10.10 484 568 3.3E-4 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 CDO28_RS20870 a35cbcadb4015cf5647dd99cb842716d 324 Gene3D G3DSA:3.40.50.2300 146 303 2.5E-19 T 06-07-2017 CDO28_RS20870 a35cbcadb4015cf5647dd99cb842716d 324 Gene3D G3DSA:3.40.50.2300 20 145 7.6E-24 T 06-07-2017 CDO28_RS20870 a35cbcadb4015cf5647dd99cb842716d 324 SUPERFAMILY SSF53822 25 312 4.87E-43 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS20870 a35cbcadb4015cf5647dd99cb842716d 324 Pfam PF13407 Periplasmic binding protein domain 32 288 1.1E-37 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS08300 f2623aae47fb3bdb04c7e83e51517fcb 266 Pfam PF09335 SNARE associated Golgi protein 97 212 1.7E-21 T 06-07-2017 IPR032816 SNARE associated Golgi protein CDO28_RS34615 19d4bf188d4bc125f5f75abfbc769da5 261 Pfam PF07978 NIPSNAP 140 245 1.1E-5 T 06-07-2017 IPR012577 NIPSNAP CDO28_RS34615 19d4bf188d4bc125f5f75abfbc769da5 261 Pfam PF07978 NIPSNAP 13 109 1.0E-14 T 06-07-2017 IPR012577 NIPSNAP CDO28_RS34615 19d4bf188d4bc125f5f75abfbc769da5 261 SUPERFAMILY SSF54909 12 109 5.75E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS34615 19d4bf188d4bc125f5f75abfbc769da5 261 Gene3D G3DSA:3.30.70.900 11 108 2.2E-7 T 06-07-2017 CDO28_RS19700 2e78e2de39899a3abca9df55f818e647 295 SUPERFAMILY SSF161098 82 273 8.5E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19700 2e78e2de39899a3abca9df55f818e647 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 290 7.2E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19700 2e78e2de39899a3abca9df55f818e647 295 Gene3D G3DSA:1.10.3720.10 77 285 1.0E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33025 5345dbfb2baac1d10797dcdb5aa6d5ca 342 SUPERFAMILY SSF53822 36 326 2.19E-58 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS33025 5345dbfb2baac1d10797dcdb5aa6d5ca 342 Gene3D G3DSA:3.40.50.2300 153 283 2.3E-30 T 06-07-2017 CDO28_RS33025 5345dbfb2baac1d10797dcdb5aa6d5ca 342 Pfam PF13407 Periplasmic binding protein domain 46 284 7.6E-51 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS33025 5345dbfb2baac1d10797dcdb5aa6d5ca 342 Gene3D G3DSA:3.40.50.2300 37 152 5.6E-26 T 06-07-2017 CDO28_RS11160 6eae17231c4e89a8daec52ec52ce3912 197 Hamap MF_01514 UPF0314 protein . 3 196 41.107 T 06-07-2017 IPR019691 Protein of unknown function DUF2585 GO:0005886 CDO28_RS11160 6eae17231c4e89a8daec52ec52ce3912 197 Pfam PF10755 Protein of unknown function (DUF2585) 35 196 5.8E-84 T 06-07-2017 IPR019691 Protein of unknown function DUF2585 GO:0005886 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Gene3D G3DSA:3.40.228.10 151 358 1.1E-48 T 06-07-2017 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Pfam PF00384 Molybdopterin oxidoreductase 76 488 2.2E-46 T 06-07-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Gene3D G3DSA:3.40.50.740 382 491 1.5E-15 T 06-07-2017 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Gene3D G3DSA:2.40.40.20 576 710 8.5E-27 T 06-07-2017 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 SUPERFAMILY SSF50692 586 709 5.65E-30 T 06-07-2017 IPR009010 Aspartate decarboxylase-like domain CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 SUPERFAMILY SSF53706 21 594 2.88E-132 T 06-07-2017 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 SMART SM00926 17 73 1.0E-12 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 21 73 1.5E-6 T 06-07-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Pfam PF01568 Molydopterin dinucleotide binding domain 594 698 2.0E-19 T 06-07-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Gene3D G3DSA:2.20.25.90 16 76 2.3E-10 T 06-07-2017 CDO28_RS04600 d6043db95baa2bb66460afc24ad0a1bf 710 Gene3D G3DSA:3.40.50.740 77 130 2.8E-11 T 06-07-2017 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 SUPERFAMILY SSF51556 83 332 1.0E-18 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Gene3D G3DSA:2.30.40.10 29 124 1.6E-20 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Hamap MF_01518 Adenine deaminase [ade]. 30 586 32.102 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Pfam PF01979 Amidohydrolase family 81 365 7.4E-18 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Gene3D G3DSA:3.20.20.140 281 320 1.6E-5 T 06-07-2017 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Gene3D G3DSA:3.20.20.140 321 348 5.1E-8 T 06-07-2017 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Gene3D G3DSA:3.20.20.140 225 261 5.1E-8 T 06-07-2017 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 Pfam PF13382 Adenine deaminase C-terminal domain 416 581 1.5E-41 T 06-07-2017 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 SUPERFAMILY SSF51338 334 367 2.75E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS26655 875d16240bab6ac444e80dac4108e383 593 SUPERFAMILY SSF51338 21 84 2.75E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS01265 c2d97a4b2f827a7a8168d1636deaa470 322 Pfam PF03837 RecT family 9 201 3.3E-32 T 06-07-2017 IPR018330 RecT family GO:0003677|GO:0006259 CDO28_RS01265 c2d97a4b2f827a7a8168d1636deaa470 322 TIGRFAM TIGR01913 bet_lambda: phage recombination protein Bet 1 200 8.3E-56 T 06-07-2017 IPR010183 Bacteriophage lambda, Bet CDO28_RS16050 e0dd2ff369eb9872cae4586720e2f3ec 319 Gene3D G3DSA:3.40.50.1360 62 317 1.5E-75 T 06-07-2017 CDO28_RS16050 e0dd2ff369eb9872cae4586720e2f3ec 319 Pfam PF04198 Putative sugar-binding domain 66 317 1.7E-79 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS16050 e0dd2ff369eb9872cae4586720e2f3ec 319 SUPERFAMILY SSF100950 68 317 1.09E-66 T 06-07-2017 CDO28_RS18035 d68610005805668e19f4c80680cd61e5 30 SUPERFAMILY SSF52833 1 30 2.08E-7 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS18035 d68610005805668e19f4c80680cd61e5 30 Gene3D G3DSA:3.40.30.10 1 29 8.8E-7 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 Gene3D G3DSA:2.30.40.10 12 127 7.8E-11 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 SUPERFAMILY SSF51556 114 392 7.33E-50 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 SUPERFAMILY SSF51338 393 467 5.28E-20 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 SUPERFAMILY SSF51338 18 72 5.28E-20 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 Pfam PF01979 Amidohydrolase family 116 441 2.9E-20 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS14185 280dc0c73805e9847684531e9140fce7 497 Gene3D G3DSA:3.20.20.140 128 409 1.7E-55 T 06-07-2017 CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 SUPERFAMILY SSF51735 9 256 2.8E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 Gene3D G3DSA:3.40.50.720 3 258 1.1E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 6.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 6.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 6.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 256 2.1E-52 T 06-07-2017 CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.9E-28 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00045 45a167b4cdf2a1733fcb38721fdccb9e 273 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 188 4.0E-6 T 06-07-2017 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 SUPERFAMILY SSF53850 35 357 1.41E-55 T 06-07-2017 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 Pfam PF13416 Bacterial extracellular solute-binding protein 57 328 1.7E-24 T 06-07-2017 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 Gene3D G3DSA:3.40.190.10 147 301 9.3E-28 T 06-07-2017 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 63 84 8.2E-7 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 137 153 8.2E-7 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 278 297 8.2E-7 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 Gene3D G3DSA:3.40.190.10 302 331 1.5E-24 T 06-07-2017 CDO28_RS15930 5ec49f5d795dd794c25b5d339ca828f6 386 Gene3D G3DSA:3.40.190.10 35 146 1.5E-24 T 06-07-2017 CDO28_RS29010 32c35297ad62e9468512ea16ebe58928 269 Pfam PF08241 Methyltransferase domain 61 156 2.1E-20 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS29010 32c35297ad62e9468512ea16ebe58928 269 SUPERFAMILY SSF53335 11 244 7.0E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS29010 32c35297ad62e9468512ea16ebe58928 269 Gene3D G3DSA:3.40.50.150 15 245 3.3E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS17690 0425a0bf3edeebb391fb26d3bbc16367 117 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 112 9.4E-10 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS17690 0425a0bf3edeebb391fb26d3bbc16367 117 Gene3D G3DSA:3.10.180.10 8 115 1.4E-26 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS17690 0425a0bf3edeebb391fb26d3bbc16367 117 SUPERFAMILY SSF54593 8 115 3.89E-26 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS15050 f1e2933c34b8454db067d30fbaa2e13c 120 Pfam PF05957 Bacterial protein of unknown function (DUF883) 29 120 3.2E-11 T 06-07-2017 IPR010279 Protein of unknown function DUF883, ElaB CDO28_RS01590 0430434b36a3e905cbc7e22649464bb4 595 SUPERFAMILY SSF52266 319 342 2.5E-11 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS01590 0430434b36a3e905cbc7e22649464bb4 595 SUPERFAMILY SSF52266 414 584 2.5E-11 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS01590 0430434b36a3e905cbc7e22649464bb4 595 Gene3D G3DSA:3.40.50.1110 416 584 3.2E-9 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS01590 0430434b36a3e905cbc7e22649464bb4 595 Gene3D G3DSA:3.40.50.1110 321 356 3.2E-9 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS01590 0430434b36a3e905cbc7e22649464bb4 595 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 403 542 1.0E-7 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 Pfam PF06742 Protein of unknown function (DUF1214) 385 490 3.0E-29 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 SUPERFAMILY SSF160935 31 506 3.4E-130 T 06-07-2017 CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 Pfam PF06863 Protein of unknown function (DUF1254) 87 221 1.4E-29 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 Gene3D G3DSA:2.60.40.1610 86 225 2.8E-52 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 Gene3D G3DSA:1.10.3360.10 226 314 1.3E-28 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS00290 efe9b7f0ca2995097ad6ffea517a9fed 507 Gene3D G3DSA:2.60.120.600 323 506 4.7E-56 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 PIRSF PIRSF000709 2 193 4.0E-13 T 06-07-2017 CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 179 6.4E-40 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 SUPERFAMILY SSF53254 3 186 9.76E-47 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 SMART SM00855 2 161 4.6E-27 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 Gene3D G3DSA:3.40.50.1240 3 186 3.3E-47 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS06080 16584129637cc52c39716ed28af7b429 194 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 06-07-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Pfam PF00108 Thiolase, N-terminal domain 6 183 3.5E-19 T 06-07-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Pfam PF02803 Thiolase, C-terminal domain 261 379 2.8E-10 T 06-07-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 SUPERFAMILY SSF53901 20 120 6.13E-40 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 SUPERFAMILY SSF53901 187 375 6.13E-40 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Gene3D G3DSA:3.40.47.10 208 228 1.1E-23 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Gene3D G3DSA:3.40.47.10 13 122 1.1E-23 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Gene3D G3DSA:3.40.47.10 246 384 2.7E-21 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 Gene3D G3DSA:3.40.47.10 147 183 2.7E-21 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS00885 5c7f4421fa3f59c58c9c5ee37e3c9373 389 PIRSF PIRSF000429 1 387 1.1E-69 T 06-07-2017 IPR002155 Thiolase GO:0008152|GO:0016747 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 SUPERFAMILY SSF53244 317 455 3.94E-35 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 117 140 - T 06-07-2017 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 Pfam PF08245 Mur ligase middle domain 119 297 4.3E-31 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 SUPERFAMILY SSF53623 111 314 4.32E-51 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 456 31.614 T 06-07-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 Gene3D G3DSA:3.40.50.720 7 96 3.9E-13 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 451 2.0E-105 T 06-07-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 Gene3D G3DSA:3.40.1190.10 98 315 2.2E-60 T 06-07-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 SUPERFAMILY SSF51984 6 98 1.22E-12 T 06-07-2017 CDO28_RS16385 fcef3c13db29f6ceab040e503f78aa7f 463 Gene3D G3DSA:3.90.190.20 318 450 4.2E-40 T 06-07-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDO28_RS33955 1fcc83cc1ca870f06fb65e01eb901aa8 291 Gene3D G3DSA:1.10.3720.10 80 286 2.9E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33955 1fcc83cc1ca870f06fb65e01eb901aa8 291 SUPERFAMILY SSF161098 82 267 4.32E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33955 1fcc83cc1ca870f06fb65e01eb901aa8 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 284 2.3E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Gene3D G3DSA:1.10.1740.10 310 390 5.5E-26 T 06-07-2017 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 11 389 44.696 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 SUPERFAMILY SSF55347 132 270 1.44E-57 T 06-07-2017 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 11 138 2.2E-39 T 06-07-2017 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 152 235 1.6E-36 T 06-07-2017 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Pfam PF13288 DXP reductoisomerase C-terminal domain 267 384 1.1E-35 T 06-07-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 Gene3D G3DSA:3.40.50.720 7 156 2.2E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 SUPERFAMILY SSF69055 298 390 1.83E-26 T 06-07-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 388 1.2E-127 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 SUPERFAMILY SSF51735 9 156 2.52E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12120 4fc36780c21a0b274cc4131af4fabcf5 391 PIRSF PIRSF006205 8 391 2.4E-142 T 06-07-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 CDO28_RS15515 8a1848dad5aa2fd28e8dd95a474c3880 166 Pfam PF10722 Putative bacterial sensory transduction regulator 14 143 2.3E-29 T 06-07-2017 IPR019660 Putative sensory transduction regulator YbjN CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 SMART SM00079 43 261 0.0036 T 06-07-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 Gene3D G3DSA:3.40.190.10 40 120 1.9E-39 T 06-07-2017 CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 Gene3D G3DSA:3.40.190.10 221 262 1.9E-39 T 06-07-2017 CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 SUPERFAMILY SSF53850 17 262 6.65E-61 T 06-07-2017 CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 260 2.6E-58 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 Gene3D G3DSA:3.40.190.10 121 209 2.8E-17 T 06-07-2017 CDO28_RS20910 4e603b0041c3edd75cd6e1443e546a29 271 SMART SM00062 43 262 7.5E-52 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 Gene3D G3DSA:3.40.50.300 54 279 6.0E-75 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 TIGRFAM TIGR01288 nodI: nodulation ABC transporter NodI 54 355 1.9E-179 T 06-07-2017 IPR005978 Nodulation ABC transporter, NodI GO:0005215|GO:0005524|GO:0006810|GO:0009877|GO:0016020 CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 SMART SM00382 81 267 2.8E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 Pfam PF00005 ABC transporter 73 215 1.9E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 ProSitePatterns PS00211 ABC transporters family signature. 188 202 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS23145 0c5dcaf9d04b4897a1205416b3eaa1b4 355 SUPERFAMILY SSF52540 56 276 5.62E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08985 beb89dba94e547590a70d4c5ef2c61b0 212 Gene3D G3DSA:3.40.50.1580 25 205 1.5E-32 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS08985 beb89dba94e547590a70d4c5ef2c61b0 212 Pfam PF01048 Phosphorylase superfamily 126 176 2.8E-8 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS08985 beb89dba94e547590a70d4c5ef2c61b0 212 TIGRFAM TIGR01705 MTA/SAH-nuc-hyp: putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 211 1.1E-107 T 06-07-2017 IPR010050 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative CDO28_RS08985 beb89dba94e547590a70d4c5ef2c61b0 212 SUPERFAMILY SSF53167 30 199 3.67E-31 T 06-07-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 1.9E-55 T 06-07-2017 CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.2E-30 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 SUPERFAMILY SSF51735 7 253 2.65E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07005 ba16dbd218f19eac2e47ffb05ed47c1a 255 Gene3D G3DSA:3.40.50.720 3 250 1.3E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Gene3D G3DSA:3.30.43.10 10 109 1.6E-27 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 SUPERFAMILY SSF55103 234 472 4.41E-65 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Pfam PF01565 FAD binding domain 56 194 7.3E-40 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Gene3D G3DSA:1.10.45.10 437 470 9.3E-4 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Gene3D G3DSA:3.20.20.70 348 436 2.4E-4 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 470 1.5E-57 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 Gene3D G3DSA:3.30.465.10 112 231 8.2E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS06705 c45ed8286c0b77533ee629094da94f2b 479 SUPERFAMILY SSF56176 19 231 2.62E-69 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 15 414 4.7E-202 T 06-07-2017 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 257 266 - T 06-07-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 Pfam PF00155 Aminotransferase class I and II 59 403 5.9E-74 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 Gene3D G3DSA:3.90.1150.10 294 409 3.0E-24 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 SUPERFAMILY SSF53383 15 411 2.64E-109 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS25880 29b0078e2894f1ce99a7b131e7c3bd88 418 Gene3D G3DSA:3.40.640.10 77 293 2.0E-87 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS02675 ae0f5387b4e4f74fad3ca0fda5055c0f 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 5.1E-18 T 06-07-2017 IPR003849 Preprotein translocase YajC CDO28_RS02675 ae0f5387b4e4f74fad3ca0fda5055c0f 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 5.1E-18 T 06-07-2017 IPR003849 Preprotein translocase YajC CDO28_RS02675 ae0f5387b4e4f74fad3ca0fda5055c0f 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 101 1.1E-24 T 06-07-2017 IPR003849 Preprotein translocase YajC CDO28_RS02675 ae0f5387b4e4f74fad3ca0fda5055c0f 110 SMART SM01323 19 102 6.4E-40 T 06-07-2017 IPR003849 Preprotein translocase YajC CDO28_RS02675 ae0f5387b4e4f74fad3ca0fda5055c0f 110 Pfam PF02699 Preprotein translocase subunit 22 99 8.0E-27 T 06-07-2017 IPR003849 Preprotein translocase YajC CDO28_RS10465 4c8a1a74619fed5e982d2d9ebc6ccb45 1059 SUPERFAMILY SSF52540 362 731 1.7E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10465 4c8a1a74619fed5e982d2d9ebc6ccb45 1059 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 7 1048 0.0 T 06-07-2017 IPR014153 Double-strand break repair protein AddB CDO28_RS10465 4c8a1a74619fed5e982d2d9ebc6ccb45 1059 Pfam PF12705 PD-(D/E)XK nuclease superfamily 779 1017 3.2E-23 T 06-07-2017 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 222 7.5E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 206 7.5E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 222 234 7.5E-7 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 SMART SM00421 189 246 1.8E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 Gene3D G3DSA:1.10.10.10 195 251 1.5E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 SUPERFAMILY SSF46894 173 252 8.5E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 ProSitePatterns PS00622 LuxR-type HTH domain signature. 206 233 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 SUPERFAMILY SSF75516 3 181 9.15E-31 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 Pfam PF00196 Bacterial regulatory proteins, luxR family 191 246 5.7E-15 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 Gene3D G3DSA:3.30.450.80 1 194 2.1E-33 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS13040 b38b8b6186109725591530c0d1e30102 260 Pfam PF03472 Autoinducer binding domain 21 175 5.6E-29 T 06-07-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CDO28_RS32490 33e741ac1c90e79fef6ed63d31b40634 276 SUPERFAMILY SSF161098 3 256 2.24E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32490 33e741ac1c90e79fef6ed63d31b40634 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 243 8.0E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32490 33e741ac1c90e79fef6ed63d31b40634 276 Gene3D G3DSA:1.10.3720.10 4 242 9.3E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09615 cd057c84d4f26c34f8835c129ee61c23 419 SUPERFAMILY SSF53850 20 415 5.83E-75 T 06-07-2017 CDO28_RS09615 cd057c84d4f26c34f8835c129ee61c23 419 Gene3D G3DSA:3.40.190.10 141 335 2.0E-34 T 06-07-2017 CDO28_RS09615 cd057c84d4f26c34f8835c129ee61c23 419 Pfam PF13416 Bacterial extracellular solute-binding protein 45 348 6.1E-36 T 06-07-2017 CDO28_RS33575 5bc48967b23b3fd5d2edd320075cfade 345 SUPERFAMILY SSF55347 128 258 2.78E-17 T 06-07-2017 CDO28_RS33575 5bc48967b23b3fd5d2edd320075cfade 345 Gene3D G3DSA:3.30.360.10 138 341 2.1E-27 T 06-07-2017 CDO28_RS33575 5bc48967b23b3fd5d2edd320075cfade 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 6.9E-26 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS33575 5bc48967b23b3fd5d2edd320075cfade 345 SUPERFAMILY SSF51735 2 148 1.4E-45 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33575 5bc48967b23b3fd5d2edd320075cfade 345 Gene3D G3DSA:3.40.50.720 1 137 1.5E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 Gene3D G3DSA:3.60.150.10 9 361 1.2E-145 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 PIRSF PIRSF001456 3 365 3.5E-127 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 ProSitePatterns PS00789 Chorismate synthase signature 3. 329 345 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 Pfam PF01264 Chorismate synthase 10 355 1.3E-128 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 SUPERFAMILY SSF103263 3 360 7.46E-135 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 TIGRFAM TIGR00033 aroC: chorismate synthase 10 360 3.5E-122 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 ProSitePatterns PS00788 Chorismate synthase signature 2. 130 146 - T 06-07-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS06070 a26f0c9b9fdfa4c7e595892e3081396d 365 Hamap MF_00300 Chorismate synthase [aroC]. 10 362 35.336 T 06-07-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDO28_RS27585 414a7bbf079f1e718e4d393100493367 345 Pfam PF03601 Conserved hypothetical protein 698 23 320 1.0E-60 T 06-07-2017 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 Pfam PF00199 Catalase 41 425 4.0E-175 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 ProSitePatterns PS00438 Catalase proximal active site signature. 77 93 - T 06-07-2017 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 SMART SM01060 41 429 1.2E-266 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 SUPERFAMILY SSF52317 553 673 1.02E-15 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 Gene3D G3DSA:2.40.180.10 31 396 7.5E-176 T 06-07-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 Gene3D G3DSA:3.40.50.880 554 702 6.5E-40 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 SUPERFAMILY SSF56634 31 527 3.27E-212 T 06-07-2017 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 Pfam PF06628 Catalase-related immune-responsive 454 517 2.5E-21 T 06-07-2017 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 371 379 - T 06-07-2017 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PIRSF PIRSF038927 7 704 7.9E-302 T 06-07-2017 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 54 77 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 138 155 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 117 135 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 358 384 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 326 353 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS30610 a027b1a1d160b4968c1c73cf81e5ba5d 705 PRINTS PR00067 Catalase signature 157 175 3.4E-67 T 06-07-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 Gene3D G3DSA:3.40.50.720 1 179 1.4E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 SUPERFAMILY SSF48179 184 353 1.09E-43 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 182 325 3.7E-33 T 06-07-2017 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 100 6.1E-7 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 Gene3D G3DSA:1.10.1040.10 191 342 2.6E-41 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS32010 937f82c30081f151c909f96b46df91c7 359 SUPERFAMILY SSF51735 1 124 3.58E-18 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15975 5fbf0c8b8fe214fdbe1db8438be58160 369 Gene3D G3DSA:1.10.3720.10 142 357 3.5E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15975 5fbf0c8b8fe214fdbe1db8438be58160 369 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 168 366 5.6E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15975 5fbf0c8b8fe214fdbe1db8438be58160 369 SUPERFAMILY SSF161098 144 351 1.44E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 ProSitePatterns PS00893 Nudix box signature. 214 235 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 SUPERFAMILY SSF55811 132 322 4.06E-42 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 148 177 7.3E-9 T 06-07-2017 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 47 144 9.4E-10 T 06-07-2017 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 Gene3D G3DSA:3.90.79.10 130 321 2.5E-51 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS09450 8f34915e79553aa315f2b51105954d82 326 Pfam PF00293 NUDIX domain 184 288 1.8E-15 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 253 3.0E-61 T 06-07-2017 CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 3.4E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.1E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 SUPERFAMILY SSF51735 5 254 2.47E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23690 11a49ea049760fc17c6a7a666a4afb43 255 Gene3D G3DSA:3.40.50.720 4 254 1.5E-77 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 57 65 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 SUPERFAMILY SSF54292 23 96 2.1E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 SUPERFAMILY SSF47741 91 183 1.05E-25 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 Gene3D G3DSA:1.10.150.120 93 184 3.7E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 Pfam PF01799 [2Fe-2S] binding domain 91 178 1.1E-26 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 Gene3D G3DSA:3.10.20.30 21 92 5.0E-31 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS32575 5f25f1cd656a931984e90f3bde1cb4a4 188 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 24 78 1.5E-7 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 Pfam PF02384 N-6 DNA Methylase 67 289 3.0E-14 T 06-07-2017 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 06-07-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 Gene3D G3DSA:3.40.50.150 75 290 1.7E-28 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 101 115 2.6E-16 T 06-07-2017 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 209 233 2.6E-16 T 06-07-2017 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 73 89 2.6E-16 T 06-07-2017 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 177 189 2.6E-16 T 06-07-2017 CDO28_RS02465 0bcd927e032c21ceed57a7ba85052e2c 524 SUPERFAMILY SSF53335 27 297 8.52E-41 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS32875 29e2fdff85e20584612020a30479d7c6 517 Gene3D G3DSA:3.40.190.10 137 284 3.0E-51 T 06-07-2017 CDO28_RS32875 29e2fdff85e20584612020a30479d7c6 517 SUPERFAMILY SSF53850 27 515 1.16E-143 T 06-07-2017 CDO28_RS32875 29e2fdff85e20584612020a30479d7c6 517 PIRSF PIRSF002741 4 511 1.2E-127 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS32875 29e2fdff85e20584612020a30479d7c6 517 Gene3D G3DSA:3.10.105.10 285 486 1.8E-57 T 06-07-2017 CDO28_RS32875 29e2fdff85e20584612020a30479d7c6 517 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 427 5.2E-101 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS12935 381f43ed25414cb389f0c41bccad1588 157 Pfam PF07617 Protein of unknown function (DUF1579) 4 156 6.3E-56 T 06-07-2017 IPR011473 Protein of unknown function DUF1579 CDO28_RS32645 5a763f7e6f53146ee704a11fbfb4c6e1 282 Gene3D G3DSA:1.10.3720.10 4 271 1.4E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32645 5a763f7e6f53146ee704a11fbfb4c6e1 282 SUPERFAMILY SSF161098 4 278 3.14E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32645 5a763f7e6f53146ee704a11fbfb4c6e1 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 277 8.8E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24110 b762dff8dc9d63d51ff19f603ad1cc3a 284 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 5 256 5.8E-78 T 06-07-2017 IPR014148 P-type conjugative transfer protein VirB9 CDO28_RS24110 b762dff8dc9d63d51ff19f603ad1cc3a 284 Pfam PF03524 Conjugal transfer protein 31 254 2.1E-59 T 06-07-2017 IPR010258 Conjugal transfer, TrbG/VirB9/CagX CDO28_RS00590 1e6be473a77761e32196e13167184df7 225 Gene3D G3DSA:3.40.50.1820 3 215 3.5E-65 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00590 1e6be473a77761e32196e13167184df7 225 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 17 138 6.1E-9 T 06-07-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CDO28_RS00590 1e6be473a77761e32196e13167184df7 225 SUPERFAMILY SSF53474 4 213 2.63E-52 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS02770 23f23ffab01755dcade1b7117b91fd62 263 Gene3D G3DSA:3.60.10.10 1 258 2.6E-77 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS02770 23f23ffab01755dcade1b7117b91fd62 263 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 258 2.7E-69 T 06-07-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CDO28_RS02770 23f23ffab01755dcade1b7117b91fd62 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 251 1.5E-24 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS02770 23f23ffab01755dcade1b7117b91fd62 263 SUPERFAMILY SSF56219 1 259 3.01E-82 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS02770 23f23ffab01755dcade1b7117b91fd62 263 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 258 3.8E-74 T 06-07-2017 CDO28_RS23330 4b69201d17c869627f99ea5ed977de2b 79 Pfam PF06412 Conjugal transfer protein TraD 3 61 1.1E-17 T 06-07-2017 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 CDO28_RS28965 c01ec7387b23e26943c0fb58600ffd7a 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 318 1.1E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS32125 910fd838e05bf6c90ded7fc3e8807191 333 Pfam PF13407 Periplasmic binding protein domain 32 288 2.2E-53 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS32125 910fd838e05bf6c90ded7fc3e8807191 333 Gene3D G3DSA:3.40.50.2300 150 280 2.8E-29 T 06-07-2017 CDO28_RS32125 910fd838e05bf6c90ded7fc3e8807191 333 SUPERFAMILY SSF53822 29 333 8.24E-68 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS32125 910fd838e05bf6c90ded7fc3e8807191 333 Gene3D G3DSA:3.40.50.2300 31 149 2.2E-23 T 06-07-2017 CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 SMART SM00825 Beta-ketoacyl synthase 4 406 8.1E-12 T 06-07-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 360 1.7E-28 T 06-07-2017 IPR014031 Beta-ketoacyl synthase, C-terminal CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 SUPERFAMILY SSF53901 214 404 3.0E-59 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 SUPERFAMILY SSF53901 1 252 3.29E-63 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 245 2.0E-39 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 Gene3D G3DSA:3.40.47.10 6 258 2.3E-58 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 06-07-2017 IPR018201 Beta-ketoacyl synthase, active site CDO28_RS09350 2c8988cd069d55160893cf64c669a69a 406 Gene3D G3DSA:3.40.47.10 262 405 9.5E-47 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF51120 417 558 3.87E-20 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF51120 235 380 9.42E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 426 443 0.0056 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 622 639 0.22 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 780 796 0.057 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 706 722 0.011 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 979 993 0.85 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 515 531 4.3 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 587 603 31.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 480 495 0.0037 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 605 621 2.7 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 324 340 2.4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 497 513 0.0059 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 995 1011 0.58 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF51120 622 742 3.14E-16 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 711 729 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF51120 560 654 1.01E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 PRINTS PR00313 NodO calcium binding signature 506 514 1.1E-10 T 06-07-2017 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 PRINTS PR00313 NodO calcium binding signature 494 505 1.1E-10 T 06-07-2017 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 PRINTS PR00313 NodO calcium binding signature 596 604 1.1E-10 T 06-07-2017 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 PRINTS PR00313 NodO calcium binding signature 632 641 1.1E-10 T 06-07-2017 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 982 1000 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF55486 3 215 5.31E-34 T 06-07-2017 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF08548 Peptidase M10 serralysin C terminal 236 363 6.8E-12 T 06-07-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:2.150.10.10 975 1052 7.1E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:2.150.10.10 688 795 7.1E-25 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:2.150.10.10 424 537 4.3E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:2.150.10.10 239 380 7.0E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:2.150.10.10 566 653 6.2E-13 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Gene3D G3DSA:3.40.390.10 61 216 3.5E-18 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 493 511 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 SUPERFAMILY SSF51120 909 1109 4.06E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 867 937 1.2E-10 T 06-07-2017 IPR007280 Peptidase, C-terminal, archaeal/bacterial CDO28_RS27650 c1e0546b6835448c1ca529423f0374fc 1112 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 484 502 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 SUPERFAMILY SSF51905 181 316 2.07E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 SUPERFAMILY SSF51905 6 126 2.07E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 Gene3D G3DSA:3.50.50.60 27 123 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 Gene3D G3DSA:3.50.50.60 177 257 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 Gene3D G3DSA:3.50.50.60 348 405 5.2E-47 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07105 206182f8aa8626c377f167ebb65bd90b 428 Pfam PF01266 FAD dependent oxidoreductase 34 385 2.1E-51 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS11755 b76edd7151274bdad936abac7ef1bc28 282 Gene3D G3DSA:1.10.3720.10 13 269 1.3E-59 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11755 b76edd7151274bdad936abac7ef1bc28 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 274 1.8E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11755 b76edd7151274bdad936abac7ef1bc28 282 SUPERFAMILY SSF161098 14 281 5.98E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 19 316 35.669 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 Pfam PF01795 MraW methylase family 17 312 3.0E-95 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 Gene3D G3DSA:1.10.150.170 120 223 6.8E-35 T 06-07-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 SUPERFAMILY SSF53335 19 121 3.18E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 SUPERFAMILY SSF53335 221 315 3.18E-47 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 PIRSF PIRSF004486 16 317 5.2E-99 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 18 312 7.4E-90 T 06-07-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 SUPERFAMILY SSF81799 122 221 1.57E-32 T 06-07-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 Gene3D G3DSA:3.40.50.150 19 118 3.3E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16355 aa8640d3ef9041cef40474e1c34fc43c 341 Gene3D G3DSA:3.40.50.150 224 317 3.3E-48 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS29610 797d1289e627e8822b4ac97bf5a60e16 327 SUPERFAMILY SSF51735 1 321 6.15E-43 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29610 797d1289e627e8822b4ac97bf5a60e16 327 Gene3D G3DSA:3.40.50.720 1 184 3.4E-27 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29610 797d1289e627e8822b4ac97bf5a60e16 327 Gene3D G3DSA:3.90.25.10 185 304 2.5E-37 T 06-07-2017 CDO28_RS29610 797d1289e627e8822b4ac97bf5a60e16 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 208 9.9E-21 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 Gene3D G3DSA:2.30.40.10 270 364 8.5E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 SUPERFAMILY SSF51338 16 73 2.88E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 SUPERFAMILY SSF51338 326 368 2.88E-18 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 Pfam PF01979 Amidohydrolase family 242 356 8.5E-18 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 SUPERFAMILY SSF51556 73 327 2.04E-19 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 Hamap MF_01518 Adenine deaminase [ade]. 19 584 32.34 T 06-07-2017 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 Gene3D G3DSA:2.30.40.10 16 126 3.7E-16 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS25240 e86cc0308ad07f4b3a984506d434b163 600 Pfam PF13382 Adenine deaminase C-terminal domain 417 578 1.4E-49 T 06-07-2017 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.4E-21 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 SUPERFAMILY SSF46785 2 110 8.88E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 Gene3D G3DSA:3.40.190.10 161 262 1.7E-15 T 06-07-2017 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 SUPERFAMILY SSF53850 88 294 1.03E-39 T 06-07-2017 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 Pfam PF03466 LysR substrate binding domain 88 294 4.8E-36 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 Gene3D G3DSA:3.40.190.10 91 129 7.4E-5 T 06-07-2017 CDO28_RS20520 54bf1dc268010aeb93b45966b1b6a992 295 Gene3D G3DSA:1.10.10.10 3 85 8.9E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12525 c0fcd4dfa0a6cf0b95e31166db9f9873 270 Pfam PF02525 Flavodoxin-like fold 1 214 2.3E-55 T 06-07-2017 IPR003680 Flavodoxin-like fold CDO28_RS12525 c0fcd4dfa0a6cf0b95e31166db9f9873 270 SUPERFAMILY SSF52218 1 243 5.28E-71 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS12525 c0fcd4dfa0a6cf0b95e31166db9f9873 270 Gene3D G3DSA:3.40.50.360 1 234 5.0E-71 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 5.8E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.0E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 Gene3D G3DSA:3.40.50.720 10 245 7.7E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 243 3.4E-62 T 06-07-2017 CDO28_RS23550 29d9b4a02d09a89f87cfe0169ac9f15c 247 SUPERFAMILY SSF51735 12 246 1.93E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13755 5ae8d67eb7225086016e4a2cc07737c1 93 Pfam PF01722 BolA-like protein 11 89 6.6E-29 T 06-07-2017 IPR002634 BolA protein CDO28_RS13755 5ae8d67eb7225086016e4a2cc07737c1 93 SUPERFAMILY SSF82657 2 92 4.71E-24 T 06-07-2017 IPR002634 BolA protein CDO28_RS13755 5ae8d67eb7225086016e4a2cc07737c1 93 PIRSF PIRSF003113 1 93 1.2E-28 T 06-07-2017 IPR002634 BolA protein CDO28_RS13755 5ae8d67eb7225086016e4a2cc07737c1 93 Gene3D G3DSA:3.30.70.1500 2 82 3.4E-28 T 06-07-2017 CDO28_RS26965 c613cbd2149375b773be7cc494e57399 417 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 24 379 1.2E-92 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS03015 8ce82f7837c8c11afb2e47b746232bd3 166 Pfam PF06073 Bacterial protein of unknown function (DUF934) 51 152 3.6E-34 T 06-07-2017 IPR008318 Uncharacterised conserved protein UCP030820 CDO28_RS03015 8ce82f7837c8c11afb2e47b746232bd3 166 PIRSF PIRSF030820 1 166 3.8E-65 T 06-07-2017 IPR008318 Uncharacterised conserved protein UCP030820 CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 Gene3D G3DSA:3.40.50.2300 140 254 3.0E-22 T 06-07-2017 CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 PIRSF PIRSF036400 1 264 7.1E-146 T 06-07-2017 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 Pfam PF00072 Response regulator receiver domain 142 246 1.4E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 SUPERFAMILY SSF52172 142 254 4.7E-22 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 SMART SM00448 140 250 4.6E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS15025 7c0c8674a033aaa2353047f08cdf7259 264 Gene3D G3DSA:1.10.10.10 89 138 6.5E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 196 423 8.3E-77 T 06-07-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Gene3D G3DSA:3.30.559.10 187 422 8.8E-80 T 06-07-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Gene3D G3DSA:4.10.320.10 137 183 7.4E-17 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Pfam PF02817 e3 binding domain 139 173 7.0E-14 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Gene3D G3DSA:2.40.50.100 5 94 2.2E-24 T 06-07-2017 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 06-07-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 SUPERFAMILY SSF47005 137 177 6.8E-11 T 06-07-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 SUPERFAMILY SSF52777 184 423 1.38E-77 T 06-07-2017 CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 SUPERFAMILY SSF51230 4 95 5.5E-25 T 06-07-2017 IPR011053 Single hybrid motif CDO28_RS12430 e47dbf1f1e36ce0363d6532eac100418 426 Pfam PF00364 Biotin-requiring enzyme 6 77 3.9E-18 T 06-07-2017 IPR000089 Biotin/lipoyl attachment CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Pfam PF00501 AMP-binding enzyme 68 506 1.4E-78 T 06-07-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 SUPERFAMILY SSF56801 5 628 2.88E-150 T 06-07-2017 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 5 59 9.7E-16 T 06-07-2017 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Gene3D G3DSA:3.40.50.980 247 406 2.8E-26 T 06-07-2017 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Gene3D G3DSA:3.40.50.980 54 246 8.6E-36 T 06-07-2017 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Pfam PF13193 AMP-binding enzyme C-terminal domain 516 594 2.9E-22 T 06-07-2017 IPR025110 AMP-binding enzyme C-terminal domain CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Gene3D G3DSA:2.30.38.10 423 499 6.9E-11 T 06-07-2017 CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 ProSitePatterns PS00455 Putative AMP-binding domain signature. 242 253 - T 06-07-2017 IPR020845 AMP-binding, conserved site CDO28_RS10695 81596dd820e6ca6a4b0b9927a06d0cf9 635 Gene3D G3DSA:3.30.300.30 502 634 5.6E-21 T 06-07-2017 CDO28_RS26590 cf6dde06c27ca8022ef8af27bd65e266 404 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 225 360 2.5E-9 T 06-07-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CDO28_RS26590 cf6dde06c27ca8022ef8af27bd65e266 404 Gene3D G3DSA:3.40.50.2000 205 360 8.2E-17 T 06-07-2017 CDO28_RS26590 cf6dde06c27ca8022ef8af27bd65e266 404 SUPERFAMILY SSF53756 9 361 1.99E-15 T 06-07-2017 CDO28_RS26590 cf6dde06c27ca8022ef8af27bd65e266 404 PIRSF PIRSF017085 1 400 7.8E-170 T 06-07-2017 IPR016683 Glycosyl transferase, family 28, RedA, predicted CDO28_RS22435 113a0291b749de048bd91cf0fa914a4d 115 Pfam PF05717 IS66 Orf2 like protein 9 105 5.4E-38 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS22960 54aa1505d012fe325e97dbf1dd726778 98 Gene3D G3DSA:3.30.70.20 44 79 6.2E-6 T 06-07-2017 CDO28_RS22960 54aa1505d012fe325e97dbf1dd726778 98 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 42 92 4.3E-7 T 06-07-2017 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 Reactome: R-HSA-611105 CDO28_RS22960 54aa1505d012fe325e97dbf1dd726778 98 PIRSF PIRSF036548 3 98 1.0E-45 T 06-07-2017 IPR012206 Ferredoxin-like, FixX GO:0005506 CDO28_RS22960 54aa1505d012fe325e97dbf1dd726778 98 SUPERFAMILY SSF54862 43 96 5.48E-11 T 06-07-2017 CDO28_RS22960 54aa1505d012fe325e97dbf1dd726778 98 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 66 77 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 5 326 4.3E-129 T 06-07-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 SUPERFAMILY SSF51735 4 323 2.47E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 Gene3D G3DSA:3.40.50.720 2 171 1.7E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 Gene3D G3DSA:3.90.25.10 256 326 1.4E-42 T 06-07-2017 CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 Gene3D G3DSA:3.90.25.10 172 224 1.4E-42 T 06-07-2017 CDO28_RS28075 b26909225d5d547461b4344c2bcdfad9 328 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 314 2.4E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 Gene3D G3DSA:3.30.9.10 151 299 1.2E-68 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.2E-26 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.2E-26 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.2E-26 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.2E-26 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 SUPERFAMILY SSF51905 274 389 4.75E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 SUPERFAMILY SSF51905 1 172 4.75E-53 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 Pfam PF01494 FAD binding domain 2 343 5.8E-94 T 06-07-2017 IPR002938 FAD-binding domain GO:0071949 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 SUPERFAMILY SSF54373 175 275 1.22E-46 T 06-07-2017 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 390 8.9E-206 T 06-07-2017 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 Gene3D G3DSA:3.40.50.720 2 54 9.4E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30200 b9d05e33a5588149b24aacbc8af65913 390 Gene3D G3DSA:3.40.50.720 104 150 9.4E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10350 1ba9f7735aba7845a9e7cb293a5e0914 173 SUPERFAMILY SSF55729 6 166 6.53E-39 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS10350 1ba9f7735aba7845a9e7cb293a5e0914 173 Gene3D G3DSA:3.40.630.30 6 171 6.8E-40 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS10350 1ba9f7735aba7845a9e7cb293a5e0914 173 SMART SM01006 11 58 6.8E-8 T 06-07-2017 IPR019432 Siderophore biosynthesis protein, conserved domain CDO28_RS10350 1ba9f7735aba7845a9e7cb293a5e0914 173 Pfam PF13523 Acetyltransferase (GNAT) domain 15 152 6.4E-29 T 06-07-2017 CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 SUPERFAMILY SSF52821 103 238 1.65E-30 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 SMART SM00450 126 227 2.4E-20 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 Hamap MF_00469 UPF0176 protein YceA [yceA]. 15 267 44.754 T 06-07-2017 IPR020936 Uncharacterised protein family UPF0176 CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 Pfam PF00581 Rhodanese-like domain 128 223 2.9E-8 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 SUPERFAMILY SSF48695 216 291 9.66E-6 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS12670 9a598f762ce6566ffb94ec175680cf2f 315 Gene3D G3DSA:3.40.250.10 117 239 1.7E-40 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS04775 c37cbee146ef3e7fe08b483c0bd13f69 295 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 3 295 5.6E-65 T 06-07-2017 IPR005229 Conserved hypothetical protein CHP00255 CDO28_RS04775 c37cbee146ef3e7fe08b483c0bd13f69 295 Pfam PF03755 YicC-like family, N-terminal region 3 158 3.2E-36 T 06-07-2017 IPR013527 YicC-like, N-terminal CDO28_RS04775 c37cbee146ef3e7fe08b483c0bd13f69 295 Pfam PF08340 Domain of unknown function (DUF1732) 212 295 6.3E-33 T 06-07-2017 IPR013551 Domain of unknown function DUF1732 CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 Gene3D G3DSA:3.40.50.720 1 142 2.0E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 3.2E-20 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 Gene3D G3DSA:3.30.360.10 143 254 2.4E-13 T 06-07-2017 CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 Gene3D G3DSA:3.30.360.10 297 343 2.4E-13 T 06-07-2017 CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 SUPERFAMILY SSF55347 129 311 8.94E-22 T 06-07-2017 CDO28_RS19230 402a0f6ebeef12facfb8e87e90422f45 358 SUPERFAMILY SSF51735 5 155 4.23E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 Pfam PF07729 FCD domain 95 218 2.5E-25 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 85 4.6E-18 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 Gene3D G3DSA:1.20.120.530 88 227 1.3E-28 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.0E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.0E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 SUPERFAMILY SSF46785 17 110 2.99E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 Gene3D G3DSA:1.10.10.10 15 86 8.4E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 SMART SM00895 95 219 6.0E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 SMART SM00345 27 85 3.0E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS30085 cd66a3c9c91e5badf340eba58d19cf83 228 SUPERFAMILY SSF48008 91 227 1.02E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10180 147186ab2e15f18d485e40b55150f658 92 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 4 84 1.2E-36 T 06-07-2017 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS10180 147186ab2e15f18d485e40b55150f658 92 Pfam PF04267 Sarcosine oxidase, delta subunit family 5 80 3.2E-30 T 06-07-2017 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12180 72ec7536758e23708bece059039ba282 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 289 2.1E-35 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS33070 8255daba267456927949668870db3ba5 353 SUPERFAMILY SSF52738 4 188 9.15E-54 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS33070 8255daba267456927949668870db3ba5 353 Pfam PF01339 CheB methylesterase 7 181 1.3E-48 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS33070 8255daba267456927949668870db3ba5 353 Gene3D G3DSA:3.40.50.180 3 187 5.9E-59 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS33070 8255daba267456927949668870db3ba5 353 PIRSF PIRSF036461 1 346 3.5E-182 T 06-07-2017 IPR011247 Chemotaxis protein-glutamate methylesterase CDO28_RS16350 dbec3d747c0b1a1a2672682566343576 146 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 12 123 1.0E-10 T 06-07-2017 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CDO28_RS16350 dbec3d747c0b1a1a2672682566343576 146 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 146 32.315 T 06-07-2017 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CDO28_RS16350 dbec3d747c0b1a1a2672682566343576 146 Pfam PF02381 MraZ protein, putative antitoxin-like 84 137 4.7E-7 T 06-07-2017 IPR020603 MraZ domain CDO28_RS16350 dbec3d747c0b1a1a2672682566343576 146 SUPERFAMILY SSF89447 1 136 2.04E-30 T 06-07-2017 CDO28_RS30380 058b026fedb66f17e8eb7070620e8036 65 Pfam PF02597 ThiS family 7 65 8.7E-14 T 06-07-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 CDO28_RS30380 058b026fedb66f17e8eb7070620e8036 65 Gene3D G3DSA:3.10.20.30 1 65 1.3E-21 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS30380 058b026fedb66f17e8eb7070620e8036 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 7.1E-19 T 06-07-2017 IPR010035 ThiS, thiamine-biosynthesis CDO28_RS30380 058b026fedb66f17e8eb7070620e8036 65 SUPERFAMILY SSF54285 2 64 1.7E-16 T 06-07-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Gene3D G3DSA:3.40.50.10440 373 545 5.8E-61 T 06-07-2017 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 SUPERFAMILY SSF100950 87 335 2.18E-67 T 06-07-2017 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Pfam PF08281 Sigma-70, region 4 40 72 6.8E-8 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 SUPERFAMILY SSF88659 35 72 1.26E-7 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Gene3D G3DSA:3.30.1180.20 549 693 3.1E-50 T 06-07-2017 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Gene3D G3DSA:3.40.50.1360 79 336 8.1E-73 T 06-07-2017 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Pfam PF04198 Putative sugar-binding domain 86 334 1.6E-65 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Gene3D G3DSA:1.10.10.10 39 72 2.2E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 Pfam PF02733 Dak1 domain 380 690 3.5E-111 T 06-07-2017 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CDO28_RS32105 64d1d5f0ca276ed2d3b5c40a751b36db 695 SUPERFAMILY SSF82549 363 693 4.97E-110 T 06-07-2017 CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 Gene3D G3DSA:3.40.640.10 107 231 9.7E-33 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 Pfam PF06988 NifT/FixU protein 1 63 7.4E-24 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 SUPERFAMILY SSF159203 1 66 4.71E-22 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 66 2.9E-27 T 06-07-2017 IPR009727 NifT/FixU GO:0009399 CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 Gene3D G3DSA:2.40.50.240 1 66 2.1E-30 T 06-07-2017 IPR024044 NifT/FixU barrel-like domain CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 SUPERFAMILY SSF53383 106 231 9.22E-35 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS22290 04bc994f9cf29efccd99ea29c167e642 231 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 114 231 8.1E-32 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS26210 971fc941267753edf8d0a5f3f7b9ad7a 281 SUPERFAMILY SSF56529 62 278 6.93E-83 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS26210 971fc941267753edf8d0a5f3f7b9ad7a 281 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 278 3.7E-73 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS26210 971fc941267753edf8d0a5f3f7b9ad7a 281 Gene3D G3DSA:3.90.850.10 66 279 6.7E-88 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS27795 e95888d19ba38b36e1a57155e62077cd 333 Gene3D G3DSA:3.40.190.10 23 111 1.0E-23 T 06-07-2017 CDO28_RS27795 e95888d19ba38b36e1a57155e62077cd 333 Gene3D G3DSA:3.40.190.10 255 323 1.0E-23 T 06-07-2017 CDO28_RS27795 e95888d19ba38b36e1a57155e62077cd 333 SUPERFAMILY SSF53850 22 328 6.08E-75 T 06-07-2017 CDO28_RS27795 e95888d19ba38b36e1a57155e62077cd 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 312 3.9E-63 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS27795 e95888d19ba38b36e1a57155e62077cd 333 Gene3D G3DSA:3.40.190.100 114 244 9.5E-31 T 06-07-2017 CDO28_RS25215 57cffc7450b17a3cb2cf8d1aaab5f240 142 Pfam PF05443 ROS/MUCR transcriptional regulator protein 11 132 7.2E-48 T 06-07-2017 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 CDO28_RS01410 6b30a36075a81841b1140e03dc0a86bd 115 Pfam PF15586 Immunity protein 8 15 111 1.2E-15 T 06-07-2017 IPR028964 Immunity protein 8 CDO28_RS29355 d3849e0626977988e6de13f308923d5e 355 Gene3D G3DSA:3.40.50.720 150 304 6.3E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29355 d3849e0626977988e6de13f308923d5e 355 Gene3D G3DSA:3.30.1780.10 11 149 3.3E-42 T 06-07-2017 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 CDO28_RS29355 d3849e0626977988e6de13f308923d5e 355 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 18 320 2.1E-122 T 06-07-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CDO28_RS29355 d3849e0626977988e6de13f308923d5e 355 SUPERFAMILY SSF51735 10 347 7.78E-100 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 SUPERFAMILY SSF55424 318 386 1.46E-13 T 06-07-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Gene3D G3DSA:3.50.50.60 112 244 2.7E-54 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 SUPERFAMILY SSF51905 109 243 2.81E-37 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 115 3.0E-10 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Gene3D G3DSA:3.90.760.10 318 386 8.4E-18 T 06-07-2017 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 320 385 6.4E-14 T 06-07-2017 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Gene3D G3DSA:3.50.50.60 245 314 7.4E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 Gene3D G3DSA:3.50.50.60 1 110 7.4E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 SUPERFAMILY SSF51905 1 102 5.05E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25910 59253a356285250095c65d2e37c4852e 389 SUPERFAMILY SSF51905 239 314 5.05E-24 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 Gene3D G3DSA:3.50.50.60 149 226 2.2E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 Gene3D G3DSA:3.50.50.60 13 95 2.2E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 Pfam PF01266 FAD dependent oxidoreductase 14 402 8.7E-72 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 PRINTS PR00757 Flavin-containing amine oxidase signature 193 215 3.1E-5 T 06-07-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 PRINTS PR00757 Flavin-containing amine oxidase signature 14 33 3.1E-5 T 06-07-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 Gene3D G3DSA:3.30.9.10 98 148 3.7E-4 T 06-07-2017 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 Gene3D G3DSA:3.30.9.10 228 238 3.7E-4 T 06-07-2017 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 SUPERFAMILY SSF51905 13 227 1.47E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31105 5c23d86341bd28dc43dd8ed83a03e61b 426 SUPERFAMILY SSF51905 259 294 1.47E-49 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS21200 607d4f20b653d3c9a9e0bdaf9f0a4fdb 90 Gene3D G3DSA:1.25.40.10 3 56 7.9E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS21200 607d4f20b653d3c9a9e0bdaf9f0a4fdb 90 SUPERFAMILY SSF48452 2 55 2.8E-6 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS07565 e56cb8a5743f62e3e71050da0fd9654f 105 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 26 103 8.7E-27 T 06-07-2017 IPR025528 BrnA antitoxin of type II toxin-antitoxin system CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 Pfam PF01743 Poly A polymerase head domain 30 151 2.8E-24 T 06-07-2017 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 187 239 1.4E-9 T 06-07-2017 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 Gene3D G3DSA:1.10.3090.10 150 383 1.8E-45 T 06-07-2017 CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 SUPERFAMILY SSF81891 149 417 1.57E-49 T 06-07-2017 CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 SUPERFAMILY SSF81301 8 148 1.53E-39 T 06-07-2017 CDO28_RS15410 4567c2dbfc3ffc9d7aac041b6e317339 419 Gene3D G3DSA:3.30.460.10 12 147 3.8E-39 T 06-07-2017 CDO28_RS20025 9f1d49565e261846dc616e755d4b3fc0 107 Gene3D G3DSA:1.10.260.40 51 106 7.3E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20025 9f1d49565e261846dc616e755d4b3fc0 107 SUPERFAMILY SSF47413 50 106 8.57E-11 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS20025 9f1d49565e261846dc616e755d4b3fc0 107 Pfam PF01381 Helix-turn-helix 52 96 8.8E-7 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Gene3D G3DSA:1.10.8.10 111 166 7.2E-25 T 06-07-2017 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Gene3D G3DSA:1.10.8.10 205 235 7.2E-25 T 06-07-2017 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 435 42.611 T 06-07-2017 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 SMART SM00382 49 324 1.8E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 327 398 1.1E-8 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Gene3D G3DSA:1.10.8.60 326 435 1.2E-36 T 06-07-2017 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 5 435 2.2E-186 T 06-07-2017 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 SMART SM01086 327 426 9.3E-24 T 06-07-2017 IPR019489 Clp ATPase, C-terminal CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Gene3D G3DSA:3.40.50.300 5 110 2.1E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Gene3D G3DSA:3.40.50.300 237 323 2.1E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Pfam PF07724 AAA domain (Cdc48 subfamily) 197 321 8.3E-38 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 101 1.6E-5 T 06-07-2017 IPR003959 ATPase, AAA-type, core GO:0005524 CDO28_RS10345 4a0977e4425e656af37fb47303f039c0 435 SUPERFAMILY SSF52540 5 433 1.94E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11015 68deee79e32a9bdfcba1b4122b5cfee1 61 Pfam PF01783 Ribosomal L32p protein family 2 56 1.3E-22 T 06-07-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11015 68deee79e32a9bdfcba1b4122b5cfee1 61 SUPERFAMILY SSF57829 1 55 2.2E-20 T 06-07-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 CDO28_RS11015 68deee79e32a9bdfcba1b4122b5cfee1 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.2E-23 T 06-07-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS11015 68deee79e32a9bdfcba1b4122b5cfee1 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.587 T 06-07-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS30535 266b1c53d2e4ccd41e0bb35cdc32ba66 693 SUPERFAMILY SSF53850 103 655 4.71E-74 T 06-07-2017 CDO28_RS30535 266b1c53d2e4ccd41e0bb35cdc32ba66 693 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 154 556 4.6E-63 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS30535 266b1c53d2e4ccd41e0bb35cdc32ba66 693 Gene3D G3DSA:3.90.76.10 142 260 3.1E-25 T 06-07-2017 CDO28_RS30535 266b1c53d2e4ccd41e0bb35cdc32ba66 693 Gene3D G3DSA:3.40.190.10 261 415 2.4E-11 T 06-07-2017 CDO28_RS30535 266b1c53d2e4ccd41e0bb35cdc32ba66 693 Gene3D G3DSA:3.10.105.10 416 622 1.3E-24 T 06-07-2017 CDO28_RS23530 dba5379051b7d02fc2cb91933752575e 148 SUPERFAMILY SSF51735 27 96 2.27E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23530 dba5379051b7d02fc2cb91933752575e 148 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 33 61 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS23530 dba5379051b7d02fc2cb91933752575e 148 Gene3D G3DSA:3.40.50.720 26 82 2.9E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23530 dba5379051b7d02fc2cb91933752575e 148 Pfam PF00106 short chain dehydrogenase 26 83 6.5E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 Gene3D G3DSA:2.60.40.420 131 283 2.0E-37 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 Pfam PF06481 COX Aromatic Rich Motif 245 290 3.8E-19 T 06-07-2017 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 158 226 2.1E-6 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 Gene3D G3DSA:1.10.287.90 25 111 7.3E-34 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 SUPERFAMILY SSF81464 16 115 2.13E-22 T 06-07-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 12 245 1.9E-109 T 06-07-2017 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CDO28_RS29315 b75829a6817947d02ddf1cd452464f3a 386 SUPERFAMILY SSF49503 129 286 1.93E-48 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 2.0E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 2.0E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 SUPERFAMILY SSF46785 27 94 4.77E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 SMART SM00345 31 90 6.8E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 SUPERFAMILY SSF48008 113 240 9.68E-25 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 Gene3D G3DSA:1.20.120.530 111 240 3.6E-28 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 Pfam PF00392 Bacterial regulatory proteins, gntR family 36 90 1.1E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 SMART SM00895 115 241 3.4E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 Pfam PF07729 FCD domain 115 240 1.7E-22 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32460 97762d5519d26f523099e92f02c9764a 269 Gene3D G3DSA:1.10.10.10 29 93 1.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16560 75a9508466669f5475777b12f80853e3 153 Pfam PF00583 Acetyltransferase (GNAT) family 61 140 2.1E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS16560 75a9508466669f5475777b12f80853e3 153 Gene3D G3DSA:3.40.630.30 6 140 2.0E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS16560 75a9508466669f5475777b12f80853e3 153 SUPERFAMILY SSF55729 7 147 8.61E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00050 38bd8f5a1e60510ba4f4e6bf8853e156 227 Gene3D G3DSA:3.40.109.10 17 225 8.4E-50 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS00050 38bd8f5a1e60510ba4f4e6bf8853e156 227 SUPERFAMILY SSF55469 23 225 4.32E-51 T 06-07-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDO28_RS00050 38bd8f5a1e60510ba4f4e6bf8853e156 227 Pfam PF00881 Nitroreductase family 27 193 2.3E-30 T 06-07-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDO28_RS00050 38bd8f5a1e60510ba4f4e6bf8853e156 227 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 15 219 1.1E-90 T 06-07-2017 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 CDO28_RS26030 0ce7e615e05d4e7b4659a3483c68aee1 169 SMART SM00318 24 150 1.0E-20 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS26030 0ce7e615e05d4e7b4659a3483c68aee1 169 Pfam PF00565 Staphylococcal nuclease homologue 44 149 1.4E-11 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS26030 0ce7e615e05d4e7b4659a3483c68aee1 169 SUPERFAMILY SSF50199 31 152 2.09E-29 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS26030 0ce7e615e05d4e7b4659a3483c68aee1 169 Gene3D G3DSA:2.40.50.90 31 122 6.0E-19 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34515 be7540b2ab48e26a1d68dd956c7a15a5 133 Gene3D G3DSA:1.20.5.780 14 54 5.6E-4 T 06-07-2017 CDO28_RS34515 be7540b2ab48e26a1d68dd956c7a15a5 133 Pfam PF05713 Bacterial mobilisation protein (MobC) 72 119 2.3E-7 T 06-07-2017 IPR008687 Bacterial mobilisation CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 Gene3D G3DSA:3.40.50.720 142 273 5.1E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 SUPERFAMILY SSF53223 1 121 2.4E-37 T 06-07-2017 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 4.4E-35 T 06-07-2017 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 290 3.6E-63 T 06-07-2017 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 283 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 206 235 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 264 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 5.1E-75 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 SUPERFAMILY SSF51735 122 290 6.81E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 269 277 - T 06-07-2017 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 Gene3D G3DSA:3.40.192.10 6 141 1.5E-42 T 06-07-2017 CDO28_RS10195 b5938dda5cb7169b1a19a9aaca65e568 306 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 292 35.981 T 06-07-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 Gene3D G3DSA:1.10.10.10 7 144 1.9E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 Pfam PF01047 MarR family 36 93 3.8E-14 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 2.6E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 2.6E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 2.6E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 SMART SM00347 29 129 3.5E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS11305 948666dac5cc77a9d76b36f88f5e3108 159 SUPERFAMILY SSF46785 8 146 4.47E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09255 758a5bf50034527205a7796807199176 390 Pfam PF00665 Integrase core domain 134 254 1.0E-18 T 06-07-2017 IPR001584 Integrase, catalytic core GO:0015074 CDO28_RS09255 758a5bf50034527205a7796807199176 390 Gene3D G3DSA:1.10.10.60 12 60 8.1E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09255 758a5bf50034527205a7796807199176 390 Pfam PF13565 Homeodomain-like domain 41 112 7.6E-12 T 06-07-2017 CDO28_RS09255 758a5bf50034527205a7796807199176 390 SUPERFAMILY SSF46689 11 115 5.02E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS09255 758a5bf50034527205a7796807199176 390 Gene3D G3DSA:3.30.420.10 129 292 6.3E-32 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS09255 758a5bf50034527205a7796807199176 390 SUPERFAMILY SSF53098 129 299 1.14E-30 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Gene3D G3DSA:3.10.290.10 321 416 2.7E-27 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 54 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 6 416 42.915 T 06-07-2017 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 SUPERFAMILY SSF55174 309 414 5.63E-19 T 06-07-2017 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Gene3D G3DSA:3.40.50.620 3 238 4.0E-97 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Pfam PF00579 tRNA synthetases class I (W and Y) 34 328 4.3E-75 T 06-07-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 SUPERFAMILY SSF52374 7 327 3.22E-99 T 06-07-2017 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Gene3D G3DSA:1.10.240.10 239 320 3.4E-36 T 06-07-2017 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 Pfam PF01479 S4 domain 352 396 7.4E-5 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 5.2E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 48 70 5.2E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 5.2E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 5.2E-24 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDO28_RS00575 360bcf119a451ce09e7303e8c4cfc038 417 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 414 6.6E-112 T 06-07-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDO28_RS14620 04b26012f4fe231eb237db4958c0f929 420 Gene3D G3DSA:3.40.190.10 29 153 1.8E-22 T 06-07-2017 CDO28_RS14620 04b26012f4fe231eb237db4958c0f929 420 Gene3D G3DSA:3.40.190.10 154 344 1.5E-49 T 06-07-2017 CDO28_RS14620 04b26012f4fe231eb237db4958c0f929 420 SUPERFAMILY SSF53850 21 411 2.59E-83 T 06-07-2017 CDO28_RS14620 04b26012f4fe231eb237db4958c0f929 420 Pfam PF13416 Bacterial extracellular solute-binding protein 42 348 1.2E-42 T 06-07-2017 CDO28_RS22680 e14a0cc24dd63c8c2cd917aad2dadbf4 547 SUPERFAMILY SSF103473 19 407 7.32E-40 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS22680 e14a0cc24dd63c8c2cd917aad2dadbf4 547 Gene3D G3DSA:1.20.1250.20 31 206 3.6E-18 T 06-07-2017 CDO28_RS22680 e14a0cc24dd63c8c2cd917aad2dadbf4 547 Gene3D G3DSA:1.20.1250.20 239 411 1.6E-12 T 06-07-2017 CDO28_RS22680 e14a0cc24dd63c8c2cd917aad2dadbf4 547 Pfam PF05977 Transmembrane secretion effector 12 531 1.1E-234 T 06-07-2017 IPR010290 Transmembrane secretion effector CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 SMART SM00866 98 237 1.0E-22 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 Gene3D G3DSA:1.10.10.10 7 69 3.1E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 SUPERFAMILY SSF64288 62 240 1.88E-33 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.0E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.0E-8 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 SMART SM00345 15 74 3.1E-17 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 SUPERFAMILY SSF46785 7 78 3.07E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 74 1.6E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 Gene3D G3DSA:3.40.1410.10 70 241 8.2E-34 T 06-07-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CDO28_RS12330 cdb97b108e06402fefc7c9782fc35503 243 Pfam PF07702 UTRA domain 100 236 2.2E-28 T 06-07-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 Gene3D G3DSA:1.10.1040.10 188 282 1.6E-36 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 182 207 - T 06-07-2017 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 4 182 2.7E-63 T 06-07-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 281 8.7E-34 T 06-07-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 SUPERFAMILY SSF48179 184 283 3.06E-34 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 PIRSF PIRSF000105 1 289 1.1E-86 T 06-07-2017 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 Gene3D G3DSA:3.40.50.720 2 187 3.1E-58 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13905 b8ff1f9b9a574746349c89fd551ff916 290 SUPERFAMILY SSF51735 1 184 1.46E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 Pfam PF00576 HIUase/Transthyretin family 11 122 8.3E-37 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 Gene3D G3DSA:2.60.40.180 10 123 2.3E-38 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 ProSitePatterns PS00768 Transthyretin signature 1. 14 29 - T 06-07-2017 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 SUPERFAMILY SSF49472 7 123 7.98E-42 T 06-07-2017 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 10 123 6.5E-41 T 06-07-2017 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 ProSitePatterns PS00769 Transthyretin signature 2. 106 118 - T 06-07-2017 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 PRINTS PR00189 Transthyretin signature 101 123 6.6E-8 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS26690 1a5ff9053ee44133b527eed1e7807387 123 PRINTS PR00189 Transthyretin signature 10 30 6.6E-8 T 06-07-2017 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CDO28_RS22465 999032077cedf0f4ac649214773000b3 311 Pfam PF02567 Phenazine biosynthesis-like protein 32 284 9.1E-40 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS22465 999032077cedf0f4ac649214773000b3 311 PIRSF PIRSF016184 25 291 4.5E-39 T 06-07-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDO28_RS22465 999032077cedf0f4ac649214773000b3 311 Gene3D G3DSA:3.10.310.10 27 146 7.1E-30 T 06-07-2017 CDO28_RS22465 999032077cedf0f4ac649214773000b3 311 Gene3D G3DSA:3.10.310.10 153 282 3.8E-33 T 06-07-2017 CDO28_RS22465 999032077cedf0f4ac649214773000b3 311 SUPERFAMILY SSF54506 27 285 4.11E-57 T 06-07-2017 CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 SUPERFAMILY SSF51735 6 251 4.15E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.1E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.1E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.1E-5 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 9.1E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 Gene3D G3DSA:3.40.50.720 7 251 5.3E-62 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24315 27231b629b236204950b3e0c036f4d64 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 249 2.2E-49 T 06-07-2017 CDO28_RS04170 c824246e4d0b99677421fd334c157e41 430 SUPERFAMILY SSF56300 8 324 2.13E-52 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS04170 c824246e4d0b99677421fd334c157e41 430 Pfam PF00149 Calcineurin-like phosphoesterase 8 206 2.4E-14 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS04170 c824246e4d0b99677421fd334c157e41 430 Gene3D G3DSA:3.60.21.10 7 254 1.8E-44 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS04170 c824246e4d0b99677421fd334c157e41 430 PIRSF PIRSF033091 5 424 6.6E-137 T 06-07-2017 IPR014576 Predicted phosphoesterase, YhaO type CDO28_RS11945 02bf1fce69dde12564722efe753d12fc 301 SUPERFAMILY SSF103481 43 142 3.27E-13 T 06-07-2017 CDO28_RS11945 02bf1fce69dde12564722efe753d12fc 301 SUPERFAMILY SSF103481 191 293 6.93E-13 T 06-07-2017 CDO28_RS11945 02bf1fce69dde12564722efe753d12fc 301 Pfam PF00892 EamA-like transporter family 156 289 3.2E-16 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS11945 02bf1fce69dde12564722efe753d12fc 301 Pfam PF00892 EamA-like transporter family 10 142 1.8E-22 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Gene3D G3DSA:3.40.50.300 4 257 5.1E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Gene3D G3DSA:3.40.50.300 274 517 4.7E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 262 7.7E-6 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 495 533 6.4E-4 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 SUPERFAMILY SSF52540 275 515 1.85E-74 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Pfam PF00005 ABC transporter 26 183 5.5E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 Pfam PF00005 ABC transporter 291 443 1.7E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 SMART SM00382 34 233 2.8E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 SMART SM00382 300 493 4.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31310 f25e046427147dc38114f47a8dd67392 548 SUPERFAMILY SSF52540 5 255 9.12E-71 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31280 2fa02696b1a04dd431ecd80ad8f2ea21 206 SUPERFAMILY SSF52507 9 192 3.53E-62 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS31280 2fa02696b1a04dd431ecd80ad8f2ea21 206 Gene3D G3DSA:3.40.50.1950 9 194 3.7E-78 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS31280 2fa02696b1a04dd431ecd80ad8f2ea21 206 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 9 192 36.555 T 06-07-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 CDO28_RS31280 2fa02696b1a04dd431ecd80ad8f2ea21 206 Pfam PF02441 Flavoprotein 9 133 1.0E-24 T 06-07-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDO28_RS31280 2fa02696b1a04dd431ecd80ad8f2ea21 206 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 10 190 1.9E-71 T 06-07-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 Pfam PF00005 ABC transporter 486 634 1.2E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 Pfam PF00664 ABC transporter transmembrane region 161 415 2.7E-13 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 155 696 1.8E-226 T 06-07-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 Gene3D G3DSA:1.20.1560.10 158 450 8.7E-46 T 06-07-2017 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 Gene3D G3DSA:3.40.50.300 482 698 2.5E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 SUPERFAMILY SSF52540 461 695 4.12E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 SMART SM00382 495 682 7.5E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 ProSitePatterns PS00211 ABC transporters family signature. 607 621 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12370 61a052596d29fef6a4cbf07ff7e32aed 712 SUPERFAMILY SSF90123 157 456 4.19E-46 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS06755 c07c1259b4d41da786b5ddaac88d877f 98 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 19 93 1.0E-26 T 06-07-2017 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 SMART SM00418 8 86 1.1E-7 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 Gene3D G3DSA:1.10.10.10 2 100 3.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 SUPERFAMILY SSF46785 2 93 8.56E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 Pfam PF12840 Helix-turn-helix domain 10 69 1.2E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 2.1E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 2.1E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS19865 f534495d21a4c7d8d2a693d8506185b3 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 2.1E-6 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS09465 4f1d62525221dd18fe56eb47485ca3ce 45 Pfam PF06568 Domain of unknown function (DUF1127) 3 38 7.2E-14 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS08595 c7f492c3e14b6adf1b511eb771e3f767 384 Gene3D G3DSA:3.40.50.150 109 382 2.9E-70 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08595 c7f492c3e14b6adf1b511eb771e3f767 384 SUPERFAMILY SSF53335 84 355 2.94E-56 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS08595 c7f492c3e14b6adf1b511eb771e3f767 384 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 185 293 1.4E-8 T 06-07-2017 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 CDO28_RS04650 344b9cbdf6d81b44d84dd522e34343a1 155 Gene3D G3DSA:3.90.1170.40 5 152 2.4E-46 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS04650 344b9cbdf6d81b44d84dd522e34343a1 155 Pfam PF02391 MoaE protein 10 120 3.0E-31 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS04650 344b9cbdf6d81b44d84dd522e34343a1 155 SUPERFAMILY SSF54690 6 152 1.7E-45 T 06-07-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS12410 b6226775926ccaa4c871da6ef64a4fa5 338 Gene3D G3DSA:3.90.850.10 305 318 3.7E-40 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS12410 b6226775926ccaa4c871da6ef64a4fa5 338 Gene3D G3DSA:3.90.850.10 67 269 3.7E-40 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS12410 b6226775926ccaa4c871da6ef64a4fa5 338 SUPERFAMILY SSF56529 76 333 5.23E-58 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS12410 b6226775926ccaa4c871da6ef64a4fa5 338 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 81 332 1.2E-41 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS23515 3b7a8bac3a2cbba1d5b12f893b5aa0c9 39 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 2 33 4.2E-7 T 06-07-2017 IPR005126 NapC/NirT cytochrome c, N-terminal CDO28_RS23515 3b7a8bac3a2cbba1d5b12f893b5aa0c9 39 SUPERFAMILY SSF48695 2 34 1.31E-6 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 Pfam PF00698 Acyl transferase domain 5 278 8.8E-38 T 06-07-2017 IPR014043 Acyl transferase CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 Gene3D G3DSA:3.40.366.10 2 124 5.0E-68 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 Gene3D G3DSA:3.40.366.10 199 304 5.0E-68 T 06-07-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 314 5.7E-40 T 06-07-2017 IPR020801 Polyketide synthase, acyl transferase domain CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 SUPERFAMILY SSF52151 3 124 2.59E-75 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 SUPERFAMILY SSF52151 192 312 2.59E-75 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 PIRSF PIRSF000446 1 313 7.6E-94 T 06-07-2017 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 292 3.5E-94 T 06-07-2017 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 Gene3D G3DSA:3.30.70.250 127 198 1.3E-28 T 06-07-2017 CDO28_RS04800 bd6030873ad4a11f936c54df723181b2 314 SUPERFAMILY SSF55048 130 199 1.18E-17 T 06-07-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 CDO28_RS17580 3b1193477d43e26ff863c1c0e3a910bf 1275 Pfam PF02514 CobN/Magnesium Chelatase 138 1252 0.0 T 06-07-2017 IPR003672 CobN/magnesium chelatase GO:0009058 CDO28_RS17580 3b1193477d43e26ff863c1c0e3a910bf 1275 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 1 1264 0.0 T 06-07-2017 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 CDO28_RS29695 f3d456f6610945a8f891dba19ea0314c 271 SUPERFAMILY SSF51658 1 254 3.14E-86 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29695 f3d456f6610945a8f891dba19ea0314c 271 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 2.8E-32 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29695 f3d456f6610945a8f891dba19ea0314c 271 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 254 2.1E-116 T 06-07-2017 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 CDO28_RS29695 f3d456f6610945a8f891dba19ea0314c 271 PIRSF PIRSF006241 1 261 7.0E-92 T 06-07-2017 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 CDO28_RS29695 f3d456f6610945a8f891dba19ea0314c 271 Gene3D G3DSA:3.20.20.150 1 254 1.2E-90 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS07680 bda446e0a4fe4c7e1b1affe44bc61a04 199 SUPERFAMILY SSF52499 3 198 5.36E-53 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS07680 bda446e0a4fe4c7e1b1affe44bc61a04 199 Pfam PF00857 Isochorismatase family 5 197 4.7E-33 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS07680 bda446e0a4fe4c7e1b1affe44bc61a04 199 Gene3D G3DSA:3.40.50.850 2 199 3.3E-66 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Gene3D G3DSA:3.30.360.10 349 407 1.2E-53 T 06-07-2017 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Gene3D G3DSA:3.30.360.10 269 317 1.2E-53 T 06-07-2017 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Gene3D G3DSA:3.30.360.10 138 218 1.2E-53 T 06-07-2017 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Gene3D G3DSA:3.40.50.720 2 137 4.3E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 SUPERFAMILY SSF51735 2 161 1.13E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 SUPERFAMILY SSF55347 135 219 5.45E-30 T 06-07-2017 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 SUPERFAMILY SSF55347 268 330 5.45E-30 T 06-07-2017 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 128 7.6E-25 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS09985 ae201587f18f95e407f08a108e3ddf14 433 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 141 210 2.9E-16 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS09030 c567c4179806e7c40519d9759cc6b2fb 116 SUPERFAMILY SSF52833 2 113 9.27E-38 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS09030 c567c4179806e7c40519d9759cc6b2fb 116 Pfam PF03960 ArsC family 6 112 1.6E-20 T 06-07-2017 IPR006660 Arsenate reductase-like CDO28_RS09030 c567c4179806e7c40519d9759cc6b2fb 116 Gene3D G3DSA:3.40.30.10 2 113 7.7E-46 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS09030 c567c4179806e7c40519d9759cc6b2fb 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 112 1.1E-31 T 06-07-2017 IPR006504 Transcriptional regulator Spx/MgsR CDO28_RS07835 3ce35986e59b3d6d3e4e5ed88e3e79f1 455 Pfam PF01554 MatE 256 407 1.2E-14 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS07835 3ce35986e59b3d6d3e4e5ed88e3e79f1 455 Pfam PF01554 MatE 32 192 5.0E-18 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS07835 3ce35986e59b3d6d3e4e5ed88e3e79f1 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 32 425 4.2E-68 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 PIRSF PIRSF002825 1 343 6.5E-93 T 06-07-2017 IPR026045 Ferric binding protein CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 Gene3D G3DSA:3.40.190.10 129 273 1.1E-53 T 06-07-2017 CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 Gene3D G3DSA:3.40.190.10 274 330 1.6E-34 T 06-07-2017 CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 Gene3D G3DSA:3.40.190.10 8 124 1.6E-34 T 06-07-2017 CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 Pfam PF13343 Bacterial extracellular solute-binding protein 75 300 1.2E-24 T 06-07-2017 CDO28_RS06975 673f61c5f15d8acf2b7b9504679a89b2 347 SUPERFAMILY SSF53850 26 338 2.17E-83 T 06-07-2017 CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 238 2.1E-51 T 06-07-2017 CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.4E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 SUPERFAMILY SSF51735 5 240 5.3E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.8E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14550 8f9aac99fe2b02bc056f88233be70742 241 Gene3D G3DSA:3.40.50.720 2 239 2.0E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13635 daa3fb651eee39fa007145284c7e56e9 461 SUPERFAMILY SSF51338 388 452 2.33E-7 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS13635 daa3fb651eee39fa007145284c7e56e9 461 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 7 461 1.7E-223 T 06-07-2017 IPR010252 Formiminoglutamate deiminase CDO28_RS13635 daa3fb651eee39fa007145284c7e56e9 461 Gene3D G3DSA:3.20.20.140 59 403 9.3E-68 T 06-07-2017 CDO28_RS13635 daa3fb651eee39fa007145284c7e56e9 461 SUPERFAMILY SSF51556 56 379 3.06E-70 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS13635 daa3fb651eee39fa007145284c7e56e9 461 Pfam PF01979 Amidohydrolase family 54 436 4.4E-30 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 SUPERFAMILY SSF48179 166 293 8.73E-38 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 Gene3D G3DSA:3.40.50.720 2 164 1.2E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 SUPERFAMILY SSF51735 4 163 6.34E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 287 1.1E-39 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 PIRSF PIRSF000103 1 294 1.2E-68 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 Gene3D G3DSA:1.10.1040.10 166 294 2.4E-47 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 162 1.3E-42 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS29635 fa27973066d83906226728ef639dfb6a 301 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 06-07-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS02760 34edda08de46ffbc6cfd9ff8c3331e53 109 Gene3D G3DSA:2.60.300.12 4 97 1.6E-32 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS02760 34edda08de46ffbc6cfd9ff8c3331e53 109 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 90 107 - T 06-07-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site CDO28_RS02760 34edda08de46ffbc6cfd9ff8c3331e53 109 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 108 1.8E-36 T 06-07-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 CDO28_RS02760 34edda08de46ffbc6cfd9ff8c3331e53 109 SUPERFAMILY SSF89360 4 97 2.35E-30 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS02760 34edda08de46ffbc6cfd9ff8c3331e53 109 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 104 1.2E-19 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 Gene3D G3DSA:3.90.1550.10 33 245 4.6E-68 T 06-07-2017 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 104 156 2.0E-23 T 06-07-2017 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 99 114 - T 06-07-2017 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 SUPERFAMILY SSF55681 36 246 1.99E-65 T 06-07-2017 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 PIRSF PIRSF016262 31 252 9.0E-55 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 Pfam PF03099 Biotin/lipoate A/B protein ligase family 92 200 2.2E-6 T 06-07-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 62 244 1.9E-45 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03425 b4048592c47c15ab57f4b552e81916f8 252 Hamap MF_00013 Octanoyltransferase [lipB]. 32 247 36.445 T 06-07-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 SUPERFAMILY SSF55874 310 402 2.49E-16 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 Pfam PF07730 Histidine kinase 206 268 4.1E-5 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 315 362 7.8E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 Gene3D G3DSA:3.30.450.40 14 166 1.1E-10 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 Gene3D G3DSA:3.30.565.10 282 379 3.5E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 SMART SM00387 311 404 6.7E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS21285 300eeb48b0b087d1948691aa095823f6 415 SUPERFAMILY SSF55781 9 162 7.61E-11 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS05915 d59e7fc6dabebc18a055f9702b15a040 269 Gene3D G3DSA:3.40.30.10 91 191 3.9E-35 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05915 d59e7fc6dabebc18a055f9702b15a040 269 Gene3D G3DSA:3.40.30.10 196 266 7.6E-7 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05915 d59e7fc6dabebc18a055f9702b15a040 269 Pfam PF13462 Thioredoxin 103 266 3.0E-48 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS05915 d59e7fc6dabebc18a055f9702b15a040 269 SUPERFAMILY SSF52833 103 266 3.92E-43 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 199 3.7E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 227 3.7E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 215 3.7E-10 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 185 239 2.6E-16 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 ProSitePatterns PS00622 LuxR-type HTH domain signature. 199 226 - T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 Gene3D G3DSA:1.10.10.10 184 245 8.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 SMART SM00421 182 239 1.5E-22 T 06-07-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDO28_RS07400 8e68d3437dd7ecf1c714cc15f544f3f9 245 SUPERFAMILY SSF46894 168 245 3.74E-19 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS16175 deb420b8809dd322379c23d0f51c010d 367 Pfam PF13343 Bacterial extracellular solute-binding protein 95 324 2.4E-37 T 06-07-2017 CDO28_RS16175 deb420b8809dd322379c23d0f51c010d 367 Gene3D G3DSA:3.40.190.10 287 329 2.7E-26 T 06-07-2017 CDO28_RS16175 deb420b8809dd322379c23d0f51c010d 367 Gene3D G3DSA:3.40.190.10 7 140 2.7E-26 T 06-07-2017 CDO28_RS16175 deb420b8809dd322379c23d0f51c010d 367 SUPERFAMILY SSF53850 38 360 4.35E-51 T 06-07-2017 CDO28_RS16175 deb420b8809dd322379c23d0f51c010d 367 Gene3D G3DSA:3.40.190.10 142 286 7.3E-25 T 06-07-2017 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 18 169 1.7E-13 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 Gene3D G3DSA:3.30.70.1230 17 180 1.2E-26 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SUPERFAMILY SSF48452 414 607 5.12E-26 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SUPERFAMILY SSF48452 333 401 5.26E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 Pfam PF13432 Tetratricopeptide repeat 437 490 1.3E-6 T 06-07-2017 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SUPERFAMILY SSF55073 13 181 5.18E-43 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SMART SM00044 3 161 0.0027 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SMART SM00028 423 456 0.028 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SMART SM00028 566 599 57.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SMART SM00028 457 490 8.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 SMART SM00028 532 565 65.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 Gene3D G3DSA:1.25.40.10 366 590 4.2E-39 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13270 d845541579018adfda76a5bc46b6931e 634 Gene3D G3DSA:3.40.50.10070 202 307 3.8E-4 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 SUPERFAMILY SSF53850 48 276 2.54E-50 T 06-07-2017 CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 Gene3D G3DSA:3.40.190.10 48 135 2.0E-30 T 06-07-2017 CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 Gene3D G3DSA:3.40.190.10 236 276 2.0E-30 T 06-07-2017 CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 SMART SM00062 47 277 4.4E-42 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 Gene3D G3DSA:3.40.190.10 138 232 4.3E-17 T 06-07-2017 CDO28_RS07955 c4d17021838a18c1ef84291840825b75 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 48 275 2.0E-46 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS33290 e589b19f1c6b4d846d8751265017ff35 126 Pfam PF04304 Protein of unknown function (DUF454) 6 120 3.0E-38 T 06-07-2017 IPR007401 Protein of unknown function DUF454 CDO28_RS33290 e589b19f1c6b4d846d8751265017ff35 126 PIRSF PIRSF016789 5 126 3.2E-44 T 06-07-2017 IPR007401 Protein of unknown function DUF454 CDO28_RS33375 3f2e4bbe2c05ea04151e61b7c8a089d4 392 Pfam PF04230 Polysaccharide pyruvyl transferase 63 330 1.2E-21 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 Pfam PF03466 LysR substrate binding domain 97 291 4.4E-18 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 SUPERFAMILY SSF53850 97 295 1.47E-22 T 06-07-2017 CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 SUPERFAMILY SSF46785 4 116 9.52E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 Gene3D G3DSA:3.40.190.10 187 261 6.2E-9 T 06-07-2017 CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 4.7E-14 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 Gene3D G3DSA:1.10.10.10 10 86 9.9E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19075 d47e3e63195a7bf7d131cc3290fcbcb7 299 Gene3D G3DSA:3.40.190.10 97 186 5.7E-18 T 06-07-2017 CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 Gene3D G3DSA:3.40.50.720 6 232 1.3E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 2.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.6E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 SUPERFAMILY SSF51735 4 234 1.01E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 232 1.8E-47 T 06-07-2017 CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31625 75aa078fa0f19e1a9387085216cb1453 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 1.9E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS18365 8653148258a09a6105b8dd7f32555440 172 Pfam PF11000 Protein of unknown function (DUF2840) 15 160 1.7E-71 T 06-07-2017 IPR021263 Protein of unknown function DUF2840 CDO28_RS26635 863cb2ce6b2963aa745805cbec625639 299 SUPERFAMILY SSF161098 33 292 1.78E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26635 863cb2ce6b2963aa745805cbec625639 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 293 4.5E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26635 863cb2ce6b2963aa745805cbec625639 299 Gene3D G3DSA:1.10.3720.10 35 297 1.0E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18385 7854b55fc731476aa885e89807ebe598 580 Pfam PF11843 Protein of unknown function (DUF3363) 404 579 7.8E-53 T 06-07-2017 IPR021795 Protein of unknown function DUF3363 CDO28_RS18385 7854b55fc731476aa885e89807ebe598 580 Pfam PF11843 Protein of unknown function (DUF3363) 280 401 4.2E-33 T 06-07-2017 IPR021795 Protein of unknown function DUF3363 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 90 102 7.3E-17 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 16 28 7.3E-17 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 353 359 7.3E-17 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 386 398 7.3E-17 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 45 57 7.3E-17 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 Gene3D G3DSA:3.50.50.60 15 276 1.5E-21 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 SUPERFAMILY SSF51905 16 113 5.18E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 SUPERFAMILY SSF51905 367 412 5.18E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 SUPERFAMILY SSF51905 140 259 5.18E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 Pfam PF01266 FAD dependent oxidoreductase 17 396 2.6E-42 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS33000 26919475cce5c247d87d600c42ae4802 577 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 419 539 1.1E-19 T 06-07-2017 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 Gene3D G3DSA:1.20.1560.10 25 322 3.5E-44 T 06-07-2017 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 SMART SM00382 362 549 5.0E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 Gene3D G3DSA:3.40.50.300 334 562 1.7E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 Pfam PF00664 ABC transporter transmembrane region 34 282 6.3E-21 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 SUPERFAMILY SSF90123 22 325 8.5E-49 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 20 562 6.7E-221 T 06-07-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 Pfam PF00005 ABC transporter 355 501 9.2E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS17140 8c01cb8c83d37620e523d9ebdfb8fdaa 617 SUPERFAMILY SSF52540 330 561 3.29E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.5E-22 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 Gene3D G3DSA:3.40.190.10 98 205 4.1E-11 T 06-07-2017 CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 SUPERFAMILY SSF53850 97 208 1.12E-14 T 06-07-2017 CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 Gene3D G3DSA:1.10.10.10 5 90 2.5E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 Pfam PF03466 LysR substrate binding domain 97 208 1.8E-14 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 SUPERFAMILY SSF46785 6 91 1.24E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.0E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.0E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19055 a20d97b81cfb8bb70fe5d5e1c69340f5 213 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.0E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS17065 d252036e9765df47b3812de79a67b28d 379 PIRSF PIRSF039026 10 368 3.5E-124 T 06-07-2017 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like CDO28_RS17065 d252036e9765df47b3812de79a67b28d 379 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 46 329 9.4E-36 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS17065 d252036e9765df47b3812de79a67b28d 379 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 35 1.3E-5 T 06-07-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CDO28_RS33620 b72cd3c49cb852d11dc1e30fc775ba38 292 Gene3D G3DSA:3.90.550.10 1 274 6.2E-60 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33620 b72cd3c49cb852d11dc1e30fc775ba38 292 SUPERFAMILY SSF53448 1 288 6.08E-83 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33620 b72cd3c49cb852d11dc1e30fc775ba38 292 Pfam PF00483 Nucleotidyl transferase 2 239 3.8E-63 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS33620 b72cd3c49cb852d11dc1e30fc775ba38 292 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 287 3.3E-140 T 06-07-2017 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 CDO28_RS11250 505656d9e19a208f440faf39d8cd6754 104 Gene3D G3DSA:3.30.1360.20 2 96 1.1E-35 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 CDO28_RS11250 505656d9e19a208f440faf39d8cd6754 104 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 3 96 24.69 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 CDO28_RS11250 505656d9e19a208f440faf39d8cd6754 104 SUPERFAMILY SSF55248 3 96 6.93E-35 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 CDO28_RS11250 505656d9e19a208f440faf39d8cd6754 104 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 5 94 7.7E-31 T 06-07-2017 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 CDO28_RS20285 883d71975e2e37180c1dc9ae8ac90a01 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 119 1.9E-9 T 06-07-2017 CDO28_RS20285 883d71975e2e37180c1dc9ae8ac90a01 145 Gene3D G3DSA:3.10.180.10 1 144 8.6E-52 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS20285 883d71975e2e37180c1dc9ae8ac90a01 145 SUPERFAMILY SSF54593 3 142 6.33E-35 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS26675 bcae9b1f1d61019b60d840b9168f559a 135 Pfam PF10387 Protein of unknown function (DUF2442) 27 97 1.3E-16 T 06-07-2017 IPR018841 Protein of unknown function DUF2442 CDO28_RS29820 008e1d5e4383aa54005c8e955dbfce69 303 SUPERFAMILY SSF103481 193 292 2.22E-15 T 06-07-2017 CDO28_RS29820 008e1d5e4383aa54005c8e955dbfce69 303 Pfam PF00892 EamA-like transporter family 163 289 1.1E-12 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS29820 008e1d5e4383aa54005c8e955dbfce69 303 Pfam PF00892 EamA-like transporter family 20 149 2.6E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS29820 008e1d5e4383aa54005c8e955dbfce69 303 SUPERFAMILY SSF103481 53 153 3.4E-11 T 06-07-2017 CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 SUPERFAMILY SSF52540 5 253 2.34E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 SMART SM00382 39 231 2.4E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 Pfam PF00005 ABC transporter 31 181 1.4E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 1.6E-18 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 Gene3D G3DSA:3.40.50.300 23 255 9.9E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12260 a7e174af4150c8af7cd4cb236c0cb594 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 8.5E-28 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS19900 6498e40712886fa53d3383608c86b7a9 312 SUPERFAMILY SSF53590 1 308 7.33E-90 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS19900 6498e40712886fa53d3383608c86b7a9 312 Gene3D G3DSA:3.90.245.10 1 310 5.6E-97 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS19900 6498e40712886fa53d3383608c86b7a9 312 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 286 9.5E-62 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS05645 da4dc80a7f3ed32f35622ea2c4a67dab 304 SUPERFAMILY SSF46626 26 171 2.31E-21 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS05645 da4dc80a7f3ed32f35622ea2c4a67dab 304 Pfam PF00034 Cytochrome c 46 150 5.0E-5 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS05645 da4dc80a7f3ed32f35622ea2c4a67dab 304 Gene3D G3DSA:1.10.760.10 193 301 1.6E-7 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS05645 da4dc80a7f3ed32f35622ea2c4a67dab 304 Gene3D G3DSA:1.10.760.10 44 150 3.0E-10 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS05645 da4dc80a7f3ed32f35622ea2c4a67dab 304 SUPERFAMILY SSF46626 187 302 2.01E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS34680 e8a5bd0d658700b549f4be5ef23b8d8a 198 Pfam PF13676 TIR domain 45 143 2.3E-7 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS34680 e8a5bd0d658700b549f4be5ef23b8d8a 198 SUPERFAMILY SSF52200 33 144 6.8E-8 T 06-07-2017 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 SMART SM00382 361 528 5.0E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 SMART SM00382 28 210 6.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 SUPERFAMILY SSF52540 9 210 5.44E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 SUPERFAMILY SSF52540 324 514 5.02E-33 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 Gene3D G3DSA:3.40.50.300 334 515 2.3E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 Gene3D G3DSA:3.40.50.300 2 228 1.5E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 Pfam PF00005 ABC transporter 353 482 2.5E-15 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20645 e1b31e085db440bc3372304e0d5c0b4a 529 Pfam PF00005 ABC transporter 30 166 2.7E-22 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS08340 9d8c108762de8c9bd043fef7536d847e 164 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 39 162 8.0E-45 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS08340 9d8c108762de8c9bd043fef7536d847e 164 Pfam PF01641 SelR domain 43 161 1.1E-46 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS08340 9d8c108762de8c9bd043fef7536d847e 164 Gene3D G3DSA:2.170.150.20 35 162 7.3E-54 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS08340 9d8c108762de8c9bd043fef7536d847e 164 SUPERFAMILY SSF51316 38 162 1.15E-53 T 06-07-2017 IPR011057 Mss4-like CDO28_RS08210 3f63eb06df04244d692c685835a2dc66 156 SUPERFAMILY SSF55826 1 147 2.75E-35 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS08210 3f63eb06df04244d692c685835a2dc66 156 Gene3D G3DSA:3.90.960.10 6 147 3.0E-26 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS08210 3f63eb06df04244d692c685835a2dc66 156 Pfam PF04073 Aminoacyl-tRNA editing domain 24 143 7.1E-27 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS06105 d42b9c8fd7e476c236cdaf6791d41e35 352 Gene3D G3DSA:3.20.20.370 222 302 2.0E-19 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS06105 d42b9c8fd7e476c236cdaf6791d41e35 352 Gene3D G3DSA:3.20.20.370 100 140 2.0E-19 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS06105 d42b9c8fd7e476c236cdaf6791d41e35 352 SUPERFAMILY SSF88713 222 314 8.39E-30 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS06105 d42b9c8fd7e476c236cdaf6791d41e35 352 SUPERFAMILY SSF88713 63 140 8.39E-30 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS06105 d42b9c8fd7e476c236cdaf6791d41e35 352 Pfam PF01522 Polysaccharide deacetylase 99 301 1.7E-23 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 SUPERFAMILY SSF63829 9 296 1.09E-52 T 06-07-2017 CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 203 220 4.5E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 91 112 4.5E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 184 4.5E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 246 264 4.5E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 16 33 4.5E-29 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 Gene3D G3DSA:2.120.10.30 3 297 5.9E-68 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS20845 7f008c67901247c09b6750ee7f11364c 311 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 265 7.6E-71 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS10365 e6e5ec63c056077c8c01d5bfa344e9c9 157 Pfam PF10947 Protein of unknown function (DUF2628) 16 86 4.4E-10 T 06-07-2017 IPR024399 Protein of unknown function DUF2628 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 Gene3D G3DSA:1.10.10.10 7 139 1.7E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 SUPERFAMILY SSF46785 7 140 1.45E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 4.2E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 4.2E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 4.2E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 4.2E-8 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 ProSitePatterns PS01117 MarR-type HTH domain signature. 65 99 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 SMART SM00347 26 126 4.1E-21 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS09725 8cff2b457ce88ba794f20ca907e9b8ec 147 Pfam PF01047 MarR family 35 90 8.5E-15 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 Pfam PF07690 Major Facilitator Superfamily 70 293 2.1E-18 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 SUPERFAMILY SSF103473 64 426 2.75E-40 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 Gene3D G3DSA:1.20.1250.20 259 426 3.5E-16 T 06-07-2017 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 Gene3D G3DSA:1.20.1250.20 67 242 6.1E-21 T 06-07-2017 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 PRINTS PR01035 Tetracycline resistance protein signature 184 206 2.1E-5 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 PRINTS PR01035 Tetracycline resistance protein signature 292 312 2.1E-5 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 PRINTS PR01035 Tetracycline resistance protein signature 130 154 2.1E-5 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS22505 2e09160d0be1e533334988fb9b8042f8 437 PRINTS PR01035 Tetracycline resistance protein signature 73 89 2.1E-5 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Pfam PF08335 GlnD PII-uridylyltransferase 326 467 2.7E-40 T 06-07-2017 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 SUPERFAMILY SSF81593 315 467 7.53E-45 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 SUPERFAMILY SSF81301 39 314 9.45E-70 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 51 970 18.21 T 06-07-2017 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 SUPERFAMILY SSF81301 552 831 1.9E-77 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 SUPERFAMILY SSF81593 834 983 7.85E-28 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Gene3D G3DSA:3.30.460.10 666 830 4.8E-53 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Gene3D G3DSA:3.30.460.10 142 313 5.3E-49 T 06-07-2017 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 55 305 1.7E-63 T 06-07-2017 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CDO28_RS05400 ae5f6da900c90244f892e0ed1f1ec6e1 986 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 580 820 6.0E-71 T 06-07-2017 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 SUPERFAMILY SSF51569 3 329 2.34E-104 T 06-07-2017 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 Gene3D G3DSA:3.20.20.70 1 334 2.6E-107 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 346 9.6E-175 T 06-07-2017 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 9.4E-96 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 PIRSF PIRSF001359 1 329 5.0E-84 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS27035 8293e326a6bab008b518165dc2166021 347 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 328 1.6E-94 T 06-07-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 SUPERFAMILY SSF46785 10 108 2.78E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 SMART SM00345 21 79 1.7E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 Gene3D G3DSA:1.20.120.530 82 213 2.8E-20 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 Gene3D G3DSA:1.10.10.10 8 79 6.8E-14 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 79 4.4E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 Pfam PF07729 FCD domain 89 210 3.1E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 SUPERFAMILY SSF48008 87 212 1.44E-18 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS14640 0a88aee4e558266278f850e32dcbd601 230 SMART SM00895 89 212 1.2E-9 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 Gene3D G3DSA:3.40.50.300 362 593 6.8E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 Gene3D G3DSA:1.20.1560.10 21 342 9.5E-59 T 06-07-2017 CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 SUPERFAMILY SSF52540 353 598 3.13E-92 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 SUPERFAMILY SSF90123 21 342 1.29E-57 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 SMART SM00382 388 574 8.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 Pfam PF00664 ABC transporter transmembrane region 40 313 9.2E-32 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS04905 da5f97eceb83cda33b96509a00d9b1cb 627 Pfam PF00005 ABC transporter 379 528 1.4E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26585 5720ba9d9b56ec98b7350417105c863a 391 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 40 92 3.9E-11 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS26585 5720ba9d9b56ec98b7350417105c863a 391 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 202 389 1.1E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26585 5720ba9d9b56ec98b7350417105c863a 391 SUPERFAMILY SSF161098 179 377 6.76E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26585 5720ba9d9b56ec98b7350417105c863a 391 Gene3D G3DSA:1.10.3720.10 175 388 9.7E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 SUPERFAMILY SSF53850 36 357 6.42E-55 T 06-07-2017 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 Gene3D G3DSA:3.40.190.10 160 305 6.5E-29 T 06-07-2017 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 Gene3D G3DSA:3.40.190.10 36 159 4.2E-20 T 06-07-2017 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 Pfam PF13416 Bacterial extracellular solute-binding protein 52 321 1.6E-29 T 06-07-2017 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 57 78 9.6E-8 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 41 57 9.6E-8 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 9.6E-8 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 102 115 9.6E-8 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS32000 d793f7d8e17a81b6794d3b0131437eba 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 135 151 9.6E-8 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 Pfam PF00588 SpoU rRNA Methylase family 143 283 5.1E-33 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 Gene3D G3DSA:3.30.1330.30 53 129 2.4E-10 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 59 131 2.7E-13 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 SUPERFAMILY SSF55315 48 130 1.53E-12 T 06-07-2017 IPR029064 50S ribosomal protein L30e-like CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 Gene3D G3DSA:3.40.1280.10 137 287 3.2E-43 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 SMART SM00967 59 133 7.5E-13 T 06-07-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 CDO28_RS03735 9ba5714eb0114abe2138822d813d4bf9 291 SUPERFAMILY SSF75217 121 287 8.5E-41 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS14690 e33250b95272e0044e583a98c456d90f 352 Pfam PF00491 Arginase family 71 338 2.3E-84 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS14690 e33250b95272e0044e583a98c456d90f 352 ProSitePatterns PS01053 Arginase family signature. 270 291 - T 06-07-2017 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 CDO28_RS14690 e33250b95272e0044e583a98c456d90f 352 Gene3D G3DSA:3.40.800.10 39 343 6.8E-106 T 06-07-2017 IPR023696 Ureohydrolase domain CDO28_RS14690 e33250b95272e0044e583a98c456d90f 352 TIGRFAM TIGR01230 agmatinase: agmatinase 70 339 2.5E-57 T 06-07-2017 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 CDO28_RS14690 e33250b95272e0044e583a98c456d90f 352 SUPERFAMILY SSF52768 64 344 2.7E-86 T 06-07-2017 CDO28_RS17795 9f639e9a0c62204f7ef6c0df9c59a1d2 126 Pfam PF11776 Nickel/cobalt transporter regulator 71 120 3.3E-21 T 06-07-2017 IPR024572 Nickel/cobalt homeostasis protein RcnB CDO28_RS17795 9f639e9a0c62204f7ef6c0df9c59a1d2 126 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 66 120 7.0E-27 T 06-07-2017 IPR024572 Nickel/cobalt homeostasis protein RcnB CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 Gene3D G3DSA:3.40.50.300 18 254 8.3E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 SMART SM00382 43 230 8.0E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 Pfam PF00005 ABC transporter 34 182 1.9E-36 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 SUPERFAMILY SSF52540 19 252 1.65E-81 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03000 3bd9723afa1aaf319fd426622a8959c3 258 PIRSF PIRSF039085 15 258 1.5E-108 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS14835 9250afbe6e8a8ee50f4d34c409f4ef7b 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.407 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14835 9250afbe6e8a8ee50f4d34c409f4ef7b 101 Gene3D G3DSA:2.10.150.10 1 101 1.6E-49 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14835 9250afbe6e8a8ee50f4d34c409f4ef7b 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 100 4.2E-43 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14835 9250afbe6e8a8ee50f4d34c409f4ef7b 101 SUPERFAMILY SSF51278 1 101 2.35E-46 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS14835 9250afbe6e8a8ee50f4d34c409f4ef7b 101 Pfam PF00699 Urease beta subunit 3 100 4.8E-45 T 06-07-2017 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CDO28_RS23095 c2ee2cd0ff245266e44fde08b9ec1b2c 247 SUPERFAMILY SSF52540 8 229 1.1E-43 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23095 c2ee2cd0ff245266e44fde08b9ec1b2c 247 Gene3D G3DSA:3.40.50.300 5 202 9.3E-11 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23095 c2ee2cd0ff245266e44fde08b9ec1b2c 247 Pfam PF00685 Sulfotransferase domain 11 203 3.2E-10 T 06-07-2017 IPR000863 Sulfotransferase domain GO:0008146 CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 6.3E-59 T 06-07-2017 CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.2E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 Gene3D G3DSA:3.40.50.720 1 254 5.1E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 SUPERFAMILY SSF51735 6 254 7.17E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33060 e9eab3d1a7759caf86aa58e8e03453f7 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 144 0.0091 T 06-07-2017 CDO28_RS15330 b7ff93c6ec69455a55bed3e3ea42590c 83 Gene3D G3DSA:1.10.10.10 2 38 3.0E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15330 b7ff93c6ec69455a55bed3e3ea42590c 83 Pfam PF07704 Rv0623-like transcription factor 1 80 2.7E-21 T 06-07-2017 IPR011660 Rv0623-like transcription factor CDO28_RS31515 edb859c45e66e4adc0f41ff6d38a2c48 323 SUPERFAMILY SSF53850 49 251 2.05E-21 T 06-07-2017 CDO28_RS31515 edb859c45e66e4adc0f41ff6d38a2c48 323 Pfam PF09084 NMT1/THI5 like 52 250 1.4E-8 T 06-07-2017 IPR015168 SsuA/THI5-like CDO28_RS31515 edb859c45e66e4adc0f41ff6d38a2c48 323 Gene3D G3DSA:3.40.190.10 55 121 5.5E-4 T 06-07-2017 CDO28_RS31515 edb859c45e66e4adc0f41ff6d38a2c48 323 Gene3D G3DSA:3.40.190.10 122 240 1.8E-7 T 06-07-2017 CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 SUPERFAMILY SSF110942 510 622 2.35E-27 T 06-07-2017 CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PIRSF PIRSF002583 1 629 1.4E-200 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 Gene3D G3DSA:3.30.565.10 8 218 8.5E-74 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 Pfam PF00183 Hsp90 protein 222 627 1.5E-102 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 SMART SM00387 31 190 2.8E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 SUPERFAMILY SSF54211 231 482 2.88E-86 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 30 52 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 178 195 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 97 114 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 196 214 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 125 147 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 9 29 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 PRINTS PR00775 90kDa heat shock protein signature 79 96 1.3E-51 T 06-07-2017 IPR020575 Heat shock protein Hsp90, N-terminal CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 SUPERFAMILY SSF55874 8 217 1.76E-61 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 Hamap MF_00505 Chaperone protein HtpG [htpG]. 6 624 29.293 T 06-07-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 CDO28_RS26990 bf54d6bb891308b44c7e5d2f304bb064 629 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 160 1.0E-11 T 06-07-2017 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 Pfam PF01339 CheB methylesterase 162 338 4.3E-54 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 2 343 31.14 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 Gene3D G3DSA:3.40.50.180 156 344 7.5E-68 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 PIRSF PIRSF000876 1 347 7.9E-102 T 06-07-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 Gene3D G3DSA:3.40.50.2300 2 108 5.1E-9 T 06-07-2017 CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 SUPERFAMILY SSF52172 1 108 8.19E-8 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS24835 c662b7bd5b46a440e253a96439fb0f10 354 SUPERFAMILY SSF52738 157 344 6.93E-62 T 06-07-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CDO28_RS32925 e41513c78d1b044daf343adb49a7712a 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 311 3.3E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 SUPERFAMILY SSF53850 87 283 5.02E-21 T 06-07-2017 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 SUPERFAMILY SSF46785 1 82 2.05E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 Gene3D G3DSA:1.10.10.10 1 81 1.2E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.0E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 Gene3D G3DSA:3.40.190.10 85 188 4.6E-11 T 06-07-2017 CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 Pfam PF03466 LysR substrate binding domain 87 277 5.8E-19 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19460 5812afcdfd394eca060da23606cbf9da 288 Gene3D G3DSA:3.40.190.10 189 231 1.3E-4 T 06-07-2017 CDO28_RS11855 8a8a806854d774141455eda9c451aeee 198 SUPERFAMILY SSF56925 47 193 3.53E-18 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS09575 6bf452c2512f82de8d3a2384331ae200 303 Gene3D G3DSA:3.30.420.40 1 128 1.3E-30 T 06-07-2017 CDO28_RS09575 6bf452c2512f82de8d3a2384331ae200 303 Pfam PF00480 ROK family 3 296 2.7E-46 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS09575 6bf452c2512f82de8d3a2384331ae200 303 SUPERFAMILY SSF53067 1 297 2.9E-42 T 06-07-2017 CDO28_RS09575 6bf452c2512f82de8d3a2384331ae200 303 Gene3D G3DSA:3.30.420.40 129 280 6.3E-35 T 06-07-2017 CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 255 4.6E-69 T 06-07-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 SUPERFAMILY SSF56219 1 255 2.36E-76 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 254 4.5E-70 T 06-07-2017 CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 Gene3D G3DSA:3.60.10.10 1 255 8.7E-78 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 06-07-2017 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 CDO28_RS29740 0b17ae95710d0dda0ee568cabc6c6875 257 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 248 2.5E-21 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS19035 a81df8d85cff664c86e31293b7ec6401 330 SUPERFAMILY SSF53850 114 295 2.58E-13 T 06-07-2017 CDO28_RS19035 a81df8d85cff664c86e31293b7ec6401 330 PIRSF PIRSF017082 2 329 4.2E-88 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS19035 a81df8d85cff664c86e31293b7ec6401 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 3.8E-93 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS24135 de905fd9306c100dc9f1a551784d81bd 233 Gene3D G3DSA:1.20.58.430 26 219 1.2E-60 T 06-07-2017 IPR023220 Type IV secretion system, VirB5-domain CDO28_RS24135 de905fd9306c100dc9f1a551784d81bd 233 TIGRFAM TIGR02791 VirB5: P-type DNA transfer protein VirB5 9 219 5.7E-72 T 06-07-2017 IPR014158 Type IV secretion system, VirB5 CDO28_RS24135 de905fd9306c100dc9f1a551784d81bd 233 Pfam PF07996 Type IV secretion system proteins 26 217 2.5E-55 T 06-07-2017 IPR014158 Type IV secretion system, VirB5 CDO28_RS24135 de905fd9306c100dc9f1a551784d81bd 233 SUPERFAMILY SSF101082 26 219 4.05E-43 T 06-07-2017 IPR023220 Type IV secretion system, VirB5-domain CDO28_RS21135 ad208521b7809d00e6a7c720b8ac13e6 438 PIRSF PIRSF006066 5 436 1.9E-98 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS21135 ad208521b7809d00e6a7c720b8ac13e6 438 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 430 1.2E-100 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS21135 ad208521b7809d00e6a7c720b8ac13e6 438 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 424 3.2E-92 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 SMART SM00283 475 722 9.2E-96 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 SMART SM00304 422 474 4.0E-6 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 SMART SM00304 341 394 0.006 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 SUPERFAMILY SSF158472 341 391 7.06E-6 T 06-07-2017 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 Gene3D G3DSA:1.10.287.950 490 694 6.7E-57 T 06-07-2017 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 Pfam PF00672 HAMP domain 321 390 9.1E-9 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 Pfam PF02743 Cache domain 31 255 8.4E-15 T 06-07-2017 IPR033479 Double Cache domain 1 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 Gene3D G3DSA:3.30.450.20 173 315 4.9E-16 T 06-07-2017 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 496 525 7.9E-44 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 573 600 7.9E-44 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 650 679 7.9E-44 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 602 631 7.9E-44 T 06-07-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 SUPERFAMILY SSF58104 442 723 2.09E-69 T 06-07-2017 CDO28_RS08460 c6d27c771958494f82a2eb8c09427d54 788 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 530 721 8.5E-58 T 06-07-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 SUPERFAMILY SSF46785 5 95 4.92E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 SMART SM00418 5 83 2.9E-21 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 1.2E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 1.2E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 1.2E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 Pfam PF12840 Helix-turn-helix domain 5 63 3.4E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11205 9d9232d1d5c2601c94d4e21d78e9e0f4 104 Gene3D G3DSA:1.10.10.10 5 102 2.6E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20430 06c21acd0f9f86c2b1d0686d7aee5f56 141 SUPERFAMILY SSF81324 30 129 8.5E-12 T 06-07-2017 CDO28_RS20430 06c21acd0f9f86c2b1d0686d7aee5f56 141 Gene3D G3DSA:1.10.287.70 47 129 1.4E-10 T 06-07-2017 CDO28_RS20430 06c21acd0f9f86c2b1d0686d7aee5f56 141 Pfam PF07885 Ion channel 59 132 3.2E-11 T 06-07-2017 IPR013099 Potassium channel domain CDO28_RS29140 a87c5d01d495c5a0b141c509bf3276bc 431 Pfam PF05559 Protein of unknown function (DUF763) 12 342 6.6E-125 T 06-07-2017 IPR008482 Protein of unknown function DUF763 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 298 318 1.1E-10 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 281 298 1.1E-10 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 Gene3D G3DSA:1.10.10.60 270 314 3.4E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 Pfam PF02954 Bacterial regulatory protein, Fis family 275 315 1.2E-14 T 06-07-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 Pfam PF01590 GAF domain 76 199 2.8E-6 T 06-07-2017 IPR003018 GAF domain GO:0005515 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 Gene3D G3DSA:3.30.450.40 152 205 6.9E-8 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 SUPERFAMILY SSF46689 275 317 5.38E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS15460 e7cf123568ee8112a2444353be3046a5 318 SUPERFAMILY SSF55781 62 205 3.02E-13 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 Pfam PF01381 Helix-turn-helix 12 66 1.0E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 Pfam PF06114 Domain of unknown function (DUF955) 192 314 1.4E-21 T 06-07-2017 IPR010359 HTH domain, IrrE-type CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 PIRSF PIRSF019251 1 470 1.1E-140 T 06-07-2017 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 Gene3D G3DSA:1.10.260.40 9 96 2.0E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 315 467 1.3E-54 T 06-07-2017 IPR018653 Domain of unknown function DUF2083,transcriptional regulator CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 SMART SM00530 11 66 9.6E-14 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS07060 e82a3bda407621ded57c08a8195a0b3d 470 SUPERFAMILY SSF47413 4 70 3.22E-14 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 SUPERFAMILY SSF56784 270 388 2.46E-8 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 272 394 8.9E-17 T 06-07-2017 IPR010033 HAD-superfamily phosphatase, subfamily IIIC CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 SUPERFAMILY SSF55729 460 601 2.28E-5 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 TIGRFAM TIGR01686 FkbH: FkbH domain 271 597 1.3E-85 T 06-07-2017 IPR010037 FkbH domain CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 Gene3D G3DSA:3.40.630.30 463 600 1.2E-4 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15710 bf5a1948aaab9d85afdc26331413b1c4 651 Gene3D G3DSA:3.40.50.1000 270 394 3.0E-8 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS24755 1509fe326aee71ac7b0d5a25ee6c6709 167 SUPERFAMILY SSF56770 11 154 3.92E-65 T 06-07-2017 CDO28_RS24755 1509fe326aee71ac7b0d5a25ee6c6709 167 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 2 151 43.073 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24755 1509fe326aee71ac7b0d5a25ee6c6709 167 Gene3D G3DSA:3.40.50.700 23 151 3.8E-34 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24755 1509fe326aee71ac7b0d5a25ee6c6709 167 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 12 152 5.2E-73 T 06-07-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24755 1509fe326aee71ac7b0d5a25ee6c6709 167 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 143 1.5E-23 T 06-07-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS32730 c9b9d7163842b5e094405c6f50b6ac55 424 SUPERFAMILY SSF103473 15 411 7.98E-67 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS32730 c9b9d7163842b5e094405c6f50b6ac55 424 Gene3D G3DSA:1.20.1250.20 17 201 1.6E-25 T 06-07-2017 CDO28_RS32730 c9b9d7163842b5e094405c6f50b6ac55 424 Pfam PF07690 Major Facilitator Superfamily 23 345 1.1E-37 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS32730 c9b9d7163842b5e094405c6f50b6ac55 424 Gene3D G3DSA:1.20.1250.20 217 410 3.6E-26 T 06-07-2017 CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 SMART SM00382 34 248 0.0053 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 9 250 5.1E-117 T 06-07-2017 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 SUPERFAMILY SSF52540 9 248 1.7E-52 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 228 249 2.5E-5 T 06-07-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 Gene3D G3DSA:3.40.50.300 8 245 4.8E-56 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30290 51e5018853464bbdd9af667aa7ddd951 250 Pfam PF00005 ABC transporter 25 180 1.1E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15505 e05a23facf2beb6b9e10d9cd6b4d134e 280 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 153 165 - T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CDO28_RS15505 e05a23facf2beb6b9e10d9cd6b4d134e 280 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 18 271 2.9E-75 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CDO28_RS15505 e05a23facf2beb6b9e10d9cd6b4d134e 280 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 11 274 4.6E-70 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CDO28_RS15505 e05a23facf2beb6b9e10d9cd6b4d134e 280 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 15 277 19.316 T 06-07-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CDO28_RS23655 ab1d9be70a138032f5ebbc840935f3dd 394 SUPERFAMILY SSF103473 7 392 2.22E-36 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS23655 ab1d9be70a138032f5ebbc840935f3dd 394 Pfam PF07690 Major Facilitator Superfamily 18 193 2.9E-17 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS23655 ab1d9be70a138032f5ebbc840935f3dd 394 Gene3D G3DSA:1.20.1250.20 13 190 8.0E-19 T 06-07-2017 CDO28_RS23655 ab1d9be70a138032f5ebbc840935f3dd 394 Gene3D G3DSA:1.20.1250.20 212 391 1.7E-8 T 06-07-2017 CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 SUPERFAMILY SSF51735 127 291 4.51E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 Gene3D G3DSA:3.90.180.10 4 96 1.5E-22 T 06-07-2017 IPR011032 GroES-like CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 SUPERFAMILY SSF50129 297 317 7.76E-29 T 06-07-2017 IPR011032 GroES-like CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 SUPERFAMILY SSF50129 9 124 7.76E-29 T 06-07-2017 IPR011032 GroES-like CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 Gene3D G3DSA:3.90.180.10 102 146 9.1E-4 T 06-07-2017 IPR011032 GroES-like CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 Pfam PF00107 Zinc-binding dehydrogenase 156 274 1.4E-17 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 Gene3D G3DSA:3.40.50.720 147 266 8.6E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 96 2.8E-11 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS31805 265bb607cefc0824d131ffc7849bcb5d 330 SMART SM00829 19 326 8.2E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS07975 97ad5073aa8b18223f043495906c451c 203 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 1.7E-10 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS07975 97ad5073aa8b18223f043495906c451c 203 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 Gene3D G3DSA:3.40.190.10 93 179 5.3E-15 T 06-07-2017 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 Gene3D G3DSA:3.40.190.10 180 261 1.4E-9 T 06-07-2017 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 SUPERFAMILY SSF53850 89 293 5.79E-38 T 06-07-2017 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 Pfam PF03466 LysR substrate binding domain 88 292 4.3E-37 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.8E-6 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 SUPERFAMILY SSF46785 3 86 2.72E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 Gene3D G3DSA:1.10.10.10 3 87 2.1E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS03750 99597efb93ee422778cdd5f191a52834 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.4E-19 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS27090 347cd680e9c834fc9e4abd01a03bcb0e 384 Pfam PF12698 ABC-2 family transporter protein 37 376 1.0E-46 T 06-07-2017 CDO28_RS25840 9f255dafc35ea2975bd2985d7d75fc9b 242 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 7 218 4.1E-44 T 06-07-2017 CDO28_RS25840 9f255dafc35ea2975bd2985d7d75fc9b 242 SUPERFAMILY SSF69336 180 220 9.29E-5 T 06-07-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS34200 338bb75982b443c840dba6d860b97b88 227 Pfam PF03483 B3/4 domain 62 193 9.9E-19 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDO28_RS34200 338bb75982b443c840dba6d860b97b88 227 SMART SM00873 60 212 9.4E-11 T 06-07-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDO28_RS34200 338bb75982b443c840dba6d860b97b88 227 SUPERFAMILY SSF56037 53 209 4.18E-25 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 CDO28_RS34200 338bb75982b443c840dba6d860b97b88 227 Gene3D G3DSA:3.50.40.10 61 187 6.6E-11 T 06-07-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 CDO28_RS29420 5215373433d002d187da3171fc3acd80 538 Pfam PF02706 Chain length determinant protein 92 256 2.9E-15 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 CDO28_RS29420 5215373433d002d187da3171fc3acd80 538 Pfam PF13807 G-rich domain on putative tyrosine kinase 447 523 3.6E-10 T 06-07-2017 IPR032807 Tyrosine kinase, G-rich domain CDO28_RS08995 d1c6a3cc9364232fd413f868002cfb6a 141 Pfam PF01850 PIN domain 3 129 9.2E-16 T 06-07-2017 IPR002716 PIN domain CDO28_RS08995 d1c6a3cc9364232fd413f868002cfb6a 141 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 137 11.621 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS08995 d1c6a3cc9364232fd413f868002cfb6a 141 SUPERFAMILY SSF88723 1 131 2.8E-20 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS08995 d1c6a3cc9364232fd413f868002cfb6a 141 Gene3D G3DSA:3.40.50.1010 1 138 2.3E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS30220 632bf62186ba50e7346af7108a5efeb1 286 Gene3D G3DSA:3.40.1080.10 3 120 1.2E-78 T 06-07-2017 CDO28_RS30220 632bf62186ba50e7346af7108a5efeb1 286 Gene3D G3DSA:3.40.1080.10 158 272 1.2E-78 T 06-07-2017 CDO28_RS30220 632bf62186ba50e7346af7108a5efeb1 286 SUPERFAMILY SSF100950 3 274 4.49E-76 T 06-07-2017 CDO28_RS30220 632bf62186ba50e7346af7108a5efeb1 286 Pfam PF01144 Coenzyme A transferase 5 222 3.9E-23 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS30220 632bf62186ba50e7346af7108a5efeb1 286 SMART SM00882 4 225 2.3E-37 T 06-07-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 CDO28_RS18905 daf55b3b755c48f97eaefa386de2a4c3 91 Pfam PF07369 Protein of unknown function (DUF1488) 3 85 1.8E-18 T 06-07-2017 IPR009962 Protein of unknown function DUF1488 CDO28_RS29915 da33c9c7d4b32b57b0972ecab46845c8 314 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 39 305 3.0E-29 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS29915 da33c9c7d4b32b57b0972ecab46845c8 314 Gene3D G3DSA:3.40.190.10 115 220 1.5E-7 T 06-07-2017 CDO28_RS29915 da33c9c7d4b32b57b0972ecab46845c8 314 SUPERFAMILY SSF53850 26 221 7.17E-11 T 06-07-2017 CDO28_RS29915 da33c9c7d4b32b57b0972ecab46845c8 314 PIRSF PIRSF017082 5 314 6.7E-105 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS28280 2cd942decee66296cb73b463a0d1c105 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 307 1.2E-62 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS28280 2cd942decee66296cb73b463a0d1c105 325 SUPERFAMILY SSF53850 133 256 3.49E-6 T 06-07-2017 CDO28_RS18220 025a24b588ae7628496de52859493308 518 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 438 5.8E-69 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS18220 025a24b588ae7628496de52859493308 518 Gene3D G3DSA:3.90.76.10 61 206 1.2E-32 T 06-07-2017 CDO28_RS18220 025a24b588ae7628496de52859493308 518 Gene3D G3DSA:3.10.105.10 281 484 6.2E-32 T 06-07-2017 CDO28_RS18220 025a24b588ae7628496de52859493308 518 SUPERFAMILY SSF53850 40 505 9.77E-112 T 06-07-2017 CDO28_RS18220 025a24b588ae7628496de52859493308 518 PIRSF PIRSF002741 8 517 3.1E-77 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 Gene3D G3DSA:3.30.540.10 7 168 8.0E-32 T 06-07-2017 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 Gene3D G3DSA:3.40.190.80 184 268 6.0E-12 T 06-07-2017 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 Pfam PF00459 Inositol monophosphatase family 9 251 2.1E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 SUPERFAMILY SSF56655 7 271 2.09E-56 T 06-07-2017 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 5.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 5.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS00345 8840488e9dd55705553b8709615e3632 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 91 107 5.3E-8 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS24165 e8fe0e6e05a594043196313d0b0e266c 122 SUPERFAMILY SSF46785 41 89 1.8E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24165 e8fe0e6e05a594043196313d0b0e266c 122 Gene3D G3DSA:1.10.10.10 45 92 2.6E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00260 56fba1a5af1ff6cb4e1e78208217bcaa 310 SUPERFAMILY SSF110581 11 306 4.05E-115 T 06-07-2017 CDO28_RS00260 56fba1a5af1ff6cb4e1e78208217bcaa 310 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 15 308 43.007 T 06-07-2017 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CDO28_RS00260 56fba1a5af1ff6cb4e1e78208217bcaa 310 Pfam PF04227 Indigoidine synthase A like protein 16 305 3.2E-127 T 06-07-2017 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 CDO28_RS13940 ebabf1ffa31f481a3abae3b91dbf1997 291 Pfam PF03631 Virulence factor BrkB 21 272 2.5E-46 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS13940 ebabf1ffa31f481a3abae3b91dbf1997 291 PIRSF PIRSF035875 1 284 6.7E-68 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS13940 ebabf1ffa31f481a3abae3b91dbf1997 291 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 272 1.6E-22 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS24715 974919e9015e06dd0dacf2495fa4002f 328 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 6 328 25.157 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24715 974919e9015e06dd0dacf2495fa4002f 328 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 52 67 - T 06-07-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24715 974919e9015e06dd0dacf2495fa4002f 328 Pfam PF00146 NADH dehydrogenase 13 322 2.7E-124 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS17405 d6fa32527ec3d7ea718ee905cbf79a08 156 SUPERFAMILY SSF55961 8 152 9.25E-38 T 06-07-2017 CDO28_RS17405 d6fa32527ec3d7ea718ee905cbf79a08 156 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 33 148 9.2E-9 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS17405 d6fa32527ec3d7ea718ee905cbf79a08 156 Gene3D G3DSA:3.30.530.20 8 126 2.4E-13 T 06-07-2017 IPR023393 START-like domain CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 Pfam PF00557 Metallopeptidase family M24 173 376 4.2E-27 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 SUPERFAMILY SSF53092 18 162 4.53E-22 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 Gene3D G3DSA:3.40.350.10 18 162 2.6E-25 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 Pfam PF01321 Creatinase/Prolidase N-terminal domain 18 164 4.8E-12 T 06-07-2017 IPR000587 Creatinase, N-terminal GO:0016787 CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 SUPERFAMILY SSF55920 164 389 3.27E-42 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS24190 8413df79dd7e1c426f0c547e8ba40bab 420 Gene3D G3DSA:3.90.230.10 164 388 6.5E-36 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS08100 04154ef5f334b2d4382bffc48931b710 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS08100 04154ef5f334b2d4382bffc48931b710 308 SUPERFAMILY SSF53613 2 302 9.04E-65 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS08100 04154ef5f334b2d4382bffc48931b710 308 Pfam PF00294 pfkB family carbohydrate kinase 2 302 3.2E-43 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS08100 04154ef5f334b2d4382bffc48931b710 308 Gene3D G3DSA:3.40.1190.20 2 306 1.0E-67 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS10690 0e7118e3c8f838ca6a26a7cb1b8bbeb3 219 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 3 219 1.5E-50 T 06-07-2017 IPR011078 Uncharacterised protein family UPF0001 CDO28_RS10690 0e7118e3c8f838ca6a26a7cb1b8bbeb3 219 SUPERFAMILY SSF51419 1 217 8.14E-70 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS10690 0e7118e3c8f838ca6a26a7cb1b8bbeb3 219 Gene3D G3DSA:3.20.20.10 1 219 1.1E-76 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS10690 0e7118e3c8f838ca6a26a7cb1b8bbeb3 219 Pfam PF01168 Alanine racemase, N-terminal domain 15 219 8.4E-24 T 06-07-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDO28_RS10690 0e7118e3c8f838ca6a26a7cb1b8bbeb3 219 PIRSF PIRSF004848 1 219 9.6E-63 T 06-07-2017 IPR011078 Uncharacterised protein family UPF0001 CDO28_RS11640 cf7f158fed1b56083a96ca226a3fb6d5 415 Pfam PF05977 Transmembrane secretion effector 9 394 2.9E-36 T 06-07-2017 IPR010290 Transmembrane secretion effector CDO28_RS11640 cf7f158fed1b56083a96ca226a3fb6d5 415 Gene3D G3DSA:1.20.1250.20 223 399 1.7E-8 T 06-07-2017 CDO28_RS11640 cf7f158fed1b56083a96ca226a3fb6d5 415 Gene3D G3DSA:1.20.1250.20 21 200 7.8E-21 T 06-07-2017 CDO28_RS11640 cf7f158fed1b56083a96ca226a3fb6d5 415 SUPERFAMILY SSF103473 20 402 3.53E-38 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS06745 0c8b51227a252ea127c308aab666fb87 277 Pfam PF06078 Bacterial protein of unknown function (DUF937) 6 137 5.3E-23 T 06-07-2017 IPR009282 Protein of unknown function DUF937 CDO28_RS32250 9bbfe345801a8ffe7de3dc57f10f427a 426 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 130 355 2.1E-87 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS32250 9bbfe345801a8ffe7de3dc57f10f427a 426 SUPERFAMILY SSF53474 124 308 1.59E-15 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS32250 9bbfe345801a8ffe7de3dc57f10f427a 426 PIRSF PIRSF033909 22 386 5.3E-155 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS32250 9bbfe345801a8ffe7de3dc57f10f427a 426 Gene3D G3DSA:3.40.50.1820 143 356 1.6E-18 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 Gene3D G3DSA:1.10.1040.10 280 485 2.9E-72 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 215 459 1.3E-84 T 06-07-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 28 187 2.2E-42 T 06-07-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 216 228 - T 06-07-2017 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 SUPERFAMILY SSF51735 2 279 1.81E-98 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 Gene3D G3DSA:3.40.50.720 4 279 1.1E-110 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 SUPERFAMILY SSF48179 281 485 7.82E-65 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 PRINTS PR00084 Mannitol dehydrogenase signature 246 261 2.9E-19 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 PRINTS PR00084 Mannitol dehydrogenase signature 216 229 2.9E-19 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 PRINTS PR00084 Mannitol dehydrogenase signature 178 191 2.9E-19 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS29970 5c39d94f77709fcdc3d0ef07ecfddae8 487 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 2.9E-19 T 06-07-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 Gene3D G3DSA:2.60.120.10 143 239 4.2E-26 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 Pfam PF07883 Cupin domain 174 233 6.7E-12 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 Gene3D G3DSA:1.10.260.40 53 123 2.0E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 Pfam PF01381 Helix-turn-helix 60 112 8.6E-15 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 SMART SM00530 59 114 5.8E-16 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 SUPERFAMILY SSF51182 120 234 6.85E-26 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS10115 72ce7351ff2da2566660f72b18dd80cf 243 SUPERFAMILY SSF47413 54 121 4.83E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS13795 03f70bfb5aa72c6b5697c45334b72d05 295 SUPERFAMILY SSF103481 40 138 1.96E-12 T 06-07-2017 CDO28_RS13795 03f70bfb5aa72c6b5697c45334b72d05 295 SUPERFAMILY SSF103481 187 279 2.48E-8 T 06-07-2017 CDO28_RS13795 03f70bfb5aa72c6b5697c45334b72d05 295 Pfam PF00892 EamA-like transporter family 5 135 2.3E-16 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS13795 03f70bfb5aa72c6b5697c45334b72d05 295 Pfam PF00892 EamA-like transporter family 149 278 6.0E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS19365 f045cc9d9d1231f574184240e9257ef1 149 SUPERFAMILY SSF53850 28 119 7.24E-7 T 06-07-2017 CDO28_RS19365 f045cc9d9d1231f574184240e9257ef1 149 Gene3D G3DSA:3.40.190.10 25 101 4.5E-9 T 06-07-2017 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 5 343 45.626 T 06-07-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 139 155 - T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 21 30 - T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 Gene3D G3DSA:3.20.20.210 6 340 8.4E-122 T 06-07-2017 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 6 340 7.2E-106 T 06-07-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 8 340 1.8E-121 T 06-07-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDO28_RS10635 f9bd7d913f6fa1e6f43a41daefe1c0cd 343 SUPERFAMILY SSF51726 7 341 1.11E-95 T 06-07-2017 CDO28_RS01085 57c2f0ea65501db2a3ec4346941c889a 230 Pfam PF04367 Protein of unknown function (DUF502) 70 177 7.9E-33 T 06-07-2017 IPR007462 Protein of unknown function DUF502 CDO28_RS17120 6e1c8da88ad99295d5111d34f6a8851e 62 SUPERFAMILY SSF54786 1 60 6.28E-19 T 06-07-2017 CDO28_RS17120 6e1c8da88ad99295d5111d34f6a8851e 62 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 5 59 1.4E-22 T 06-07-2017 IPR012933 HicA mRNA interferase family GO:0003729 CDO28_RS17120 6e1c8da88ad99295d5111d34f6a8851e 62 Gene3D G3DSA:3.30.920.30 1 60 2.5E-25 T 06-07-2017 CDO28_RS17310 1d0a21116e3aa211ded9ba131399f119 153 SUPERFAMILY SSF51316 6 128 6.8E-41 T 06-07-2017 IPR011057 Mss4-like CDO28_RS17310 1d0a21116e3aa211ded9ba131399f119 153 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 117 3.8E-21 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS17310 1d0a21116e3aa211ded9ba131399f119 153 Gene3D G3DSA:3.90.1590.10 5 129 2.6E-36 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS05065 ae7a27f72e1c68b376da3706bead2215 667 SUPERFAMILY SSF63829 334 514 3.99E-8 T 06-07-2017 CDO28_RS05065 ae7a27f72e1c68b376da3706bead2215 667 SUPERFAMILY SSF63829 549 629 3.99E-8 T 06-07-2017 CDO28_RS05065 ae7a27f72e1c68b376da3706bead2215 667 Gene3D G3DSA:2.120.10.30 550 590 3.1E-4 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS05065 ae7a27f72e1c68b376da3706bead2215 667 Pfam PF05787 Bacterial protein of unknown function (DUF839) 84 628 2.1E-206 T 06-07-2017 IPR008557 Protein of unknown function DUF839 CDO28_RS18645 d41c1c899a9b5da8b083c16a3aef5159 174 Gene3D G3DSA:3.40.630.30 20 145 4.0E-9 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS18645 d41c1c899a9b5da8b083c16a3aef5159 174 Pfam PF00583 Acetyltransferase (GNAT) family 56 145 1.5E-4 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS18645 d41c1c899a9b5da8b083c16a3aef5159 174 SUPERFAMILY SSF55729 22 146 3.54E-10 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 5 286 7.7E-166 T 06-07-2017 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 Pfam PF00005 ABC transporter 47 196 1.8E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 SMART SM00382 53 246 4.5E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 Gene3D G3DSA:3.10.580.10 298 343 8.8E-4 T 06-07-2017 CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 Gene3D G3DSA:3.40.50.300 43 270 4.6E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15205 82cd410ff3310bc0fa12bdbf74d3888b 349 SUPERFAMILY SSF52540 44 277 1.06E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19690 076d5de6bc65cd5c682a5e6894246a8d 223 Pfam PF16867 Dimethlysulfonioproprionate lyase 25 189 1.3E-48 T 06-07-2017 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 CDO28_RS19690 076d5de6bc65cd5c682a5e6894246a8d 223 Gene3D G3DSA:2.60.120.10 105 195 1.9E-9 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS19690 076d5de6bc65cd5c682a5e6894246a8d 223 SUPERFAMILY SSF51182 116 200 2.97E-11 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 Gene3D G3DSA:3.90.79.10 2 135 5.4E-31 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 SUPERFAMILY SSF55811 6 136 3.38E-32 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 PRINTS PR00502 NUDIX hydrolase family signature 34 48 5.5E-7 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 PRINTS PR00502 NUDIX hydrolase family signature 48 63 5.5E-7 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS04970 5f015ced4423dd26d6528041bbe4c6e0 154 Pfam PF00293 NUDIX domain 9 121 1.6E-19 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS13865 3f7edbdfa2f61a4476ac1f1461101447 181 Pfam PF00156 Phosphoribosyl transferase domain 14 162 1.3E-24 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS13865 3f7edbdfa2f61a4476ac1f1461101447 181 SUPERFAMILY SSF53271 9 178 3.15E-48 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS13865 3f7edbdfa2f61a4476ac1f1461101447 181 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 11 176 3.5E-51 T 06-07-2017 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CDO28_RS13865 3f7edbdfa2f61a4476ac1f1461101447 181 Gene3D G3DSA:3.40.50.2020 5 178 4.3E-64 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS05225 9cb440b39a8106b0f08dcf20ad7b7875 158 Pfam PF07886 BA14K-like protein 125 154 2.5E-15 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 68 170 7.1E-43 T 06-07-2017 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 ProSitePatterns PS01068 OmpA-like domain. 103 147 - T 06-07-2017 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 Gene3D G3DSA:3.30.1330.60 58 168 1.0E-36 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 Pfam PF00691 OmpA family 70 165 4.3E-22 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 PRINTS PR01021 OMPA domain signature 71 93 2.7E-16 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 PRINTS PR01021 OMPA domain signature 101 116 2.7E-16 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 PRINTS PR01021 OMPA domain signature 116 132 2.7E-16 T 06-07-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDO28_RS13430 1b95048c8ed805274357280a42f48e73 176 SUPERFAMILY SSF103088 59 171 1.7E-36 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS17625 d3c0af2654e9bfcfea59aff55b5b62e2 319 Pfam PF01925 Sulfite exporter TauE/SafE 70 305 5.7E-42 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 Gene3D G3DSA:1.10.10.60 213 268 4.5E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 SUPERFAMILY SSF46689 214 264 1.79E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 297 8.5E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 313 8.5E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 Gene3D G3DSA:1.10.10.60 269 315 1.9E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 309 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 SUPERFAMILY SSF46689 267 316 1.03E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 Pfam PF12833 Helix-turn-helix domain 237 314 3.5E-17 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 SMART SM00342 231 313 2.2E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 SUPERFAMILY SSF51215 24 90 3.53E-6 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 Gene3D G3DSA:2.60.120.280 52 93 1.0E-5 T 06-07-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDO28_RS20030 bda5c3a21346ab1b41311ffa37af7c80 326 Pfam PF12852 Cupin 15 198 8.4E-41 T 06-07-2017 IPR032783 AraC-type transcription regulator, ligand-binding domain CDO28_RS04565 928247460481b475fb04b1fa51fda3cf 229 Pfam PF00308 Bacterial dnaA protein 104 198 7.9E-5 T 06-07-2017 IPR013317 Chromosomal replication initiator protein DnaA CDO28_RS04565 928247460481b475fb04b1fa51fda3cf 229 Gene3D G3DSA:1.10.8.60 155 220 1.2E-6 T 06-07-2017 CDO28_RS04565 928247460481b475fb04b1fa51fda3cf 229 SUPERFAMILY SSF52540 22 200 3.84E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04565 928247460481b475fb04b1fa51fda3cf 229 Gene3D G3DSA:3.40.50.300 4 150 9.3E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34295 1357212680519d8875cfc6ed8ce4f2d8 231 Pfam PF04335 VirB8 protein 17 223 2.3E-59 T 06-07-2017 IPR007430 Bacterial virulence protein VirB8 GO:0016020 CDO28_RS34295 1357212680519d8875cfc6ed8ce4f2d8 231 SUPERFAMILY SSF54427 89 225 1.05E-40 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS34295 1357212680519d8875cfc6ed8ce4f2d8 231 PIRSF PIRSF003299 3 226 3.4E-55 T 06-07-2017 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 CDO28_RS01995 43853c3546472eb1e6f52fd1adf6218c 137 SUPERFAMILY SSF53955 2 136 3.09E-39 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS01995 43853c3546472eb1e6f52fd1adf6218c 137 Gene3D G3DSA:1.20.141.10 2 136 7.9E-45 T 06-07-2017 CDO28_RS01995 43853c3546472eb1e6f52fd1adf6218c 137 Pfam PF09374 Predicted Peptidoglycan domain 86 137 3.4E-9 T 06-07-2017 IPR018537 Peptidoglycan binding domain CDO28_RS01995 43853c3546472eb1e6f52fd1adf6218c 137 Pfam PF05838 Glycosyl hydrolase 108 2 83 7.8E-25 T 06-07-2017 IPR008565 Protein of unknown function DUF847 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.9E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 SUPERFAMILY SSF46785 5 86 1.31E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 Pfam PF03466 LysR substrate binding domain 96 290 2.2E-32 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.2E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.2E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.2E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 SUPERFAMILY SSF53850 96 291 4.89E-34 T 06-07-2017 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 Gene3D G3DSA:1.10.10.10 3 84 1.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 Gene3D G3DSA:3.40.190.10 179 259 3.1E-19 T 06-07-2017 CDO28_RS19680 bae5b11144974f79c555fdd2f70422da 292 Gene3D G3DSA:3.40.190.10 96 178 9.8E-20 T 06-07-2017 CDO28_RS08905 7cf85077070176af50861bf1e71e0bea 95 SUPERFAMILY SSF54909 1 95 8.85E-34 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS08905 7cf85077070176af50861bf1e71e0bea 95 Pfam PF07045 Domain of unknown function (DUF1330) 3 95 1.7E-37 T 06-07-2017 IPR010753 Domain of unknown function DUF1330 CDO28_RS08905 7cf85077070176af50861bf1e71e0bea 95 Gene3D G3DSA:3.30.70.900 1 95 8.3E-38 T 06-07-2017 CDO28_RS30315 4d31255c92f2673af98a912143e2744e 154 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 19 146 6.5E-34 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS30315 4d31255c92f2673af98a912143e2744e 154 SUPERFAMILY SSF55961 8 147 1.41E-47 T 06-07-2017 CDO28_RS30315 4d31255c92f2673af98a912143e2744e 154 Gene3D G3DSA:3.30.530.20 1 149 4.8E-52 T 06-07-2017 IPR023393 START-like domain CDO28_RS04710 8c02bb58c652b2eafcaccd12d3aecee1 308 SUPERFAMILY SSF51735 3 170 5.48E-40 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04710 8c02bb58c652b2eafcaccd12d3aecee1 308 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 113 2.3E-17 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS04710 8c02bb58c652b2eafcaccd12d3aecee1 308 Gene3D G3DSA:3.40.50.720 3 194 2.9E-34 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 Gene3D G3DSA:3.40.309.10 263 451 1.7E-70 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 Gene3D G3DSA:3.40.605.10 6 262 1.9E-91 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 474 1.7E-243 T 06-07-2017 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 249 256 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 Pfam PF00171 Aldehyde dehydrogenase family 16 476 2.4E-170 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 487 59.564 T 06-07-2017 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CDO28_RS05805 e6cb20208ed65278ab9db0b919a97c05 487 SUPERFAMILY SSF53720 6 483 5.11E-166 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 133 142 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 19 94 8.2E-21 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 SUPERFAMILY SSF52374 116 465 5.63E-84 T 06-07-2017 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 SMART SM01016 5 94 1.1E-31 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 SUPERFAMILY SSF55190 7 114 2.22E-21 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 SMART SM00836 454 584 4.8E-52 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Gene3D G3DSA:1.10.730.10 460 584 1.8E-35 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Pfam PF00750 tRNA synthetases class I (R) 314 417 1.9E-5 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Pfam PF00750 tRNA synthetases class I (R) 119 179 2.9E-12 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 SUPERFAMILY SSF47323 448 584 4.97E-34 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Pfam PF05746 DALR anticodon binding domain 454 584 4.4E-32 T 06-07-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Gene3D G3DSA:3.40.50.620 117 459 9.9E-96 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 584 24.099 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 Gene3D G3DSA:3.30.1360.70 2 111 2.8E-27 T 06-07-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 13 584 1.7E-108 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 1.4E-24 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 1.4E-24 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 1.4E-24 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS02750 a4472bb953181062452bf38aee6d06d2 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 323 344 1.4E-24 T 06-07-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDO28_RS34015 d952688ff1e974f9deea52d7dc42dbc4 349 Pfam PF02661 Fic/DOC family 62 170 1.7E-14 T 06-07-2017 IPR003812 Fido domain CDO28_RS34015 d952688ff1e974f9deea52d7dc42dbc4 349 SUPERFAMILY SSF140931 48 224 3.14E-26 T 06-07-2017 IPR003812 Fido domain CDO28_RS34015 d952688ff1e974f9deea52d7dc42dbc4 349 Gene3D G3DSA:1.10.3290.10 9 224 1.8E-46 T 06-07-2017 IPR003812 Fido domain CDO28_RS17305 71f24d3ab0eb2d747a7bd608f81261a9 239 Gene3D G3DSA:1.25.40.10 139 239 4.4E-34 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17305 71f24d3ab0eb2d747a7bd608f81261a9 239 SUPERFAMILY SSF48452 61 235 1.71E-61 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS17305 71f24d3ab0eb2d747a7bd608f81261a9 239 Pfam PF06041 Bacterial protein of unknown function (DUF924) 66 236 2.8E-56 T 06-07-2017 IPR010323 Protein of unknown function DUF924 CDO28_RS17305 71f24d3ab0eb2d747a7bd608f81261a9 239 Gene3D G3DSA:1.20.58.320 61 138 2.1E-23 T 06-07-2017 CDO28_RS12915 c6b2b0485a5c848704081a1c80218bf9 802 SUPERFAMILY SSF56059 40 233 1.91E-15 T 06-07-2017 CDO28_RS12915 c6b2b0485a5c848704081a1c80218bf9 802 SUPERFAMILY SSF56059 338 458 1.91E-15 T 06-07-2017 CDO28_RS12915 c6b2b0485a5c848704081a1c80218bf9 802 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 521 801 3.9E-56 T 06-07-2017 IPR007296 Domain of unknown function DUF403 CDO28_RS12915 c6b2b0485a5c848704081a1c80218bf9 802 Pfam PF14403 Circularly permuted ATP-grasp type 2 95 473 1.5E-140 T 06-07-2017 IPR025841 Circularly permuted ATP-grasp type 2 CDO28_RS12695 193918a9fe00467f2c4d5133e93925e9 234 SUPERFAMILY SSF158682 76 228 7.85E-23 T 06-07-2017 IPR029024 TerB-like CDO28_RS12695 193918a9fe00467f2c4d5133e93925e9 234 Gene3D G3DSA:1.10.3680.10 69 228 2.6E-16 T 06-07-2017 IPR029024 TerB-like CDO28_RS12695 193918a9fe00467f2c4d5133e93925e9 234 Pfam PF04391 Protein of unknown function (DUF533) 37 227 1.3E-55 T 06-07-2017 IPR007486 Inner membrane protein YebE CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 Gene3D G3DSA:3.40.800.10 19 310 1.5E-91 T 06-07-2017 IPR023696 Ureohydrolase domain CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 06-07-2017 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 PIRSF PIRSF036979 22 312 1.2E-81 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 TIGRFAM TIGR01230 agmatinase: agmatinase 40 307 1.2E-66 T 06-07-2017 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 SUPERFAMILY SSF52768 22 309 1.12E-86 T 06-07-2017 CDO28_RS04275 fe3fc7b41c04a6670c1c7a8fad5b3a56 318 Pfam PF00491 Arginase family 44 306 1.8E-79 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 Gene3D G3DSA:1.10.155.10 12 68 9.2E-4 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 Pfam PF01739 CheR methyltransferase, SAM binding domain 71 242 1.6E-40 T 06-07-2017 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 SMART SM00138 4 268 2.6E-47 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 SUPERFAMILY SSF47757 10 69 1.7E-5 T 06-07-2017 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 Gene3D G3DSA:1.25.40.10 314 411 6.5E-11 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 SUPERFAMILY SSF53335 71 262 7.31E-44 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 SUPERFAMILY SSF48452 322 410 8.95E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 Gene3D G3DSA:3.40.50.150 70 258 3.7E-56 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 PRINTS PR00996 Glutamate methyltransferase family signature 207 221 6.0E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 PRINTS PR00996 Glutamate methyltransferase family signature 226 249 6.0E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 PRINTS PR00996 Glutamate methyltransferase family signature 63 75 6.0E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 PRINTS PR00996 Glutamate methyltransferase family signature 135 151 6.0E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS24815 7c141de3b80b6175d244325a6ab5d7de 453 PRINTS PR00996 Glutamate methyltransferase family signature 103 123 6.0E-23 T 06-07-2017 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CDO28_RS16335 39ed3a20a8d49a981414f9f39e8498b4 179 Pfam PF01464 Transglycosylase SLT domain 62 160 1.2E-22 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS16335 39ed3a20a8d49a981414f9f39e8498b4 179 SUPERFAMILY SSF53955 40 176 3.66E-34 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS16335 39ed3a20a8d49a981414f9f39e8498b4 179 Gene3D G3DSA:1.10.530.10 55 160 1.7E-32 T 06-07-2017 CDO28_RS25370 06542216c40bcb5e9c4a29bac96dfcf2 392 Gene3D G3DSA:1.10.3720.10 14 40 2.1E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25370 06542216c40bcb5e9c4a29bac96dfcf2 392 Gene3D G3DSA:1.10.3720.10 157 385 2.1E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25370 06542216c40bcb5e9c4a29bac96dfcf2 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 193 384 3.1E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25370 06542216c40bcb5e9c4a29bac96dfcf2 392 SUPERFAMILY SSF161098 172 380 3.01E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 SUPERFAMILY SSF51161 18 269 7.9E-68 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 Pfam PF06426 Serine acetyltransferase, N-terminal 19 123 2.9E-36 T 06-07-2017 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 Gene3D G3DSA:2.160.10.10 138 259 1.3E-32 T 06-07-2017 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 SMART SM00971 19 123 1.2E-57 T 06-07-2017 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 212 240 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 Gene3D G3DSA:1.10.3130.10 16 137 3.2E-51 T 06-07-2017 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 92 252 3.1E-69 T 06-07-2017 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 CDO28_RS02960 4599d7eb435989986b02d2b85ebd0d8b 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 203 237 1.1E-7 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS27325 38906f77dfe4e7259d7cfab0a9df3509 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 325 4.6E-45 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS26365 5882a27f11d67d44571d8e9729cf4379 339 Gene3D G3DSA:3.40.50.10490 193 337 1.9E-13 T 06-07-2017 CDO28_RS26365 5882a27f11d67d44571d8e9729cf4379 339 Pfam PF01380 SIS domain 203 310 7.9E-7 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS26365 5882a27f11d67d44571d8e9729cf4379 339 Gene3D G3DSA:3.40.50.10490 28 170 4.3E-15 T 06-07-2017 CDO28_RS26365 5882a27f11d67d44571d8e9729cf4379 339 SUPERFAMILY SSF53697 17 337 1.95E-29 T 06-07-2017 CDO28_RS01370 1155970c3c87341220b4985105452adf 99 Gene3D G3DSA:3.40.1350.10 4 53 1.3E-4 T 06-07-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 CDO28_RS24445 62fb77c10fe71d9fc5267b1b956d6ac3 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 61 2.7E-7 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS24445 62fb77c10fe71d9fc5267b1b956d6ac3 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 6 63 7.1E-13 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Gene3D G3DSA:3.40.50.150 26 206 9.7E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 25 41 1.5E-5 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 196 209 1.5E-5 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 135 149 1.5E-5 T 06-07-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Gene3D G3DSA:3.90.120.10 361 407 5.7E-18 T 06-07-2017 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Gene3D G3DSA:3.90.120.10 577 648 5.7E-18 T 06-07-2017 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Gene3D G3DSA:3.90.120.10 207 249 5.7E-18 T 06-07-2017 CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 SUPERFAMILY SSF53335 372 404 2.61E-57 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 SUPERFAMILY SSF53335 590 654 2.61E-57 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 SUPERFAMILY SSF53335 26 290 2.61E-57 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Pfam PF00145 C-5 cytosine-specific DNA methylase 561 654 1.4E-4 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS01350 ec9639798ef414edee5c85381d58df92 669 Pfam PF00145 C-5 cytosine-specific DNA methylase 26 207 3.1E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS23190 f8ac12d295319f5b27dbee65ce162d13 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 363 1.7E-64 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS23190 f8ac12d295319f5b27dbee65ce162d13 367 Gene3D G3DSA:2.40.50.100 177 209 7.9E-12 T 06-07-2017 CDO28_RS23190 f8ac12d295319f5b27dbee65ce162d13 367 Gene3D G3DSA:2.40.50.100 71 102 7.9E-12 T 06-07-2017 CDO28_RS23190 f8ac12d295319f5b27dbee65ce162d13 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 282 2.2E-28 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS23190 f8ac12d295319f5b27dbee65ce162d13 367 SUPERFAMILY SSF111369 58 283 1.83E-24 T 06-07-2017 CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 305 8.5E-155 T 06-07-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 Gene3D G3DSA:3.90.1670.10 23 304 7.1E-78 T 06-07-2017 IPR024064 FdhE-like CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 SUPERFAMILY SSF144020 21 304 1.57E-81 T 06-07-2017 IPR024064 FdhE-like CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 Pfam PF04216 Protein involved in formate dehydrogenase formation 19 304 2.7E-91 T 06-07-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 Hamap MF_00611 Protein FdhE [fdhE]. 3 306 39.433 T 06-07-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CDO28_RS20705 85f1c4b23ec5ee6c7304cdebe8b4559f 306 PIRSF PIRSF018296 1 306 3.0E-100 T 06-07-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CDO28_RS23250 fd76132708f45dc04d7b36db4f5363fe 158 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 68 158 1.0E-46 T 06-07-2017 IPR004914 Antirestriction protein CDO28_RS23250 fd76132708f45dc04d7b36db4f5363fe 158 Pfam PF03230 Antirestriction protein 68 158 1.4E-33 T 06-07-2017 IPR004914 Antirestriction protein CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 Gene3D G3DSA:3.30.360.10 145 370 1.6E-49 T 06-07-2017 CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 148 261 3.3E-12 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 Gene3D G3DSA:3.40.50.720 3 144 5.9E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 133 2.5E-27 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 SUPERFAMILY SSF51735 4 161 1.06E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08775 738b1ff67685ac9ae8692b1402566cf5 376 SUPERFAMILY SSF55347 138 317 1.64E-39 T 06-07-2017 CDO28_RS19540 903c4b79b82097347114edfed60433aa 161 Gene3D G3DSA:3.40.630.30 2 137 2.3E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS19540 903c4b79b82097347114edfed60433aa 161 Pfam PF00583 Acetyltransferase (GNAT) family 60 128 2.0E-10 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS19540 903c4b79b82097347114edfed60433aa 161 SUPERFAMILY SSF55729 1 143 3.66E-25 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 SUPERFAMILY SSF53649 3 116 2.09E-72 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 SUPERFAMILY SSF53649 236 406 2.09E-72 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 Hamap MF_00740 Phosphopentomutase [deoB]. 1 406 52.819 T 06-07-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 Gene3D G3DSA:3.40.720.10 239 406 1.3E-71 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 Gene3D G3DSA:3.40.720.10 2 115 1.3E-71 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 Gene3D G3DSA:3.30.70.1250 116 235 3.5E-49 T 06-07-2017 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 PIRSF PIRSF001491 1 406 5.3E-153 T 06-07-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 Pfam PF01676 Metalloenzyme superfamily 3 395 7.8E-38 T 06-07-2017 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 SUPERFAMILY SSF143856 119 235 1.96E-48 T 06-07-2017 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CDO28_RS09920 51dff8b5d42dd625486b15e6e8fe6338 406 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 402 3.7E-148 T 06-07-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 289 453 6.3E-57 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SUPERFAMILY SSF52172 152 287 2.42E-25 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SUPERFAMILY SSF55073 295 451 1.8E-52 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SUPERFAMILY SSF52172 2 135 1.02E-41 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SMART SM00448 154 266 5.2E-12 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SMART SM00448 3 116 1.7E-43 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Pfam PF00072 Response regulator receiver domain 5 116 6.8E-29 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Pfam PF00072 Response regulator receiver domain 156 265 3.3E-14 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 SMART SM00267 279 453 9.7E-67 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Gene3D G3DSA:3.30.70.270 292 452 1.2E-58 T 06-07-2017 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Pfam PF00990 Diguanylate cyclase, GGDEF domain 290 449 1.1E-49 T 06-07-2017 IPR000160 GGDEF domain CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Gene3D G3DSA:3.40.50.2300 151 280 1.2E-24 T 06-07-2017 CDO28_RS03980 cbdea3ecc5beae6e30e6550f3a5411af 455 Gene3D G3DSA:3.40.50.2300 3 128 1.5E-43 T 06-07-2017 CDO28_RS21560 8c0fe2549a750a178f2c41d610c24929 127 SUPERFAMILY SSF88723 2 118 3.08E-12 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS21560 8c0fe2549a750a178f2c41d610c24929 127 Pfam PF01850 PIN domain 2 113 3.6E-6 T 06-07-2017 IPR002716 PIN domain CDO28_RS21560 8c0fe2549a750a178f2c41d610c24929 127 Gene3D G3DSA:3.40.50.1010 2 117 6.9E-4 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS23880 05a5523f36b2adc062f833b864a2b12c 145 SUPERFAMILY SSF75169 32 143 7.95E-16 T 06-07-2017 IPR027396 DsrEFH-like CDO28_RS23880 05a5523f36b2adc062f833b864a2b12c 145 Gene3D G3DSA:3.40.1260.10 53 143 2.8E-8 T 06-07-2017 IPR027396 DsrEFH-like CDO28_RS23880 05a5523f36b2adc062f833b864a2b12c 145 Pfam PF02635 DsrE/DsrF-like family 55 143 3.1E-10 T 06-07-2017 IPR003787 Sulphur relay, DsrE/F-like protein CDO28_RS11435 e8a5c8ebeab417965f43d50a8f6129f4 169 SUPERFAMILY SSF55826 8 167 7.46E-50 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS11435 e8a5c8ebeab417965f43d50a8f6129f4 169 Pfam PF04073 Aminoacyl-tRNA editing domain 28 154 8.0E-26 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS11435 e8a5c8ebeab417965f43d50a8f6129f4 169 Gene3D G3DSA:3.90.960.10 2 168 1.2E-60 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS26535 15a81a51f03a34551d2d24268f1a94bc 365 Pfam PF00534 Glycosyl transferases group 1 201 338 2.2E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS26535 15a81a51f03a34551d2d24268f1a94bc 365 SUPERFAMILY SSF53756 14 360 9.77E-48 T 06-07-2017 CDO28_RS26535 15a81a51f03a34551d2d24268f1a94bc 365 Gene3D G3DSA:3.40.50.2000 203 338 2.5E-19 T 06-07-2017 CDO28_RS14520 ecf55657c0d2cb48fe096d64916b7f9a 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 324 1.7E-44 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS03415 7e18d354735b44b708f5605070336509 649 SMART SM00763 24 385 1.6E-183 T 06-07-2017 IPR013153 PrkA AAA domain CDO28_RS03415 7e18d354735b44b708f5605070336509 649 SUPERFAMILY SSF52540 80 377 1.53E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03415 7e18d354735b44b708f5605070336509 649 Gene3D G3DSA:3.40.50.300 248 334 2.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03415 7e18d354735b44b708f5605070336509 649 Gene3D G3DSA:3.40.50.300 80 163 2.1E-5 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03415 7e18d354735b44b708f5605070336509 649 PIRSF PIRSF000549 1 649 2.9E-277 T 06-07-2017 IPR016230 Serine-protein kinase, PrkA GO:0004672 CDO28_RS03415 7e18d354735b44b708f5605070336509 649 Pfam PF08298 PrkA AAA domain 24 385 1.2E-177 T 06-07-2017 IPR013153 PrkA AAA domain CDO28_RS03415 7e18d354735b44b708f5605070336509 649 Pfam PF06798 PrkA serine protein kinase C-terminal domain 388 641 8.1E-76 T 06-07-2017 IPR010650 PrkA C-terminal domain CDO28_RS02145 907918465f01add9c13f1e4c7ee3b04d 103 SUPERFAMILY SSF101386 14 102 1.41E-16 T 06-07-2017 CDO28_RS02145 907918465f01add9c13f1e4c7ee3b04d 103 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 94 6.7E-5 T 06-07-2017 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CDO28_RS02145 907918465f01add9c13f1e4c7ee3b04d 103 PIRSF PIRSF036522 1 103 1.3E-63 T 06-07-2017 IPR011315 NTP pyrophosphohydrolase MazG-related, Rhizobiaceae-type CDO28_RS02145 907918465f01add9c13f1e4c7ee3b04d 103 Gene3D G3DSA:1.10.287.1080 10 96 1.9E-13 T 06-07-2017 CDO28_RS22540 d04f42874f2776e4c46940a4e64ad9b1 167 PIRSF PIRSF006105 15 167 8.6E-52 T 06-07-2017 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CDO28_RS22540 d04f42874f2776e4c46940a4e64ad9b1 167 Gene3D G3DSA:4.10.1020.10 74 141 2.8E-31 T 06-07-2017 IPR027406 Periplasmic nitrate reductase NapB subunit, heme binding domain CDO28_RS22540 d04f42874f2776e4c46940a4e64ad9b1 167 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 34 155 4.5E-47 T 06-07-2017 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CDO28_RS22540 d04f42874f2776e4c46940a4e64ad9b1 167 SUPERFAMILY SSF48695 44 159 9.01E-46 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 Pfam PF00365 Phosphofructokinase 5 293 1.8E-35 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 Hamap MF_01977 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 2 399 62.789 T 06-07-2017 IPR011405 Pyrophosphate-dependent phosphofructokinase SMc01852 type GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 PIRSF PIRSF036484 1 403 1.2E-246 T 06-07-2017 IPR011405 Pyrophosphate-dependent phosphofructokinase SMc01852 type GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 SUPERFAMILY SSF53784 3 391 7.59E-72 T 06-07-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 184 200 6.4E-15 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 128 6.4E-15 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 6.4E-15 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 145 162 6.4E-15 T 06-07-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CDO28_RS16320 20094d98bc6bc2deb66a8694826d6bb7 404 Gene3D G3DSA:3.40.50.450 3 257 1.6E-51 T 06-07-2017 CDO28_RS03625 bfc5e774652e3db36fa3103e1ab10bc8 206 SUPERFAMILY SSF52166 1 205 2.49E-71 T 06-07-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 CDO28_RS03625 bfc5e774652e3db36fa3103e1ab10bc8 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 31.097 T 06-07-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03625 bfc5e774652e3db36fa3103e1ab10bc8 206 Gene3D G3DSA:3.40.1370.10 58 205 7.4E-54 T 06-07-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 CDO28_RS03625 bfc5e774652e3db36fa3103e1ab10bc8 206 Pfam PF00573 Ribosomal protein L4/L1 family 16 204 1.1E-63 T 06-07-2017 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 CDO28_RS03625 bfc5e774652e3db36fa3103e1ab10bc8 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 203 1.2E-69 T 06-07-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 Gene3D G3DSA:2.150.10.10 31 59 1.6E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 Gene3D G3DSA:2.150.10.10 104 217 1.6E-21 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 SUPERFAMILY SSF49899 214 460 1.58E-53 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 SUPERFAMILY SSF51120 10 218 8.76E-27 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 Pfam PF00722 Glycosyl hydrolases family 16 267 455 7.5E-33 T 06-07-2017 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 PRINTS PR00313 NodO calcium binding signature 124 132 1.2E-7 T 06-07-2017 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 PRINTS PR00313 NodO calcium binding signature 53 61 1.2E-7 T 06-07-2017 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 PRINTS PR00313 NodO calcium binding signature 31 42 1.2E-7 T 06-07-2017 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 PRINTS PR00313 NodO calcium binding signature 133 142 1.2E-7 T 06-07-2017 CDO28_RS28020 9fc0dad15708a0ab2e5c6b14aad06d0c 465 Gene3D G3DSA:2.60.120.200 218 459 3.6E-60 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 Pfam PF13533 Biotin-lipoyl like 87 118 8.9E-7 T 06-07-2017 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 331 352 1.5E-27 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 48 71 1.5E-27 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 90 110 1.5E-27 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 388 411 1.5E-27 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 388 1.5E-27 T 06-07-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 Pfam PF13437 HlyD family secretion protein 319 410 5.2E-13 T 06-07-2017 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 Gene3D G3DSA:2.40.50.100 82 112 5.2E-13 T 06-07-2017 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 Gene3D G3DSA:2.40.50.100 316 351 5.2E-13 T 06-07-2017 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 43 491 7.7E-96 T 06-07-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CDO28_RS25750 ace40b11c86fb577fbecc30c0c436243 491 ProSitePatterns PS00543 HlyD family secretion proteins signature. 455 477 - T 06-07-2017 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 CDO28_RS25395 e7508c38fadffc03b021e61f0795195d 349 Pfam PF01636 Phosphotransferase enzyme family 40 272 2.2E-33 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS25395 e7508c38fadffc03b021e61f0795195d 349 Gene3D G3DSA:3.90.1200.10 133 336 1.6E-32 T 06-07-2017 CDO28_RS25395 e7508c38fadffc03b021e61f0795195d 349 SUPERFAMILY SSF56112 25 333 6.42E-55 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS32070 3ab6a47926560be1f13606a627eb1370 311 Pfam PF00701 Dihydrodipicolinate synthetase family 9 229 1.7E-14 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32070 3ab6a47926560be1f13606a627eb1370 311 Gene3D G3DSA:3.20.20.70 8 298 6.9E-39 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS32070 3ab6a47926560be1f13606a627eb1370 311 SUPERFAMILY SSF51569 8 295 6.7E-41 T 06-07-2017 CDO28_RS32070 3ab6a47926560be1f13606a627eb1370 311 SMART SM01130 7 303 9.6E-18 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS32070 3ab6a47926560be1f13606a627eb1370 311 PIRSF PIRSF001365 3 307 8.8E-56 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 SUPERFAMILY SSF55073 2 173 5.18E-45 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 Gene3D G3DSA:3.30.70.1230 6 169 1.1E-27 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 Gene3D G3DSA:3.40.50.10070 191 290 3.6E-5 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 SUPERFAMILY SSF48452 401 548 3.46E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 149 4.7E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 SUPERFAMILY SSF52964 189 292 3.92E-5 T 06-07-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDO28_RS12090 8e825b35c62004e6fab4c6e503632b95 590 Gene3D G3DSA:1.25.40.10 352 548 9.9E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 Pfam PF03600 Citrate transporter 17 194 4.0E-23 T 06-07-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 Pfam PF03600 Citrate transporter 426 588 1.8E-14 T 06-07-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 SUPERFAMILY SSF116726 304 382 4.97E-12 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 SUPERFAMILY SSF116726 213 286 6.67E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 Pfam PF02080 TrkA-C domain 220 284 4.2E-9 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 Gene3D G3DSA:3.30.70.1450 312 390 1.2E-13 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS18920 47b12f8ac4e4c3ff7de32473d8ac2356 592 Gene3D G3DSA:3.30.70.1450 217 295 4.5E-11 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 Pfam PF13378 Enolase C-terminal domain-like 170 381 8.0E-41 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 122 147 - T 06-07-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 51 147 2.0E-15 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 SMART SM00922 166 262 1.8E-11 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 Gene3D G3DSA:3.20.20.120 153 375 1.8E-57 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 SUPERFAMILY SSF51604 135 382 2.62E-56 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 SUPERFAMILY SSF54826 44 149 2.97E-28 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS22050 0801bfce287bd4d881248632e871c563 389 Gene3D G3DSA:3.30.390.10 4 152 1.7E-48 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS21825 abf2f388c1ab9a85fc5d1bda06e5831f 99 Pfam PF06169 Protein of unknown function (DUF982) 9 76 2.4E-17 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS13605 c511327e2982a2aa4004658880dd7c8e 197 SUPERFAMILY SSF51182 6 183 2.67E-53 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS13605 c511327e2982a2aa4004658880dd7c8e 197 Pfam PF05962 HutD 13 184 1.3E-58 T 06-07-2017 IPR010282 Uncharacterised protein family HutD/Ves CDO28_RS13605 c511327e2982a2aa4004658880dd7c8e 197 Gene3D G3DSA:2.60.120.10 13 112 2.3E-38 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS13605 c511327e2982a2aa4004658880dd7c8e 197 Gene3D G3DSA:2.60.120.10 113 194 5.4E-9 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 SUPERFAMILY SSF46561 1 61 7.98E-23 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 Pfam PF00831 Ribosomal L29 protein 5 60 1.4E-25 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 06-07-2017 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 Gene3D G3DSA:1.10.287.310 1 61 4.3E-29 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.6E-23 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS03590 5c0d8491edf10038e6569b6b9f97e8d3 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.771 T 06-07-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS23885 0457ce528c337f0286ded653a798503c 321 Gene3D G3DSA:3.60.15.10 52 278 3.1E-45 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23885 0457ce528c337f0286ded653a798503c 321 SUPERFAMILY SSF56281 48 294 9.83E-49 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23885 0457ce528c337f0286ded653a798503c 321 Pfam PF00753 Metallo-beta-lactamase superfamily 69 253 2.8E-19 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS23885 0457ce528c337f0286ded653a798503c 321 SMART SM00849 70 253 1.7E-23 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS07785 6c608ca578d8a2df99394780b65ccdd9 334 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 214 1.3E-45 T 06-07-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDO28_RS07785 6c608ca578d8a2df99394780b65ccdd9 334 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 323 5.5E-102 T 06-07-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDO28_RS07785 6c608ca578d8a2df99394780b65ccdd9 334 PIRSF PIRSF000267 1 334 6.5E-94 T 06-07-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDO28_RS16570 a2c144c02381a5e8e5c193f5233e5149 136 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 62 108 1.4E-16 T 06-07-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS16570 a2c144c02381a5e8e5c193f5233e5149 136 Gene3D G3DSA:1.20.1290.10 1 131 2.9E-37 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS16570 a2c144c02381a5e8e5c193f5233e5149 136 Pfam PF02627 Carboxymuconolactone decarboxylase family 47 124 2.7E-19 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS16570 a2c144c02381a5e8e5c193f5233e5149 136 SUPERFAMILY SSF69118 1 130 6.67E-35 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS15150 b86d0cd8e69e58abe439458e6acba03c 347 Gene3D G3DSA:1.10.3720.10 212 342 1.6E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15150 b86d0cd8e69e58abe439458e6acba03c 347 Gene3D G3DSA:1.10.3720.10 103 173 1.6E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15150 b86d0cd8e69e58abe439458e6acba03c 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 345 3.6E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15150 b86d0cd8e69e58abe439458e6acba03c 347 SUPERFAMILY SSF161098 209 330 6.8E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15150 b86d0cd8e69e58abe439458e6acba03c 347 SUPERFAMILY SSF161098 104 170 6.8E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 307 1.6E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 291 1.6E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 Gene3D G3DSA:1.10.10.60 206 261 3.2E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 Gene3D G3DSA:1.10.10.60 262 309 4.4E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 SMART SM00342 224 307 2.4E-27 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 SUPERFAMILY SSF46689 208 258 3.76E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 SUPERFAMILY SSF46689 261 310 6.72E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 303 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS27295 9065895e2ece757caee0159025fad513 314 Pfam PF12833 Helix-turn-helix domain 230 308 2.9E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS27075 02db2dc5e8dd6be7d62e78218ad92d24 200 Pfam PF01738 Dienelactone hydrolase family 85 182 4.3E-6 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 CDO28_RS27075 02db2dc5e8dd6be7d62e78218ad92d24 200 SUPERFAMILY SSF53474 6 199 2.75E-43 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS27075 02db2dc5e8dd6be7d62e78218ad92d24 200 Gene3D G3DSA:3.40.50.1820 8 199 6.8E-57 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS14235 d9914190255218eae8ae5174dd42813e 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 314 3.5E-29 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS15425 bf1ebb1b56505c514f2e0479d13d228f 156 Gene3D G3DSA:3.10.129.10 8 153 7.1E-36 T 06-07-2017 IPR029069 HotDog domain CDO28_RS15425 bf1ebb1b56505c514f2e0479d13d228f 156 SUPERFAMILY SSF54637 3 154 2.85E-30 T 06-07-2017 IPR029069 HotDog domain CDO28_RS15425 bf1ebb1b56505c514f2e0479d13d228f 156 Pfam PF01575 MaoC like domain 10 121 4.7E-12 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 Pfam PF01266 FAD dependent oxidoreductase 5 344 7.9E-51 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 Gene3D G3DSA:3.50.50.60 3 57 9.1E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 Gene3D G3DSA:3.50.50.60 99 215 9.1E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 Gene3D G3DSA:3.50.50.60 309 372 9.1E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 SUPERFAMILY SSF51905 3 216 3.08E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS26970 d94d1439f7acda0aafc10f679f3a5fd5 375 SUPERFAMILY SSF51905 309 370 3.08E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32185 3377e229f216757e2552831506e27ec0 276 Gene3D G3DSA:1.10.3720.10 7 263 3.5E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32185 3377e229f216757e2552831506e27ec0 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 268 4.6E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS32185 3377e229f216757e2552831506e27ec0 276 SUPERFAMILY SSF161098 7 276 4.58E-68 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS34540 9e599ea289aea57589bea870d17957ab 144 Gene3D G3DSA:3.30.1490.70 17 46 7.8E-7 T 06-07-2017 CDO28_RS34540 9e599ea289aea57589bea870d17957ab 144 Gene3D G3DSA:3.30.470.30 47 144 2.4E-25 T 06-07-2017 CDO28_RS34540 9e599ea289aea57589bea870d17957ab 144 Pfam PF01068 ATP dependent DNA ligase domain 36 144 1.8E-18 T 06-07-2017 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 CDO28_RS34540 9e599ea289aea57589bea870d17957ab 144 SUPERFAMILY SSF56091 15 144 6.58E-30 T 06-07-2017 CDO28_RS33860 fa498dba17e0c9158d525ad08fba84ee 104 SUPERFAMILY SSF54909 1 93 7.89E-29 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS33860 fa498dba17e0c9158d525ad08fba84ee 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 1.3E-21 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain CDO28_RS33860 fa498dba17e0c9158d525ad08fba84ee 104 Gene3D G3DSA:3.30.70.900 1 90 5.4E-27 T 06-07-2017 CDO28_RS29410 ba1f12e2840fa09d8eec4c1dd7c1a646 251 Gene3D G3DSA:3.20.20.370 27 246 3.3E-22 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS29410 ba1f12e2840fa09d8eec4c1dd7c1a646 251 Pfam PF01522 Polysaccharide deacetylase 35 152 3.2E-15 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS29410 ba1f12e2840fa09d8eec4c1dd7c1a646 251 SUPERFAMILY SSF88713 25 247 4.73E-29 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS12720 7b22b8b4b23b4ffd00c5a33d654e91cf 344 Pfam PF03824 High-affinity nickel-transport protein 78 342 1.7E-95 T 06-07-2017 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 CDO28_RS29425 e7cb341a8bc9a6f697bde34a950e8fc0 218 Pfam PF01810 LysE type translocator 22 209 6.1E-31 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS29425 e7cb341a8bc9a6f697bde34a950e8fc0 218 PIRSF PIRSF006324 1 212 4.5E-48 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS10295 8a1568e8e1d5362c6ee55bcb44fd5947 227 Pfam PF00005 ABC transporter 32 175 7.8E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS10295 8a1568e8e1d5362c6ee55bcb44fd5947 227 SUPERFAMILY SSF52540 16 221 3.25E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10295 8a1568e8e1d5362c6ee55bcb44fd5947 227 Gene3D G3DSA:3.40.50.300 16 219 3.1E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10295 8a1568e8e1d5362c6ee55bcb44fd5947 227 SMART SM00382 39 225 3.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS02930 18628723a574ecba3c715bca4e49aca5 111 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 9 104 1.3E-10 T 06-07-2017 IPR008407 Branched-chain amino acid transport, AzlD CDO28_RS25685 3abe21e26cfa675f6807da6887bbc0ea 316 Gene3D G3DSA:1.10.3720.10 92 308 7.8E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25685 3abe21e26cfa675f6807da6887bbc0ea 316 SUPERFAMILY SSF161098 94 298 1.3E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS25685 3abe21e26cfa675f6807da6887bbc0ea 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 316 9.7E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09230 b356e3a10fbd38d1530b4cd59071b8da 93 Pfam PF10262 Rdx family 6 79 2.7E-33 T 06-07-2017 IPR011893 Selenoprotein, Rdx type CDO28_RS09230 b356e3a10fbd38d1530b4cd59071b8da 93 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 7 79 3.8E-24 T 06-07-2017 IPR011893 Selenoprotein, Rdx type CDO28_RS09230 b356e3a10fbd38d1530b4cd59071b8da 93 Gene3D G3DSA:3.40.30.10 3 92 3.7E-44 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS09230 b356e3a10fbd38d1530b4cd59071b8da 93 SUPERFAMILY SSF52833 4 88 4.03E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS03035 ac83ad374a0d398f3390f10e1755f576 195 Gene3D G3DSA:3.40.140.10 19 115 2.9E-20 T 06-07-2017 CDO28_RS03035 ac83ad374a0d398f3390f10e1755f576 195 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 06-07-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CDO28_RS03035 ac83ad374a0d398f3390f10e1755f576 195 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 27 107 2.2E-8 T 06-07-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 CDO28_RS03035 ac83ad374a0d398f3390f10e1755f576 195 SUPERFAMILY SSF53927 20 146 9.6E-22 T 06-07-2017 IPR016193 Cytidine deaminase-like GO:0003824 CDO28_RS11385 2514d55763dd50ea06959507866b8653 220 Gene3D G3DSA:2.50.20.10 45 208 3.8E-21 T 06-07-2017 CDO28_RS11385 2514d55763dd50ea06959507866b8653 220 SUPERFAMILY SSF89392 45 208 2.28E-30 T 06-07-2017 IPR029046 Lipoprotein localisation LolA/LolB/LppX CDO28_RS11385 2514d55763dd50ea06959507866b8653 220 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 54 208 2.0E-44 T 06-07-2017 IPR004564 Outer membrane lipoprotein carrier protein LolA-like CDO28_RS00510 2438c3c6623e446fe437ae67da4ca57f 175 Gene3D G3DSA:2.30.110.10 23 175 5.2E-47 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS00510 2438c3c6623e446fe437ae67da4ca57f 175 SUPERFAMILY SSF50475 23 175 2.5E-45 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS00510 2438c3c6623e446fe437ae67da4ca57f 175 SMART SM00903 27 174 1.9E-51 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS00510 2438c3c6623e446fe437ae67da4ca57f 175 Pfam PF01613 Flavin reductase like domain 27 175 8.7E-32 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS06780 6acf552742386910f2a8dbc52a6c0e59 291 Gene3D G3DSA:3.40.50.1820 67 290 3.5E-60 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS06780 6acf552742386910f2a8dbc52a6c0e59 291 SUPERFAMILY SSF53474 66 288 5.51E-47 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS06780 6acf552742386910f2a8dbc52a6c0e59 291 Pfam PF01738 Dienelactone hydrolase family 79 289 3.5E-54 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 CDO28_RS03745 edb53006338d4d8b9ef11302a08337ce 206 SUPERFAMILY SSF52218 1 197 2.17E-52 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS03745 edb53006338d4d8b9ef11302a08337ce 206 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 200 31.849 T 06-07-2017 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 CDO28_RS03745 edb53006338d4d8b9ef11302a08337ce 206 Gene3D G3DSA:3.40.50.360 1 197 4.8E-64 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS03745 edb53006338d4d8b9ef11302a08337ce 206 Pfam PF02525 Flavodoxin-like fold 1 197 2.1E-50 T 06-07-2017 IPR003680 Flavodoxin-like fold CDO28_RS17835 78ddc3a2625bc20267bfcdfccfda199d 78 Pfam PF06169 Protein of unknown function (DUF982) 7 76 2.8E-23 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS27045 50126d867886b9534711bf7a53471020 307 Gene3D G3DSA:1.10.3720.10 88 302 1.1E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27045 50126d867886b9534711bf7a53471020 307 SUPERFAMILY SSF161098 89 293 8.28E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27045 50126d867886b9534711bf7a53471020 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 1.3E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28095 2c4fdc289c8bf590ef5fce31b96559fc 226 Pfam PF02397 Bacterial sugar transferase 29 219 1.7E-54 T 06-07-2017 IPR003362 Bacterial sugar transferase CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 SUPERFAMILY SSF57716 98 137 2.57E-9 T 06-07-2017 CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 19 128 4.4E-46 T 06-07-2017 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 96 131 3.8E-12 T 06-07-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 101 125 - T 06-07-2017 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 15 137 28.964 T 06-07-2017 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CDO28_RS00245 2a12a95289463e7725a2a140f0b4ffdd 139 SUPERFAMILY SSF109635 7 97 1.83E-31 T 06-07-2017 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 Gene3D G3DSA:1.10.10.60 247 294 1.4E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 193 237 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 SMART SM00342 208 291 1.7E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 SUPERFAMILY SSF46689 193 241 6.27E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 SUPERFAMILY SSF46689 245 292 1.93E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 Gene3D G3DSA:1.10.10.60 190 246 1.4E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 Pfam PF12833 Helix-turn-helix domain 214 292 5.7E-20 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25350 93c6b2c1adf266599746e0b0764647e9 299 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 287 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS00355 fda4fa9fe2220453e58fa38cd1794a71 412 Pfam PF07690 Major Facilitator Superfamily 25 365 3.1E-31 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS00355 fda4fa9fe2220453e58fa38cd1794a71 412 SUPERFAMILY SSF103473 14 399 2.88E-52 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS00355 fda4fa9fe2220453e58fa38cd1794a71 412 Gene3D G3DSA:1.20.1250.20 20 205 7.5E-27 T 06-07-2017 CDO28_RS00355 fda4fa9fe2220453e58fa38cd1794a71 412 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 18 396 2.6E-70 T 06-07-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 CDO28_RS04445 af53f25117dd2caf59c8210a97b9cb96 157 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 1.4E-47 T 06-07-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CDO28_RS04445 af53f25117dd2caf59c8210a97b9cb96 157 Pfam PF03477 ATP cone domain 50 135 1.4E-15 T 06-07-2017 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CDO28_RS04445 af53f25117dd2caf59c8210a97b9cb96 157 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 85.42 T 06-07-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 249 415 1.4E-12 T 06-07-2017 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 347 377 - T 06-07-2017 IPR030390 RNA methyltransferase TrmA, active site CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 SUPERFAMILY SSF50249 5 46 2.34E-7 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 SUPERFAMILY SSF53335 57 415 1.61E-52 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 Gene3D G3DSA:3.40.50.150 238 414 8.4E-37 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06185 8958537b92479c6aaf20d36b1e07161a 415 Gene3D G3DSA:2.40.50.140 5 67 3.5E-18 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS26800 254386700314e0c7cca2f6aa11989aa2 399 Gene3D G3DSA:1.10.3720.10 175 382 6.4E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26800 254386700314e0c7cca2f6aa11989aa2 399 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 205 388 4.5E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26800 254386700314e0c7cca2f6aa11989aa2 399 SUPERFAMILY SSF161098 181 377 9.81E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11200 3394a01cba4e375574c1c7f00138646a 136 Pfam PF10984 Protein of unknown function (DUF2794) 40 124 1.8E-40 T 06-07-2017 IPR021252 Protein of unknown function DUF2794 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 SUPERFAMILY SSF161098 22 274 7.52E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 361 556 1.5E-9 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 279 1.1E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 SUPERFAMILY SSF161098 302 554 4.19E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 Gene3D G3DSA:1.10.3720.10 23 281 4.7E-34 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07025 1ce44688268d22ac34e54f99c5e5f39b 560 Gene3D G3DSA:1.10.3720.10 307 558 2.3E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 Pfam PF00005 ABC transporter 387 483 1.1E-5 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 Gene3D G3DSA:3.40.50.300 744 894 2.9E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 SUPERFAMILY SSF52540 374 514 6.39E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 SUPERFAMILY SSF52540 798 885 6.39E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 Pfam PF00664 ABC transporter transmembrane region 88 310 2.3E-18 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 SUPERFAMILY SSF90123 2 55 3.66E-41 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 SUPERFAMILY SSF90123 82 349 3.66E-41 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 Gene3D G3DSA:1.20.1560.10 2 342 1.6E-37 T 06-07-2017 CDO28_RS26610 b0152c513f3dcc56854d4dc0db38f0f3 903 Gene3D G3DSA:3.40.50.300 373 484 7.8E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 Gene3D G3DSA:1.20.1560.10 17 319 1.5E-63 T 06-07-2017 CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 Pfam PF00664 ABC transporter transmembrane region 25 286 6.1E-39 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 SUPERFAMILY SSF52540 333 535 1.1E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 Gene3D G3DSA:3.40.50.300 339 542 4.0E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 SMART SM00382 364 553 1.6E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 SUPERFAMILY SSF90123 13 329 3.4E-55 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS05020 06117449fc146a35e0f17f8482797cc0 559 Pfam PF00005 ABC transporter 357 504 2.2E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS00470 5ef9326a735f675275d76c96acada517 101 SUPERFAMILY SSF141371 8 83 1.0E-6 T 06-07-2017 CDO28_RS00470 5ef9326a735f675275d76c96acada517 101 Pfam PF07238 PilZ domain 8 97 5.0E-9 T 06-07-2017 IPR009875 PilZ domain GO:0035438 CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Gene3D G3DSA:2.40.50.140 260 314 3.9E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 SUPERFAMILY SSF50331 236 332 1.02E-20 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 SMART SM00382 28 211 7.2E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Pfam PF08402 TOBE domain 255 323 3.3E-7 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Gene3D G3DSA:3.40.50.300 3 234 7.4E-77 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Gene3D G3DSA:2.40.50.100 242 259 3.4E-4 T 06-07-2017 CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Gene3D G3DSA:2.40.50.100 319 332 3.4E-4 T 06-07-2017 CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 SUPERFAMILY SSF52540 4 243 1.91E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS09635 1dea2cce08ad13193ea08ba31cd512e4 336 Pfam PF00005 ABC transporter 19 161 1.6E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12990 174a7e449240ecc75886b6ee3127c76e 120 Gene3D G3DSA:3.40.50.2300 3 119 1.7E-33 T 06-07-2017 CDO28_RS12990 174a7e449240ecc75886b6ee3127c76e 120 SUPERFAMILY SSF52172 3 119 2.42E-30 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS12990 174a7e449240ecc75886b6ee3127c76e 120 SMART SM00448 3 114 3.0E-20 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS12990 174a7e449240ecc75886b6ee3127c76e 120 Pfam PF00072 Response regulator receiver domain 5 114 2.9E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS18770 597d26af12ff51bab37227eaf3d731d5 218 SUPERFAMILY SSF53448 13 203 1.53E-29 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS18770 597d26af12ff51bab37227eaf3d731d5 218 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 206 27.767 T 06-07-2017 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 CDO28_RS18770 597d26af12ff51bab37227eaf3d731d5 218 Gene3D G3DSA:3.90.550.10 13 211 2.1E-51 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS18770 597d26af12ff51bab37227eaf3d731d5 218 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 12 204 1.9E-64 T 06-07-2017 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 CDO28_RS18770 597d26af12ff51bab37227eaf3d731d5 218 Pfam PF12804 MobA-like NTP transferase domain 13 174 1.8E-34 T 06-07-2017 IPR025877 MobA-like NTP transferase CDO28_RS11280 4cf654002a8f2ee7257136a7133e977d 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 256 1.0E-30 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS09805 1520afa0587c7721507a091ba3f932b6 355 PIRSF PIRSF018455 1 310 4.5E-145 T 06-07-2017 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 CDO28_RS09805 1520afa0587c7721507a091ba3f932b6 355 Pfam PF03411 Penicillin-insensitive murein endopeptidase 55 301 6.3E-104 T 06-07-2017 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 CDO28_RS09805 1520afa0587c7721507a091ba3f932b6 355 SUPERFAMILY SSF55166 40 303 2.35E-99 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS09805 1520afa0587c7721507a091ba3f932b6 355 Gene3D G3DSA:3.30.1380.10 40 302 8.6E-105 T 06-07-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 CDO28_RS14485 475946f74778380375f5d0044e15bce4 278 Gene3D G3DSA:3.40.710.10 2 275 2.6E-56 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS14485 475946f74778380375f5d0044e15bce4 278 Pfam PF13354 Beta-lactamase enzyme family 23 239 1.7E-47 T 06-07-2017 CDO28_RS14485 475946f74778380375f5d0044e15bce4 278 SUPERFAMILY SSF56601 1 276 4.11E-46 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS27450 c5157b83b8bd78be3a967ba2830f2977 193 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 6 175 2.1E-19 T 06-07-2017 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related CDO28_RS18785 e522b5593da0bba2d1820a306cf27cff 124 Pfam PF06155 Protein of unknown function (DUF971) 10 93 4.2E-28 T 06-07-2017 IPR010376 Domain of unknown function DUF971 Reactome: R-HSA-71262 CDO28_RS06020 68bf802d9344c02af7664ef874990a41 45 SUPERFAMILY SSF141523 14 42 4.58E-7 T 06-07-2017 CDO28_RS06020 68bf802d9344c02af7664ef874990a41 45 Gene3D G3DSA:2.40.440.10 15 42 6.0E-5 T 06-07-2017 CDO28_RS31000 1fb9cf7ec5aa2682b36e52a0db313ec1 236 Gene3D G3DSA:3.60.21.10 5 220 2.0E-25 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS31000 1fb9cf7ec5aa2682b36e52a0db313ec1 236 Pfam PF00149 Calcineurin-like phosphoesterase 4 203 5.7E-13 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS31000 1fb9cf7ec5aa2682b36e52a0db313ec1 236 PIRSF PIRSF008292 1 236 1.3E-101 T 06-07-2017 IPR016538 Uncharacterised conserved protein UCP008292 CDO28_RS31000 1fb9cf7ec5aa2682b36e52a0db313ec1 236 SUPERFAMILY SSF56300 4 222 4.36E-33 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 Gene3D G3DSA:1.20.120.530 116 253 1.5E-24 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 SMART SM00895 117 245 5.6E-17 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 SUPERFAMILY SSF46785 23 96 6.11E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 Pfam PF07729 FCD domain 119 244 1.7E-23 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 SUPERFAMILY SSF48008 116 251 6.02E-24 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 Gene3D G3DSA:1.10.10.10 20 93 2.3E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 SMART SM00345 33 92 2.4E-24 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 92 1.4E-21 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 66 5.4E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS06720 d20ba87c2d257766a1fa48c4537f6d73 275 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 66 82 5.4E-10 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Gene3D G3DSA:2.170.130.10 168 283 1.4E-33 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Gene3D G3DSA:2.40.170.20 284 550 2.5E-72 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Gene3D G3DSA:2.40.170.20 603 885 2.5E-72 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Pfam PF07715 TonB-dependent Receptor Plug Domain 171 278 5.7E-16 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Pfam PF07660 Secretin and TonB N terminus short domain 86 127 8.7E-9 T 06-07-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 144 885 7.0E-148 T 06-07-2017 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 SUPERFAMILY SSF56935 603 885 4.19E-90 T 06-07-2017 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 SUPERFAMILY SSF56935 169 550 4.19E-90 T 06-07-2017 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 SMART SM00965 76 128 4.5E-8 T 06-07-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 CDO28_RS17150 c5a87c879f83deb42fc21bc21409c204 885 Pfam PF00593 TonB dependent receptor 611 884 1.7E-30 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS27950 f236ae6a658411e3efe31f435cd63433 306 PIRSF PIRSF030050 2 306 4.8E-141 T 06-07-2017 IPR016943 Uncharacterised conserved protein UCP030050, HTH transcriptional regulator, BH1869 CDO28_RS27950 f236ae6a658411e3efe31f435cd63433 306 SMART SM00418 15 95 3.2E-5 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27950 f236ae6a658411e3efe31f435cd63433 306 Pfam PF01022 Bacterial regulatory protein, arsR family 24 68 5.3E-10 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27950 f236ae6a658411e3efe31f435cd63433 306 SUPERFAMILY SSF46785 14 216 2.77E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27950 f236ae6a658411e3efe31f435cd63433 306 Gene3D G3DSA:1.10.10.10 11 82 5.8E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31015 d0d5dbb8ce6843f34adb07c7d46606e7 57 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 1.1E-14 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS31015 d0d5dbb8ce6843f34adb07c7d46606e7 57 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 20.133 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS31015 d0d5dbb8ce6843f34adb07c7d46606e7 57 PIRSF PIRSF036466 1 55 2.2E-22 T 06-07-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDO28_RS13090 934d6d558aeb6fe80d9de18eb19188fd 151 Gene3D G3DSA:2.40.50.140 96 150 1.7E-12 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS13090 934d6d558aeb6fe80d9de18eb19188fd 151 Pfam PF01957 NfeD-like C-terminal, partner-binding 14 150 1.9E-32 T 06-07-2017 IPR002810 NfeD-like, C-terminal domain CDO28_RS02800 5903577d1fbd5d5c6dafbd92e36109b8 219 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 9 195 5.7E-38 T 06-07-2017 CDO28_RS02800 5903577d1fbd5d5c6dafbd92e36109b8 219 Gene3D G3DSA:3.40.50.150 10 212 5.8E-50 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02800 5903577d1fbd5d5c6dafbd92e36109b8 219 SUPERFAMILY SSF53335 1 204 8.91E-42 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14255 5165e1462bd72296a55c8dbede2c1a3b 390 Gene3D G3DSA:3.40.50.2300 159 323 5.1E-38 T 06-07-2017 CDO28_RS14255 5165e1462bd72296a55c8dbede2c1a3b 390 Pfam PF13458 Periplasmic binding protein 28 375 6.7E-58 T 06-07-2017 IPR028081 Leucine-binding protein domain CDO28_RS14255 5165e1462bd72296a55c8dbede2c1a3b 390 SUPERFAMILY SSF53822 26 380 7.24E-73 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS14255 5165e1462bd72296a55c8dbede2c1a3b 390 Gene3D G3DSA:3.40.50.2300 65 158 8.8E-5 T 06-07-2017 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 12 656 0.0 T 06-07-2017 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 290 344 - T 06-07-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 57 82 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 379 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 334 349 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 393 411 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 421 440 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 309 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 130 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 134 158 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 237 256 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 471 492 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 188 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 PRINTS PR01165 Cytochrome c oxidase subunit I signature 208 226 2.5E-92 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 66 514 3.5E-138 T 06-07-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 Gene3D G3DSA:1.20.210.10 51 583 1.3E-188 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29320 9a5ce626cc01c012e7837332bb9ca061 669 SUPERFAMILY SSF81442 53 570 4.19E-180 T 06-07-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS03290 c3df841330e29b7fe6f10c2c07a6bac2 150 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 19 124 30.701 T 06-07-2017 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDO28_RS03290 c3df841330e29b7fe6f10c2c07a6bac2 150 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 68 120 5.0E-26 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDO28_RS03290 c3df841330e29b7fe6f10c2c07a6bac2 150 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 45 120 3.1E-33 T 06-07-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDO28_RS03290 c3df841330e29b7fe6f10c2c07a6bac2 150 SUPERFAMILY SSF141734 22 126 1.02E-44 T 06-07-2017 CDO28_RS31340 471665fa76dd131a7259c19997890f07 368 Gene3D G3DSA:1.20.1090.10 174 368 9.5E-56 T 06-07-2017 CDO28_RS31340 471665fa76dd131a7259c19997890f07 368 SUPERFAMILY SSF56796 3 367 1.11E-99 T 06-07-2017 CDO28_RS31340 471665fa76dd131a7259c19997890f07 368 Gene3D G3DSA:3.40.50.1970 2 173 2.0E-38 T 06-07-2017 CDO28_RS31340 471665fa76dd131a7259c19997890f07 368 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 162 190 - T 06-07-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CDO28_RS31340 471665fa76dd131a7259c19997890f07 368 Pfam PF00465 Iron-containing alcohol dehydrogenase 7 360 2.6E-96 T 06-07-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 9.6E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 Pfam PF07729 FCD domain 110 231 1.8E-21 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 SMART SM00345 21 80 1.7E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 1.6E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 1.6E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 SUPERFAMILY SSF46785 12 84 1.16E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 SUPERFAMILY SSF48008 107 242 2.04E-22 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 Gene3D G3DSA:1.20.120.530 106 244 7.5E-23 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 SMART SM00895 109 233 3.9E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS01025 1a0a39d6302405d4c4748c9348531f92 249 Gene3D G3DSA:1.10.10.10 18 90 3.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00149 Fumarate lyase superfamily signature 231 258 1.2E-15 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00149 Fumarate lyase superfamily signature 272 288 1.2E-15 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 1.2E-15 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 1.2E-15 T 06-07-2017 IPR000362 Fumarate lyase family CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 SUPERFAMILY SSF48557 11 344 2.36E-66 T 06-07-2017 IPR008948 L-Aspartase-like GO:0003824 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 ProSitePatterns PS00163 Fumarate lyases signature. 272 281 - T 06-07-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00145 Argininosuccinate lyase family signature 231 255 4.3E-5 T 06-07-2017 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00145 Argininosuccinate lyase family signature 272 288 4.3E-5 T 06-07-2017 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 PRINTS PR00145 Argininosuccinate lyase family signature 101 123 4.3E-5 T 06-07-2017 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 Gene3D G3DSA:1.10.275.10 5 106 6.4E-28 T 06-07-2017 IPR024083 Fumarase/histidase, N-terminal CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 Pfam PF00206 Lyase 32 291 2.0E-32 T 06-07-2017 IPR022761 Fumarate lyase, N-terminal CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 11 343 3.6E-119 T 06-07-2017 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 CDO28_RS30160 2314d3b9f9e92dfd7d29771a350875e3 351 Gene3D G3DSA:1.20.200.10 107 344 1.9E-48 T 06-07-2017 CDO28_RS13960 b347ee91dde03004d420a059dc1a082f 169 PIRSF PIRSF033913 1 169 2.1E-69 T 06-07-2017 IPR024199 Uncharacterised conserved protein, DsbB-like CDO28_RS13960 b347ee91dde03004d420a059dc1a082f 169 SUPERFAMILY SSF158442 16 163 1.96E-31 T 06-07-2017 CDO28_RS13960 b347ee91dde03004d420a059dc1a082f 169 Gene3D G3DSA:1.20.1550.10 14 163 5.2E-12 T 06-07-2017 IPR023380 Disulphide bond formation protein DsbB-like domain CDO28_RS13960 b347ee91dde03004d420a059dc1a082f 169 Pfam PF02600 Disulfide bond formation protein DsbB 14 163 8.3E-29 T 06-07-2017 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 CDO28_RS16970 0b37d570aca8b8d05353acecd9a2dfe6 314 Gene3D G3DSA:3.40.190.100 110 256 3.3E-26 T 06-07-2017 CDO28_RS16970 0b37d570aca8b8d05353acecd9a2dfe6 314 SUPERFAMILY SSF53850 18 313 1.25E-58 T 06-07-2017 CDO28_RS16970 0b37d570aca8b8d05353acecd9a2dfe6 314 Gene3D G3DSA:3.40.190.10 257 313 1.5E-20 T 06-07-2017 CDO28_RS16970 0b37d570aca8b8d05353acecd9a2dfe6 314 Gene3D G3DSA:3.40.190.10 19 107 1.5E-20 T 06-07-2017 CDO28_RS16970 0b37d570aca8b8d05353acecd9a2dfe6 314 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 25 303 5.0E-52 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS27430 b5f6ad6c9f0aba3f9eb096fbf4457fb2 351 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 61 320 5.1E-34 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS27430 b5f6ad6c9f0aba3f9eb096fbf4457fb2 351 Pfam PF03631 Virulence factor BrkB 70 322 5.2E-65 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS27430 b5f6ad6c9f0aba3f9eb096fbf4457fb2 351 PIRSF PIRSF035875 44 341 1.2E-72 T 06-07-2017 IPR017039 Virulence factor BrkB CDO28_RS31240 69c5049343108b02b38c8ee70d1a89b3 327 Gene3D G3DSA:3.40.50.2300 28 150 2.2E-35 T 06-07-2017 CDO28_RS31240 69c5049343108b02b38c8ee70d1a89b3 327 SUPERFAMILY SSF53822 31 239 4.97E-11 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS31240 69c5049343108b02b38c8ee70d1a89b3 327 Gene3D G3DSA:3.40.50.2300 151 287 5.1E-28 T 06-07-2017 CDO28_RS31240 69c5049343108b02b38c8ee70d1a89b3 327 Pfam PF02608 Basic membrane protein 33 323 3.2E-39 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 SUPERFAMILY SSF53720 14 486 8.38E-156 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 Gene3D G3DSA:3.40.309.10 273 458 3.5E-62 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 15 489 57.763 T 06-07-2017 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 Pfam PF00171 Aldehyde dehydrogenase family 33 483 4.3E-161 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 Gene3D G3DSA:3.40.605.10 19 272 1.0E-90 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS25280 f4a1b7edcfcc112a583e4e913009bba5 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 287 298 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 Gene3D G3DSA:3.40.50.2300 5 124 9.3E-15 T 06-07-2017 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 Pfam PF00072 Response regulator receiver domain 8 111 7.6E-9 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 SMART SM01012 133 188 1.6E-24 T 06-07-2017 IPR005561 ANTAR domain GO:0003723 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 Pfam PF03861 ANTAR domain 136 188 1.0E-20 T 06-07-2017 IPR005561 ANTAR domain GO:0003723 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 SUPERFAMILY SSF52172 4 188 4.41E-50 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 SMART SM00448 6 117 0.0039 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 PIRSF PIRSF036382 1 195 6.9E-70 T 06-07-2017 IPR008327 Signal transduction response regulator, antiterminator CDO28_RS26225 36332d7b657fc050bbc99c51a9452ca2 196 Gene3D G3DSA:1.10.10.10 136 194 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS33625 a967b679311735ff143d0ade0ffdc421 437 Gene3D G3DSA:3.30.1950.10 62 114 9.6E-8 T 06-07-2017 CDO28_RS33625 a967b679311735ff143d0ade0ffdc421 437 Gene3D G3DSA:3.10.560.10 376 407 6.3E-6 T 06-07-2017 CDO28_RS33625 a967b679311735ff143d0ade0ffdc421 437 Gene3D G3DSA:3.10.560.10 115 175 6.3E-6 T 06-07-2017 CDO28_RS33625 a967b679311735ff143d0ade0ffdc421 437 Pfam PF02563 Polysaccharide biosynthesis/export protein 39 117 4.0E-7 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDO28_RS33625 a967b679311735ff143d0ade0ffdc421 437 Pfam PF10531 SLBB domain 123 158 3.4E-6 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 Pfam PF07690 Major Facilitator Superfamily 197 365 6.1E-12 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 Pfam PF07690 Major Facilitator Superfamily 6 173 9.0E-17 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 Gene3D G3DSA:1.20.1250.20 196 364 3.9E-11 T 06-07-2017 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 Gene3D G3DSA:1.20.1250.20 5 177 5.6E-24 T 06-07-2017 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 PRINTS PR01035 Tetracycline resistance protein signature 256 277 1.3E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 PRINTS PR01035 Tetracycline resistance protein signature 125 147 1.3E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 PRINTS PR01035 Tetracycline resistance protein signature 10 26 1.3E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 PRINTS PR01035 Tetracycline resistance protein signature 281 301 1.3E-6 T 06-07-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CDO28_RS02200 2dfd83eba4b2398e0e5dfcee6aa23ef4 370 SUPERFAMILY SSF103473 4 364 6.93E-39 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS31975 a0a3481e76b49f83fc2b8d4d527eedd0 167 SUPERFAMILY SSF69118 22 166 1.27E-18 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS31975 a0a3481e76b49f83fc2b8d4d527eedd0 167 TIGRFAM TIGR04029 CMD_Avi_7170: CMD domain protein, Avi_7170 family 8 164 4.3E-30 T 06-07-2017 IPR023982 Conserved hypothetical protein CHP04029, CMD-like CDO28_RS31975 a0a3481e76b49f83fc2b8d4d527eedd0 167 Gene3D G3DSA:1.20.1290.10 60 164 1.1E-14 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 Gene3D G3DSA:3.40.50.300 152 317 3.7E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 Gene3D G3DSA:3.30.450.90 14 110 3.9E-31 T 06-07-2017 CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 SMART SM00382 162 317 0.0036 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 Pfam PF00437 Type II/IV secretion system protein 16 316 5.3E-84 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 20 326 4.7E-125 T 06-07-2017 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 CDO28_RS24100 cc573e8d4ac6526a4c2acbd7945bbd12 329 SUPERFAMILY SSF52540 7 316 1.04E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17425 3b8293383ebe462676a5a6a1de8e441a 320 Pfam PF00809 Pterin binding enzyme 25 250 7.8E-31 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17425 3b8293383ebe462676a5a6a1de8e441a 320 Gene3D G3DSA:3.20.20.20 21 284 6.9E-95 T 06-07-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS17425 3b8293383ebe462676a5a6a1de8e441a 320 SUPERFAMILY SSF51717 21 284 8.24E-77 T 06-07-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 Gene3D G3DSA:3.40.50.2000 6 124 1.9E-6 T 06-07-2017 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 354 8.3E-83 T 06-07-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 Gene3D G3DSA:3.40.50.2000 156 342 1.1E-49 T 06-07-2017 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 187 351 6.4E-36 T 06-07-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 142 2.3E-34 T 06-07-2017 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 SUPERFAMILY SSF53756 6 361 3.49E-100 T 06-07-2017 CDO28_RS16395 4c532450c3a15fbe796e0d18ed162479 374 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 361 31.453 T 06-07-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDO28_RS19190 4727cd965632fd9becb797af76f36f6d 364 Pfam PF10503 Esterase PHB depolymerase 48 245 1.1E-37 T 06-07-2017 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 CDO28_RS19190 4727cd965632fd9becb797af76f36f6d 364 Gene3D G3DSA:3.40.50.1820 33 302 7.0E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19190 4727cd965632fd9becb797af76f36f6d 364 SUPERFAMILY SSF53474 22 129 4.97E-19 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19190 4727cd965632fd9becb797af76f36f6d 364 SUPERFAMILY SSF53474 132 336 4.13E-40 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19190 4727cd965632fd9becb797af76f36f6d 364 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 45 256 9.1E-63 T 06-07-2017 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 SUPERFAMILY SSF52540 106 374 1.16E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 361 370 - T 06-07-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 Gene3D G3DSA:3.40.50.300 137 405 1.4E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 SMART SM00382 172 354 1.6E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 36 442 3.2E-126 T 06-07-2017 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 36 448 1.1E-186 T 06-07-2017 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS07350 0bb5756b98a2a28813beafcbd4b9c522 467 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 370 8.4E-68 T 06-07-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CDO28_RS31005 361df70bd63d664c8e3810b4f4e2bad5 272 SUPERFAMILY SSF81301 33 160 1.47E-9 T 06-07-2017 CDO28_RS14920 d3b62363af0f0f0c766f693befb39904 161 Pfam PF13673 Acetyltransferase (GNAT) domain 57 135 2.6E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS14920 d3b62363af0f0f0c766f693befb39904 161 Gene3D G3DSA:3.40.630.30 9 154 8.4E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS14920 d3b62363af0f0f0c766f693befb39904 161 SUPERFAMILY SSF55729 10 137 1.66E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 - T 06-07-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 65 364 2.4E-14 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 - T 06-07-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 Hamap MF_03210 Formate dehydrogenase, mitochondrial. 4 385 57.347 T 06-07-2017 IPR033689 NAD-dependent formate dehydrogenase GO:0008863 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 SUPERFAMILY SSF51735 152 338 1.66E-54 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 SUPERFAMILY SSF52283 5 179 7.18E-62 T 06-07-2017 CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 Gene3D G3DSA:3.40.50.720 4 187 2.6E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 Gene3D G3DSA:3.40.50.720 188 345 2.0E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19670 7d5f7734fdbb002cdcdd223d4f1a3a38 401 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 158 337 6.4E-51 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 Gene3D G3DSA:3.40.190.80 170 272 4.5E-20 T 06-07-2017 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 Gene3D G3DSA:3.30.540.10 21 169 1.3E-33 T 06-07-2017 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 Pfam PF00459 Inositol monophosphatase family 22 258 5.7E-43 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 PRINTS PR00377 Inositol monophosphatase superfamily signature 78 94 1.9E-27 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 PRINTS PR00377 Inositol monophosphatase superfamily signature 56 76 1.9E-27 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 PRINTS PR00377 Inositol monophosphatase superfamily signature 226 250 1.9E-27 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 PRINTS PR00377 Inositol monophosphatase superfamily signature 97 113 1.9E-27 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 PRINTS PR00377 Inositol monophosphatase superfamily signature 195 216 1.9E-27 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 97 110 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 SUPERFAMILY SSF56655 22 259 9.16E-55 T 06-07-2017 CDO28_RS31400 f969bbfa6afdfdcdf49f4a798f2b854f 294 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 229 243 - T 06-07-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CDO28_RS20815 6a7d263accf32574399cd0fe9d91fcb4 97 SUPERFAMILY SSF46785 3 44 1.28E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20815 6a7d263accf32574399cd0fe9d91fcb4 97 Gene3D G3DSA:1.10.10.10 1 41 5.5E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20815 6a7d263accf32574399cd0fe9d91fcb4 97 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 37 2.6E-7 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS06950 d09b015d66253c28d418ca5cc197635e 284 Pfam PF00005 ABC transporter 24 181 1.4E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS06950 d09b015d66253c28d418ca5cc197635e 284 Gene3D G3DSA:3.40.50.300 2 255 6.1E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06950 d09b015d66253c28d418ca5cc197635e 284 SUPERFAMILY SSF52540 3 253 2.08E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06950 d09b015d66253c28d418ca5cc197635e 284 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS06950 d09b015d66253c28d418ca5cc197635e 284 SMART SM00382 32 231 9.1E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15335 be21e4c0c4628832c82af6d37f9eb1ed 142 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 140 12.702 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS15335 be21e4c0c4628832c82af6d37f9eb1ed 142 Gene3D G3DSA:3.40.50.1010 4 97 3.1E-4 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS15335 be21e4c0c4628832c82af6d37f9eb1ed 142 SUPERFAMILY SSF88723 3 141 6.45E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS15335 be21e4c0c4628832c82af6d37f9eb1ed 142 Pfam PF01850 PIN domain 3 140 4.3E-20 T 06-07-2017 IPR002716 PIN domain CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 ProDom PD007559 HYDRATASE NITRILE ALPHA SUBUNIT LYASE CHAIN METAL-BINDING DIRECT SEQUENCING NITRILASE 25 206 2.0E-94 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 Gene3D G3DSA:3.90.330.10 3 209 4.0E-94 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 PIRSF PIRSF001426 1 212 1.1E-100 T 06-07-2017 IPR023900 Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 Pfam PF02979 Nitrile hydratase, alpha chain 22 203 3.2E-83 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 TIGRFAM TIGR01323 nitrile_alph: nitrile hydratase, alpha subunit 22 206 5.4E-91 T 06-07-2017 IPR018141 Nitrile hydratase, alpha subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS16760 0b612bff5e5efecb5b29f2300c997c6b 213 SUPERFAMILY SSF56209 9 206 3.66E-84 T 06-07-2017 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 CDO28_RS09035 96f6ea3a50f685eb1d7313188ccea05f 157 PIRSF PIRSF006181 1 157 4.0E-49 T 06-07-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CDO28_RS09035 96f6ea3a50f685eb1d7313188ccea05f 157 Gene3D G3DSA:3.90.960.10 3 156 1.0E-52 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS09035 96f6ea3a50f685eb1d7313188ccea05f 157 SUPERFAMILY SSF55826 5 155 6.93E-42 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS09035 96f6ea3a50f685eb1d7313188ccea05f 157 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 155 5.8E-52 T 06-07-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CDO28_RS09035 96f6ea3a50f685eb1d7313188ccea05f 157 Pfam PF04073 Aminoacyl-tRNA editing domain 35 144 3.5E-25 T 06-07-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDO28_RS00425 24599cd119fffc1f1c97388a13f4d21e 168 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 34 168 9.1E-10 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 202 218 - T 06-07-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 26 260 3.3E-56 T 06-07-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 65 77 2.9E-19 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 45 63 2.9E-19 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 2.9E-19 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 167 180 2.9E-19 T 06-07-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 SUPERFAMILY SSF51419 17 262 6.11E-68 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 Gene3D G3DSA:2.40.37.10 247 376 2.5E-27 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 SUPERFAMILY SSF50621 230 375 1.61E-32 T 06-07-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 Gene3D G3DSA:3.20.20.10 26 246 5.5E-68 T 06-07-2017 IPR029066 PLP-binding barrel CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 268 374 3.2E-14 T 06-07-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 45 63 - T 06-07-2017 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01182 Ornithine decarboxylase signature 117 139 9.5E-23 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01182 Ornithine decarboxylase signature 319 329 9.5E-23 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01182 Ornithine decarboxylase signature 43 70 9.5E-23 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01182 Ornithine decarboxylase signature 17 41 9.5E-23 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS12735 7c38230b21a4d9130f32cfb3eaf97946 377 PRINTS PR01182 Ornithine decarboxylase signature 87 111 9.5E-23 T 06-07-2017 IPR002433 Ornithine decarboxylase GO:0006596 CDO28_RS33455 b5aa2d2e70b0d2f2b71295a212685a33 162 Gene3D G3DSA:3.40.50.150 3 127 3.8E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS33455 b5aa2d2e70b0d2f2b71295a212685a33 162 SUPERFAMILY SSF53335 9 112 3.92E-17 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS33455 b5aa2d2e70b0d2f2b71295a212685a33 162 Pfam PF08123 Histone methylation protein DOT1 3 69 7.9E-9 T 06-07-2017 IPR025789 Histone-lysine N-methyltransferase DOT1 domain GO:0018024 KEGG: 00310+2.1.1.43|Reactome: R-HSA-3214841 CDO28_RS34480 18f7f8975480b42782c550c43fc817dc 262 Pfam PF06182 ABC-2 family transporter protein 32 261 1.7E-19 T 06-07-2017 IPR010390 Protein of unknown function DUF990 CDO28_RS18335 6acd106fc89ae29fd9ff94850f140750 70 Pfam PF01381 Helix-turn-helix 11 65 1.0E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS18335 6acd106fc89ae29fd9ff94850f140750 70 Gene3D G3DSA:1.10.260.40 2 69 2.0E-19 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS18335 6acd106fc89ae29fd9ff94850f140750 70 SUPERFAMILY SSF47413 3 68 1.04E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS18335 6acd106fc89ae29fd9ff94850f140750 70 SMART SM00530 10 65 4.2E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 Pfam PF13202 EF hand 32 52 0.0051 T 06-07-2017 IPR002048 EF-hand domain GO:0005509 CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 Pfam PF13202 EF hand 78 99 4.6E-4 T 06-07-2017 IPR002048 EF-hand domain GO:0005509 CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 Gene3D G3DSA:1.10.238.10 45 102 6.0E-8 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 SUPERFAMILY SSF47473 20 108 2.63E-15 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 Gene3D G3DSA:1.10.238.10 12 44 4.9E-4 T 06-07-2017 IPR011992 EF-hand domain pair CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 ProSitePatterns PS00018 EF-hand calcium-binding domain. 36 48 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site CDO28_RS16840 45f4629b2c57be8515a5cf8797d24afe 117 ProSitePatterns PS00018 EF-hand calcium-binding domain. 85 97 - T 06-07-2017 IPR018247 EF-Hand 1, calcium-binding site CDO28_RS16460 9261a99c13e6e76b5d8175dd395980d4 134 SUPERFAMILY SSF54593 1 127 2.48E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS16460 9261a99c13e6e76b5d8175dd395980d4 134 Gene3D G3DSA:3.10.180.10 1 130 3.4E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS28725 d682a6f70a7a3e20e8c413926b9401cd 355 SUPERFAMILY SSF53822 27 342 8.48E-69 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28725 d682a6f70a7a3e20e8c413926b9401cd 355 Pfam PF13407 Periplasmic binding protein domain 30 307 4.6E-66 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS28725 d682a6f70a7a3e20e8c413926b9401cd 355 Gene3D G3DSA:3.40.50.2300 141 341 1.3E-35 T 06-07-2017 CDO28_RS28725 d682a6f70a7a3e20e8c413926b9401cd 355 Gene3D G3DSA:3.40.50.2300 24 140 8.3E-28 T 06-07-2017 CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 SUPERFAMILY SSF53850 89 294 1.86E-47 T 06-07-2017 CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.6E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 Gene3D G3DSA:3.40.190.10 176 257 1.4E-21 T 06-07-2017 CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 Pfam PF03466 LysR substrate binding domain 88 288 1.1E-45 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 Gene3D G3DSA:1.10.10.10 2 80 2.6E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 Gene3D G3DSA:3.40.190.10 92 175 7.9E-26 T 06-07-2017 CDO28_RS06710 8d33fdc2b1357795ac07cb58caea966d 298 SUPERFAMILY SSF46785 2 111 3.76E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28800 f7390a43c4fc5fa53255d51816463c20 67 Gene3D G3DSA:3.30.1490.70 18 44 3.2E-4 T 06-07-2017 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 3.9E-60 T 06-07-2017 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 SUPERFAMILY SSF52161 4 144 1.16E-57 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 142 28.301 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 Gene3D G3DSA:3.90.1180.10 3 142 1.8E-62 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 PIRSF PIRSF002181 1 154 8.7E-53 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDO28_RS04265 96615c25ec1120bc68dd9a3139fcfc91 154 Pfam PF00572 Ribosomal protein L13 14 138 4.3E-53 T 06-07-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 SUPERFAMILY SSF63829 7 302 5.89E-70 T 06-07-2017 CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 2.6E-6 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 2.6E-6 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 230 247 2.6E-6 T 06-07-2017 IPR005511 Senescence marker protein-30 (SMP-30) CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 287 1.5E-59 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS32795 8d3cf20d1d9fa292591955b18ab94084 303 Gene3D G3DSA:2.120.10.30 21 301 2.3E-76 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 Gene3D G3DSA:1.20.1080.10 152 229 9.4E-8 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 Gene3D G3DSA:1.20.1080.10 4 144 1.4E-26 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 SUPERFAMILY SSF81338 4 224 6.67E-44 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 Pfam PF00230 Major intrinsic protein 150 219 9.8E-5 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 Pfam PF00230 Major intrinsic protein 2 142 9.0E-21 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 PRINTS PR00783 Major intrinsic protein family signature 86 105 3.2E-19 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 PRINTS PR00783 Major intrinsic protein family signature 129 147 3.2E-19 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 PRINTS PR00783 Major intrinsic protein family signature 49 73 3.2E-19 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS05130 ca5a98639e610d0e1db88be87b397817 233 PRINTS PR00783 Major intrinsic protein family signature 8 27 3.2E-19 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 SUPERFAMILY SSF46785 257 331 3.37E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 SUPERFAMILY SSF52540 21 253 2.64E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 346 171.323 T 06-07-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 PRINTS PR00819 CbxX/CfqX superfamily signature 168 187 7.6E-7 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 PRINTS PR00819 CbxX/CfqX superfamily signature 221 233 7.6E-7 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 PRINTS PR00819 CbxX/CfqX superfamily signature 55 70 7.6E-7 T 06-07-2017 IPR000641 CbxX/CfqX GO:0005524 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Gene3D G3DSA:1.10.10.10 258 329 1.1E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 334 1.0E-42 T 06-07-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 SMART SM00382 52 179 2.6E-13 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Gene3D G3DSA:3.40.50.300 21 178 7.4E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Gene3D G3DSA:1.10.8.60 184 256 5.8E-29 T 06-07-2017 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 5.8E-34 T 06-07-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 12 235 7.1E-112 T 06-07-2017 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 CDO28_RS13375 57619d746fe4b60d34e30ef8b53046d8 346 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 327 4.7E-136 T 06-07-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDO28_RS11950 24aeaf61600555081fe564756767fb31 494 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 14 472 8.1E-113 T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS11950 24aeaf61600555081fe564756767fb31 494 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 389 409 - T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS11950 24aeaf61600555081fe564756767fb31 494 Pfam PF00860 Permease family 209 442 1.3E-68 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS11950 24aeaf61600555081fe564756767fb31 494 Pfam PF00860 Permease family 19 170 2.2E-32 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 Pfam PF00005 ABC transporter 26 167 1.9E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 Pfam PF08402 TOBE domain 292 359 1.5E-8 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 SMART SM00382 34 217 5.9E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 Gene3D G3DSA:2.40.50.100 245 298 7.3E-6 T 06-07-2017 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 Gene3D G3DSA:2.40.50.100 353 367 7.3E-6 T 06-07-2017 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 SUPERFAMILY SSF50331 243 367 8.26E-21 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 Gene3D G3DSA:3.40.50.300 3 242 1.8E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS16075 a787c99d881fa5c9a6826bc377167395 374 SUPERFAMILY SSF52540 6 248 3.73E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 Pfam PF00107 Zinc-binding dehydrogenase 193 295 1.2E-8 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 Gene3D G3DSA:3.90.180.10 1 172 1.2E-48 T 06-07-2017 IPR011032 GroES-like CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 130 4.8E-28 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 SUPERFAMILY SSF51735 137 292 4.44E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 SUPERFAMILY SSF50129 1 169 1.37E-44 T 06-07-2017 IPR011032 GroES-like CDO28_RS19970 de1aa1eb2fbb250affb60dee7add9a08 337 Gene3D G3DSA:3.40.50.720 173 281 2.0E-15 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13380 26c6be8579667df42683fa6cefecff6d 300 SUPERFAMILY SSF56300 52 299 1.22E-29 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13380 26c6be8579667df42683fa6cefecff6d 300 Gene3D G3DSA:3.60.21.10 52 252 1.4E-14 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13380 26c6be8579667df42683fa6cefecff6d 300 Pfam PF00149 Calcineurin-like phosphoesterase 52 240 1.1E-8 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS12550 c80874d5a218cdb0e73a664bf1364a37 115 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 109 1.3E-26 T 06-07-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDO28_RS12550 c80874d5a218cdb0e73a664bf1364a37 115 TIGRFAM TIGR00941 2a6301s03: multicomponent Na+:H+ antiporter, MnhC subunit 1 108 9.5E-51 T 06-07-2017 IPR006673 Mnh complex subunit C1 GO:0006812|GO:0008324 CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 SUPERFAMILY SSF51735 160 340 4.24E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 Gene3D G3DSA:3.90.180.10 2 190 1.1E-59 T 06-07-2017 IPR011032 GroES-like CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 SUPERFAMILY SSF50129 1 186 5.93E-67 T 06-07-2017 IPR011032 GroES-like CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 374 2.5E-178 T 06-07-2017 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|Reactome: R-HSA-71384 CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 Pfam PF00107 Zinc-binding dehydrogenase 197 326 1.8E-17 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 112 1.7E-23 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 SUPERFAMILY SSF50129 325 375 9.89E-13 T 06-07-2017 IPR011032 GroES-like CDO28_RS03435 868814e8eefb68908d19170a38b43c7c 375 Gene3D G3DSA:3.40.50.720 191 315 1.8E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 Gene3D G3DSA:3.40.190.10 114 219 4.1E-37 T 06-07-2017 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 38 253 5.1E-60 T 06-07-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 Gene3D G3DSA:3.40.190.10 33 113 4.1E-17 T 06-07-2017 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 Gene3D G3DSA:3.40.190.10 220 259 4.1E-17 T 06-07-2017 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 Pfam PF13531 Bacterial extracellular solute-binding protein 33 257 6.5E-43 T 06-07-2017 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 SUPERFAMILY SSF53850 31 258 6.12E-64 T 06-07-2017 CDO28_RS12470 b30b84e5fde0b29254ce964b7cbdf596 261 PIRSF PIRSF004846 4 261 3.0E-65 T 06-07-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.3E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 4.3E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.3E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 4.3E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.3E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 194 0.0088 T 06-07-2017 CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 SUPERFAMILY SSF51735 9 256 1.3E-61 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 2.2E-46 T 06-07-2017 CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.8E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 3.8E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 3.8E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS24405 2829cc1b91885aae626af97f21bf09d4 259 Gene3D G3DSA:3.40.50.720 6 255 1.5E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03070 40563f3cc5ad28297db31a069b3be376 287 Gene3D G3DSA:3.20.10.10 130 283 3.3E-45 T 06-07-2017 CDO28_RS03070 40563f3cc5ad28297db31a069b3be376 287 Gene3D G3DSA:3.30.470.10 4 118 2.2E-32 T 06-07-2017 CDO28_RS03070 40563f3cc5ad28297db31a069b3be376 287 Pfam PF01063 Amino-transferase class IV 31 257 3.1E-45 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS03070 40563f3cc5ad28297db31a069b3be376 287 SUPERFAMILY SSF56752 2 283 1.29E-72 T 06-07-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CDO28_RS13955 24a0f16955d8683ca3a3fc842d23c192 185 Pfam PF14279 HNH endonuclease 94 143 2.2E-15 T 06-07-2017 IPR029471 HNH endonuclease 5 CDO28_RS13955 24a0f16955d8683ca3a3fc842d23c192 185 SMART SM00507 81 131 3.7E-13 T 06-07-2017 IPR003615 HNH nuclease CDO28_RS05325 359c115621be5592db7bfd9603c0b693 308 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 126 1.7E-21 T 06-07-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CDO28_RS05325 359c115621be5592db7bfd9603c0b693 308 SUPERFAMILY SSF111331 4 299 2.83E-48 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain CDO28_RS05325 359c115621be5592db7bfd9603c0b693 308 Gene3D G3DSA:3.40.50.1970 19 90 1.6E-4 T 06-07-2017 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.385 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 SUPERFAMILY SSF50129 1 94 3.39E-34 T 06-07-2017 IPR011032 GroES-like CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 06-07-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 PRINTS PR00297 10kDa chaperonin signature 60 72 4.2E-32 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 PRINTS PR00297 10kDa chaperonin signature 25 46 4.2E-32 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 PRINTS PR00297 10kDa chaperonin signature 3 18 4.2E-32 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 PRINTS PR00297 10kDa chaperonin signature 81 94 4.2E-32 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 Gene3D G3DSA:2.30.33.40 2 94 8.5E-38 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 SMART SM00883 2 94 2.2E-56 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS21045 101e37d1b264e6958f634535030b5867 105 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 7.6E-35 T 06-07-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDO28_RS22925 4b15a72ed4c69e1e9d931c9002463cdc 151 SUPERFAMILY SSF46689 49 134 2.87E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22925 4b15a72ed4c69e1e9d931c9002463cdc 151 Pfam PF01527 Transposase 50 134 5.4E-10 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS22925 4b15a72ed4c69e1e9d931c9002463cdc 151 Gene3D G3DSA:1.10.10.60 58 146 6.8E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27570 05bb235c36377cc63b62a18527eeba2a 128 Gene3D G3DSA:3.10.450.50 7 115 3.2E-26 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS27570 05bb235c36377cc63b62a18527eeba2a 128 SUPERFAMILY SSF54427 6 122 1.24E-28 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS27570 05bb235c36377cc63b62a18527eeba2a 128 Pfam PF12680 SnoaL-like domain 8 111 6.0E-24 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS33755 aaebf89ca4a68e3c69dddcbc1668a8dc 219 SUPERFAMILY SSF52540 2 210 6.77E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33755 aaebf89ca4a68e3c69dddcbc1668a8dc 219 SMART SM00382 30 198 5.8E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS33755 aaebf89ca4a68e3c69dddcbc1668a8dc 219 Pfam PF00005 ABC transporter 22 151 1.8E-14 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS33755 aaebf89ca4a68e3c69dddcbc1668a8dc 219 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS33755 aaebf89ca4a68e3c69dddcbc1668a8dc 219 Gene3D G3DSA:3.40.50.300 3 214 2.1E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00830 2c54f536367d88030b023702c0fdf3a2 419 PIRSF PIRSF006066 1 419 2.6E-121 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS00830 2c54f536367d88030b023702c0fdf3a2 419 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 418 2.1E-121 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS00830 2c54f536367d88030b023702c0fdf3a2 419 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 3.6E-122 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS16605 0037268677d7fffb17f0525f5b9b9c38 387 Gene3D G3DSA:3.90.350.10 238 305 2.4E-5 T 06-07-2017 IPR014736 Transposase, Tn5-like, core CDO28_RS16605 0037268677d7fffb17f0525f5b9b9c38 387 Pfam PF14294 Domain of unknown function (DUF4372) 6 75 1.6E-24 T 06-07-2017 IPR025399 Domain of unknown function DUF4372 CDO28_RS16605 0037268677d7fffb17f0525f5b9b9c38 387 Pfam PF01609 Transposase DDE domain 117 328 5.4E-32 T 06-07-2017 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDO28_RS16605 0037268677d7fffb17f0525f5b9b9c38 387 SUPERFAMILY SSF53098 109 333 3.34E-34 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS08345 a133755fddb0c1061193be4572a68ad4 237 Pfam PF10099 Anti-sigma-K factor rskA 67 232 2.3E-17 T 06-07-2017 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 CDO28_RS31195 308e8ac8c2d813758c170f65007fce5d 139 Gene3D G3DSA:3.30.1330.40 22 138 1.3E-27 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS31195 308e8ac8c2d813758c170f65007fce5d 139 SUPERFAMILY SSF55298 12 138 1.88E-26 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS31195 308e8ac8c2d813758c170f65007fce5d 139 Pfam PF01042 Endoribonuclease L-PSP 26 138 1.3E-17 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS13810 de85d754f40c609d271e3d1196d20cce 254 SUPERFAMILY SSF53335 90 217 1.58E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS13810 de85d754f40c609d271e3d1196d20cce 254 Gene3D G3DSA:3.40.50.150 90 218 1.7E-20 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS13810 de85d754f40c609d271e3d1196d20cce 254 Pfam PF08241 Methyltransferase domain 90 133 3.5E-10 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS16875 6e4417a0158e8ec4d06bbf7e5ebc16b7 295 SUPERFAMILY SSF51735 4 256 3.82E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16875 6e4417a0158e8ec4d06bbf7e5ebc16b7 295 Gene3D G3DSA:3.40.50.720 3 225 1.1E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16875 6e4417a0158e8ec4d06bbf7e5ebc16b7 295 Pfam PF05368 NmrA-like family 6 225 1.7E-23 T 06-07-2017 IPR008030 NmrA-like domain Reactome: R-HSA-70635 CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 6 347 1.3E-111 T 06-07-2017 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 Gene3D G3DSA:3.50.50.60 86 197 1.5E-9 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 SUPERFAMILY SSF51905 3 273 4.03E-17 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 TIGRFAM TIGR04439 histamin_N_OH: putative histamine N-monooxygenase 7 437 9.6E-233 T 06-07-2017 IPR031043 Putative histamine N-monooxygenase CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 Gene3D G3DSA:3.50.50.60 198 236 4.7E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS20495 48f81ae0cbef69c98b5f4d342b9d8058 456 Gene3D G3DSA:3.50.50.60 285 343 4.7E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS12785 5639601795263455b3bd0b3e8074e7a9 251 Gene3D G3DSA:3.40.50.880 3 249 1.4E-43 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS12785 5639601795263455b3bd0b3e8074e7a9 251 SUPERFAMILY SSF52317 22 245 5.66E-37 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS12785 5639601795263455b3bd0b3e8074e7a9 251 Pfam PF07722 Peptidase C26 4 222 2.2E-72 T 06-07-2017 IPR011697 Peptidase C26 GO:0006541|GO:0016787 CDO28_RS31955 4e4871327017f2e2abc51a48b06adb21 286 Pfam PF05853 beta-keto acid cleavage enzyme 11 258 9.3E-63 T 06-07-2017 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 CDO28_RS31955 4e4871327017f2e2abc51a48b06adb21 286 Gene3D G3DSA:3.20.20.70 11 265 2.4E-73 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS31065 8154759fe484acdfca3bc19c555850a6 313 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 11 288 4.9E-9 T 06-07-2017 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CDO28_RS29240 764ff75f13659675980e6068a18995bd 67 SUPERFAMILY SSF50118 1 64 5.01E-9 T 06-07-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CDO28_RS29240 764ff75f13659675980e6068a18995bd 67 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 2 56 1.4E-4 T 06-07-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 Gene3D G3DSA:2.40.30.10 291 380 6.3E-20 T 06-07-2017 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 Gene3D G3DSA:3.40.50.620 9 225 3.0E-80 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 Gene3D G3DSA:2.30.30.280 234 288 1.8E-16 T 06-07-2017 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 Pfam PF03054 tRNA methyl transferase 14 375 2.0E-109 T 06-07-2017 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 14 375 4.0E-91 T 06-07-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 SUPERFAMILY SSF52402 12 260 3.75E-51 T 06-07-2017 CDO28_RS13555 d5f72656bf6b35a6740a6b25df768f56 398 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 13 376 39.345 T 06-07-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 7 285 41.803 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 SUPERFAMILY SSF54211 140 284 5.31E-45 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 Gene3D G3DSA:3.30.1700.10 135 288 1.8E-52 T 06-07-2017 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 Gene3D G3DSA:3.30.230.20 9 131 1.8E-38 T 06-07-2017 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 SUPERFAMILY SSF54211 8 130 1.9E-35 T 06-07-2017 IPR020568 Ribosomal protein S5 domain 2-type fold CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 9 297 1.5E-88 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS16440 b1984c5926f81968231fcdfd074e6ce5 317 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 9 281 7.5E-97 T 06-07-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 CDO28_RS06405 912eb26dd54deedc11737d3611f8eb24 204 Pfam PF00430 ATP synthase B/B' CF(0) 56 185 2.3E-19 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDO28_RS06405 912eb26dd54deedc11737d3611f8eb24 204 Hamap MF_01398 ATP synthase subunit b [atpF]. 47 202 9.381 T 06-07-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 263 2.6E-48 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 Gene3D G3DSA:3.40.190.10 116 223 7.4E-15 T 06-07-2017 CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 SUPERFAMILY SSF53850 5 264 4.1E-53 T 06-07-2017 CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 Gene3D G3DSA:3.40.190.10 33 115 1.0E-31 T 06-07-2017 CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 Gene3D G3DSA:3.40.190.10 225 263 1.0E-31 T 06-07-2017 CDO28_RS26135 15b0936b8ef407b1705a43622344e9b7 280 SMART SM00062 36 266 8.3E-32 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 Pfam PF00366 Ribosomal protein S17 8 74 1.2E-32 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 74 5.0E-36 T 06-07-2017 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 SUPERFAMILY SSF50249 3 75 2.18E-31 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 8.8E-11 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 8.8E-11 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 8.8E-11 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 78 23.309 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 Gene3D G3DSA:2.40.50.140 1 75 1.0E-34 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03585 505dd709113894ce6aa88384a279d0c9 78 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 1.0E-37 T 06-07-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS25550 1874817a8a3b84b8f4dcb3bb4bef1af6 324 SUPERFAMILY SSF56281 34 319 3.23E-51 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS25550 1874817a8a3b84b8f4dcb3bb4bef1af6 324 Gene3D G3DSA:3.60.15.10 35 317 5.3E-59 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS25550 1874817a8a3b84b8f4dcb3bb4bef1af6 324 Pfam PF00753 Metallo-beta-lactamase superfamily 90 297 7.0E-23 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS25550 1874817a8a3b84b8f4dcb3bb4bef1af6 324 SMART SM00849 92 297 9.1E-18 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS08490 7d7918e6360d3b0fb2f93ebadf1c39ae 139 Gene3D G3DSA:1.10.260.40 15 77 5.3E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS08490 7d7918e6360d3b0fb2f93ebadf1c39ae 139 SMART SM00530 18 73 3.0E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS08490 7d7918e6360d3b0fb2f93ebadf1c39ae 139 Pfam PF01381 Helix-turn-helix 19 72 8.2E-12 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS08490 7d7918e6360d3b0fb2f93ebadf1c39ae 139 SUPERFAMILY SSF47413 5 79 1.77E-29 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS09810 1a85dd15be621ed896884f4a80f12e07 619 SUPERFAMILY SSF53850 61 613 1.36E-122 T 06-07-2017 CDO28_RS09810 1a85dd15be621ed896884f4a80f12e07 619 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 113 527 8.2E-75 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS09810 1a85dd15be621ed896884f4a80f12e07 619 Gene3D G3DSA:3.90.76.10 75 234 5.9E-36 T 06-07-2017 CDO28_RS09810 1a85dd15be621ed896884f4a80f12e07 619 PIRSF PIRSF002741 11 616 4.1E-95 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS09810 1a85dd15be621ed896884f4a80f12e07 619 Gene3D G3DSA:3.10.105.10 329 583 1.3E-49 T 06-07-2017 CDO28_RS19255 fb3e65d1a178610c7c02fc530e48495b 346 SUPERFAMILY SSF51735 14 328 1.53E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19255 fb3e65d1a178610c7c02fc530e48495b 346 Gene3D G3DSA:3.40.50.720 17 326 5.5E-28 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19255 fb3e65d1a178610c7c02fc530e48495b 346 Pfam PF13460 NAD(P)H-binding 22 140 1.2E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS06965 858451b83680bcd36a417c04622f1805 531 Gene3D G3DSA:3.10.105.10 286 498 2.6E-60 T 06-07-2017 CDO28_RS06965 858451b83680bcd36a417c04622f1805 531 SUPERFAMILY SSF53850 25 527 8.15E-147 T 06-07-2017 CDO28_RS06965 858451b83680bcd36a417c04622f1805 531 Gene3D G3DSA:3.90.76.10 34 215 7.1E-47 T 06-07-2017 CDO28_RS06965 858451b83680bcd36a417c04622f1805 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 449 6.2E-95 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS06965 858451b83680bcd36a417c04622f1805 531 PIRSF PIRSF002741 12 531 1.2E-117 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS07765 68d5d8fe039b72d5c9958771c8dc1b0a 241 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 234 2.0E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07765 68d5d8fe039b72d5c9958771c8dc1b0a 241 Gene3D G3DSA:1.10.3720.10 22 234 4.7E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07765 68d5d8fe039b72d5c9958771c8dc1b0a 241 SUPERFAMILY SSF161098 21 234 4.45E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07765 68d5d8fe039b72d5c9958771c8dc1b0a 241 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 128 2.9E-14 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS32500 f1245decaec940036cc7af72bd7216fd 357 Pfam PF13416 Bacterial extracellular solute-binding protein 63 318 3.1E-24 T 06-07-2017 CDO28_RS32500 f1245decaec940036cc7af72bd7216fd 357 Gene3D G3DSA:3.40.190.10 39 144 5.3E-8 T 06-07-2017 CDO28_RS32500 f1245decaec940036cc7af72bd7216fd 357 Gene3D G3DSA:3.40.190.10 277 322 5.3E-8 T 06-07-2017 CDO28_RS32500 f1245decaec940036cc7af72bd7216fd 357 Gene3D G3DSA:3.40.190.10 145 276 1.1E-22 T 06-07-2017 CDO28_RS32500 f1245decaec940036cc7af72bd7216fd 357 SUPERFAMILY SSF53850 40 354 3.03E-42 T 06-07-2017 CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.9E-16 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 Gene3D G3DSA:1.10.10.10 1 85 1.0E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 SUPERFAMILY SSF46785 1 111 2.45E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 Pfam PF03466 LysR substrate binding domain 89 284 9.8E-34 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 Gene3D G3DSA:3.40.190.10 91 190 6.1E-21 T 06-07-2017 CDO28_RS06995 6205e8010c07627d5e2c9d3954e2c22d 293 SUPERFAMILY SSF53850 89 286 1.7E-34 T 06-07-2017 CDO28_RS13800 7ef44df1135ea54de5c1ceb93b6f3405 146 Pfam PF06172 Cupin superfamily (DUF985) 10 136 1.2E-48 T 06-07-2017 IPR009327 Cupin domain of unknown function DUF985 CDO28_RS13800 7ef44df1135ea54de5c1ceb93b6f3405 146 Gene3D G3DSA:2.60.120.10 3 141 2.2E-54 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS13800 7ef44df1135ea54de5c1ceb93b6f3405 146 SUPERFAMILY SSF51182 4 143 2.82E-56 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS26825 cd44ad772c2ada05957e519a64714b3d 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 278 1.3E-8 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26825 cd44ad772c2ada05957e519a64714b3d 285 SUPERFAMILY SSF161098 11 284 1.7E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26825 cd44ad772c2ada05957e519a64714b3d 285 Gene3D G3DSA:1.10.3720.10 11 272 3.0E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26850 0efb10043e714beb9a4c267e9cb60d15 497 Pfam PF07364 Metallopeptidase family M81 9 296 1.5E-78 T 06-07-2017 IPR015995 Microcystin LR degradation protein MlrC, N-terminal CDO28_RS26850 0efb10043e714beb9a4c267e9cb60d15 497 PIRSF PIRSF012702 5 494 2.0E-166 T 06-07-2017 IPR009197 Microcystin LR degradation protein MlrC CDO28_RS26850 0efb10043e714beb9a4c267e9cb60d15 497 Pfam PF07171 MlrC C-terminus 305 478 3.6E-49 T 06-07-2017 IPR010799 Microcystin LR degradation protein MlrC, C-terminal CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 3.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 3.0E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 SUPERFAMILY SSF51735 5 245 1.54E-67 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 3.0E-34 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 Gene3D G3DSA:3.40.50.720 2 245 9.4E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 1.9E-5 T 06-07-2017 CDO28_RS15610 ab0aacc38cbed0792c4e28c0ffa02887 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 245 3.5E-55 T 06-07-2017 CDO28_RS11425 b0986d126179b756c5081c84086c61db 226 SUPERFAMILY SSF88697 18 209 1.29E-46 T 06-07-2017 IPR015947 PUA-like domain CDO28_RS11425 b0986d126179b756c5081c84086c61db 226 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 209 2.4E-22 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 CDO28_RS11425 b0986d126179b756c5081c84086c61db 226 SMART SM00464 17 212 1.6E-7 T 06-07-2017 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 CDO28_RS13330 8edfbc7661e95d5f5a727404bdcc1f9c 193 Gene3D G3DSA:3.40.50.10420 7 190 5.6E-47 T 06-07-2017 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain CDO28_RS13330 8edfbc7661e95d5f5a727404bdcc1f9c 193 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 184 1.4E-30 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDO28_RS13330 8edfbc7661e95d5f5a727404bdcc1f9c 193 PIRSF PIRSF006806 4 186 3.5E-30 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDO28_RS13330 8edfbc7661e95d5f5a727404bdcc1f9c 193 SUPERFAMILY SSF100950 7 190 4.6E-46 T 06-07-2017 CDO28_RS13330 8edfbc7661e95d5f5a727404bdcc1f9c 193 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 7 184 9.5E-43 T 06-07-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDO28_RS15155 ef3f143c3b4f728b59c1ecfdc7e42939 310 Gene3D G3DSA:1.10.3720.10 100 305 4.2E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15155 ef3f143c3b4f728b59c1ecfdc7e42939 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 306 1.2E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15155 ef3f143c3b4f728b59c1ecfdc7e42939 310 SUPERFAMILY SSF161098 102 289 6.93E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15155 ef3f143c3b4f728b59c1ecfdc7e42939 310 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 35 83 1.2E-12 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS06890 9ea0dcc2ad7cd069ce1349f01137ef7c 190 PRINTS PR01837 MgtC/SapB protein signature 80 102 3.3E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDO28_RS06890 9ea0dcc2ad7cd069ce1349f01137ef7c 190 PRINTS PR01837 MgtC/SapB protein signature 26 45 3.3E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDO28_RS06890 9ea0dcc2ad7cd069ce1349f01137ef7c 190 PRINTS PR01837 MgtC/SapB protein signature 45 63 3.3E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDO28_RS06890 9ea0dcc2ad7cd069ce1349f01137ef7c 190 PRINTS PR01837 MgtC/SapB protein signature 107 131 3.3E-38 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDO28_RS06890 9ea0dcc2ad7cd069ce1349f01137ef7c 190 Pfam PF02308 MgtC family 24 152 1.8E-33 T 06-07-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDO28_RS18840 4406d88c4c5616f2968bf65fc8990a34 131 Gene3D G3DSA:3.90.1590.10 5 128 3.6E-34 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS18840 4406d88c4c5616f2968bf65fc8990a34 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 111 1.3E-16 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS18840 4406d88c4c5616f2968bf65fc8990a34 131 SUPERFAMILY SSF51316 4 130 6.07E-40 T 06-07-2017 IPR011057 Mss4-like CDO28_RS26235 71d8a7a99006b4edda3f29e41df5312e 152 SUPERFAMILY SSF47413 2 80 1.23E-27 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS26235 71d8a7a99006b4edda3f29e41df5312e 152 SMART SM00530 16 71 1.0E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS26235 71d8a7a99006b4edda3f29e41df5312e 152 Pfam PF01381 Helix-turn-helix 18 70 3.2E-13 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS26235 71d8a7a99006b4edda3f29e41df5312e 152 Gene3D G3DSA:1.10.260.40 13 76 1.1E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 Gene3D G3DSA:1.10.10.10 9 90 3.0E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 9.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 9.1E-5 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 SUPERFAMILY SSF46785 9 89 7.04E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 SUPERFAMILY SSF53850 98 290 1.07E-28 T 06-07-2017 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 Gene3D G3DSA:3.40.190.10 98 181 4.4E-18 T 06-07-2017 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 68 2.8E-18 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 Gene3D G3DSA:3.40.190.10 182 264 3.0E-11 T 06-07-2017 CDO28_RS19410 f3f29c500e9bb343e94527e4e5e7644c 292 Pfam PF03466 LysR substrate binding domain 98 290 1.4E-26 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS30250 3ba418d6949261ff76634570192459c0 105 Gene3D G3DSA:2.60.40.420 10 103 1.8E-19 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS30250 3ba418d6949261ff76634570192459c0 105 Pfam PF13473 Cupredoxin-like domain 8 103 1.3E-10 T 06-07-2017 IPR028096 EfeO-type cupredoxin-like domain CDO28_RS30250 3ba418d6949261ff76634570192459c0 105 SUPERFAMILY SSF49503 8 103 1.36E-20 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS25330 c361b6e54080a40fab3d995b7028c167 345 Pfam PF01032 FecCD transport family 33 338 1.6E-70 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS25330 c361b6e54080a40fab3d995b7028c167 345 Gene3D G3DSA:1.10.3470.10 18 341 2.7E-80 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25330 c361b6e54080a40fab3d995b7028c167 345 SUPERFAMILY SSF81345 15 338 1.96E-62 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 Pfam PF00175 Oxidoreductase NAD-binding domain 126 243 7.0E-5 T 06-07-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 Pfam PF00970 Oxidoreductase FAD-binding domain 32 112 8.9E-8 T 06-07-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 Gene3D G3DSA:3.40.50.80 112 269 2.8E-38 T 06-07-2017 CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 SUPERFAMILY SSF63380 18 113 6.63E-25 T 06-07-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 Gene3D G3DSA:2.40.30.10 20 111 5.3E-30 T 06-07-2017 CDO28_RS03010 e72dbe87f4270053e9de411eea611f30 270 SUPERFAMILY SSF52343 117 267 3.4E-34 T 06-07-2017 CDO28_RS22665 ccbffd7e44d8a6d1e0ca1d2dd8dcfe32 317 SUPERFAMILY SSF161098 93 296 1.57E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22665 ccbffd7e44d8a6d1e0ca1d2dd8dcfe32 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 314 8.5E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22665 ccbffd7e44d8a6d1e0ca1d2dd8dcfe32 317 Gene3D G3DSA:1.10.3720.10 90 311 1.4E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28625 567e5a8cc26eb5cec5582c708499c691 309 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 6 304 2.4E-160 T 06-07-2017 IPR017625 Putative urate catabolism protein CDO28_RS28625 567e5a8cc26eb5cec5582c708499c691 309 Pfam PF01522 Polysaccharide deacetylase 78 164 2.3E-7 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS28625 567e5a8cc26eb5cec5582c708499c691 309 SUPERFAMILY SSF88713 6 304 1.56E-84 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS28625 567e5a8cc26eb5cec5582c708499c691 309 Gene3D G3DSA:3.20.20.370 5 305 9.5E-99 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS22390 3250334749312d3187f1a0dc3e827a34 338 Gene3D G3DSA:3.20.20.140 26 337 3.6E-83 T 06-07-2017 CDO28_RS22390 3250334749312d3187f1a0dc3e827a34 338 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 24 334 2.2E-90 T 06-07-2017 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 CDO28_RS22390 3250334749312d3187f1a0dc3e827a34 338 SUPERFAMILY SSF51556 290 337 1.79E-64 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS22390 3250334749312d3187f1a0dc3e827a34 338 SUPERFAMILY SSF51556 28 255 1.79E-64 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS19180 765c3644789adfc1b5d27fde88235c1c 412 Pfam PF07690 Major Facilitator Superfamily 39 282 6.6E-22 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS19180 765c3644789adfc1b5d27fde88235c1c 412 SUPERFAMILY SSF103473 25 410 2.22E-46 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS19180 765c3644789adfc1b5d27fde88235c1c 412 Gene3D G3DSA:1.20.1250.20 31 210 6.3E-23 T 06-07-2017 CDO28_RS19180 765c3644789adfc1b5d27fde88235c1c 412 Gene3D G3DSA:1.20.1250.20 239 409 5.7E-8 T 06-07-2017 CDO28_RS31090 a684e4104d57132917e87bd57a513ce5 131 Gene3D G3DSA:2.60.290.11 1 125 1.2E-52 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31090 a684e4104d57132917e87bd57a513ce5 131 SUPERFAMILY SSF89232 2 124 1.7E-42 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31090 a684e4104d57132917e87bd57a513ce5 131 PIRSF PIRSF008711 1 124 1.1E-58 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS31090 a684e4104d57132917e87bd57a513ce5 131 Pfam PF07100 Anabaena sensory rhodopsin transducer 4 122 6.0E-42 T 06-07-2017 IPR009794 Protein of unknown function DUF1362 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 144 245 2.0E-32 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 250 277 2.0E-7 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 119 143 2.0E-7 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 110 8.8E-11 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 127 646 3.9E-95 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 328 411 1.7E-46 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 561 703 1.7E-46 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.90.1170.50 8 109 1.2E-25 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 SUPERFAMILY SSF54665 8 111 1.06E-26 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 SMART SM01008 19 111 3.8E-25 T 06-07-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 Gene3D G3DSA:3.30.365.10 412 507 1.6E-19 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS18995 a32a36074d5cd746dcefe46e4a5f5d0f 704 SUPERFAMILY SSF56003 110 704 1.57E-129 T 06-07-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 CDO28_RS03895 fb6be651bb36c6a9bb6bdef005a4658d 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 6.2E-34 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDO28_RS03895 fb6be651bb36c6a9bb6bdef005a4658d 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 24.459 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDO28_RS03895 fb6be651bb36c6a9bb6bdef005a4658d 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 90 3.5E-22 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDO28_RS03895 fb6be651bb36c6a9bb6bdef005a4658d 95 SUPERFAMILY SSF141000 3 93 2.75E-30 T 06-07-2017 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 Pfam PF01965 DJ-1/PfpI family 76 181 5.9E-10 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 Gene3D G3DSA:1.10.10.60 227 274 4.0E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 Gene3D G3DSA:3.40.50.880 12 226 8.1E-47 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 SMART SM00342 237 320 2.5E-25 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 Gene3D G3DSA:1.10.10.60 275 322 2.4E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 SUPERFAMILY SSF46689 273 323 8.96E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 SUPERFAMILY SSF52317 13 201 1.41E-33 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 SUPERFAMILY SSF46689 220 270 8.33E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 320 9.2E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 289 304 9.2E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS30855 e0d769367c4a72a9d08aed7d13ce23f3 329 Pfam PF12833 Helix-turn-helix domain 243 322 2.2E-22 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS29310 e17737c227ed8d00b192449c59fa85e5 446 Gene3D G3DSA:1.20.1250.20 271 437 2.2E-6 T 06-07-2017 CDO28_RS29310 e17737c227ed8d00b192449c59fa85e5 446 Gene3D G3DSA:1.20.1250.20 49 232 5.4E-13 T 06-07-2017 CDO28_RS29310 e17737c227ed8d00b192449c59fa85e5 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 06-07-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CDO28_RS29310 e17737c227ed8d00b192449c59fa85e5 446 Pfam PF00083 Sugar (and other) transporter 37 231 9.4E-14 T 06-07-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDO28_RS29310 e17737c227ed8d00b192449c59fa85e5 446 SUPERFAMILY SSF103473 31 438 1.96E-37 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS03965 65aca2089f7d5dc62b3e33f23c480307 238 Gene3D G3DSA:3.90.79.10 106 210 2.2E-22 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS03965 65aca2089f7d5dc62b3e33f23c480307 238 Gene3D G3DSA:3.90.79.10 15 74 2.2E-22 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS03965 65aca2089f7d5dc62b3e33f23c480307 238 SUPERFAMILY SSF55811 19 74 1.77E-19 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS03965 65aca2089f7d5dc62b3e33f23c480307 238 SUPERFAMILY SSF55811 106 209 1.77E-19 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS01375 ae8d8a35182d4631471e8bc6b2363539 404 Gene3D G3DSA:3.40.50.620 21 223 3.2E-18 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS01375 ae8d8a35182d4631471e8bc6b2363539 404 SUPERFAMILY SSF52402 31 224 5.95E-18 T 06-07-2017 CDO28_RS01375 ae8d8a35182d4631471e8bc6b2363539 404 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 39 223 3.0E-9 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CDO28_RS00515 23ac80454117c54bd9a069640ee0cbbb 309 SUPERFAMILY SSF52540 119 277 1.44E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00515 23ac80454117c54bd9a069640ee0cbbb 309 SUPERFAMILY SSF52540 35 85 1.44E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00515 23ac80454117c54bd9a069640ee0cbbb 309 Pfam PF07728 AAA domain (dynein-related subfamily) 45 199 4.3E-11 T 06-07-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CDO28_RS00515 23ac80454117c54bd9a069640ee0cbbb 309 Gene3D G3DSA:3.40.50.300 38 228 4.2E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 Pfam PF01380 SIS domain 124 251 4.4E-15 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 SUPERFAMILY SSF53697 93 257 4.45E-30 T 06-07-2017 CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 Gene3D G3DSA:1.10.10.10 1 72 7.1E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 SUPERFAMILY SSF46689 1 72 1.13E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 Gene3D G3DSA:3.40.50.10490 96 258 1.3E-27 T 06-07-2017 CDO28_RS26865 5f8059ccaba75decd52c2b6f20c45c35 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 72 3.1E-17 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 SUPERFAMILY SSF53850 25 363 9.83E-103 T 06-07-2017 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 213 232 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 176 195 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 263 282 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 308 334 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 153 167 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 1.1E-65 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 Pfam PF13416 Bacterial extracellular solute-binding protein 41 328 1.5E-32 T 06-07-2017 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 Gene3D G3DSA:3.40.190.10 145 313 3.3E-70 T 06-07-2017 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 Gene3D G3DSA:3.40.190.10 39 144 3.1E-11 T 06-07-2017 CDO28_RS07055 2d1a4d7457a44418c9f3780b03d34406 364 PIRSF PIRSF019574 1 364 2.6E-147 T 06-07-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 236 3.3E-34 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 Gene3D G3DSA:3.40.190.10 30 122 3.9E-21 T 06-07-2017 CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 Gene3D G3DSA:3.40.190.10 123 220 3.7E-16 T 06-07-2017 CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 SMART SM00062 33 251 1.1E-9 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS02240 efe588cbc9e1c2fceb0075b96bd34cc4 251 SUPERFAMILY SSF53850 1 228 1.22E-39 T 06-07-2017 CDO28_RS01305 df9e820f70d4144117561d9cae1e33e2 133 Pfam PF11042 Protein of unknown function (DUF2750) 9 112 6.1E-23 T 06-07-2017 IPR021284 Protein of unknown function DUF2750 CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 SUPERFAMILY SSF51735 25 283 3.59E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 Gene3D G3DSA:3.40.50.720 23 276 2.6E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 Pfam PF00106 short chain dehydrogenase 28 219 8.5E-23 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 29 46 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 245 265 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 110 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23910 3e3798f577c6600530217f2a0b2fcce0 320 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 221 3.2E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09535 aabd255e7d39593c96a99b0b4cbeb6f1 54 Gene3D G3DSA:1.20.5.780 15 53 1.8E-6 T 06-07-2017 CDO28_RS09535 aabd255e7d39593c96a99b0b4cbeb6f1 54 SUPERFAMILY SSF47598 14 52 4.39E-8 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS09535 aabd255e7d39593c96a99b0b4cbeb6f1 54 Pfam PF05534 HicB family 2 48 7.6E-22 T 06-07-2017 IPR008651 Uncharacterised protein family HicB CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 SUPERFAMILY SSF52540 12 243 1.3E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 Pfam PF00005 ABC transporter 27 175 2.3E-35 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 PIRSF PIRSF039085 8 251 3.0E-106 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 Gene3D G3DSA:3.40.50.300 12 245 8.7E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12305 f5b310cb7ebc0b719fa12183cae42ce6 251 SMART SM00382 36 223 1.4E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21885 7afda5b0e6afd2835ee406f37a469240 314 SUPERFAMILY SSF82282 9 309 2.09E-61 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS21885 7afda5b0e6afd2835ee406f37a469240 314 Pfam PF02574 Homocysteine S-methyltransferase 49 307 2.0E-36 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS21885 7afda5b0e6afd2835ee406f37a469240 314 Gene3D G3DSA:3.20.20.330 13 310 8.5E-45 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 PRINTS PR01549 Autoinducer synthesis protein signature 123 144 1.8E-18 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 1.8E-18 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 1.8E-18 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 1.8E-18 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 PRINTS PR01549 Autoinducer synthesis protein signature 145 166 1.8E-18 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 SUPERFAMILY SSF55729 1 190 1.27E-35 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 Gene3D G3DSA:3.40.630.30 1 205 3.5E-61 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00060 e985b00d90367a5a1a9acdd730e6f276 214 Pfam PF00765 Autoinducer synthase 15 187 5.3E-40 T 06-07-2017 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 CDO28_RS10435 05d760038a08e83ccb115f8b70becd3f 133 SUPERFAMILY SSF53062 1 129 2.22E-37 T 06-07-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CDO28_RS10435 05d760038a08e83ccb115f8b70becd3f 133 Gene3D G3DSA:3.40.50.510 1 130 1.8E-41 T 06-07-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CDO28_RS10435 05d760038a08e83ccb115f8b70becd3f 133 Pfam PF03610 PTS system fructose IIA component 3 111 2.8E-30 T 06-07-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 Pfam PF01047 MarR family 46 104 1.0E-16 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 SUPERFAMILY SSF46785 11 151 1.79E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 2.1E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 2.1E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 2.1E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 Gene3D G3DSA:1.10.10.10 9 151 2.7E-44 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05735 dd48e2dc17fe30f934f4726dc46abac3 158 SMART SM00347 39 137 3.1E-24 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS17520 1d69d9e67c521eb5e107182259501949 135 Gene3D G3DSA:3.30.429.20 69 122 2.7E-5 T 06-07-2017 CDO28_RS17520 1d69d9e67c521eb5e107182259501949 135 Gene3D G3DSA:3.30.429.20 1 59 2.3E-12 T 06-07-2017 CDO28_RS17520 1d69d9e67c521eb5e107182259501949 135 SUPERFAMILY SSF55331 2 125 4.42E-24 T 06-07-2017 IPR014347 Tautomerase/MIF superfamily CDO28_RS17520 1d69d9e67c521eb5e107182259501949 135 Pfam PF01361 Tautomerase enzyme 69 122 3.5E-5 T 06-07-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CDO28_RS17520 1d69d9e67c521eb5e107182259501949 135 Pfam PF01361 Tautomerase enzyme 2 59 2.8E-13 T 06-07-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CDO28_RS17665 cf7acf83c54cb7ccffd291d0e9c02e99 400 Gene3D G3DSA:3.40.47.10 3 268 7.7E-27 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17665 cf7acf83c54cb7ccffd291d0e9c02e99 400 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 255 1.7E-13 T 06-07-2017 IPR014030 Beta-ketoacyl synthase, N-terminal CDO28_RS17665 cf7acf83c54cb7ccffd291d0e9c02e99 400 SUPERFAMILY SSF53901 235 397 3.45E-12 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS17665 cf7acf83c54cb7ccffd291d0e9c02e99 400 SUPERFAMILY SSF53901 6 264 1.89E-29 T 06-07-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 CDO28_RS24035 84968c99b7cc502f3c93257042828e33 72 Gene3D G3DSA:3.30.429.20 1 58 3.3E-10 T 06-07-2017 CDO28_RS24035 84968c99b7cc502f3c93257042828e33 72 SUPERFAMILY SSF55331 2 63 2.52E-10 T 06-07-2017 IPR014347 Tautomerase/MIF superfamily CDO28_RS24035 84968c99b7cc502f3c93257042828e33 72 Pfam PF01361 Tautomerase enzyme 2 60 2.3E-15 T 06-07-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CDO28_RS03430 c25bd5253052d8e2a427900c85413fa5 132 SMART SM00530 24 79 1.0E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS03430 c25bd5253052d8e2a427900c85413fa5 132 SUPERFAMILY SSF47413 20 83 2.63E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS03430 c25bd5253052d8e2a427900c85413fa5 132 Pfam PF01381 Helix-turn-helix 28 79 2.4E-9 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS03430 c25bd5253052d8e2a427900c85413fa5 132 Gene3D G3DSA:1.10.260.40 20 82 1.3E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS18105 18063da24985e2f7070fe5c9594e932a 397 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS18105 18063da24985e2f7070fe5c9594e932a 397 Pfam PF00872 Transposase, Mutator family 1 360 4.7E-151 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS13390 1c248a2f6cdd0f6858ecc83f9016b8c2 291 SUPERFAMILY SSF53448 21 269 1.41E-40 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS13390 1c248a2f6cdd0f6858ecc83f9016b8c2 291 Pfam PF01501 Glycosyl transferase family 8 24 251 1.7E-9 T 06-07-2017 IPR002495 Glycosyl transferase, family 8 GO:0016757 CDO28_RS13390 1c248a2f6cdd0f6858ecc83f9016b8c2 291 Gene3D G3DSA:3.90.550.10 20 267 1.5E-59 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS18125 0cdfcea339eb5543bd1a291075c2de3a 408 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 113 313 1.4E-14 T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS18125 0cdfcea339eb5543bd1a291075c2de3a 408 SUPERFAMILY SSF56059 88 313 6.72E-45 T 06-07-2017 CDO28_RS18125 0cdfcea339eb5543bd1a291075c2de3a 408 Gene3D G3DSA:3.30.470.20 106 396 1.3E-36 T 06-07-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 CDO28_RS18125 0cdfcea339eb5543bd1a291075c2de3a 408 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 277 284 - T 06-07-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 2.9E-16 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 SMART SM00345 14 73 1.1E-15 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 SMART SM00895 101 223 1.1E-19 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 Gene3D G3DSA:1.20.120.530 98 230 1.1E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 SUPERFAMILY SSF48008 97 230 5.75E-26 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.7E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.7E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 Gene3D G3DSA:1.10.10.10 7 79 4.4E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 SUPERFAMILY SSF46785 7 77 2.86E-16 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS32050 a2a8811a2414e786eb6adb932e3e9d60 233 Pfam PF07729 FCD domain 102 222 1.4E-23 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS00415 f545272d93c6b814db041d139fbc3b24 104 PIRSF PIRSF031780 1 104 7.9E-47 T 06-07-2017 IPR009945 Protein of unknown function DUF1476 CDO28_RS00415 f545272d93c6b814db041d139fbc3b24 104 Pfam PF07345 Domain of unknown function (DUF1476) 1 100 6.3E-39 T 06-07-2017 IPR009945 Protein of unknown function DUF1476 CDO28_RS12500 3a888402898042532c3c049d460ecd1a 254 Gene3D G3DSA:3.30.950.10 118 227 7.0E-9 T 06-07-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12500 3a888402898042532c3c049d460ecd1a 254 SUPERFAMILY SSF53790 1 247 1.57E-50 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12500 3a888402898042532c3c049d460ecd1a 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 213 2.7E-37 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12500 3a888402898042532c3c049d460ecd1a 254 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 249 7.7E-86 T 06-07-2017 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 CDO28_RS12500 3a888402898042532c3c049d460ecd1a 254 Gene3D G3DSA:3.40.1010.10 2 117 1.3E-25 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS10520 5ae3a5ab438d7162c43020152d3761c9 424 Pfam PF06850 PHB de-polymerase C-terminus 206 407 1.4E-106 T 06-07-2017 IPR009656 PHB de-polymerase, C-terminal CDO28_RS10520 5ae3a5ab438d7162c43020152d3761c9 424 Gene3D G3DSA:3.40.50.1820 90 404 6.4E-6 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS10520 5ae3a5ab438d7162c43020152d3761c9 424 PIRSF PIRSF020818 1 418 1.0E-204 T 06-07-2017 IPR010915 Polyhydroxyalkanoate depolymerase CDO28_RS10520 5ae3a5ab438d7162c43020152d3761c9 424 SUPERFAMILY SSF53474 71 403 5.57E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS10520 5ae3a5ab438d7162c43020152d3761c9 424 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 407 4.8E-219 T 06-07-2017 IPR010915 Polyhydroxyalkanoate depolymerase CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 PIRSF PIRSF005261 10 329 3.7E-73 T 06-07-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 SUPERFAMILY SSF118352 276 328 6.02E-15 T 06-07-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 SUPERFAMILY SSF64397 16 285 8.89E-66 T 06-07-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 Gene3D G3DSA:3.55.30.10 16 277 5.1E-78 T 06-07-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 Pfam PF01430 Hsp33 protein 17 323 2.2E-77 T 06-07-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CDO28_RS07985 67f93ef676395c64fb1e592c424a960e 330 Gene3D G3DSA:3.90.1280.10 278 327 2.9E-17 T 06-07-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 Gene3D G3DSA:1.10.1740.10 10 77 5.3E-20 T 06-07-2017 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 SUPERFAMILY SSF88946 12 84 4.91E-19 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 Pfam PF04542 Sigma-70 region 2 14 77 3.0E-16 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 SUPERFAMILY SSF88659 101 161 1.2E-16 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 3.0E-28 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 Pfam PF08281 Sigma-70, region 4 109 159 1.1E-16 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS21100 8028c8a95cdb527ed28deb1af02e3508 180 Gene3D G3DSA:1.10.10.10 102 162 5.4E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09750 447fb3eaf609d1d3a962f77ff4240db3 330 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 272 285 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS09750 447fb3eaf609d1d3a962f77ff4240db3 330 Pfam PF00294 pfkB family carbohydrate kinase 54 315 7.9E-48 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS09750 447fb3eaf609d1d3a962f77ff4240db3 330 SUPERFAMILY SSF53613 1 316 3.27E-81 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS09750 447fb3eaf609d1d3a962f77ff4240db3 330 Gene3D G3DSA:3.40.1190.20 2 322 1.3E-71 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS03180 ce9a136467682f89bf78ecd2cf485b2b 296 Gene3D G3DSA:3.10.180.10 5 54 1.4E-4 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS03180 ce9a136467682f89bf78ecd2cf485b2b 296 SUPERFAMILY SSF54593 10 117 3.09E-8 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS03180 ce9a136467682f89bf78ecd2cf485b2b 296 Pfam PF13468 Glyoxalase-like domain 11 201 1.5E-31 T 06-07-2017 IPR025870 Glyoxalase-like domain CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 10 78 9.0E-24 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 SUPERFAMILY SSF82697 2 78 2.44E-28 T 06-07-2017 CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 3 78 7.2E-33 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 79 21.983 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 3 79 1.1E-29 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS00405 60d86aba3c24979fb63fa514bebb1846 80 Gene3D G3DSA:3.30.1280.10 2 79 6.0E-35 T 06-07-2017 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CDO28_RS02055 a9ba04c6537396ef00265bd26e7cc814 447 Pfam PF00589 Phage integrase family 282 412 9.3E-8 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS02055 a9ba04c6537396ef00265bd26e7cc814 447 SUPERFAMILY SSF56349 166 412 1.03E-23 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS02055 a9ba04c6537396ef00265bd26e7cc814 447 Gene3D G3DSA:1.10.443.10 280 412 2.2E-14 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS07825 4e12f25c11c3170a6429802687f94eb8 115 SUPERFAMILY SSF56399 4 112 1.47E-38 T 06-07-2017 CDO28_RS07825 4e12f25c11c3170a6429802687f94eb8 115 Pfam PF06108 Protein of unknown function (DUF952) 9 96 7.5E-31 T 06-07-2017 IPR009297 Protein of unknown function DUF952 CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 SUPERFAMILY SSF52080 4 150 4.19E-44 T 06-07-2017 IPR021131 Ribosomal protein L18e/L15P CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 151 20.224 T 06-07-2017 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 149 1.6E-35 T 06-07-2017 IPR021131 Ribosomal protein L18e/L15P CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 149 8.4E-48 T 06-07-2017 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 Gene3D G3DSA:3.100.10.10 32 151 2.2E-26 T 06-07-2017 CDO28_RS03535 49f861b572dd41cf6b1a3ab261d8c871 156 ProSitePatterns PS00475 Ribosomal protein L15 signature. 115 145 - T 06-07-2017 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS05075 bc341eaf1c29342309e6dbd2311176ad 201 Gene3D G3DSA:2.40.440.10 32 175 7.4E-33 T 06-07-2017 CDO28_RS05075 bc341eaf1c29342309e6dbd2311176ad 201 SUPERFAMILY SSF141523 32 85 4.45E-31 T 06-07-2017 CDO28_RS05075 bc341eaf1c29342309e6dbd2311176ad 201 SUPERFAMILY SSF141523 113 175 4.45E-31 T 06-07-2017 CDO28_RS05075 bc341eaf1c29342309e6dbd2311176ad 201 Pfam PF03734 L,D-transpeptidase catalytic domain 39 174 5.0E-14 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 SUPERFAMILY SSF56601 229 637 2.33E-80 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 SUPERFAMILY SSF53955 61 280 5.06E-59 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 Gene3D G3DSA:3.40.710.10 290 584 2.0E-58 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 624 710 6.3E-20 T 06-07-2017 IPR009647 Penicillin-binding, C-terminal CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 Pfam PF00905 Penicillin binding protein transpeptidase domain 324 540 6.1E-14 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 Gene3D G3DSA:1.10.3810.10 81 261 2.4E-46 T 06-07-2017 CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 54 587 3.7E-188 T 06-07-2017 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 CDO28_RS26750 e0de7845da2fc3daa13fde64f16c5d2d 713 Pfam PF00912 Transglycosylase 80 246 3.3E-45 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS13160 156319bf7e25e437876ec9db8def3003 264 SUPERFAMILY SSF53187 2 243 4.08E-72 T 06-07-2017 CDO28_RS13160 156319bf7e25e437876ec9db8def3003 264 Pfam PF05013 N-formylglutamate amidohydrolase 18 223 6.2E-41 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS13160 156319bf7e25e437876ec9db8def3003 264 PIRSF PIRSF029730 1 255 2.1E-108 T 06-07-2017 IPR011227 Uncharacterised conserved protein UCP029730 CDO28_RS13160 156319bf7e25e437876ec9db8def3003 264 Gene3D G3DSA:3.40.630.40 7 243 4.8E-81 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.7E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.7E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.7E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.7E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.7E-24 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 Pfam PF00106 short chain dehydrogenase 8 192 4.7E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 SUPERFAMILY SSF51735 2 242 8.1E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 Gene3D G3DSA:3.40.50.720 8 219 1.1E-56 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.2E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.2E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.2E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS31645 3a6a602dc32f61b23d3e0e9b3cd438e4 267 PIRSF PIRSF000126 1 267 2.9E-78 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 SMART SM00448 4 116 4.0E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 2.1E-21 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 Gene3D G3DSA:1.10.10.10 128 226 7.3E-25 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 SMART SM00862 150 225 3.3E-19 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 Gene3D G3DSA:3.40.50.2300 5 127 5.6E-33 T 06-07-2017 CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 Pfam PF00072 Response regulator receiver domain 6 117 7.2E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS11330 7a0b92012d8eb3f0a4a02086174a3041 227 SUPERFAMILY SSF52172 3 184 6.69E-36 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS30720 055dbec704b30a2a1b23bb0d36dea586 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 13 144 7.4E-18 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS18260 19589f69b766856474b8f49c8e94acdc 273 Gene3D G3DSA:1.10.3720.10 64 261 3.2E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18260 19589f69b766856474b8f49c8e94acdc 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 263 9.5E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18260 19589f69b766856474b8f49c8e94acdc 273 SUPERFAMILY SSF161098 66 252 1.96E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33545 b900063682c410878613107b6c34f0b4 106 SUPERFAMILY SSF53448 31 94 1.03E-10 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33545 b900063682c410878613107b6c34f0b4 106 Pfam PF00535 Glycosyl transferase family 2 32 94 2.1E-8 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS33545 b900063682c410878613107b6c34f0b4 106 Gene3D G3DSA:3.90.550.10 32 94 1.1E-8 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27040 1693bf9fa908f2354034ccf62b207891 532 Gene3D G3DSA:3.40.190.10 146 295 1.4E-52 T 06-07-2017 CDO28_RS27040 1693bf9fa908f2354034ccf62b207891 532 Gene3D G3DSA:3.10.105.10 296 499 1.9E-58 T 06-07-2017 CDO28_RS27040 1693bf9fa908f2354034ccf62b207891 532 SUPERFAMILY SSF53850 23 522 3.26E-138 T 06-07-2017 CDO28_RS27040 1693bf9fa908f2354034ccf62b207891 532 PIRSF PIRSF002741 19 529 1.3E-108 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS27040 1693bf9fa908f2354034ccf62b207891 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 451 1.3E-90 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS11525 98d239ae92f9b6a419267985ca5b5a52 469 SUPERFAMILY SSF51261 269 456 1.46E-21 T 06-07-2017 IPR011055 Duplicated hybrid motif CDO28_RS11525 98d239ae92f9b6a419267985ca5b5a52 469 Pfam PF01551 Peptidase family M23 352 452 3.2E-20 T 06-07-2017 IPR016047 Peptidase M23 CDO28_RS11525 98d239ae92f9b6a419267985ca5b5a52 469 Gene3D G3DSA:2.70.70.10 309 458 3.1E-26 T 06-07-2017 CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 Gene3D G3DSA:3.40.50.300 6 190 3.1E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 SUPERFAMILY SSF52540 3 191 2.52E-37 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 3 202 1.0E-70 T 06-07-2017 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 SMART SM00382 27 206 2.5E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11185 fa90fd95824c1afc308ec6bacff066e8 207 Pfam PF00005 ABC transporter 19 160 3.5E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32845 faeffd82ef882df98adf832c9931bde1 169 Pfam PF06191 Protein of unknown function (DUF995) 19 154 1.1E-57 T 06-07-2017 IPR009337 Protein of unknown function DUF995 CDO28_RS10935 2122b429e3b4f87977d535dbc5e936d3 385 Pfam PF10129 OpgC protein 23 374 1.4E-108 T 06-07-2017 IPR014550 Uncharacterised conserved protein UCP028704, OpgC CDO28_RS10935 2122b429e3b4f87977d535dbc5e936d3 385 PIRSF PIRSF028704 7 385 1.7E-101 T 06-07-2017 IPR014550 Uncharacterised conserved protein UCP028704, OpgC CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 7 139 1.5E-40 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 06-07-2017 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 SMART SM01003 6 139 2.7E-59 T 06-07-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 SMART SM01002 148 314 1.7E-83 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 SUPERFAMILY SSF52283 5 170 2.21E-47 T 06-07-2017 CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 Gene3D G3DSA:3.40.50.1770 5 189 5.0E-57 T 06-07-2017 CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 371 7.4E-69 T 06-07-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 SUPERFAMILY SSF51735 139 318 2.23E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12800 daa1ab738d647087598cf1352fbfd40b 382 Gene3D G3DSA:3.40.50.1770 190 371 5.8E-36 T 06-07-2017 CDO28_RS01690 d215224c9b55b0bf06617824f6b28679 484 Pfam PF02386 Cation transport protein 42 273 6.5E-33 T 06-07-2017 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CDO28_RS01690 d215224c9b55b0bf06617824f6b28679 484 Pfam PF02386 Cation transport protein 300 476 3.6E-26 T 06-07-2017 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CDO28_RS01690 d215224c9b55b0bf06617824f6b28679 484 PIRSF PIRSF006247 2 484 3.8E-155 T 06-07-2017 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 CDO28_RS19860 e4b33d74eccc17ecfc88b94e09bd41d5 175 SMART SM00226 6 144 2.9E-34 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS19860 e4b33d74eccc17ecfc88b94e09bd41d5 175 SUPERFAMILY SSF52788 6 144 1.44E-36 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS19860 e4b33d74eccc17ecfc88b94e09bd41d5 175 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 117 8.4E-17 T 06-07-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily CDO28_RS19860 e4b33d74eccc17ecfc88b94e09bd41d5 175 Gene3D G3DSA:3.40.50.270 5 141 1.8E-36 T 06-07-2017 CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 Gene3D G3DSA:2.60.40.1610 95 207 6.3E-21 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 Pfam PF06863 Protein of unknown function (DUF1254) 80 209 1.7E-43 T 06-07-2017 IPR010679 Domain of unknown function DUF1254 CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 Gene3D G3DSA:1.10.3360.10 208 305 8.8E-19 T 06-07-2017 IPR023289 VPA0735-like domain CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 SUPERFAMILY SSF160935 42 479 5.49E-126 T 06-07-2017 CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 Pfam PF06742 Protein of unknown function (DUF1214) 350 461 5.8E-34 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS19095 01b12781e01b620aabdaf3bba786d45c 480 Gene3D G3DSA:2.60.120.600 315 480 2.0E-55 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS08770 0f9ce5b364d614aa85385bdf406a80fc 271 Gene3D G3DSA:3.60.20.10 1 252 2.2E-64 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS08770 0f9ce5b364d614aa85385bdf406a80fc 271 SUPERFAMILY SSF56235 2 251 3.17E-37 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS08770 0f9ce5b364d614aa85385bdf406a80fc 271 Pfam PF13230 Glutamine amidotransferases class-II 33 199 1.7E-16 T 06-07-2017 IPR026869 Putative glutamine amidotransferase type 2 CDO28_RS27895 e6d40de3b956d965e0b643cbae1cf699 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 304 3.1E-38 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS13475 83022aac64c9f104913168e4a8297fec 296 Pfam PF00892 EamA-like transporter family 153 286 2.2E-16 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS13475 83022aac64c9f104913168e4a8297fec 296 Pfam PF00892 EamA-like transporter family 6 137 2.0E-19 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS13475 83022aac64c9f104913168e4a8297fec 296 SUPERFAMILY SSF103481 192 291 3.66E-11 T 06-07-2017 CDO28_RS13475 83022aac64c9f104913168e4a8297fec 296 SUPERFAMILY SSF103481 41 141 6.02E-12 T 06-07-2017 CDO28_RS10545 ad886ca8e9df4a429d2cc4e78cdb103d 339 SUPERFAMILY SSF51430 1 323 1.83E-63 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS10545 ad886ca8e9df4a429d2cc4e78cdb103d 339 Gene3D G3DSA:3.20.20.100 1 323 4.5E-51 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS10545 ad886ca8e9df4a429d2cc4e78cdb103d 339 Pfam PF00248 Aldo/keto reductase family 18 322 7.8E-44 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS04855 b726310e833afebe03e621fd6151e736 100 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 96 9.5E-15 T 06-07-2017 IPR008407 Branched-chain amino acid transport, AzlD CDO28_RS11450 a38027f4307caa026f376d57a96c61ab 338 PIRSF PIRSF005096 1 338 2.1E-100 T 06-07-2017 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 CDO28_RS11450 a38027f4307caa026f376d57a96c61ab 338 Gene3D G3DSA:2.70.98.10 4 335 3.7E-113 T 06-07-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 CDO28_RS11450 a38027f4307caa026f376d57a96c61ab 338 SUPERFAMILY SSF74650 6 335 2.3E-102 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CDO28_RS11450 a38027f4307caa026f376d57a96c61ab 338 Pfam PF01263 Aldose 1-epimerase 19 333 3.5E-80 T 06-07-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CDO28_RS02720 6e3d66144d40858a11d45cad35237a70 68 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 65 21.947 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CDO28_RS02720 6e3d66144d40858a11d45cad35237a70 68 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 1.6E-22 T 06-07-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CDO28_RS02720 6e3d66144d40858a11d45cad35237a70 68 Pfam PF02416 mttA/Hcf106 family 5 48 5.5E-13 T 06-07-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CDO28_RS21180 3d763af7b068c392e7446755b3783582 253 Gene3D G3DSA:3.40.50.1820 50 250 3.6E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21180 3d763af7b068c392e7446755b3783582 253 SUPERFAMILY SSF53474 36 250 9.54E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21180 3d763af7b068c392e7446755b3783582 253 Pfam PF12146 Serine aminopeptidase, S33 75 180 6.1E-9 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 SUPERFAMILY SSF51735 5 256 2.44E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 6.6E-55 T 06-07-2017 CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 194 0.0062 T 06-07-2017 CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 Gene3D G3DSA:3.40.50.720 1 255 1.2E-76 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.6E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS15005 8da7ab4fc9894624fc22d0ce96055c78 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.4E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS30370 a0387ccd733d609dd493932ae222e890 616 Pfam PF01964 Radical SAM ThiC family 129 573 1.9E-200 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDO28_RS30370 a0387ccd733d609dd493932ae222e890 616 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 128 576 1.7E-213 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDO28_RS30370 a0387ccd733d609dd493932ae222e890 616 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 128 579 56.268 T 06-07-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDO28_RS30370 a0387ccd733d609dd493932ae222e890 616 Pfam PF13667 ThiC-associated domain 17 89 4.4E-26 T 06-07-2017 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDO28_RS26510 bc4b15dc47cb80619a402c66001ddd02 228 Pfam PF02585 GlcNAc-PI de-N-acetylase 12 127 8.2E-22 T 06-07-2017 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 CDO28_RS26510 bc4b15dc47cb80619a402c66001ddd02 228 Gene3D G3DSA:3.40.50.10320 10 227 1.5E-51 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CDO28_RS26510 bc4b15dc47cb80619a402c66001ddd02 228 SUPERFAMILY SSF102588 10 227 1.57E-47 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CDO28_RS30705 81b582ca5b722a504e1c26503acc0d14 1205 Pfam PF01968 Hydantoinase/oxoprolinase 207 495 5.3E-116 T 06-07-2017 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 CDO28_RS30705 81b582ca5b722a504e1c26503acc0d14 1205 Pfam PF02538 Hydantoinase B/oxoprolinase 698 1203 2.4E-198 T 06-07-2017 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 CDO28_RS30705 81b582ca5b722a504e1c26503acc0d14 1205 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 9 188 1.1E-61 T 06-07-2017 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 CDO28_RS10915 6b514f952fda2e10184474ebe7d562b2 466 Pfam PF07063 Domain of unknown function (DUF1338) 12 412 5.5E-121 T 06-07-2017 IPR009770 Domain of unknown function DUF1338 CDO28_RS10915 6b514f952fda2e10184474ebe7d562b2 466 SMART SM01150 13 412 1.2E-232 T 06-07-2017 IPR009770 Domain of unknown function DUF1338 CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 SUPERFAMILY SSF48024 21 132 6.67E-30 T 06-07-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 490 9.4E-153 T 06-07-2017 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 Gene3D G3DSA:3.40.50.300 189 490 3.1E-96 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 SMART SM00382 218 437 5.0E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 Gene3D G3DSA:1.10.860.10 24 124 6.9E-25 T 06-07-2017 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 Pfam PF00772 DnaB-like helicase N terminal domain 23 124 4.7E-26 T 06-07-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 Pfam PF03796 DnaB-like helicase C terminal domain 201 488 6.7E-101 T 06-07-2017 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 SUPERFAMILY SSF52540 455 481 4.64E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04850 f734d6aaa7b5a6e74c42d3276e4f16f1 499 SUPERFAMILY SSF52540 200 428 4.64E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05970 e7bf44d9bab1bcedad97979b4f834f1a 203 Gene3D G3DSA:3.40.630.30 13 191 3.3E-50 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS05970 e7bf44d9bab1bcedad97979b4f834f1a 203 Pfam PF13302 Acetyltransferase (GNAT) domain 24 167 6.6E-20 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS05970 e7bf44d9bab1bcedad97979b4f834f1a 203 SUPERFAMILY SSF55729 15 191 4.72E-44 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS21635 4016d84947e4da48cba5c5faa43a225a 121 Gene3D G3DSA:3.40.50.300 26 103 7.0E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21635 4016d84947e4da48cba5c5faa43a225a 121 SUPERFAMILY SSF52540 35 110 5.82E-7 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21635 4016d84947e4da48cba5c5faa43a225a 121 Pfam PF05621 Bacterial TniB protein 14 120 3.6E-31 T 06-07-2017 IPR008868 Bacterial TniB CDO28_RS22115 4f9b819e788de0dff286f4b96c4c84fd 492 SUPERFAMILY SSF53649 5 437 5.23E-47 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS22115 4f9b819e788de0dff286f4b96c4c84fd 492 Gene3D G3DSA:3.40.720.10 4 276 9.6E-40 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS22115 4f9b819e788de0dff286f4b96c4c84fd 492 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 8 285 1.7E-36 T 06-07-2017 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 CDO28_RS25105 21f20322656fdb30feb810cd36400093 352 Pfam PF01594 Domain of unknown function DUF20 13 325 6.4E-30 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS20760 ef562fd50ed994bb3e4e28b1f3a4ace0 355 Pfam PF01841 Transglutaminase-like superfamily 152 269 7.2E-23 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS20760 ef562fd50ed994bb3e4e28b1f3a4ace0 355 Gene3D G3DSA:3.90.260.10 204 271 5.0E-7 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS20760 ef562fd50ed994bb3e4e28b1f3a4ace0 355 SUPERFAMILY SSF54001 150 291 5.05E-25 T 06-07-2017 CDO28_RS20760 ef562fd50ed994bb3e4e28b1f3a4ace0 355 SMART SM00460 196 271 2.6E-16 T 06-07-2017 IPR002931 Transglutaminase-like CDO28_RS07780 52fffed8360efe003dc02daeb1eeeac3 470 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 436 6.0E-161 T 06-07-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 CDO28_RS07780 52fffed8360efe003dc02daeb1eeeac3 470 PIRSF PIRSF006446 2 456 1.6E-197 T 06-07-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 SUPERFAMILY SSF52518 371 575 1.42E-53 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Pfam PF02780 Transketolase, C-terminal domain 565 682 1.0E-33 T 06-07-2017 IPR033248 Transketolase, C-terminal domain CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Gene3D G3DSA:3.40.50.970 387 565 8.5E-60 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 SMART SM00861 374 548 2.3E-43 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 SUPERFAMILY SSF52518 21 344 6.45E-54 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Gene3D G3DSA:3.40.50.920 566 690 3.9E-39 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 SUPERFAMILY SSF52922 561 691 5.5E-38 T 06-07-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Pfam PF02779 Transketolase, pyrimidine binding domain 374 548 2.7E-33 T 06-07-2017 IPR005475 Transketolase-like, pyrimidine-binding domain CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Gene3D G3DSA:3.40.50.970 21 386 1.3E-60 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS30680 fec7aab10a3eb586569091128ab27f76 692 Pfam PF00676 Dehydrogenase E1 component 39 334 6.2E-29 T 06-07-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 CDO28_RS11940 a37350b0a46b46818abf5aa59c5ac068 142 Pfam PF01475 Ferric uptake regulator family 18 136 2.2E-39 T 06-07-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CDO28_RS11940 a37350b0a46b46818abf5aa59c5ac068 142 Gene3D G3DSA:1.10.10.10 8 88 9.3E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11940 a37350b0a46b46818abf5aa59c5ac068 142 SUPERFAMILY SSF46785 9 138 3.37E-38 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 136 159 4.3E-36 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 Gene3D G3DSA:3.30.540.10 14 163 1.9E-45 T 06-07-2017 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR01959 SuhB family inositol monophosphatase signature 26 48 5.4E-9 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR01959 SuhB family inositol monophosphatase signature 202 214 5.4E-9 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 PRINTS PR01959 SuhB family inositol monophosphatase signature 110 129 5.4E-9 T 06-07-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 SUPERFAMILY SSF56655 10 247 1.96E-71 T 06-07-2017 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 Pfam PF00459 Inositol monophosphatase family 18 234 2.6E-56 T 06-07-2017 IPR000760 Inositol monophosphatase GO:0046854 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 Gene3D G3DSA:3.40.190.80 164 250 5.2E-22 T 06-07-2017 CDO28_RS31355 8ec03b27430a7804460d99d228e01642 279 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 06-07-2017 IPR020583 Inositol monophosphatase, metal-binding site CDO28_RS23590 1f8787febe2ce1980c74ba60eda26861 287 Gene3D G3DSA:3.90.850.10 62 286 1.4E-90 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS23590 1f8787febe2ce1980c74ba60eda26861 287 SUPERFAMILY SSF56529 58 285 1.31E-80 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS23590 1f8787febe2ce1980c74ba60eda26861 287 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 285 3.4E-74 T 06-07-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CDO28_RS23590 1f8787febe2ce1980c74ba60eda26861 287 Pfam PF10370 Domain of unknown function (DUF2437) 1 65 3.3E-6 T 06-07-2017 IPR018833 Domain of unknown function DUF2437 CDO28_RS25820 00805f6c15a5b4cc539f92ca118b6996 210 Pfam PF01810 LysE type translocator 16 208 2.7E-29 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS25820 00805f6c15a5b4cc539f92ca118b6996 210 PIRSF PIRSF006324 1 210 6.3E-54 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS26420 4290ecaafd2ce99923e1d7aa942adf84 311 Gene3D G3DSA:3.40.50.720 1 293 5.8E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26420 4290ecaafd2ce99923e1d7aa942adf84 311 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 230 4.3E-40 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS26420 4290ecaafd2ce99923e1d7aa942adf84 311 SUPERFAMILY SSF51735 1 294 3.93E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27510 318d4e43418fbbba205d7adcaca50357 152 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 53 130 8.7E-18 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS27510 318d4e43418fbbba205d7adcaca50357 152 SUPERFAMILY SSF51316 16 147 8.89E-36 T 06-07-2017 IPR011057 Mss4-like CDO28_RS27510 318d4e43418fbbba205d7adcaca50357 152 Gene3D G3DSA:3.90.1590.10 18 141 9.2E-33 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.6E-20 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 Pfam PF03466 LysR substrate binding domain 89 287 1.5E-40 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 Gene3D G3DSA:1.10.10.10 4 85 2.6E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 SUPERFAMILY SSF46785 3 112 1.79E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 Gene3D G3DSA:3.40.190.10 177 257 2.5E-16 T 06-07-2017 CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 SUPERFAMILY SSF53850 88 288 1.23E-43 T 06-07-2017 CDO28_RS24975 bebfec5eac439b004737358c3061cf96 291 Gene3D G3DSA:3.40.190.10 92 176 1.1E-22 T 06-07-2017 CDO28_RS08200 c9935b93f837b8d2626bf69184fdf665 143 Pfam PF08837 Protein of unknown function (DUF1810) 6 140 2.1E-55 T 06-07-2017 IPR014937 Protein of unknown function DUF1810 CDO28_RS08200 c9935b93f837b8d2626bf69184fdf665 143 SUPERFAMILY SSF140736 5 141 6.67E-58 T 06-07-2017 CDO28_RS08200 c9935b93f837b8d2626bf69184fdf665 143 PIRSF PIRSF008546 1 143 2.8E-70 T 06-07-2017 IPR014937 Protein of unknown function DUF1810 CDO28_RS07710 49e7a9ddaec7bb6c8e699f545b8baa83 441 Pfam PF05159 Capsule polysaccharide biosynthesis protein 83 390 1.6E-123 T 06-07-2017 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 CDO28_RS26505 ea06dac0433a3c18dd4c844a8a70c50e 230 Pfam PF02397 Bacterial sugar transferase 24 198 8.9E-46 T 06-07-2017 IPR003362 Bacterial sugar transferase CDO28_RS26010 65753839f1f6fcfd38d9737a31915d92 210 Pfam PF13403 Hint domain 1 137 1.7E-45 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS26010 65753839f1f6fcfd38d9737a31915d92 210 Gene3D G3DSA:2.170.16.10 2 136 3.6E-10 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS26010 65753839f1f6fcfd38d9737a31915d92 210 SUPERFAMILY SSF51294 2 137 1.96E-13 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS30570 eb9b8f70c5f7ff3867f54fa294fdf55a 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 294 1.4E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30570 eb9b8f70c5f7ff3867f54fa294fdf55a 298 SUPERFAMILY SSF161098 56 286 8.11E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30570 eb9b8f70c5f7ff3867f54fa294fdf55a 298 Gene3D G3DSA:1.10.3720.10 62 295 8.8E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07850 14df37743f39de568df76baaed569554 312 Gene3D G3DSA:3.40.50.150 104 288 8.7E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS07850 14df37743f39de568df76baaed569554 312 SUPERFAMILY SSF48452 17 81 1.88E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS07850 14df37743f39de568df76baaed569554 312 Pfam PF08241 Methyltransferase domain 150 248 1.4E-9 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS07850 14df37743f39de568df76baaed569554 312 SUPERFAMILY SSF53335 108 311 6.37E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS07850 14df37743f39de568df76baaed569554 312 Gene3D G3DSA:1.25.40.10 20 80 1.9E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS11955 74c82283be6dd113438b84e722b7f0c3 490 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 24 432 1.9E-103 T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS11955 74c82283be6dd113438b84e722b7f0c3 490 TIGRFAM TIGR03173 pbuX: xanthine permease 27 434 1.3E-151 T 06-07-2017 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 CDO28_RS11955 74c82283be6dd113438b84e722b7f0c3 490 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 349 369 - T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS11955 74c82283be6dd113438b84e722b7f0c3 490 Pfam PF00860 Permease family 25 401 2.7E-90 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS32950 71cee040d4abe1ac2903d5cfd84ee3af 286 SUPERFAMILY SSF52833 151 245 1.7E-5 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32950 71cee040d4abe1ac2903d5cfd84ee3af 286 Gene3D G3DSA:3.40.30.10 151 242 8.4E-4 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS32950 71cee040d4abe1ac2903d5cfd84ee3af 286 Pfam PF05988 Bacterial protein of unknown function (DUF899) 47 280 1.7E-47 T 06-07-2017 IPR010296 Protein of unknown function DUF899, thioredoxin-like CDO28_RS08025 745e01f2e6bce832fd2a35d6bfc16bbb 494 SUPERFAMILY SSF161098 249 481 1.44E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08025 745e01f2e6bce832fd2a35d6bfc16bbb 494 Gene3D G3DSA:1.10.3720.10 253 490 9.2E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08025 745e01f2e6bce832fd2a35d6bfc16bbb 494 Pfam PF12501 Phosphate ATP-binding cassette transporter 7 170 4.4E-56 T 06-07-2017 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 CDO28_RS08025 745e01f2e6bce832fd2a35d6bfc16bbb 494 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 276 490 8.4E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08025 745e01f2e6bce832fd2a35d6bfc16bbb 494 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 190 489 2.5E-86 T 06-07-2017 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CDO28_RS11810 7219da82347a1dd13011746f58ca083e 214 PIRSF PIRSF006324 2 213 1.9E-47 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS11810 7219da82347a1dd13011746f58ca083e 214 Pfam PF01810 LysE type translocator 17 211 1.3E-36 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS20585 ae31a35eb525379e621070aa48fb908a 328 Gene3D G3DSA:3.40.50.2300 137 292 1.4E-35 T 06-07-2017 CDO28_RS20585 ae31a35eb525379e621070aa48fb908a 328 Pfam PF02608 Basic membrane protein 46 272 1.4E-30 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS06490 6dae2502285fa4b22f9a2e02b8084442 212 Pfam PF05239 PRC-barrel domain 85 161 8.1E-17 T 06-07-2017 IPR027275 PRC-barrel domain CDO28_RS06490 6dae2502285fa4b22f9a2e02b8084442 212 SUPERFAMILY SSF50346 88 147 8.04E-14 T 06-07-2017 IPR011033 PRC-barrel-like CDO28_RS06490 6dae2502285fa4b22f9a2e02b8084442 212 Gene3D G3DSA:2.30.30.240 89 145 9.3E-13 T 06-07-2017 CDO28_RS28775 ff5e8087a707ddb2425d901dc399de64 261 SUPERFAMILY SSF52540 7 236 3.12E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28775 ff5e8087a707ddb2425d901dc399de64 261 Pfam PF00005 ABC transporter 25 175 1.9E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28775 ff5e8087a707ddb2425d901dc399de64 261 Gene3D G3DSA:3.40.50.300 5 237 8.3E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28775 ff5e8087a707ddb2425d901dc399de64 261 SMART SM00382 33 223 8.8E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27685 99689f82350eb7e3f64e50f7771ef547 413 Pfam PF04143 Sulphur transport 69 397 2.6E-81 T 06-07-2017 IPR007272 Sulphur transport domain CDO28_RS17510 50fa43d8dde66ec1b200646283c80125 337 Pfam PF02574 Homocysteine S-methyltransferase 18 294 2.0E-56 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS17510 50fa43d8dde66ec1b200646283c80125 337 Gene3D G3DSA:3.20.20.330 6 312 1.7E-80 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS17510 50fa43d8dde66ec1b200646283c80125 337 SUPERFAMILY SSF82282 8 320 8.63E-88 T 06-07-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDO28_RS17510 50fa43d8dde66ec1b200646283c80125 337 PIRSF PIRSF037505 12 335 1.5E-10 T 06-07-2017 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 CDO28_RS33610 78acda42661e1362a4016bddc305fcbb 355 SUPERFAMILY SSF51735 1 336 8.06E-97 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33610 78acda42661e1362a4016bddc305fcbb 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 4.3E-93 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33610 78acda42661e1362a4016bddc305fcbb 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 338 6.9E-149 T 06-07-2017 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 CDO28_RS33610 78acda42661e1362a4016bddc305fcbb 355 Gene3D G3DSA:3.40.50.720 1 190 1.1E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33610 78acda42661e1362a4016bddc305fcbb 355 Gene3D G3DSA:3.90.25.10 191 337 3.5E-52 T 06-07-2017 CDO28_RS24850 3c5a5549c56eba35ed5236f92bc4c631 497 Gene3D G3DSA:3.30.450.90 137 234 6.2E-36 T 06-07-2017 CDO28_RS24850 3c5a5549c56eba35ed5236f92bc4c631 497 SUPERFAMILY SSF52540 121 427 5.73E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24850 3c5a5549c56eba35ed5236f92bc4c631 497 Pfam PF00437 Type II/IV secretion system protein 141 416 1.5E-79 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CDO28_RS24850 3c5a5549c56eba35ed5236f92bc4c631 497 Gene3D G3DSA:3.40.50.300 238 456 1.3E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 SUPERFAMILY SSF46785 254 325 4.35E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 PIRSF PIRSF019423 2 334 1.8E-156 T 06-07-2017 IPR011213 Nicotinic acid mononucleotide biosynthesis protein CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 SUPERFAMILY SSF55811 25 147 2.84E-8 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 Gene3D G3DSA:1.10.10.10 259 326 2.4E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 Gene3D G3DSA:3.90.79.10 225 258 7.1E-9 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS05005 dfa6cbb39b06333c58a771d3043c3797 334 Gene3D G3DSA:3.90.79.10 29 138 7.1E-9 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS19335 47ed09b37a195fea7239a95e57ccdeac 208 SUPERFAMILY SSF53335 8 194 6.19E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS19335 47ed09b37a195fea7239a95e57ccdeac 208 Gene3D G3DSA:3.40.50.150 11 193 3.7E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS19335 47ed09b37a195fea7239a95e57ccdeac 208 Pfam PF13649 Methyltransferase domain 46 139 8.5E-10 T 06-07-2017 CDO28_RS32360 137be3ddf3a1b5eca0aa2464c0b3785b 252 Pfam PF11845 Protein of unknown function (DUF3365) 99 249 4.7E-22 T 06-07-2017 IPR021796 Protein of unknown function DUF3365 CDO28_RS15405 2133a4996d2e0070960ec1205c5c2c55 210 Pfam PF00293 NUDIX domain 51 160 5.7E-14 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS15405 2133a4996d2e0070960ec1205c5c2c55 210 SUPERFAMILY SSF55811 49 201 5.28E-36 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS15405 2133a4996d2e0070960ec1205c5c2c55 210 Gene3D G3DSA:3.90.79.10 35 209 2.1E-43 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS10315 4a73aea00c2b3be73517f4b9e0e1ffe5 174 PIRSF PIRSF031796 1 165 3.8E-91 T 06-07-2017 IPR009394 DNA repair protein MmcB-like CDO28_RS10315 4a73aea00c2b3be73517f4b9e0e1ffe5 174 Pfam PF06319 Protein of unknown function (DUF1052) 9 154 8.4E-77 T 06-07-2017 IPR009394 DNA repair protein MmcB-like CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 Pfam PF00106 short chain dehydrogenase 6 191 6.0E-44 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 Gene3D G3DSA:3.40.50.720 3 196 3.0E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 3.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.2E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 3.9E-19 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 3.9E-19 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 3.9E-19 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.9E-19 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 3.9E-19 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27540 b5ded018860d984703e304d6094d4926 247 SUPERFAMILY SSF51735 3 193 2.68E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22410 15ce84569753cb8aa90126f5553b97e3 317 SUPERFAMILY SSF161098 86 297 1.96E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22410 15ce84569753cb8aa90126f5553b97e3 317 Gene3D G3DSA:1.10.3720.10 82 309 2.2E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22410 15ce84569753cb8aa90126f5553b97e3 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 311 5.1E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 45 272 2.0E-62 T 06-07-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 SUPERFAMILY SSF52402 22 225 2.87E-70 T 06-07-2017 CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 24 317 1.5E-163 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 PIRSF PIRSF002936 15 317 5.6E-147 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 Gene3D G3DSA:3.40.50.620 259 268 6.7E-59 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 Gene3D G3DSA:3.40.50.620 10 225 6.7E-59 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS05835 02d6c7d1ea640a8e71d23c47e6b57c0a 317 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 19 317 58.127 T 06-07-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 122 396 7.7E-120 T 06-07-2017 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 Gene3D G3DSA:1.10.645.10 6 233 1.0E-44 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 Gene3D G3DSA:1.10.645.10 234 388 4.3E-21 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 45 56 - T 06-07-2017 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 396 48.093 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 8 396 1.2E-172 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04120 e7f2596000e5f86cd2af469207ad706e 396 SUPERFAMILY SSF56762 18 396 1.27E-135 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS17790 140e3a1c85e34c094285f2959dabab46 541 Pfam PF04616 Glycosyl hydrolases family 43 5 303 6.0E-110 T 06-07-2017 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 CDO28_RS17790 140e3a1c85e34c094285f2959dabab46 541 SUPERFAMILY SSF49899 332 537 5.54E-58 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS17790 140e3a1c85e34c094285f2959dabab46 541 Gene3D G3DSA:2.60.120.200 332 538 6.0E-61 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS17790 140e3a1c85e34c094285f2959dabab46 541 Gene3D G3DSA:2.115.10.20 4 310 1.1E-97 T 06-07-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain CDO28_RS17790 140e3a1c85e34c094285f2959dabab46 541 SUPERFAMILY SSF75005 5 319 7.14E-98 T 06-07-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain CDO28_RS23280 2946dc1100bb14afe1b53fab5cb87e6b 343 Pfam PF13362 Toprim domain 233 321 1.2E-18 T 06-07-2017 IPR006171 Toprim domain CDO28_RS23280 2946dc1100bb14afe1b53fab5cb87e6b 343 Gene3D G3DSA:3.40.1360.10 247 325 1.5E-5 T 06-07-2017 CDO28_RS00315 e3ea9eeb924991fdfa5de3ec16ad4613 276 Pfam PF00588 SpoU rRNA Methylase family 17 166 9.1E-31 T 06-07-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDO28_RS00315 e3ea9eeb924991fdfa5de3ec16ad4613 276 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 17 249 3.4E-52 T 06-07-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CDO28_RS00315 e3ea9eeb924991fdfa5de3ec16ad4613 276 SUPERFAMILY SSF75217 15 173 3.77E-31 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS00315 e3ea9eeb924991fdfa5de3ec16ad4613 276 Gene3D G3DSA:3.40.1280.10 16 171 2.9E-30 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS00315 e3ea9eeb924991fdfa5de3ec16ad4613 276 PIRSF PIRSF004808 9 257 1.1E-85 T 06-07-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CDO28_RS20075 9ae5c1dcdef3fd69b14aa15a92ec705b 167 Pfam PF14367 Domain of unknown function (DUF4411) 2 158 2.3E-34 T 06-07-2017 IPR016541 Uncharacterised conserved protein UCP008505 CDO28_RS04285 8dbce61049c1f69fae2119db713155b8 367 Pfam PF02628 Cytochrome oxidase assembly protein 28 346 5.7E-115 T 06-07-2017 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 CDO28_RS04285 8dbce61049c1f69fae2119db713155b8 367 Hamap MF_01665 Heme A synthase [ctaA]. 23 356 25.784 T 06-07-2017 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 Reactome: R-HSA-189451 CDO28_RS09990 08e6ee58b82976cf02011f911144e250 274 SUPERFAMILY SSF51658 7 264 2.75E-59 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS09990 08e6ee58b82976cf02011f911144e250 274 Gene3D G3DSA:3.20.20.150 6 273 3.9E-53 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS09990 08e6ee58b82976cf02011f911144e250 274 Pfam PF01261 Xylose isomerase-like TIM barrel 25 226 1.2E-30 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 88 107 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 110 127 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 193 211 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 43 58 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 167 185 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 28 43 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 63 78 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 259 271 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 PRINTS PR01010 Flagellar P-ring protein signature 127 145 3.0E-91 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 Hamap MF_00416 Flagellar P-ring protein [flgI]. 8 371 37.053 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS07315 3ed6257ebe283866c4d30c61e366b097 371 Pfam PF02119 Flagellar P-ring protein 28 369 1.1E-131 T 06-07-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CDO28_RS29170 0f3e8cc2137f8e722516fb4164460dc3 311 SUPERFAMILY SSF53613 12 296 1.71E-55 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS29170 0f3e8cc2137f8e722516fb4164460dc3 311 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS29170 0f3e8cc2137f8e722516fb4164460dc3 311 Gene3D G3DSA:3.40.1190.20 13 298 1.6E-59 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS29170 0f3e8cc2137f8e722516fb4164460dc3 311 Pfam PF00294 pfkB family carbohydrate kinase 49 294 5.6E-35 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS33250 f8fb7a4ee65421b686697be0725fa800 243 SUPERFAMILY SSF53474 6 235 7.73E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS33250 f8fb7a4ee65421b686697be0725fa800 243 Gene3D G3DSA:3.40.50.1820 21 236 1.7E-35 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS33250 f8fb7a4ee65421b686697be0725fa800 243 Pfam PF01738 Dienelactone hydrolase family 110 217 6.9E-8 T 06-07-2017 IPR002925 Dienelactone hydrolase GO:0016787 CDO28_RS21615 d2832dc0e8d5eaa039b856fe470d0a9d 158 Pfam PF13827 Domain of unknown function (DUF4189) 105 157 6.7E-8 T 06-07-2017 IPR025240 Domain of unknown function DUF4189 CDO28_RS21615 d2832dc0e8d5eaa039b856fe470d0a9d 158 Pfam PF13827 Domain of unknown function (DUF4189) 43 91 6.1E-9 T 06-07-2017 IPR025240 Domain of unknown function DUF4189 CDO28_RS10395 6f40fe61adf0b297fb09d2b7038be1ae 203 Gene3D G3DSA:2.60.120.590 4 202 6.1E-54 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CDO28_RS10395 6f40fe61adf0b297fb09d2b7038be1ae 203 SUPERFAMILY SSF51197 4 201 6.32E-55 T 06-07-2017 CDO28_RS10395 6f40fe61adf0b297fb09d2b7038be1ae 203 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 7 199 1.5E-56 T 06-07-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CDO28_RS10025 0db30f870ec4cd0ce109995c36b3285f 295 Gene3D G3DSA:1.10.3720.10 19 282 4.5E-67 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10025 0db30f870ec4cd0ce109995c36b3285f 295 SUPERFAMILY SSF161098 19 294 1.12E-75 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10025 0db30f870ec4cd0ce109995c36b3285f 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 284 2.8E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08245 5469d9af81704febb13787c909eaec42 907 Pfam PF01345 Domain of unknown function DUF11 163 242 1.4E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08245 5469d9af81704febb13787c909eaec42 907 Pfam PF01345 Domain of unknown function DUF11 801 859 3.0E-7 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08245 5469d9af81704febb13787c909eaec42 907 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 543 628 6.4E-6 T 06-07-2017 IPR018905 Alpha-galactosidase, NEW3 domain CDO28_RS08245 5469d9af81704febb13787c909eaec42 907 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 204 242 8.6E-9 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS08245 5469d9af81704febb13787c909eaec42 907 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 818 863 3.8E-8 T 06-07-2017 IPR001434 Domain of unknown function DUF11 CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 Gene3D G3DSA:1.10.10.10 12 142 1.1E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 SMART SM00347 37 140 4.4E-18 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 2.1E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 2.1E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 2.1E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 SUPERFAMILY SSF46785 12 146 2.23E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12940 acc12200cc6b2ab86d07940a544a437c 148 Pfam PF01047 MarR family 44 100 9.6E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12705 e940fa03934752a332af4fff75b70116 70 Gene3D G3DSA:1.20.1250.20 3 65 2.1E-4 T 06-07-2017 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 Pfam PF01799 [2Fe-2S] binding domain 125 197 2.1E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 Gene3D G3DSA:1.10.150.120 127 205 1.8E-31 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 59 110 3.1E-7 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 SUPERFAMILY SSF47741 136 205 2.09E-29 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 SUPERFAMILY SSF54292 54 130 2.62E-26 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 Gene3D G3DSA:3.10.20.30 53 126 4.4E-32 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS19005 c7f43599375173ce30f4ab8de9517440 206 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 91 99 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 Gene3D G3DSA:2.40.440.10 25 137 2.2E-22 T 06-07-2017 CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 Pfam PF01471 Putative peptidoglycan binding domain 213 267 8.3E-14 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 Gene3D G3DSA:1.10.101.10 212 267 4.0E-13 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 SUPERFAMILY SSF47090 205 271 5.18E-15 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 SUPERFAMILY SSF141523 27 137 2.62E-29 T 06-07-2017 CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 PIRSF PIRSF029342 1 408 6.7E-162 T 06-07-2017 IPR016915 Uncharacterised conserved protein UCP029342 CDO28_RS04000 e470ed427514ad2d1e97b39d4e87cdf3 408 Pfam PF03734 L,D-transpeptidase catalytic domain 30 137 4.7E-21 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS29520 4065c9afa6ab4aa5dddcbdc17521d68c 83 Pfam PF06568 Domain of unknown function (DUF1127) 30 63 1.5E-4 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS13925 661f6cefda072314ae316212e082aa2d 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 8 186 3.5E-60 T 06-07-2017 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDO28_RS13925 661f6cefda072314ae316212e082aa2d 192 Pfam PF01923 Cobalamin adenosyltransferase 7 176 6.5E-62 T 06-07-2017 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDO28_RS13925 661f6cefda072314ae316212e082aa2d 192 SUPERFAMILY SSF89028 6 187 3.73E-62 T 06-07-2017 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDO28_RS13925 661f6cefda072314ae316212e082aa2d 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 13 150 1.0E-63 T 06-07-2017 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDO28_RS13925 661f6cefda072314ae316212e082aa2d 192 Gene3D G3DSA:1.20.1200.10 16 190 2.1E-66 T 06-07-2017 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDO28_RS30870 302417f75af773365bfb15812cb9d0a3 347 Pfam PF01032 FecCD transport family 26 340 1.3E-87 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS30870 302417f75af773365bfb15812cb9d0a3 347 Gene3D G3DSA:1.10.3470.10 19 346 5.5E-100 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS30870 302417f75af773365bfb15812cb9d0a3 347 SUPERFAMILY SSF81345 19 340 1.06E-76 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS04030 111c8ade9c196a54b8832451fc204235 71 SUPERFAMILY SSF47598 6 40 3.2E-6 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS04030 111c8ade9c196a54b8832451fc204235 71 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 40 3.1E-7 T 06-07-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 CDO28_RS08385 66e4a3d5918c9d6d863c91cde0cce10d 128 Pfam PF05656 Protein of unknown function (DUF805) 14 120 1.6E-16 T 06-07-2017 IPR008523 Protein of unknown function DUF805 GO:0016021 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 35.204 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 4.8E-96 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Gene3D G3DSA:1.10.10.200 1 80 4.1E-36 T 06-07-2017 IPR017856 Integrase, N-terminal zinc-binding domain-like CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Gene3D G3DSA:3.30.70.980 136 204 1.9E-23 T 06-07-2017 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Gene3D G3DSA:3.30.1270.10 81 135 2.1E-42 T 06-07-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Gene3D G3DSA:3.30.1270.10 211 246 2.1E-42 T 06-07-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 SUPERFAMILY SSF75625 3 245 5.36E-96 T 06-07-2017 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS13355 09ea4d42f3f4007a672c451a77615ce2 248 Pfam PF01709 Transcriptional regulator 5 236 3.2E-95 T 06-07-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS09285 561cc20230786d77b862679a7cec4372 175 Pfam PF07886 BA14K-like protein 142 171 3.6E-13 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS26280 01b8e43aa657b7b5db410f944bfa4b69 261 Gene3D G3DSA:1.10.12.10 205 260 1.9E-8 T 06-07-2017 IPR014748 Crontonase, C-terminal CDO28_RS26280 01b8e43aa657b7b5db410f944bfa4b69 261 SUPERFAMILY SSF52096 1 260 4.54E-66 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26280 01b8e43aa657b7b5db410f944bfa4b69 261 Gene3D G3DSA:3.90.226.10 2 197 3.0E-53 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS26280 01b8e43aa657b7b5db410f944bfa4b69 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 261 6.9E-47 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS26360 4050a16fc0ab948ca32921e3162ff052 311 SUPERFAMILY SSF53613 2 294 3.9E-53 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS26360 4050a16fc0ab948ca32921e3162ff052 311 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 254 267 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS26360 4050a16fc0ab948ca32921e3162ff052 311 Pfam PF00294 pfkB family carbohydrate kinase 4 292 6.4E-35 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS26360 4050a16fc0ab948ca32921e3162ff052 311 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS26360 4050a16fc0ab948ca32921e3162ff052 311 Gene3D G3DSA:3.40.1190.20 1 293 3.0E-52 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS10530 2484f9fa929166a4b985f65020e649c3 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 313 8.0E-47 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS00525 b54069d1bfec7c42f01c0e9bfeea6703 110 Pfam PF02625 XdhC and CoxI family 17 84 3.1E-25 T 06-07-2017 IPR003777 XdhC- CoxI CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 Pfam PF02277 Phosphoribosyltransferase 20 334 2.2E-110 T 06-07-2017 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 Gene3D G3DSA:1.10.1610.10 9 78 1.5E-29 T 06-07-2017 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 22 334 4.1E-113 T 06-07-2017 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 20 336 34.918 T 06-07-2017 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 SUPERFAMILY SSF52733 12 336 1.57E-111 T 06-07-2017 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18680 2c055163ba28c7b615b06550a96a7104 338 Gene3D G3DSA:3.40.50.10210 79 316 3.1E-86 T 06-07-2017 CDO28_RS09055 919a77d44f0816aa3296aa7054a475f1 290 Pfam PF00892 EamA-like transporter family 145 276 8.2E-26 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS09055 919a77d44f0816aa3296aa7054a475f1 290 Pfam PF00892 EamA-like transporter family 8 134 2.0E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS09055 919a77d44f0816aa3296aa7054a475f1 290 SUPERFAMILY SSF103481 44 137 4.18E-8 T 06-07-2017 CDO28_RS09055 919a77d44f0816aa3296aa7054a475f1 290 SUPERFAMILY SSF103481 178 280 4.58E-17 T 06-07-2017 CDO28_RS15805 a311b103ef02a9502f58edcfe6cf9e89 608 SUPERFAMILY SSF48452 386 579 6.83E-18 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS15805 a311b103ef02a9502f58edcfe6cf9e89 608 SUPERFAMILY SSF46894 7 80 9.64E-7 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS15805 a311b103ef02a9502f58edcfe6cf9e89 608 Gene3D G3DSA:1.25.40.10 365 578 1.7E-22 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13085 013bd5717ecaa20507b148e457cfb1f5 478 Pfam PF10082 Putative beta-barrel porin 2 104 478 7.7E-107 T 06-07-2017 IPR018759 Putative beta-barrel porin 2 CDO28_RS13085 013bd5717ecaa20507b148e457cfb1f5 478 Gene3D G3DSA:2.40.160.20 196 346 6.7E-6 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS27370 7f137e331ea616bbe2d71a3b9046b3c5 165 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 9 137 3.3E-31 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS33585 3a2c753d82c4e661577e2c799771bdb5 234 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 94 128 0.0087 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS33585 3a2c753d82c4e661577e2c799771bdb5 234 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 170 203 3.4E-5 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS33585 3a2c753d82c4e661577e2c799771bdb5 234 Gene3D G3DSA:2.160.10.10 73 226 2.4E-35 T 06-07-2017 CDO28_RS33585 3a2c753d82c4e661577e2c799771bdb5 234 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 179 207 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS33585 3a2c753d82c4e661577e2c799771bdb5 234 SUPERFAMILY SSF51161 74 224 2.69E-32 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS31715 02c780bd6878ea9fb7347c07440263c8 139 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 12 135 3.0E-22 T 06-07-2017 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 296 1.1E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 312 1.1E-5 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 Gene3D G3DSA:1.10.10.60 267 315 4.0E-17 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 SMART SM00342 229 312 8.8E-31 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 Gene3D G3DSA:1.10.10.60 208 266 3.0E-19 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 266 308 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 SUPERFAMILY SSF46689 265 315 6.1E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 SUPERFAMILY SSF46689 213 264 1.12E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS28530 f05a7fe472126660cfeaab5a6bb42ff3 316 Pfam PF12833 Helix-turn-helix domain 235 313 6.1E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 329 412 2.5E-29 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 SUPERFAMILY SSF142019 4 237 1.03E-89 T 06-07-2017 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 340 351 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 165 180 - T 06-07-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 46 217 5.5E-53 T 06-07-2017 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 6 413 1.7E-200 T 06-07-2017 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 SUPERFAMILY SSF140490 323 421 9.29E-35 T 06-07-2017 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 SUPERFAMILY SSF142984 239 322 3.01E-24 T 06-07-2017 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 SMART SM00928 327 372 6.3E-24 T 06-07-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24735 a3f0d3c97a8e4286f2be86951114150a 421 Pfam PF10531 SLBB domain 241 290 1.4E-11 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 Pfam PF00005 ABC transporter 292 447 6.0E-16 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 Pfam PF00005 ABC transporter 34 184 6.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 ProSitePatterns PS00211 ABC transporters family signature. 420 434 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 SUPERFAMILY SSF52540 17 245 7.82E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 Gene3D G3DSA:3.40.50.300 270 510 6.8E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 SMART SM00382 43 232 5.3E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 SMART SM00382 301 496 0.47 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 SUPERFAMILY SSF52540 270 506 1.41E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29660 d6069621d10af2f9aa41ce34dd6be057 526 Gene3D G3DSA:3.40.50.300 12 248 1.2E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 Pfam PF00106 short chain dehydrogenase 82 174 6.9E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 SUPERFAMILY SSF51735 81 268 5.65E-29 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 240 257 5.8E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 164 5.8E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 100 5.8E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 240 5.8E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23715 bc4d3bc8a654b082598ec515f48d820b 328 Gene3D G3DSA:3.40.50.720 82 295 5.2E-27 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20655 cf159c843f99d6c1381c0dfc4da9b639 138 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 8 136 1.1E-49 T 06-07-2017 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CDO28_RS20655 cf159c843f99d6c1381c0dfc4da9b639 138 Pfam PF02566 OsmC-like protein 39 135 5.4E-17 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS20655 cf159c843f99d6c1381c0dfc4da9b639 138 SUPERFAMILY SSF82784 5 137 3.01E-40 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS20655 cf159c843f99d6c1381c0dfc4da9b639 138 Gene3D G3DSA:3.30.300.20 47 137 1.8E-34 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS20655 cf159c843f99d6c1381c0dfc4da9b639 138 Gene3D G3DSA:2.20.25.10 4 46 1.0E-16 T 06-07-2017 CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 SUPERFAMILY SSF51735 5 252 7.54E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 249 2.8E-62 T 06-07-2017 CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.6E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.6E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.6E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS16020 eab82c74c1cc1245f50be11b63d96077 253 Gene3D G3DSA:3.40.50.720 3 251 3.3E-80 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29405 8782e3eeaa7fc4899de02fff6d0e4472 409 Pfam PF00534 Glycosyl transferases group 1 236 385 3.7E-30 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS29405 8782e3eeaa7fc4899de02fff6d0e4472 409 Gene3D G3DSA:3.40.50.2000 232 384 8.8E-26 T 06-07-2017 CDO28_RS29405 8782e3eeaa7fc4899de02fff6d0e4472 409 Pfam PF13439 Glycosyltransferase Family 4 72 224 1.2E-12 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS29405 8782e3eeaa7fc4899de02fff6d0e4472 409 SUPERFAMILY SSF53756 7 404 2.77E-70 T 06-07-2017 CDO28_RS30815 ee685baedd5441381e713dd817b51978 436 Pfam PF03428 Replication protein C N-terminal domain 13 185 8.5E-72 T 06-07-2017 IPR005090 Replication protein C CDO28_RS30815 ee685baedd5441381e713dd817b51978 436 Pfam PF11800 Replication protein C C-terminal region 194 428 1.0E-73 T 06-07-2017 IPR021760 Replication protein-C C-terminal CDO28_RS24560 b1f193c950268f2a507e6484b2838d1a 172 Pfam PF08808 RES domain 6 165 1.6E-23 T 06-07-2017 IPR014914 RES domain CDO28_RS15420 ad93b35046c958c4f4582223732aa13d 180 Gene3D G3DSA:3.40.50.2020 6 178 3.1E-70 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS15420 ad93b35046c958c4f4582223732aa13d 180 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 176 2.7E-66 T 06-07-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 CDO28_RS15420 ad93b35046c958c4f4582223732aa13d 180 SUPERFAMILY SSF53271 9 176 1.44E-54 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS15420 ad93b35046c958c4f4582223732aa13d 180 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 8 177 37.498 T 06-07-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 CDO28_RS15420 ad93b35046c958c4f4582223732aa13d 180 Pfam PF00156 Phosphoribosyl transferase domain 34 166 2.1E-16 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 PIRSF PIRSF005384 1 148 5.2E-55 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 143 1.6E-44 T 06-07-2017 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 Gene3D G3DSA:3.40.1400.10 1 147 9.8E-55 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 146 2.4E-45 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 SUPERFAMILY SSF89623 1 146 4.05E-51 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS32440 91511612e0d6c74f1d861f610247c449 148 Pfam PF02502 Ribose/Galactose Isomerase 3 141 2.5E-47 T 06-07-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CDO28_RS11130 5fa37ae03ab53de0056c42ccd4ae70a4 111 Pfam PF01817 Chorismate mutase type II 14 89 5.3E-18 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS11130 5fa37ae03ab53de0056c42ccd4ae70a4 111 SUPERFAMILY SSF48600 1 93 1.25E-26 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS11130 5fa37ae03ab53de0056c42ccd4ae70a4 111 Gene3D G3DSA:1.20.59.10 4 92 3.3E-22 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS11130 5fa37ae03ab53de0056c42ccd4ae70a4 111 SMART SM00830 14 94 5.9E-25 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS11130 5fa37ae03ab53de0056c42ccd4ae70a4 111 TIGRFAM TIGR01795 CM_mono_cladeE: chorismate mutase 6 97 5.8E-49 T 06-07-2017 IPR010951 Chorismate mutase, bacteria CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 486 8.5E-191 T 06-07-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 7.5E-50 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 7.5E-50 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 7.5E-50 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 7.5E-50 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 7.5E-50 T 06-07-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04065 40e4b432170f1c420ebe2ea38ad3fec0 503 Pfam PF00361 Proton-conducting membrane transporter 133 420 4.6E-93 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 SUPERFAMILY SSF53850 23 252 1.83E-51 T 06-07-2017 CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 SMART SM00062 32 261 5.6E-51 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 Gene3D G3DSA:3.40.190.10 29 122 1.3E-18 T 06-07-2017 CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 Gene3D G3DSA:3.40.190.10 221 250 1.3E-18 T 06-07-2017 CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 Gene3D G3DSA:3.40.190.10 123 220 2.1E-14 T 06-07-2017 CDO28_RS13650 2a115d70c8b4f335845567e8f8c901d9 336 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 251 1.8E-32 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 Gene3D G3DSA:3.90.470.10 14 123 2.6E-41 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 Pfam PF00237 Ribosomal protein L22p/L17e 20 119 5.0E-30 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 17 119 7.2E-34 T 06-07-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 SUPERFAMILY SSF54843 6 123 5.62E-41 T 06-07-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 26.02 T 06-07-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDO28_RS03605 793fa7aa2a32b0992e89d6c7fad729bb 129 ProSitePatterns PS00464 Ribosomal protein L22 signature. 95 119 - T 06-07-2017 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 Gene3D G3DSA:3.40.640.10 152 368 3.6E-46 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 86 1.2E-12 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 SUPERFAMILY SSF53383 102 471 2.01E-69 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 Gene3D G3DSA:1.10.10.10 14 87 8.4E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 SUPERFAMILY SSF46785 16 90 1.61E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 SMART SM00345 27 86 1.8E-9 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS25930 8f66517228401153e837f4a48d29a803 480 Pfam PF00155 Aminotransferase class I and II 132 392 5.4E-17 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS18195 1edd5b7111830eb30edfb9d5932b562d 101 SUPERFAMILY SSF48295 7 35 5.18E-6 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS18195 1edd5b7111830eb30edfb9d5932b562d 101 Pfam PF01527 Transposase 7 41 1.1E-6 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS18195 1edd5b7111830eb30edfb9d5932b562d 101 Gene3D G3DSA:1.10.10.10 7 36 3.3E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06390 2bafd39b3d5090d7d73d90153e38dd5a 216 Gene3D G3DSA:3.30.420.10 35 174 5.7E-43 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS06390 2bafd39b3d5090d7d73d90153e38dd5a 216 Pfam PF01351 Ribonuclease HII 36 211 1.1E-37 T 06-07-2017 IPR024567 Ribonuclease HII/HIII domain CDO28_RS06390 2bafd39b3d5090d7d73d90153e38dd5a 216 Hamap MF_00052_B Ribonuclease HII [rnhB]. 34 213 35.923 T 06-07-2017 IPR022898 Ribonuclease HII GO:0004523 CDO28_RS06390 2bafd39b3d5090d7d73d90153e38dd5a 216 SUPERFAMILY SSF53098 23 215 3.03E-64 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS12640 5ef9a4b4e748d9f1f0015163ee63ec19 350 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 5.0E-19 T 06-07-2017 IPR011418 AP endonuclease, family 2, C-terminal CDO28_RS12640 5ef9a4b4e748d9f1f0015163ee63ec19 350 SUPERFAMILY SSF51658 8 323 8.71E-64 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12640 5ef9a4b4e748d9f1f0015163ee63ec19 350 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 4.3E-37 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12640 5ef9a4b4e748d9f1f0015163ee63ec19 350 Gene3D G3DSA:3.20.20.150 10 324 2.0E-69 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 Pfam PF01817 Chorismate mutase type II 14 91 8.0E-17 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 SUPERFAMILY SSF48600 17 99 2.59E-21 T 06-07-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 Gene3D G3DSA:3.10.180.10 108 252 1.5E-33 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 SMART SM00830 14 94 2.1E-21 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 ProSitePatterns PS00934 Glyoxalase I signature 1. 111 132 - T 06-07-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 Gene3D G3DSA:1.20.59.10 7 92 1.9E-17 T 06-07-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 SUPERFAMILY SSF54593 107 258 4.83E-33 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS34370 6d336f4c65febd338ec2c678a8256919 260 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 108 233 9.7E-16 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS00185 8aae6e705ad314584246fcdf61dfc914 122 SUPERFAMILY SSF47226 17 104 3.93E-17 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS00185 8aae6e705ad314584246fcdf61dfc914 122 Pfam PF01627 Hpt domain 44 97 6.3E-8 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS00185 8aae6e705ad314584246fcdf61dfc914 122 Gene3D G3DSA:1.20.120.160 18 121 2.8E-20 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS31210 4bf37fcf39979548a812ecbbdf7a9f5c 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 51 1.5E-6 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS31210 4bf37fcf39979548a812ecbbdf7a9f5c 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 8 51 4.2E-14 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS31210 4bf37fcf39979548a812ecbbdf7a9f5c 91 Gene3D G3DSA:1.10.1220.10 4 44 6.1E-6 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS31210 4bf37fcf39979548a812ecbbdf7a9f5c 91 SUPERFAMILY SSF47598 3 50 1.33E-11 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 Pfam PF01321 Creatinase/Prolidase N-terminal domain 51 197 1.8E-13 T 06-07-2017 IPR000587 Creatinase, N-terminal GO:0016787 CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 SUPERFAMILY SSF55920 196 427 1.19E-48 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 SUPERFAMILY SSF53092 40 195 2.96E-11 T 06-07-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 Gene3D G3DSA:3.40.350.10 49 195 5.3E-12 T 06-07-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 Gene3D G3DSA:3.90.230.10 197 426 1.9E-40 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS24605 ba960768c6fbc1d274e6df9e81d7201c 434 Pfam PF00557 Metallopeptidase family M24 208 414 3.7E-31 T 06-07-2017 IPR000994 Peptidase M24, structural domain CDO28_RS24465 b055c91e423d0e9387f20b1d5709c8ce 313 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 299 1.5E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS24465 b055c91e423d0e9387f20b1d5709c8ce 313 Gene3D G3DSA:1.10.3470.10 66 220 1.3E-4 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS31765 3b81dcc24d11fab80c807940e1fed627 264 SUPERFAMILY SSF53335 46 226 6.14E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS31765 3b81dcc24d11fab80c807940e1fed627 264 Gene3D G3DSA:3.40.50.150 55 225 3.0E-21 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS31765 3b81dcc24d11fab80c807940e1fed627 264 Pfam PF08003 Protein of unknown function (DUF1698) 44 153 1.6E-15 T 06-07-2017 IPR027555 tRNA (mo5U34)-methyltransferase-like CDO28_RS31765 3b81dcc24d11fab80c807940e1fed627 264 TIGRFAM TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 family 11 234 9.0E-115 T 06-07-2017 IPR027554 Methyltransferase, Rta_06860 family CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 Gene3D G3DSA:3.40.190.10 33 183 6.1E-28 T 06-07-2017 CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 Pfam PF13343 Bacterial extracellular solute-binding protein 86 300 1.4E-20 T 06-07-2017 CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 30 335 2.5E-116 T 06-07-2017 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 SUPERFAMILY SSF53850 33 335 3.87E-65 T 06-07-2017 CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 20 341 5.8E-120 T 06-07-2017 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein GO:0005524|GO:0015888|GO:0030288|GO:0048502 CDO28_RS11075 0168e0d630ebfcae0353b77bfcc781f0 342 Gene3D G3DSA:3.40.190.10 190 296 6.9E-9 T 06-07-2017 CDO28_RS21190 abaab053f656efb233a1c2fee4427721 359 Gene3D G3DSA:3.30.70.100 246 346 0.001 T 06-07-2017 CDO28_RS21190 abaab053f656efb233a1c2fee4427721 359 SUPERFAMILY SSF50182 165 239 4.58E-11 T 06-07-2017 IPR010920 LSM domain CDO28_RS21190 abaab053f656efb233a1c2fee4427721 359 Pfam PF00924 Mechanosensitive ion channel 121 337 9.9E-28 T 06-07-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDO28_RS21190 abaab053f656efb233a1c2fee4427721 359 SUPERFAMILY SSF103473 28 177 4.58E-6 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21190 abaab053f656efb233a1c2fee4427721 359 Gene3D G3DSA:2.30.30.60 179 238 4.0E-10 T 06-07-2017 CDO28_RS25815 e76fe9c16937b85d201d98be23d53c6b 194 Gene3D G3DSA:3.40.50.150 7 164 9.8E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS25815 e76fe9c16937b85d201d98be23d53c6b 194 SUPERFAMILY SSF53335 8 178 3.91E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS25815 e76fe9c16937b85d201d98be23d53c6b 194 Pfam PF13489 Methyltransferase domain 30 161 1.1E-8 T 06-07-2017 CDO28_RS11780 c996e684d007c70af1b98833efd09f18 384 SUPERFAMILY SSF52540 62 209 1.22E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11780 c996e684d007c70af1b98833efd09f18 384 Pfam PF03969 AFG1-like ATPase 10 375 5.3E-131 T 06-07-2017 IPR005654 ATPase, AFG1-like GO:0005524 CDO28_RS11780 c996e684d007c70af1b98833efd09f18 384 Gene3D G3DSA:3.40.50.300 57 209 1.1E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16060 d4d91c0f69280bcb01376b648c1b6590 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 288 1.8E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16060 d4d91c0f69280bcb01376b648c1b6590 307 SUPERFAMILY SSF161098 65 289 5.49E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16060 d4d91c0f69280bcb01376b648c1b6590 307 Gene3D G3DSA:1.10.3720.10 70 293 3.8E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08575 c71ee83ca75a37bb895def2db0ea5dd7 296 SUPERFAMILY SSF55729 37 259 2.96E-38 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08575 c71ee83ca75a37bb895def2db0ea5dd7 296 Gene3D G3DSA:3.40.630.30 39 183 2.1E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08575 c71ee83ca75a37bb895def2db0ea5dd7 296 Pfam PF13444 Acetyltransferase (GNAT) domain 54 164 3.8E-33 T 06-07-2017 CDO28_RS15065 0d61d561f99be3327d802ab6c7d2d542 316 SUPERFAMILY SSF53807 54 308 2.24E-51 T 06-07-2017 CDO28_RS15065 0d61d561f99be3327d802ab6c7d2d542 316 Gene3D G3DSA:3.40.50.1980 53 171 1.1E-22 T 06-07-2017 CDO28_RS15065 0d61d561f99be3327d802ab6c7d2d542 316 Pfam PF01497 Periplasmic binding protein 55 285 3.5E-30 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS15065 0d61d561f99be3327d802ab6c7d2d542 316 Gene3D G3DSA:3.40.50.1980 184 308 9.5E-18 T 06-07-2017 CDO28_RS20835 25782e541baea337f07cfc805e1ee1d7 398 Gene3D G3DSA:1.50.10.10 5 396 6.6E-120 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 CDO28_RS20835 25782e541baea337f07cfc805e1ee1d7 398 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 35 386 1.8E-123 T 06-07-2017 CDO28_RS20835 25782e541baea337f07cfc805e1ee1d7 398 SUPERFAMILY SSF48208 7 396 5.95E-115 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS16975 95f09aa31b017ee1db7ca9cb88521a30 232 Gene3D G3DSA:2.40.440.10 83 222 1.6E-30 T 06-07-2017 CDO28_RS16975 95f09aa31b017ee1db7ca9cb88521a30 232 SUPERFAMILY SSF141523 160 221 1.44E-28 T 06-07-2017 CDO28_RS16975 95f09aa31b017ee1db7ca9cb88521a30 232 SUPERFAMILY SSF141523 85 133 1.44E-28 T 06-07-2017 CDO28_RS16975 95f09aa31b017ee1db7ca9cb88521a30 232 Pfam PF03734 L,D-transpeptidase catalytic domain 87 221 2.2E-14 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 Gene3D G3DSA:2.120.10.30 135 451 1.7E-61 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 Gene3D G3DSA:2.120.10.30 18 26 1.7E-61 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 Gene3D G3DSA:2.120.10.30 69 102 1.7E-61 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 SUPERFAMILY SSF50952 70 102 3.01E-36 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 SUPERFAMILY SSF50952 154 445 3.01E-36 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS27435 049341be4d077b1d84fc8e5f329168d4 517 Pfam PF07995 Glucose / Sorbosone dehydrogenase 192 372 4.3E-14 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS19420 4ec2d4603aa935a2c237ba8bc62b3453 132 Pfam PF01614 Bacterial transcriptional regulator 13 132 3.2E-31 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS19420 4ec2d4603aa935a2c237ba8bc62b3453 132 Gene3D G3DSA:3.30.450.40 13 132 1.4E-40 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS19420 4ec2d4603aa935a2c237ba8bc62b3453 132 SUPERFAMILY SSF55781 13 132 2.65E-35 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS24775 d21d78f47e4f54275972835c94e648b9 586 Pfam PF00361 Proton-conducting membrane transporter 111 380 1.5E-40 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24775 d21d78f47e4f54275972835c94e648b9 586 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 274 286 5.5E-7 T 06-07-2017 CDO28_RS24775 d21d78f47e4f54275972835c94e648b9 586 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 213 239 5.5E-7 T 06-07-2017 CDO28_RS24775 d21d78f47e4f54275972835c94e648b9 586 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 65 90 5.5E-7 T 06-07-2017 CDO28_RS24775 d21d78f47e4f54275972835c94e648b9 586 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 191 212 5.5E-7 T 06-07-2017 CDO28_RS33560 bec0cc163e3aa4674033820318b2c560 736 Pfam PF13205 Bacterial Ig-like domain 37 139 1.1E-13 T 06-07-2017 IPR032812 SbsA, Ig-like domain CDO28_RS28980 c9085322524121670c25f3978ca34205 280 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 201 1.1E-23 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS28980 c9085322524121670c25f3978ca34205 280 Gene3D G3DSA:3.40.50.720 3 217 8.4E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28980 c9085322524121670c25f3978ca34205 280 SUPERFAMILY SSF51735 4 223 1.37E-31 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15285 5912a4c80641d3d3dbffabe7f62f149c 154 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 154 69.021 T 06-07-2017 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDO28_RS15285 5912a4c80641d3d3dbffabe7f62f149c 154 SUPERFAMILY SSF55620 25 145 2.15E-27 T 06-07-2017 CDO28_RS15285 5912a4c80641d3d3dbffabe7f62f149c 154 Gene3D G3DSA:3.30.1130.10 12 139 4.0E-46 T 06-07-2017 CDO28_RS15285 5912a4c80641d3d3dbffabe7f62f149c 154 Pfam PF14489 QueF-like protein 58 136 3.6E-33 T 06-07-2017 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDO28_RS15285 5912a4c80641d3d3dbffabe7f62f149c 154 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 23 133 5.0E-44 T 06-07-2017 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 PRINTS PR01036 Tetracycline resistance protein TetB signature 152 176 2.2E-6 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 PRINTS PR01036 Tetracycline resistance protein TetB signature 177 201 2.2E-6 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 PRINTS PR01036 Tetracycline resistance protein TetB signature 417 436 2.2E-6 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 PRINTS PR01036 Tetracycline resistance protein TetB signature 31 55 2.2E-6 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 Gene3D G3DSA:1.20.1250.20 281 442 1.4E-18 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 Gene3D G3DSA:1.20.1250.20 29 203 6.7E-28 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 Gene3D G3DSA:1.20.1250.20 498 516 1.4E-18 T 06-07-2017 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 26 510 9.7E-137 T 06-07-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 Pfam PF07690 Major Facilitator Superfamily 34 426 3.7E-42 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 SUPERFAMILY SSF103473 493 517 7.85E-63 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 SUPERFAMILY SSF103473 22 217 7.85E-63 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS12615 5b0a706035611e3d48e5b9fc218ec5a5 529 SUPERFAMILY SSF103473 266 436 7.85E-63 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 SUPERFAMILY SSF56601 216 329 8.2E-53 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 SUPERFAMILY SSF56601 32 181 8.2E-53 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 PRINTS PR00118 Beta-lactamase class A signature 261 276 1.1E-11 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 PRINTS PR00118 Beta-lactamase class A signature 208 233 1.1E-11 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 PRINTS PR00118 Beta-lactamase class A signature 36 60 1.1E-11 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 PRINTS PR00118 Beta-lactamase class A signature 112 137 1.1E-11 T 06-07-2017 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 Pfam PF13354 Beta-lactamase enzyme family 59 305 4.6E-49 T 06-07-2017 CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 Gene3D G3DSA:3.40.710.10 211 332 1.1E-73 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS19155 c743db0eb1e5521ba58c7d335d5956ee 334 Gene3D G3DSA:3.40.710.10 33 176 1.1E-73 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS23300 c3438b76bde698abf11e743488fda16e 81 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 14 49 9.2E-6 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 SUPERFAMILY SSF100950 76 235 1.15E-19 T 06-07-2017 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 SUPERFAMILY SSF46785 8 65 6.45E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 Gene3D G3DSA:3.40.50.1360 76 214 5.1E-7 T 06-07-2017 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 5.4E-9 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 5.4E-9 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 SMART SM00420 9 61 3.9E-14 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 SMART SM01134 73 234 1.6E-37 T 06-07-2017 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 Pfam PF08220 DeoR-like helix-turn-helix domain 9 61 2.0E-14 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 Gene3D G3DSA:1.10.10.10 7 58 4.7E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22120 887cf4183eb52f58b8253399cc6a13f9 268 Pfam PF00455 DeoR C terminal sensor domain 77 233 6.1E-37 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS02920 51987ebd16b66154158c796d972117b3 395 Gene3D G3DSA:3.40.630.30 186 339 2.6E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS02920 51987ebd16b66154158c796d972117b3 395 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 13 389 5.7E-160 T 06-07-2017 IPR007434 Peptidogalycan biosysnthesis/recognition CDO28_RS02920 51987ebd16b66154158c796d972117b3 395 SUPERFAMILY SSF55729 191 357 5.14E-38 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS16200 b1ece3c498be4899ddde9b2f3e1f84f6 461 Gene3D G3DSA:3.40.605.10 4 242 6.7E-61 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS16200 b1ece3c498be4899ddde9b2f3e1f84f6 461 Gene3D G3DSA:3.40.309.10 243 428 1.5E-63 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS16200 b1ece3c498be4899ddde9b2f3e1f84f6 461 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 228 235 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS16200 b1ece3c498be4899ddde9b2f3e1f84f6 461 SUPERFAMILY SSF53720 4 456 5.5E-135 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS16200 b1ece3c498be4899ddde9b2f3e1f84f6 461 Pfam PF00171 Aldehyde dehydrogenase family 4 453 2.8E-121 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS34195 5b0693b19d1267547fc75a6e79c283a8 207 PIRSF PIRSF010372 1 206 3.2E-62 T 06-07-2017 IPR007396 Transcriptional regulator PAI 2-type CDO28_RS34195 5b0693b19d1267547fc75a6e79c283a8 207 Pfam PF04299 Putative FMN-binding domain 1 165 4.0E-55 T 06-07-2017 IPR007396 Transcriptional regulator PAI 2-type CDO28_RS34195 5b0693b19d1267547fc75a6e79c283a8 207 Gene3D G3DSA:2.30.110.10 1 204 6.1E-65 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS34195 5b0693b19d1267547fc75a6e79c283a8 207 SUPERFAMILY SSF50475 10 196 5.49E-30 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS11530 adaa3b175b8c3bf621238bdcfc5ea619 160 Gene3D G3DSA:3.40.1280.10 1 159 1.2E-56 T 06-07-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDO28_RS11530 adaa3b175b8c3bf621238bdcfc5ea619 160 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 27.964 T 06-07-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS11530 adaa3b175b8c3bf621238bdcfc5ea619 160 PIRSF PIRSF004505 1 159 4.9E-48 T 06-07-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS11530 adaa3b175b8c3bf621238bdcfc5ea619 160 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 2.1E-45 T 06-07-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CDO28_RS11530 adaa3b175b8c3bf621238bdcfc5ea619 160 SUPERFAMILY SSF75217 1 157 3.47E-47 T 06-07-2017 IPR029028 Alpha/beta knot methyltransferases CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 Hamap MF_00970 Ribonuclease E [rne]. 2 921 33.283 T 06-07-2017 IPR028878 Ribonuclease E GO:0006396|GO:0008995 CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 Pfam PF10150 Ribonuclease E/G family 274 545 8.4E-95 T 06-07-2017 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 SUPERFAMILY SSF50249 234 278 3.33E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 SUPERFAMILY SSF50249 40 81 3.33E-14 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 578 1.5E-155 T 06-07-2017 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 Gene3D G3DSA:2.40.50.140 31 83 4.8E-41 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS03805 1e602c138c81d3600fcf2ed67b2789d2 924 Gene3D G3DSA:2.40.50.140 236 278 4.8E-41 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 604 0.0 T 06-07-2017 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 508 519 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 SUPERFAMILY SSF143975 5 421 3.14E-140 T 06-07-2017 CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 Pfam PF00920 Dehydratase family 68 600 7.1E-157 T 06-07-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 156 166 - T 06-07-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDO28_RS07120 9eaa4eb6fe22425ab2f70d119908a484 606 SUPERFAMILY SSF52016 422 604 2.59E-57 T 06-07-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 06-07-2017 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 415 1.9E-46 T 06-07-2017 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 Gene3D G3DSA:3.40.50.720 2 169 2.3E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 SUPERFAMILY SSF56327 172 446 3.28E-60 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 4.2E-16 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 4.2E-16 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 4.2E-16 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 4.2E-16 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 4.2E-16 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 Pfam PF02056 Family 4 glycosyl hydrolase 5 186 1.4E-45 T 06-07-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 Gene3D G3DSA:3.90.110.10 170 448 1.8E-69 T 06-07-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDO28_RS30540 747c96fc8986702638e82a035bf71d4c 490 SUPERFAMILY SSF51735 3 169 7.9E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS17760 39f2743a678d4e2336f157a923e35ccb 342 Pfam PF00248 Aldo/keto reductase family 28 325 9.9E-65 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS17760 39f2743a678d4e2336f157a923e35ccb 342 SUPERFAMILY SSF51430 13 326 1.02E-86 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS17760 39f2743a678d4e2336f157a923e35ccb 342 Gene3D G3DSA:3.20.20.100 12 330 7.7E-84 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS03710 cf9f2d80fb68539c87d24b8df1386d48 297 SUPERFAMILY SSF51735 2 294 2.38E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03710 cf9f2d80fb68539c87d24b8df1386d48 297 Gene3D G3DSA:3.40.50.720 2 228 1.6E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS03710 cf9f2d80fb68539c87d24b8df1386d48 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 196 4.9E-23 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 2.5E-168 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 Gene3D G3DSA:3.40.50.2000 252 457 8.0E-67 T 06-07-2017 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 47.547 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 Pfam PF00534 Glycosyl transferases group 1 286 446 6.5E-13 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 Pfam PF08323 Starch synthase catalytic domain 2 236 1.1E-73 T 06-07-2017 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS12885 385bcfbf4af5f4d748b6d037bb5ce592 480 SUPERFAMILY SSF53756 3 478 1.57E-115 T 06-07-2017 CDO28_RS32435 51dfb9664e92863b31b9501a81b9a7f7 226 SMART SM00382 32 221 7.4E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS32435 51dfb9664e92863b31b9501a81b9a7f7 226 Gene3D G3DSA:3.40.50.300 3 225 6.4E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32435 51dfb9664e92863b31b9501a81b9a7f7 226 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS32435 51dfb9664e92863b31b9501a81b9a7f7 226 SUPERFAMILY SSF52540 5 223 3.47E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32435 51dfb9664e92863b31b9501a81b9a7f7 226 Pfam PF00005 ABC transporter 24 172 9.9E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS25400 7aae702d45f5d5cd994f775a94764995 438 Pfam PF00202 Aminotransferase class-III 42 435 7.4E-73 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS25400 7aae702d45f5d5cd994f775a94764995 438 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 248 286 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS25400 7aae702d45f5d5cd994f775a94764995 438 SUPERFAMILY SSF53383 33 436 2.86E-102 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS25400 7aae702d45f5d5cd994f775a94764995 438 Gene3D G3DSA:3.90.1150.10 320 437 2.0E-35 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS25400 7aae702d45f5d5cd994f775a94764995 438 Gene3D G3DSA:3.40.640.10 74 319 5.7E-63 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS18710 1d91ef69fc2adb9be57fdb20437b2500 232 SUPERFAMILY SSF48371 8 206 2.26E-49 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 CDO28_RS18710 1d91ef69fc2adb9be57fdb20437b2500 232 Gene3D G3DSA:1.25.40.290 118 194 2.4E-10 T 06-07-2017 CDO28_RS18710 1d91ef69fc2adb9be57fdb20437b2500 232 Pfam PF08713 DNA alkylation repair enzyme 12 218 9.6E-34 T 06-07-2017 IPR014825 DNA alkylation repair enzyme CDO28_RS33125 975dcad1321e55bf6b138fd5e7c89f8f 112 Pfam PF10048 Predicted integral membrane protein (DUF2282) 47 95 2.4E-23 T 06-07-2017 IPR018740 Protein of unknown function DUF2282, integral membrane CDO28_RS24260 981c4eaeca9ace6937225360f5f285a2 295 SUPERFAMILY SSF51658 9 246 6.42E-57 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24260 981c4eaeca9ace6937225360f5f285a2 295 Pfam PF01261 Xylose isomerase-like TIM barrel 18 208 5.8E-37 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24260 981c4eaeca9ace6937225360f5f285a2 295 Gene3D G3DSA:3.20.20.150 1 272 1.6E-77 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS26705 e05d0a6034eb1e378ec440aec87e1544 285 Pfam PF02625 XdhC and CoxI family 12 69 4.8E-13 T 06-07-2017 IPR003777 XdhC- CoxI CDO28_RS26705 e05d0a6034eb1e378ec440aec87e1544 285 Gene3D G3DSA:3.40.50.720 116 220 9.1E-5 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26705 e05d0a6034eb1e378ec440aec87e1544 285 Pfam PF13478 XdhC Rossmann domain 119 261 3.7E-29 T 06-07-2017 IPR027051 XdhC Rossmann domain CDO28_RS26705 e05d0a6034eb1e378ec440aec87e1544 285 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 18 262 1.3E-99 T 06-07-2017 IPR014308 Xanthine dehydrogenase accessory protein XdhC CDO28_RS26705 e05d0a6034eb1e378ec440aec87e1544 285 SUPERFAMILY SSF51735 111 169 5.63E-5 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Gene3D G3DSA:3.30.9.10 114 172 7.2E-11 T 06-07-2017 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Gene3D G3DSA:3.30.9.10 252 340 7.2E-11 T 06-07-2017 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 SUPERFAMILY SSF51905 342 403 8.39E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 SUPERFAMILY SSF51905 31 252 8.39E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 2 406 4.1E-230 T 06-07-2017 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 SUPERFAMILY SSF54373 272 337 1.59E-5 T 06-07-2017 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Pfam PF01266 FAD dependent oxidoreductase 33 379 7.2E-59 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Gene3D G3DSA:3.50.50.60 173 251 3.4E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Gene3D G3DSA:3.50.50.60 19 110 3.4E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10175 823d40765c99dcad7ea72ae069cb1816 416 Gene3D G3DSA:3.50.50.60 342 400 3.4E-55 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 SMART SM00028 491 524 17.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 SMART SM00028 72 105 5.2 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 Gene3D G3DSA:1.25.40.10 453 546 7.8E-7 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 Gene3D G3DSA:1.25.40.10 397 418 3.1E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 Gene3D G3DSA:1.25.40.10 67 304 3.1E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 SUPERFAMILY SSF48452 217 287 2.19E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS32980 9f9e2cc79cb47a93cb36f6581de920db 567 SUPERFAMILY SSF48452 497 545 2.19E-9 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS12295 29f8c08e557089a2cb45e82ce4d28889 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 141 317 3.5E-22 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12295 29f8c08e557089a2cb45e82ce4d28889 323 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 117 212 5.2E-29 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS12295 29f8c08e557089a2cb45e82ce4d28889 323 SUPERFAMILY SSF161098 118 306 9.42E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12295 29f8c08e557089a2cb45e82ce4d28889 323 Gene3D G3DSA:1.10.3720.10 118 317 6.7E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 SUPERFAMILY SSF52540 257 501 4.87E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 Gene3D G3DSA:3.40.50.300 272 503 4.8E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 Pfam PF00005 ABC transporter 39 189 8.4E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 Pfam PF00005 ABC transporter 289 443 9.4E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 SMART SM00382 48 243 2.6E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 SMART SM00382 297 492 1.7E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 SUPERFAMILY SSF52540 22 247 2.24E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS29860 1d5ab92ad7c575b22a40361cd8461393 513 Gene3D G3DSA:3.40.50.300 20 254 1.0E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 223 4.9E-44 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 SUPERFAMILY SSF56176 1 223 4.47E-54 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 SMART SM01092 230 328 1.5E-31 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Gene3D G3DSA:3.30.390.50 228 328 4.8E-36 T 06-07-2017 CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Gene3D G3DSA:3.30.465.10 63 116 8.4E-35 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Gene3D G3DSA:3.30.465.10 161 223 8.4E-35 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 SUPERFAMILY SSF55447 229 328 1.96E-28 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 231 327 5.7E-18 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS23675 6f3552291d6194d34c1e978c4586768a 332 Gene3D G3DSA:3.30.43.10 1 55 1.6E-10 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS27855 3eaea15dc8772a2a2d521f4b3d532f24 210 Pfam PF06055 Exopolysaccharide synthesis, ExoD 34 204 4.7E-41 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD CDO28_RS27855 3eaea15dc8772a2a2d521f4b3d532f24 210 PIRSF PIRSF033239 15 210 8.4E-41 T 06-07-2017 IPR010331 Exopolysaccharide synthesis, ExoD CDO28_RS23895 2a48c897bb8f2afc6f844aca5494f02d 99 Pfam PF01361 Tautomerase enzyme 2 61 5.5E-12 T 06-07-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CDO28_RS23895 2a48c897bb8f2afc6f844aca5494f02d 99 SUPERFAMILY SSF55331 2 62 3.21E-14 T 06-07-2017 IPR014347 Tautomerase/MIF superfamily CDO28_RS23895 2a48c897bb8f2afc6f844aca5494f02d 99 Gene3D G3DSA:3.30.429.20 1 61 1.2E-17 T 06-07-2017 CDO28_RS25070 0f7f82a6618ee4ffc13195bae8828616 475 Pfam PF13520 Amino acid permease 8 415 2.0E-56 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS25070 0f7f82a6618ee4ffc13195bae8828616 475 PIRSF PIRSF006060 2 417 5.6E-40 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS25070 0f7f82a6618ee4ffc13195bae8828616 475 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 4 475 1.7E-155 T 06-07-2017 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 Pfam PF00005 ABC transporter 41 183 3.1E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 SUPERFAMILY SSF50331 258 382 1.56E-10 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 24 385 1.3E-167 T 06-07-2017 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 Gene3D G3DSA:3.40.50.300 24 255 1.9E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 SUPERFAMILY SSF52540 25 263 1.19E-86 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27640 06bbaddbbffd1ca0f63227249ce0a7d5 387 SMART SM00382 50 233 5.5E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 175 1.0E-56 T 06-07-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 SUPERFAMILY SSF52518 5 183 3.18E-55 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 SUPERFAMILY SSF52518 364 532 1.77E-41 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 322 6.3E-23 T 06-07-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 SUPERFAMILY SSF52467 160 348 1.03E-29 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 527 3.2E-29 T 06-07-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Gene3D G3DSA:3.40.50.970 374 532 7.7E-43 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Gene3D G3DSA:3.40.50.970 5 181 1.7E-61 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS07740 4a6456c9addafe251ec79382e22b08c5 537 Gene3D G3DSA:3.40.50.1220 187 373 2.0E-29 T 06-07-2017 IPR029035 DHS-like NAD/FAD-binding domain CDO28_RS25160 303ca88906f5c05d359a6a5c87e3ac98 138 Gene3D G3DSA:3.40.50.2300 19 134 1.3E-27 T 06-07-2017 CDO28_RS25160 303ca88906f5c05d359a6a5c87e3ac98 138 Pfam PF00072 Response regulator receiver domain 19 128 2.2E-23 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS25160 303ca88906f5c05d359a6a5c87e3ac98 138 SUPERFAMILY SSF52172 19 133 2.13E-28 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS25160 303ca88906f5c05d359a6a5c87e3ac98 138 SMART SM00448 17 128 6.5E-24 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS28765 039d2d0a1d9b9364351e8610ed14cd5f 345 SUPERFAMILY SSF53822 24 319 3.03E-71 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28765 039d2d0a1d9b9364351e8610ed14cd5f 345 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 332 1.1E-130 T 06-07-2017 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 CDO28_RS28765 039d2d0a1d9b9364351e8610ed14cd5f 345 Gene3D G3DSA:3.40.50.2300 142 320 8.1E-42 T 06-07-2017 CDO28_RS28765 039d2d0a1d9b9364351e8610ed14cd5f 345 Gene3D G3DSA:3.40.50.2300 25 141 2.3E-30 T 06-07-2017 CDO28_RS28765 039d2d0a1d9b9364351e8610ed14cd5f 345 Pfam PF13407 Periplasmic binding protein domain 28 284 1.6E-64 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS29105 64e163a866cc7d63f8acfb7490d035ea 240 SUPERFAMILY SSF52833 1 83 3.77E-17 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS29105 64e163a866cc7d63f8acfb7490d035ea 240 Gene3D G3DSA:3.40.30.10 1 102 7.7E-39 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS29105 64e163a866cc7d63f8acfb7490d035ea 240 SUPERFAMILY SSF47616 108 236 7.11E-23 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS29105 64e163a866cc7d63f8acfb7490d035ea 240 Pfam PF14497 Glutathione S-transferase, C-terminal domain 110 219 8.4E-30 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS29105 64e163a866cc7d63f8acfb7490d035ea 240 Gene3D G3DSA:1.20.1050.10 103 208 3.1E-53 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS07520 4d6e83cef48a726e90c28af6504e207a 84 Pfam PF04226 Transglycosylase associated protein 35 82 3.5E-12 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 CDO28_RS33645 b37039fea5d94f908004095a5bfafed7 212 Pfam PF13403 Hint domain 1 137 2.6E-40 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS33645 b37039fea5d94f908004095a5bfafed7 212 Gene3D G3DSA:2.170.16.10 2 144 1.1E-10 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS33645 b37039fea5d94f908004095a5bfafed7 212 SUPERFAMILY SSF51294 2 86 8.01E-12 T 06-07-2017 IPR028992 Hedgehog/Intein (Hint) domain CDO28_RS06815 8fd720e0a1921cfb748d4eb501ea7c16 446 Gene3D G3DSA:3.30.420.150 216 413 5.0E-55 T 06-07-2017 CDO28_RS06815 8fd720e0a1921cfb748d4eb501ea7c16 446 SUPERFAMILY SSF53067 93 215 2.85E-33 T 06-07-2017 CDO28_RS06815 8fd720e0a1921cfb748d4eb501ea7c16 446 Gene3D G3DSA:3.30.420.40 91 213 4.2E-44 T 06-07-2017 CDO28_RS06815 8fd720e0a1921cfb748d4eb501ea7c16 446 Pfam PF02541 Ppx/GppA phosphatase family 114 411 5.0E-43 T 06-07-2017 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CDO28_RS06815 8fd720e0a1921cfb748d4eb501ea7c16 446 SUPERFAMILY SSF53067 220 412 2.87E-39 T 06-07-2017 CDO28_RS30770 84da87b7d8d774a47d12b4cbb64bbf43 338 PIRSF PIRSF006470 2 333 8.9E-121 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS30770 84da87b7d8d774a47d12b4cbb64bbf43 338 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 37 291 4.5E-86 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS30770 84da87b7d8d774a47d12b4cbb64bbf43 338 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 317 4.1E-96 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 Pfam PF00672 HAMP domain 436 502 2.1E-12 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 591 785 9.8E-37 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 Gene3D G3DSA:3.30.450.20 251 417 9.0E-17 T 06-07-2017 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 SUPERFAMILY SSF158472 456 502 1.7E-6 T 06-07-2017 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 SMART SM00304 455 507 1.2E-10 T 06-07-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CDO28_RS32780 c64fcbf20f4173880c291ec39aaa43b9 786 SMART SM00331 565 785 4.6E-44 T 06-07-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 CDO28_RS26310 05bed5846042b8cb2c5f291de2723c8a 285 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 16 279 7.1E-125 T 06-07-2017 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 CDO28_RS26310 05bed5846042b8cb2c5f291de2723c8a 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 281 1.5E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26310 05bed5846042b8cb2c5f291de2723c8a 285 SUPERFAMILY SSF161098 22 272 2.24E-54 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26310 05bed5846042b8cb2c5f291de2723c8a 285 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 275 4.9E-94 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CDO28_RS26310 05bed5846042b8cb2c5f291de2723c8a 285 Gene3D G3DSA:1.10.3720.10 24 281 1.1E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08525 3b33eea3bf109e68c1da9625b693594f 167 Gene3D G3DSA:3.40.630.30 15 166 5.5E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08525 3b33eea3bf109e68c1da9625b693594f 167 SUPERFAMILY SSF55729 14 166 3.43E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS08525 3b33eea3bf109e68c1da9625b693594f 167 Pfam PF00583 Acetyltransferase (GNAT) family 72 140 4.7E-16 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS29265 a2d4f48ee01a5a56745d97ca54c71444 86 Pfam PF06169 Protein of unknown function (DUF982) 11 80 2.9E-22 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 117 7.6E-14 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 154 175 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 2.5E-37 T 06-07-2017 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 Pfam PF13244 Domain of unknown function (DUF4040) 612 674 1.1E-16 T 06-07-2017 IPR025383 Domain of unknown function DUF4040 CDO28_RS05575 c83b98ee26c310a0f31b6842910de431 791 Pfam PF00361 Proton-conducting membrane transporter 130 413 9.9E-66 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS29965 ae1e161c144959a2af2f614566cd2a6d 354 Pfam PF00535 Glycosyl transferase family 2 11 117 3.0E-29 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS29965 ae1e161c144959a2af2f614566cd2a6d 354 Gene3D G3DSA:3.90.550.10 10 187 3.3E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS29965 ae1e161c144959a2af2f614566cd2a6d 354 SUPERFAMILY SSF53448 10 219 2.64E-43 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 PIRSF PIRSF036427 5 245 3.9E-72 T 06-07-2017 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 Gene3D G3DSA:3.40.1010.10 6 138 2.7E-34 T 06-07-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 105 137 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 220 4.3E-49 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 12 26 - T 06-07-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 7 239 1.6E-75 T 06-07-2017 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 CDO28_RS12495 584dc98f42c6be54bc8425b420a39bdc 251 SUPERFAMILY SSF53790 4 243 2.5E-47 T 06-07-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CDO28_RS14055 cb1168f2b177929c16ef6a24b8462d82 142 PIRSF PIRSF032131 1 142 1.1E-70 T 06-07-2017 IPR009562 Protein of unknown function DUF1178 CDO28_RS14055 cb1168f2b177929c16ef6a24b8462d82 142 Pfam PF06676 Protein of unknown function (DUF1178) 1 138 5.1E-52 T 06-07-2017 IPR009562 Protein of unknown function DUF1178 CDO28_RS15210 e134d11d7e0b1445c31570e8f6005fee 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 269 2.1E-25 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15210 e134d11d7e0b1445c31570e8f6005fee 281 Gene3D G3DSA:1.10.3720.10 86 272 1.4E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15210 e134d11d7e0b1445c31570e8f6005fee 281 SUPERFAMILY SSF161098 87 273 1.02E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15210 e134d11d7e0b1445c31570e8f6005fee 281 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 7 272 9.2E-135 T 06-07-2017 IPR017784 ABC transporter, choline, permease protein CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 SUPERFAMILY SSF53383 8 430 2.96E-187 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 13 429 53.351 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 228 244 - T 06-07-2017 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 Gene3D G3DSA:3.40.640.10 43 289 7.5E-111 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 Pfam PF00464 Serine hydroxymethyltransferase 14 391 3.3E-182 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 PIRSF PIRSF000412 3 431 1.1E-172 T 06-07-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDO28_RS04450 97fbde502e3353e7fa3586cf95ed5ce6 431 Gene3D G3DSA:3.90.1150.10 290 430 7.0E-57 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS06685 f19d1a4545447e541fc91d08133e095d 246 Gene3D G3DSA:2.40.440.10 108 245 1.7E-38 T 06-07-2017 CDO28_RS06685 f19d1a4545447e541fc91d08133e095d 246 Pfam PF03734 L,D-transpeptidase catalytic domain 114 245 2.2E-20 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS06685 f19d1a4545447e541fc91d08133e095d 246 SUPERFAMILY SSF141523 108 160 1.22E-35 T 06-07-2017 CDO28_RS06685 f19d1a4545447e541fc91d08133e095d 246 SUPERFAMILY SSF141523 188 246 1.22E-35 T 06-07-2017 CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 83 254 6.6E-35 T 06-07-2017 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 Gene3D G3DSA:3.40.50.1000 142 284 8.9E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 75 285 3.4E-65 T 06-07-2017 CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 Gene3D G3DSA:1.10.150.210 92 141 1.8E-24 T 06-07-2017 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 SUPERFAMILY SSF56784 81 289 1.87E-45 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS16700 8cd5a4c39c9a593512b0ae613ddba150 295 Pfam PF12710 haloacid dehalogenase-like hydrolase 85 252 1.1E-17 T 06-07-2017 CDO28_RS20605 ea0dea28f232be5a33f805dc731b886a 314 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 281 8.2E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 Gene3D G3DSA:3.40.50.2300 2 117 2.2E-11 T 06-07-2017 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 7.6E-16 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 SUPERFAMILY SSF52172 2 123 1.57E-13 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 Pfam PF00072 Response regulator receiver domain 2 112 3.3E-5 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 SUPERFAMILY SSF46894 124 221 9.92E-18 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 SMART SM00862 144 220 1.5E-16 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS07245 46dd275e12210bf59550aa6cd1b07541 223 Gene3D G3DSA:1.10.10.10 126 220 3.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31145 6aa7a48bbd8a6bfa2ddf65bec2791289 307 Gene3D G3DSA:1.10.3720.10 90 301 5.8E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31145 6aa7a48bbd8a6bfa2ddf65bec2791289 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 9.5E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31145 6aa7a48bbd8a6bfa2ddf65bec2791289 307 SUPERFAMILY SSF161098 91 291 1.26E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26810 d53132a999c82d5917986e7ee53214d5 245 SUPERFAMILY SSF161098 45 227 4.97E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26810 d53132a999c82d5917986e7ee53214d5 245 Gene3D G3DSA:1.10.3720.10 10 239 1.8E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26810 d53132a999c82d5917986e7ee53214d5 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 228 3.2E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02335 f73d9202355bedeca52698bab00c889d 270 SUPERFAMILY SSF53448 6 137 3.94E-22 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS02335 f73d9202355bedeca52698bab00c889d 270 Pfam PF00535 Glycosyl transferase family 2 8 121 1.6E-18 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS02335 f73d9202355bedeca52698bab00c889d 270 Gene3D G3DSA:3.90.550.10 7 106 2.1E-15 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS03300 b64454594b0449471485ba2a06513c84 321 Pfam PF01734 Patatin-like phospholipase 42 199 9.2E-24 T 06-07-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 CDO28_RS03300 b64454594b0449471485ba2a06513c84 321 SUPERFAMILY SSF52151 37 303 7.59E-55 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS03300 b64454594b0449471485ba2a06513c84 321 Gene3D G3DSA:3.40.1090.10 41 203 1.6E-10 T 06-07-2017 CDO28_RS05660 4ece4708115cbadffd467a93e6887923 237 Pfam PF13280 WYL domain 138 228 3.8E-16 T 06-07-2017 IPR026881 WYL domain CDO28_RS05660 4ece4708115cbadffd467a93e6887923 237 Gene3D G3DSA:1.10.10.10 1 63 1.8E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05660 4ece4708115cbadffd467a93e6887923 237 Pfam PF08279 HTH domain 6 60 2.0E-18 T 06-07-2017 IPR013196 Helix-turn-helix, type 11 CDO28_RS05660 4ece4708115cbadffd467a93e6887923 237 SUPERFAMILY SSF46785 1 62 9.34E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19455 f0ca1c44e384758940a8c496955d6860 257 PIRSF PIRSF015736 19 257 6.7E-79 T 06-07-2017 IPR026286 Maleate isomerase/Arylmalonate decarboxylase CDO28_RS19455 f0ca1c44e384758940a8c496955d6860 257 Pfam PF01177 Asp/Glu/Hydantoin racemase 76 238 1.6E-8 T 06-07-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDO28_RS23030 5f0864c3c42fd21df4906ee8114ca59c 46 Pfam PF05082 Rop-like 2 43 7.2E-16 T 06-07-2017 IPR007774 Putative nitrogen fixation protein CDO28_RS23030 5f0864c3c42fd21df4906ee8114ca59c 46 PIRSF PIRSF037676 1 46 4.4E-19 T 06-07-2017 IPR007774 Putative nitrogen fixation protein CDO28_RS23030 5f0864c3c42fd21df4906ee8114ca59c 46 Gene3D G3DSA:1.10.287.660 2 44 4.7E-17 T 06-07-2017 IPR029012 Helix hairpin bin domain CDO28_RS26175 241fda4402e08e9cf91a8429b9005214 288 SUPERFAMILY SSF161098 10 288 7.98E-75 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26175 241fda4402e08e9cf91a8429b9005214 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 281 5.1E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26175 241fda4402e08e9cf91a8429b9005214 288 Gene3D G3DSA:1.10.3720.10 7 275 3.6E-70 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23695 91f65384b3a757985d1196489e319b30 340 Gene3D G3DSA:2.120.10.30 55 317 6.3E-46 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS23695 91f65384b3a757985d1196489e319b30 340 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 67 288 1.2E-29 T 06-07-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region CDO28_RS23695 91f65384b3a757985d1196489e319b30 340 SUPERFAMILY SSF63829 37 317 2.09E-54 T 06-07-2017 CDO28_RS21195 8b9ea25a8df5b7b9df79ed7c13d8473f 106 Pfam PF08734 GYD domain 2 91 4.8E-25 T 06-07-2017 IPR014845 Uncharacterised protein GYD CDO28_RS15295 86917d6f6ee1b1a5b75e1732363c5fa9 161 Pfam PF00583 Acetyltransferase (GNAT) family 58 132 4.5E-14 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS15295 86917d6f6ee1b1a5b75e1732363c5fa9 161 Gene3D G3DSA:3.40.630.30 2 157 7.5E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15295 86917d6f6ee1b1a5b75e1732363c5fa9 161 SUPERFAMILY SSF55729 1 136 3.71E-24 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS28620 7ee027af772a504e82778089069fd139 167 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 3 160 2.5E-69 T 06-07-2017 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS28620 7ee027af772a504e82778089069fd139 167 Pfam PF09349 OHCU decarboxylase 3 158 3.2E-43 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS28620 7ee027af772a504e82778089069fd139 167 SUPERFAMILY SSF158694 4 162 2.88E-52 T 06-07-2017 CDO28_RS28620 7ee027af772a504e82778089069fd139 167 Gene3D G3DSA:1.10.3330.10 4 162 4.9E-59 T 06-07-2017 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394 CDO28_RS22140 078812e32168dd9fa44a433faebf350c 339 Pfam PF00872 Transposase, Mutator family 1 318 5.3E-143 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS22140 078812e32168dd9fa44a433faebf350c 339 ProSitePatterns PS01007 Transposases, Mutator family, signature. 171 195 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 Gene3D G3DSA:3.50.50.60 33 118 7.2E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 Gene3D G3DSA:3.50.50.60 182 262 7.2E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 Gene3D G3DSA:3.50.50.60 355 403 7.2E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 394 8.1E-6 T 06-07-2017 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 62 8.1E-6 T 06-07-2017 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 SUPERFAMILY SSF51905 355 423 1.49E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 SUPERFAMILY SSF51905 39 263 1.49E-48 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14650 3a6a31d0edabb1fc16ce5f8a0c7761bd 437 Pfam PF01266 FAD dependent oxidoreductase 40 391 1.9E-60 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 Pfam PF03734 L,D-transpeptidase catalytic domain 399 561 3.0E-28 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 SUPERFAMILY SSF141523 397 453 3.14E-17 T 06-07-2017 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 SUPERFAMILY SSF141523 503 552 3.14E-17 T 06-07-2017 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 Gene3D G3DSA:2.40.440.10 505 552 1.4E-8 T 06-07-2017 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 Gene3D G3DSA:2.40.440.10 398 444 1.4E-8 T 06-07-2017 CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 SUPERFAMILY SSF47090 336 370 1.41E-5 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS18810 4bdb524acd8272e7618f0217892bf184 631 Gene3D G3DSA:1.10.101.10 336 370 5.1E-8 T 06-07-2017 IPR002477 Peptidoglycan binding-like CDO28_RS04335 0e3e3b75cc18dc7fbe5ea6022f4a2fb2 414 Gene3D G3DSA:3.40.50.2000 192 359 1.5E-30 T 06-07-2017 CDO28_RS04335 0e3e3b75cc18dc7fbe5ea6022f4a2fb2 414 Pfam PF13439 Glycosyltransferase Family 4 23 190 8.4E-20 T 06-07-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDO28_RS04335 0e3e3b75cc18dc7fbe5ea6022f4a2fb2 414 Pfam PF00534 Glycosyl transferases group 1 199 345 5.2E-23 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS04335 0e3e3b75cc18dc7fbe5ea6022f4a2fb2 414 SUPERFAMILY SSF53756 22 381 7.85E-69 T 06-07-2017 CDO28_RS24210 937582586cd1fdf610e799bbfbb4103d 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 35 78 2.8E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS24210 937582586cd1fdf610e799bbfbb4103d 221 Gene3D G3DSA:1.10.10.60 24 59 4.8E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS24210 937582586cd1fdf610e799bbfbb4103d 221 Gene3D G3DSA:1.10.357.10 60 209 3.0E-9 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS24210 937582586cd1fdf610e799bbfbb4103d 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 45 75 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS24210 937582586cd1fdf610e799bbfbb4103d 221 SUPERFAMILY SSF46689 25 98 3.99E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 Gene3D G3DSA:1.10.260.40 9 63 1.8E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 Pfam PF01381 Helix-turn-helix 13 63 4.0E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 Pfam PF00717 Peptidase S24-like 178 227 2.4E-8 T 06-07-2017 IPR019759 Peptidase S24/S26A/S26B CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 SMART SM00530 11 74 0.0012 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 Gene3D G3DSA:2.10.109.10 163 263 4.6E-14 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS01310 e9f62c1ecbf3ce8a459403bb09a5b09f 266 SUPERFAMILY SSF51306 139 263 1.29E-16 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS06855 e644ce3509eab337c8063d526117fe4a 214 SUPERFAMILY SSF63829 17 209 2.29E-26 T 06-07-2017 CDO28_RS06855 e644ce3509eab337c8063d526117fe4a 214 Gene3D G3DSA:2.130.10.10 15 208 2.8E-20 T 06-07-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CDO28_RS06855 e644ce3509eab337c8063d526117fe4a 214 Pfam PF13360 PQQ-like domain 73 207 3.5E-7 T 06-07-2017 IPR002372 Pyrrolo-quinoline quinone repeat CDO28_RS05580 36642e7c1592977f72505e9527379dc9 135 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 11 132 3.9E-56 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS05580 36642e7c1592977f72505e9527379dc9 135 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 12 135 38.888 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS05580 36642e7c1592977f72505e9527379dc9 135 Gene3D G3DSA:2.170.150.20 7 134 2.1E-61 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS05580 36642e7c1592977f72505e9527379dc9 135 Pfam PF01641 SelR domain 15 133 1.3E-53 T 06-07-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDO28_RS05580 36642e7c1592977f72505e9527379dc9 135 SUPERFAMILY SSF51316 10 134 1.41E-59 T 06-07-2017 IPR011057 Mss4-like CDO28_RS16445 4ae542e1e48ec5e0a3397bd0de3f34d0 288 Pfam PF13525 Outer membrane lipoprotein 48 243 5.5E-54 T 06-07-2017 CDO28_RS16445 4ae542e1e48ec5e0a3397bd0de3f34d0 288 SUPERFAMILY SSF48452 45 183 1.69E-10 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS16445 4ae542e1e48ec5e0a3397bd0de3f34d0 288 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 15 250 35.142 T 06-07-2017 IPR017689 Outer membrane protein assembly factor BamD CDO28_RS16445 4ae542e1e48ec5e0a3397bd0de3f34d0 288 Gene3D G3DSA:1.25.40.10 46 242 2.5E-12 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS16445 4ae542e1e48ec5e0a3397bd0de3f34d0 288 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 18 256 1.3E-84 T 06-07-2017 IPR017689 Outer membrane protein assembly factor BamD CDO28_RS18765 83afacb2a27c9a65c552535efa2af6d2 174 Gene3D G3DSA:3.40.50.300 7 168 4.6E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18765 83afacb2a27c9a65c552535efa2af6d2 174 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 10 168 1.2E-55 T 06-07-2017 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CDO28_RS18765 83afacb2a27c9a65c552535efa2af6d2 174 SUPERFAMILY SSF52540 7 168 1.77E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18765 83afacb2a27c9a65c552535efa2af6d2 174 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 10 143 2.3E-49 T 06-07-2017 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CDO28_RS23385 6c8ededa17ab921c63a7d895f8ad9c9f 127 Pfam PF00072 Response regulator receiver domain 8 118 4.3E-21 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23385 6c8ededa17ab921c63a7d895f8ad9c9f 127 SMART SM00448 6 117 5.5E-22 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS23385 6c8ededa17ab921c63a7d895f8ad9c9f 127 Gene3D G3DSA:3.40.50.2300 4 124 4.6E-28 T 06-07-2017 CDO28_RS23385 6c8ededa17ab921c63a7d895f8ad9c9f 127 SUPERFAMILY SSF52172 4 122 2.13E-29 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS13010 ad6a24fb7f0c142c41f9c9487e34db26 153 Gene3D G3DSA:2.60.40.790 3 139 4.3E-22 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS13010 ad6a24fb7f0c142c41f9c9487e34db26 153 Pfam PF00011 Hsp20/alpha crystallin family 44 138 1.3E-20 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain CDO28_RS13010 ad6a24fb7f0c142c41f9c9487e34db26 153 SUPERFAMILY SSF49764 5 138 2.09E-24 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS30875 399c24bbb7b3e4b102a0ed2c769178bf 266 SMART SM00382 27 212 6.5E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS30875 399c24bbb7b3e4b102a0ed2c769178bf 266 Pfam PF00005 ABC transporter 18 167 7.5E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS30875 399c24bbb7b3e4b102a0ed2c769178bf 266 Gene3D G3DSA:3.40.50.300 6 239 2.2E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30875 399c24bbb7b3e4b102a0ed2c769178bf 266 SUPERFAMILY SSF52540 3 228 3.26E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 SUPERFAMILY SSF52833 14 107 1.14E-11 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 84 4.2E-10 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 Gene3D G3DSA:3.40.30.10 14 101 3.1E-12 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 Gene3D G3DSA:1.20.1050.10 102 216 3.2E-7 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 Pfam PF13410 Glutathione S-transferase, C-terminal domain 153 214 1.2E-8 T 06-07-2017 CDO28_RS04680 efdf5a6e43cb9066dd611f0779ccdf52 229 SUPERFAMILY SSF47616 93 217 3.62E-10 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS18740 5ca198c6addba7f2a20d2a4c07d9c9d1 276 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 60 166 5.2E-22 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS18740 5ca198c6addba7f2a20d2a4c07d9c9d1 276 SUPERFAMILY SSF161098 60 257 8.76E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18740 5ca198c6addba7f2a20d2a4c07d9c9d1 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 270 4.1E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS18740 5ca198c6addba7f2a20d2a4c07d9c9d1 276 Gene3D G3DSA:1.10.3720.10 59 271 4.3E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17430 cf69c3210ba4f4f7f8ca2d735d35b369 363 Pfam PF02219 Methylenetetrahydrofolate reductase 26 317 1.9E-34 T 06-07-2017 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDO28_RS17430 cf69c3210ba4f4f7f8ca2d735d35b369 363 SUPERFAMILY SSF51730 25 318 6.47E-69 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS17430 cf69c3210ba4f4f7f8ca2d735d35b369 363 Gene3D G3DSA:3.20.20.220 23 321 4.4E-55 T 06-07-2017 IPR029041 FAD-linked oxidoreductase-like CDO28_RS12675 9ca2760ef34d7f7a9c4bd79b3f7ca4c0 300 SMART SM00880 15 278 1.1E-18 T 06-07-2017 IPR007899 CHAD domain CDO28_RS12675 9ca2760ef34d7f7a9c4bd79b3f7ca4c0 300 Pfam PF05235 CHAD domain 37 242 4.2E-24 T 06-07-2017 IPR007899 CHAD domain CDO28_RS24985 55ce7361d2f9b05f1bd146cd982bd6fd 325 Pfam PF13460 NAD(P)H-binding 37 216 4.8E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24985 55ce7361d2f9b05f1bd146cd982bd6fd 325 SUPERFAMILY SSF51735 30 291 6.27E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24985 55ce7361d2f9b05f1bd146cd982bd6fd 325 Gene3D G3DSA:3.40.50.720 30 252 5.2E-42 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30975 1a833e2b8d6443c78570cb0a58806630 554 Pfam PF07730 Histidine kinase 361 423 1.6E-12 T 06-07-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CDO28_RS30975 1a833e2b8d6443c78570cb0a58806630 554 SUPERFAMILY SSF55874 426 546 3.41E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30975 1a833e2b8d6443c78570cb0a58806630 554 Gene3D G3DSA:3.30.565.10 465 545 3.3E-7 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS30975 1a833e2b8d6443c78570cb0a58806630 554 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 468 514 5.6E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS17495 d49409470fb20b74310df118c6adf953 212 Pfam PF08348 YheO-like PAS domain 15 116 1.0E-20 T 06-07-2017 IPR013559 YheO-like CDO28_RS17495 d49409470fb20b74310df118c6adf953 212 Pfam PF13309 HTH domain 143 203 8.6E-16 T 06-07-2017 CDO28_RS17495 d49409470fb20b74310df118c6adf953 212 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 120 2.0E-46 T 06-07-2017 IPR013559 YheO-like CDO28_RS17155 5020195035d68e1066157fdac25d8a9e 354 PIRSF PIRSF018266 35 354 7.4E-90 T 06-07-2017 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component CDO28_RS17155 5020195035d68e1066157fdac25d8a9e 354 Pfam PF16220 Domain of unknown function (DUF4880) 47 88 4.2E-9 T 06-07-2017 IPR032623 FecR, N-terminal CDO28_RS17155 5020195035d68e1066157fdac25d8a9e 354 Pfam PF04773 FecR protein 144 235 9.9E-23 T 06-07-2017 IPR006860 FecR protein CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 321 2.4E-28 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 SUPERFAMILY SSF52540 35 256 5.22E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 SMART SM00382 51 235 9.7E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 Gene3D G3DSA:3.40.50.300 9 271 5.8E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 Pfam PF00005 ABC transporter 43 186 5.0E-26 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14175 683b3a5bf76d044c101b92dc6e13bb13 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 301 2.2E-20 T 06-07-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDO28_RS09375 eb1ee8f15eb23cafdf7a34b5d4ad55ac 572 SMART SM00911 376 458 2.1E-30 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS09375 eb1ee8f15eb23cafdf7a34b5d4ad55ac 572 Pfam PF07536 HWE histidine kinase 376 457 5.6E-24 T 06-07-2017 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 CDO28_RS09375 eb1ee8f15eb23cafdf7a34b5d4ad55ac 572 Gene3D G3DSA:3.30.565.10 435 529 6.0E-5 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS09375 eb1ee8f15eb23cafdf7a34b5d4ad55ac 572 SUPERFAMILY SSF55874 437 560 1.55E-6 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS33240 6a95bec2764aa4b084c75958e7468c26 100 Pfam PF06169 Protein of unknown function (DUF982) 8 79 3.8E-18 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS00015 0590dd4f757ea9549dcb018b8d3c786e 639 Pfam PF00884 Sulfatase 269 561 1.3E-45 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS00015 0590dd4f757ea9549dcb018b8d3c786e 639 SUPERFAMILY SSF53649 322 616 2.88E-21 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS00015 0590dd4f757ea9549dcb018b8d3c786e 639 Gene3D G3DSA:3.40.720.10 333 542 5.1E-16 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS17095 bf2cd3c8c2237566f953d60147e6df65 368 Gene3D G3DSA:3.60.10.10 2 367 2.2E-19 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS17095 bf2cd3c8c2237566f953d60147e6df65 368 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 58 359 1.5E-15 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS17095 bf2cd3c8c2237566f953d60147e6df65 368 SUPERFAMILY SSF56219 67 312 6.96E-32 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS17095 bf2cd3c8c2237566f953d60147e6df65 368 SUPERFAMILY SSF56219 1 26 6.96E-32 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS17095 bf2cd3c8c2237566f953d60147e6df65 368 SUPERFAMILY SSF56219 339 368 6.96E-32 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS04515 3af4a81dc7dd091d527fe457ebc28751 126 SMART SM00450 19 122 1.9E-18 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS04515 3af4a81dc7dd091d527fe457ebc28751 126 Pfam PF00581 Rhodanese-like domain 20 115 1.2E-15 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS04515 3af4a81dc7dd091d527fe457ebc28751 126 Gene3D G3DSA:3.40.250.10 5 122 6.2E-29 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS04515 3af4a81dc7dd091d527fe457ebc28751 126 SUPERFAMILY SSF52821 8 125 4.58E-26 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS09475 3b6451e41a206a8acebdf2d7b0ed6c9d 250 Pfam PF02348 Cytidylyltransferase 11 221 1.7E-38 T 06-07-2017 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 CDO28_RS09475 3b6451e41a206a8acebdf2d7b0ed6c9d 250 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 7 247 34.434 T 06-07-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CDO28_RS09475 3b6451e41a206a8acebdf2d7b0ed6c9d 250 SUPERFAMILY SSF53448 8 248 3.6E-52 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS09475 3b6451e41a206a8acebdf2d7b0ed6c9d 250 Gene3D G3DSA:3.90.550.10 8 248 4.9E-69 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS09475 3b6451e41a206a8acebdf2d7b0ed6c9d 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 10 240 8.7E-64 T 06-07-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CDO28_RS26245 889897b3228381ac09c624efe85620b8 178 Pfam PF01202 Shikimate kinase 25 172 5.7E-12 T 06-07-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CDO28_RS26245 889897b3228381ac09c624efe85620b8 178 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 19 172 7.3E-57 T 06-07-2017 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 CDO28_RS26245 889897b3228381ac09c624efe85620b8 178 SUPERFAMILY SSF52540 18 172 3.06E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26245 889897b3228381ac09c624efe85620b8 178 Gene3D G3DSA:3.40.50.300 18 175 1.4E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 SUPERFAMILY SSF52540 246 496 1.04E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 SUPERFAMILY SSF52540 4 226 4.05E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 Gene3D G3DSA:3.40.50.300 254 502 5.5E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 Pfam PF00005 ABC transporter 280 436 6.0E-18 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 Pfam PF00005 ABC transporter 21 172 1.7E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 Gene3D G3DSA:3.40.50.300 3 227 8.9E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 SMART SM00382 30 220 1.5E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28720 4bb3125e22a5b3c34add27a9b83db70d 511 SMART SM00382 289 485 0.12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 317 1.8E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 425 600 2.4E-8 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 SUPERFAMILY SSF161098 40 317 2.06E-43 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 Gene3D G3DSA:1.10.3720.10 333 604 1.4E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 Gene3D G3DSA:1.10.3720.10 40 310 8.5E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31380 902faadc291ad5bb5c2bdbb30d6db0cb 616 SUPERFAMILY SSF161098 338 611 2.99E-32 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 Gene3D G3DSA:1.10.260.40 2 53 2.4E-24 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 Pfam PF13377 Periplasmic binding protein-like domain 172 326 8.3E-24 T 06-07-2017 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 Gene3D G3DSA:3.40.50.2300 174 314 3.2E-33 T 06-07-2017 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 SUPERFAMILY SSF47413 1 60 1.69E-18 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.0E-17 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 SMART SM00354 1 71 1.8E-30 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 Gene3D G3DSA:3.40.50.2300 54 173 6.5E-38 T 06-07-2017 CDO28_RS31725 ab43a4cc9ecb41386ac00dff6373025a 334 SUPERFAMILY SSF53822 58 317 6.89E-53 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS22695 6b1d030b1514c5a785d6f7e8dc3259c1 101 Pfam PF01527 Transposase 36 76 7.4E-8 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS22695 6b1d030b1514c5a785d6f7e8dc3259c1 101 Gene3D G3DSA:1.10.10.60 15 76 1.8E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22695 6b1d030b1514c5a785d6f7e8dc3259c1 101 SUPERFAMILY SSF46689 30 74 5.73E-5 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS16870 a22120a999b60166c89b9ad94a8ecf9f 140 Pfam PF06170 Protein of unknown function (DUF983) 29 113 5.2E-32 T 06-07-2017 IPR009325 Protein of unknown function DUF983 CDO28_RS12855 31c2e253457d76867dd6177dad09d21b 184 Pfam PF04268 Sarcosine oxidase, gamma subunit family 41 181 6.9E-43 T 06-07-2017 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12855 31c2e253457d76867dd6177dad09d21b 184 TIGRFAM TIGR01375 soxG: sarcosine oxidase, gamma subunit family 36 181 7.7E-59 T 06-07-2017 IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 CDO28_RS12855 31c2e253457d76867dd6177dad09d21b 184 SUPERFAMILY SSF103025 67 183 3.53E-11 T 06-07-2017 CDO28_RS18550 249862e88698cee2c9a46a6a4dbb4fac 170 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 2 68 1.9E-19 T 06-07-2017 IPR025159 Transcriptional regulator, AbiEi antitoxin CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 12 284 4.3E-45 T 06-07-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 9.4E-17 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 225 233 9.4E-17 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 9.4E-17 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 9.4E-17 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 219 9.4E-17 T 06-07-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 SUPERFAMILY SSF52374 10 294 6.7E-82 T 06-07-2017 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 Gene3D G3DSA:3.40.50.620 10 73 2.9E-43 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 Gene3D G3DSA:3.40.50.620 211 260 2.9E-43 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13945 1361edddeed48edf32dd415461cfec74 298 Gene3D G3DSA:3.90.800.10 74 206 4.9E-18 T 06-07-2017 CDO28_RS03245 df83d50a92731d2f94ca92e3c561c723 200 SMART SM00903 21 172 4.2E-13 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS03245 df83d50a92731d2f94ca92e3c561c723 200 Gene3D G3DSA:2.30.110.10 2 195 1.4E-60 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS03245 df83d50a92731d2f94ca92e3c561c723 200 Pfam PF01613 Flavin reductase like domain 23 166 1.9E-18 T 06-07-2017 IPR002563 Flavin reductase like domain GO:0010181 CDO28_RS03245 df83d50a92731d2f94ca92e3c561c723 200 SUPERFAMILY SSF50475 8 195 1.09E-47 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Gene3D G3DSA:3.30.420.40 190 220 7.3E-15 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Gene3D G3DSA:3.30.420.40 357 400 7.3E-15 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 SUPERFAMILY SSF53067 4 177 4.49E-21 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Pfam PF00012 Hsp70 protein 306 415 1.4E-9 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Pfam PF00012 Hsp70 protein 96 234 4.9E-8 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.0E-4 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 PRINTS PR00301 70kDa heat shock protein signature 372 388 1.0E-4 T 06-07-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Gene3D G3DSA:3.30.420.40 4 74 1.2E-21 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 Gene3D G3DSA:3.30.420.40 107 189 1.2E-21 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 375 389 - T 06-07-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 SUPERFAMILY SSF53067 180 245 1.76E-32 T 06-07-2017 CDO28_RS05360 280fc1c8bdf664981b6de0ef22d35576 429 SUPERFAMILY SSF53067 297 418 1.76E-32 T 06-07-2017 CDO28_RS20415 5b982c85050886531af82ab06459616d 215 Pfam PF14497 Glutathione S-transferase, C-terminal domain 123 197 7.3E-5 T 06-07-2017 IPR004046 Glutathione S-transferase, C-terminal CDO28_RS20415 5b982c85050886531af82ab06459616d 215 Gene3D G3DSA:3.40.30.10 21 94 1.6E-19 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS20415 5b982c85050886531af82ab06459616d 215 SUPERFAMILY SSF52833 21 83 2.33E-15 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS20415 5b982c85050886531af82ab06459616d 215 Pfam PF02798 Glutathione S-transferase, N-terminal domain 19 81 5.3E-12 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS20415 5b982c85050886531af82ab06459616d 215 SUPERFAMILY SSF47616 83 202 5.57E-21 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS20415 5b982c85050886531af82ab06459616d 215 Gene3D G3DSA:1.20.1050.10 95 202 2.9E-15 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS16880 edb8aec7208fb9d015e54ca2a37ba864 134 Gene3D G3DSA:1.10.10.10 22 132 1.5E-43 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16880 edb8aec7208fb9d015e54ca2a37ba864 134 SUPERFAMILY SSF46785 20 131 3.42E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS16880 edb8aec7208fb9d015e54ca2a37ba864 134 Pfam PF01638 HxlR-like helix-turn-helix 35 121 5.7E-29 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS15755 50d8028b61c760d490427694783be64a 174 Pfam PF00583 Acetyltransferase (GNAT) family 65 139 7.2E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS15755 50d8028b61c760d490427694783be64a 174 Gene3D G3DSA:3.40.630.30 5 170 1.8E-32 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS15755 50d8028b61c760d490427694783be64a 174 SUPERFAMILY SSF55729 2 165 1.22E-30 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS33305 96ef97da148f5e894ce9673fefa23fbb 73 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 06-07-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CDO28_RS33305 96ef97da148f5e894ce9673fefa23fbb 73 SUPERFAMILY SSF55008 2 64 2.75E-16 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS33305 96ef97da148f5e894ce9673fefa23fbb 73 Pfam PF00403 Heavy-metal-associated domain 4 60 5.0E-11 T 06-07-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDO28_RS33305 96ef97da148f5e894ce9673fefa23fbb 73 Gene3D G3DSA:3.30.70.100 2 63 1.3E-20 T 06-07-2017 CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 Gene3D G3DSA:3.10.105.10 272 469 2.3E-30 T 06-07-2017 CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 SUPERFAMILY SSF53850 25 481 2.17E-89 T 06-07-2017 CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 390 3.0E-62 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 Gene3D G3DSA:3.40.190.10 182 271 1.6E-22 T 06-07-2017 CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 Gene3D G3DSA:3.90.76.10 37 181 1.6E-31 T 06-07-2017 CDO28_RS31140 eaf5a6cb9657fe6df0c626bb3b045ed0 502 PIRSF PIRSF002741 19 494 1.1E-57 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS18415 6f3cb5db655705289777e317f54ef6a7 254 SUPERFAMILY SSF88713 3 251 6.45E-95 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS18415 6f3cb5db655705289777e317f54ef6a7 254 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 43.838 T 06-07-2017 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF CDO28_RS18415 6f3cb5db655705289777e317f54ef6a7 254 Pfam PF03746 LamB/YcsF family 4 241 2.5E-96 T 06-07-2017 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF CDO28_RS21075 2443618a046d367956eb230a71a1f7e0 104 Pfam PF13670 Peptidase propeptide and YPEB domain 17 98 8.3E-6 T 06-07-2017 IPR025711 PepSY domain CDO28_RS14860 cfc7e75de7a281c2c952139807802828 105 Pfam PF01381 Helix-turn-helix 50 93 3.1E-6 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS14860 cfc7e75de7a281c2c952139807802828 105 Gene3D G3DSA:1.10.260.40 48 100 3.4E-16 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS14860 cfc7e75de7a281c2c952139807802828 105 SUPERFAMILY SSF47413 48 98 3.69E-10 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS14860 cfc7e75de7a281c2c952139807802828 105 SMART SM00530 49 104 0.0013 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS19590 fa0804aa351e29340685cd45088557ea 264 SUPERFAMILY SSF69118 39 263 7.2E-51 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS19590 fa0804aa351e29340685cd45088557ea 264 Gene3D G3DSA:1.20.1290.10 167 262 3.4E-19 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS19590 fa0804aa351e29340685cd45088557ea 264 Gene3D G3DSA:1.20.1290.10 32 141 7.2E-17 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS19590 fa0804aa351e29340685cd45088557ea 264 Pfam PF02627 Carboxymuconolactone decarboxylase family 173 251 1.5E-18 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS19590 fa0804aa351e29340685cd45088557ea 264 Pfam PF02627 Carboxymuconolactone decarboxylase family 59 129 4.5E-14 T 06-07-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDO28_RS07880 0583616b1e88ec15ca5e47f3ef3e9b06 242 Gene3D G3DSA:3.60.21.10 43 167 6.9E-12 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS07880 0583616b1e88ec15ca5e47f3ef3e9b06 242 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 23 232 2.2E-66 T 06-07-2017 IPR026336 Metallophosphoesterase, DNA ligase-associated CDO28_RS07880 0583616b1e88ec15ca5e47f3ef3e9b06 242 Pfam PF00149 Calcineurin-like phosphoesterase 43 144 9.4E-8 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS07880 0583616b1e88ec15ca5e47f3ef3e9b06 242 SUPERFAMILY SSF56300 43 135 3.49E-15 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS07880 0583616b1e88ec15ca5e47f3ef3e9b06 242 PIRSF PIRSF000887 22 242 4.8E-57 T 06-07-2017 IPR024173 Phosphoesterase, MJ0037 CDO28_RS09560 2eccbdb10f9c203cf90d5e16324ae63b 70 Pfam PF04102 SlyX 6 70 2.4E-19 T 06-07-2017 IPR007236 SlyX CDO28_RS09560 2eccbdb10f9c203cf90d5e16324ae63b 70 Gene3D G3DSA:1.20.5.300 5 50 4.7E-7 T 06-07-2017 CDO28_RS09560 2eccbdb10f9c203cf90d5e16324ae63b 70 Hamap MF_00715 Protein SlyX [slyX]. 4 70 14.961 T 06-07-2017 IPR007236 SlyX CDO28_RS12325 c9e5a15d07e858ff66b5d39b7095f1d5 337 Pfam PF01380 SIS domain 35 156 5.9E-12 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS12325 c9e5a15d07e858ff66b5d39b7095f1d5 337 PIRSF PIRSF009290 1 337 2.5E-95 T 06-07-2017 IPR024713 Fructosamine deglycase FrlB CDO28_RS12325 c9e5a15d07e858ff66b5d39b7095f1d5 337 SUPERFAMILY SSF53697 23 336 8.1E-53 T 06-07-2017 CDO28_RS12325 c9e5a15d07e858ff66b5d39b7095f1d5 337 Gene3D G3DSA:3.40.50.10490 19 161 2.3E-15 T 06-07-2017 CDO28_RS12325 c9e5a15d07e858ff66b5d39b7095f1d5 337 Gene3D G3DSA:3.40.50.10490 168 258 4.1E-8 T 06-07-2017 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 Gene3D G3DSA:3.90.228.20 339 529 3.7E-120 T 06-07-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 Gene3D G3DSA:3.90.228.20 216 278 3.7E-120 T 06-07-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 253 268 - T 06-07-2017 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 Gene3D G3DSA:3.40.449.10 24 214 9.9E-77 T 06-07-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 PIRSF PIRSF006294 6 531 5.6E-226 T 06-07-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 SUPERFAMILY SSF53795 216 529 8.37E-132 T 06-07-2017 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 11 529 2.0E-205 T 06-07-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 17 531 55.95 T 06-07-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 Pfam PF01293 Phosphoenolpyruvate carboxykinase 24 482 2.3E-214 T 06-07-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CDO28_RS10410 ff0a631ce8c7da9724d27f1858521a90 536 SUPERFAMILY SSF68923 9 214 1.03E-80 T 06-07-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDO28_RS21170 992b56af27028bc69188a5b6c86cf16b 270 Pfam PF08241 Methyltransferase domain 52 144 3.1E-16 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS21170 992b56af27028bc69188a5b6c86cf16b 270 SMART SM00650 35 162 0.0044 T 06-07-2017 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CDO28_RS21170 992b56af27028bc69188a5b6c86cf16b 270 Gene3D G3DSA:3.40.50.150 17 243 8.5E-25 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21170 992b56af27028bc69188a5b6c86cf16b 270 SUPERFAMILY SSF53335 20 269 5.78E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28915 262df16079dd9d7f0f2191bf810e04e6 473 Gene3D G3DSA:3.90.1150.10 354 457 2.2E-20 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS28915 262df16079dd9d7f0f2191bf810e04e6 473 Gene3D G3DSA:3.40.640.10 83 353 1.9E-75 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS28915 262df16079dd9d7f0f2191bf810e04e6 473 SUPERFAMILY SSF53383 2 465 1.94E-103 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS28915 262df16079dd9d7f0f2191bf810e04e6 473 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 43 397 3.4E-41 T 06-07-2017 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 PIRSF PIRSF001413 11 406 2.2E-159 T 06-07-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 92 106 - T 06-07-2017 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 65 389 1.8E-45 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 SUPERFAMILY SSF53686 14 400 1.13E-146 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 18 400 5.3E-192 T 06-07-2017 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 13 402 51.839 T 06-07-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 Gene3D G3DSA:3.40.50.1100 189 403 6.0E-96 T 06-07-2017 CDO28_RS10500 7281b3198054e7d85b08aa44788344bd 406 Gene3D G3DSA:3.40.50.1100 110 188 5.4E-21 T 06-07-2017 CDO28_RS33605 d161e9b28b1add1533ba0fadf8f2c41c 309 Gene3D G3DSA:3.40.50.720 35 192 2.1E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33605 d161e9b28b1add1533ba0fadf8f2c41c 309 Gene3D G3DSA:3.90.25.10 217 277 7.5E-24 T 06-07-2017 CDO28_RS33605 d161e9b28b1add1533ba0fadf8f2c41c 309 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 285 1.1E-83 T 06-07-2017 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581 CDO28_RS33605 d161e9b28b1add1533ba0fadf8f2c41c 309 Pfam PF04321 RmlD substrate binding domain 1 287 2.6E-96 T 06-07-2017 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581 CDO28_RS33605 d161e9b28b1add1533ba0fadf8f2c41c 309 SUPERFAMILY SSF51735 1 288 4.6E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 SUPERFAMILY SSF51395 6 197 1.4E-96 T 06-07-2017 CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 SUPERFAMILY SSF51395 226 378 1.4E-96 T 06-07-2017 CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 Gene3D G3DSA:3.20.20.70 6 380 3.7E-135 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 276 282 - T 06-07-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 Pfam PF01070 FMN-dependent dehydrogenase 16 378 5.4E-127 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 CDO28_RS08255 fefae6f9654813823cfe9f5dc9e6c790 381 PIRSF PIRSF000138 1 381 1.6E-135 T 06-07-2017 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 CDO28_RS23155 dfa1acc848c0b51cc0220e97d037465b 217 Pfam PF01522 Polysaccharide deacetylase 17 139 8.7E-37 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS23155 dfa1acc848c0b51cc0220e97d037465b 217 TIGRFAM TIGR04243 nodulat_NodB: chitooligosaccharide deacetylase NodB 22 214 6.9E-99 T 06-07-2017 IPR026402 Chitooligosaccharide deacetylase NodB CDO28_RS23155 dfa1acc848c0b51cc0220e97d037465b 217 Gene3D G3DSA:3.20.20.370 17 213 2.2E-61 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS23155 dfa1acc848c0b51cc0220e97d037465b 217 SUPERFAMILY SSF88713 16 213 1.26E-61 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS21330 47c566ed3a6a7d9bebd604865a100dee 504 Pfam PF00171 Aldehyde dehydrogenase family 33 491 7.1E-167 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS21330 47c566ed3a6a7d9bebd604865a100dee 504 SUPERFAMILY SSF53720 18 495 1.57E-163 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS21330 47c566ed3a6a7d9bebd604865a100dee 504 Gene3D G3DSA:3.40.309.10 281 465 6.1E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS21330 47c566ed3a6a7d9bebd604865a100dee 504 Gene3D G3DSA:3.40.605.10 20 280 4.7E-93 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS28570 167e5fa933390bf998137d3cc88d3682 305 Pfam PF00753 Metallo-beta-lactamase superfamily 74 280 1.0E-26 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS28570 167e5fa933390bf998137d3cc88d3682 305 SMART SM00849 72 274 1.4E-20 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS28570 167e5fa933390bf998137d3cc88d3682 305 SUPERFAMILY SSF56281 15 303 9.7E-50 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS28570 167e5fa933390bf998137d3cc88d3682 305 Gene3D G3DSA:3.60.15.10 16 300 5.4E-50 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS24615 bab04d2972aa7ca85bc7755e9c65cec2 511 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 5 507 8.6E-213 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS24615 bab04d2972aa7ca85bc7755e9c65cec2 511 PIRSF PIRSF037567 1 511 4.3E-183 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS26490 a20b0c92ab502613664bf976b0d68d1b 279 SUPERFAMILY SSF52540 2 271 4.18E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26490 a20b0c92ab502613664bf976b0d68d1b 279 Gene3D G3DSA:3.40.50.300 7 274 7.0E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26490 a20b0c92ab502613664bf976b0d68d1b 279 Pfam PF00685 Sulfotransferase domain 6 183 1.0E-16 T 06-07-2017 IPR000863 Sulfotransferase domain GO:0008146 CDO28_RS24455 64c85f6c960550f3bf5b3820b782473c 498 Pfam PF00171 Aldehyde dehydrogenase family 32 486 1.1E-165 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS24455 64c85f6c960550f3bf5b3820b782473c 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS24455 64c85f6c960550f3bf5b3820b782473c 498 SUPERFAMILY SSF53720 14 490 1.44E-160 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS24455 64c85f6c960550f3bf5b3820b782473c 498 Gene3D G3DSA:3.40.605.10 16 275 2.0E-88 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS24455 64c85f6c960550f3bf5b3820b782473c 498 Gene3D G3DSA:3.40.309.10 276 459 9.2E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 SUPERFAMILY SSF52096 15 198 5.73E-71 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 197 40.577 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 116 129 - T 06-07-2017 IPR033135 ClpP, histidine active site CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 PRINTS PR00127 Clp protease catalytic subunit P signature 23 38 1.1E-46 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 1.1E-46 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 1.1E-46 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 1.1E-46 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 1.1E-46 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 Gene3D G3DSA:3.90.226.10 7 197 2.2E-81 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS11215 c0f27b5f0b4c305a62c3675d2b3736e4 205 Pfam PF00574 Clp protease 16 196 5.9E-80 T 06-07-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 264 1.5E-4 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 Gene3D G3DSA:3.30.43.10 1 51 1.4E-16 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 Gene3D G3DSA:3.30.390.50 171 265 1.2E-15 T 06-07-2017 CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 Gene3D G3DSA:3.30.465.10 58 165 6.2E-35 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 SMART SM01092 171 265 1.1E-19 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 SUPERFAMILY SSF56176 1 165 2.16E-50 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 165 2.5E-46 T 06-07-2017 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 CDO28_RS12110 6747c09e0ac045ac2ec0fea53ee6b298 265 SUPERFAMILY SSF55447 170 263 6.41E-19 T 06-07-2017 IPR005107 CO dehydrogenase flavoprotein, C-terminal CDO28_RS33460 3857da4227eb5757c2153fcc022132b2 281 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 124 222 2.6E-14 T 06-07-2017 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 CDO28_RS19915 1603961b8ab520681cee8b040aa12619 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 326 6.0E-33 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS00325 71a047ea01987ad219e911473d7f5036 504 SUPERFAMILY SSF52540 4 250 2.34E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00325 71a047ea01987ad219e911473d7f5036 504 Gene3D G3DSA:3.40.50.300 15 252 1.9E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00325 71a047ea01987ad219e911473d7f5036 504 PIRSF PIRSF034081 1 504 2.9E-294 T 06-07-2017 IPR014588 ATPase, Atu1862 type, predicted CDO28_RS00325 71a047ea01987ad219e911473d7f5036 504 SMART SM00382 24 213 0.0011 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS00325 71a047ea01987ad219e911473d7f5036 504 Pfam PF01935 Domain of unknown function DUF87 10 76 1.6E-8 T 06-07-2017 IPR002789 Helicase HerA, central domain CDO28_RS24085 75723da0056d301797546b70d25e931b 61 TIGRFAM TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein 16 57 5.4E-22 T 06-07-2017 IPR004448 Nitrate reductas, NapE, periplasmic CDO28_RS24085 75723da0056d301797546b70d25e931b 61 Pfam PF06796 Periplasmic nitrate reductase protein NapE 8 58 2.0E-23 T 06-07-2017 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 Pfam PF00034 Cytochrome c 238 326 1.0E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 159 207 - T 06-07-2017 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 SUPERFAMILY SSF46626 236 326 1.45E-20 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 Gene3D G3DSA:1.10.760.10 225 326 2.0E-19 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 SUPERFAMILY SSF49503 109 272 2.59E-45 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 Gene3D G3DSA:2.60.40.420 112 224 1.3E-35 T 06-07-2017 IPR008972 Cupredoxin CDO28_RS27460 5e1cb74244afc6210644bf83f6ec2fef 327 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 134 211 4.1E-17 T 06-07-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS25985 ae51d003d4e2ff23bd43ceeb887e619c 185 SUPERFAMILY SSF53187 19 185 4.57E-37 T 06-07-2017 CDO28_RS25985 ae51d003d4e2ff23bd43ceeb887e619c 185 Gene3D G3DSA:3.40.630.10 18 185 3.0E-48 T 06-07-2017 CDO28_RS25985 ae51d003d4e2ff23bd43ceeb887e619c 185 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 89 98 - T 06-07-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CDO28_RS03025 54f902389a8ce4b0e4a5ed608836c023 105 Pfam PF11011 Protein of unknown function (DUF2849) 4 89 4.3E-28 T 06-07-2017 IPR021270 Protein of unknown function DUF2849 CDO28_RS30385 643c46bf00208791429a083b0cfd2500 257 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 39.157 T 06-07-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CDO28_RS30385 643c46bf00208791429a083b0cfd2500 257 Gene3D G3DSA:3.20.20.70 6 253 1.7E-53 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS30385 643c46bf00208791429a083b0cfd2500 257 SUPERFAMILY SSF110399 4 239 9.16E-79 T 06-07-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CDO28_RS30385 643c46bf00208791429a083b0cfd2500 257 Pfam PF05690 Thiazole biosynthesis protein ThiG 5 249 8.7E-107 T 06-07-2017 CDO28_RS17490 07f8166547bd15224d2ace45d739aca1 250 Pfam PF09992 Phosphodiester glycosidase 78 225 5.7E-20 T 06-07-2017 IPR018711 Phosphodiester glycosidase CDO28_RS26470 c77a20469e95cfcd930cf6b3614b6c9c 482 Gene3D G3DSA:2.160.20.10 58 389 1.5E-28 T 06-07-2017 IPR012334 Pectin lyase fold CDO28_RS26470 c77a20469e95cfcd930cf6b3614b6c9c 482 SUPERFAMILY SSF51126 56 391 2.23E-40 T 06-07-2017 IPR011050 Pectin lyase fold/virulence factor CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 Gene3D G3DSA:3.40.50.720 4 167 7.1E-55 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 2.6E-26 T 06-07-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 SUPERFAMILY SSF51735 5 163 2.89E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 Gene3D G3DSA:1.10.1040.10 168 290 1.8E-34 T 06-07-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 163 8.6E-49 T 06-07-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 SUPERFAMILY SSF48179 164 290 5.1E-33 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS21385 702c00aab731cc7ccf41ea9c8db42c83 293 PIRSF PIRSF000103 2 293 1.1E-75 T 06-07-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDO28_RS15125 37fa0fb83ac437a940b45a2996997a1d 90 Gene3D G3DSA:2.10.260.10 12 79 1.1E-6 T 06-07-2017 CDO28_RS15125 37fa0fb83ac437a940b45a2996997a1d 90 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 16 62 3.5E-9 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS15125 37fa0fb83ac437a940b45a2996997a1d 90 SUPERFAMILY SSF89447 12 75 5.23E-12 T 06-07-2017 CDO28_RS15125 37fa0fb83ac437a940b45a2996997a1d 90 SMART SM00966 16 56 2.4E-5 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS25460 71148a3fb3f8b3dc58351337fabcac04 147 Pfam PF05232 Chlorhexidine efflux transporter 4 67 2.0E-24 T 06-07-2017 IPR007896 Chlorhexidine efflux transporter CDO28_RS25460 71148a3fb3f8b3dc58351337fabcac04 147 Pfam PF05232 Chlorhexidine efflux transporter 74 136 7.4E-24 T 06-07-2017 IPR007896 Chlorhexidine efflux transporter CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 PRINTS PR00811 Bacterial general secretion pathway protein D signature 422 440 1.3E-8 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 PRINTS PR00811 Bacterial general secretion pathway protein D signature 214 224 1.3E-8 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 PRINTS PR00811 Bacterial general secretion pathway protein D signature 445 459 1.3E-8 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 PRINTS PR00811 Bacterial general secretion pathway protein D signature 276 300 1.3E-8 T 06-07-2017 IPR001775 GspD/PilQ family CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 Pfam PF00263 Bacterial type II and III secretion system protein 280 458 3.9E-39 T 06-07-2017 IPR004846 Type II/III secretion system GO:0009306 CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 Pfam PF13629 Pilus formation protein N terminal region 51 120 2.7E-19 T 06-07-2017 IPR032789 Pilus formation protein, N-terminal CDO28_RS09885 9d1f6c726cd1929591350aad2b6c0a40 511 Pfam PF04972 BON domain 124 184 4.2E-10 T 06-07-2017 IPR007055 BON domain CDO28_RS16830 52c82889b2bfbe84d131e2d537085215 394 SUPERFAMILY SSF55486 50 286 7.47E-27 T 06-07-2017 CDO28_RS16830 52c82889b2bfbe84d131e2d537085215 394 SUPERFAMILY SSF55486 330 373 7.47E-27 T 06-07-2017 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 305 323 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 423 441 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Gene3D G3DSA:2.150.10.10 3 107 8.5E-17 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Gene3D G3DSA:2.150.10.10 333 535 1.8E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Gene3D G3DSA:2.150.10.10 127 224 3.6E-7 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Gene3D G3DSA:2.150.10.10 235 326 2.2E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 SUPERFAMILY SSF51120 3 107 1.11E-15 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 SUPERFAMILY SSF51120 126 224 2.88E-8 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 SUPERFAMILY SSF51120 233 330 1.31E-12 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 414 432 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 PRINTS PR00313 NodO calcium binding signature 300 308 8.2E-11 T 06-07-2017 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 PRINTS PR00313 NodO calcium binding signature 359 368 8.2E-11 T 06-07-2017 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 PRINTS PR00313 NodO calcium binding signature 39 50 8.2E-11 T 06-07-2017 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 PRINTS PR00313 NodO calcium binding signature 318 326 8.2E-11 T 06-07-2017 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 SUPERFAMILY SSF51120 330 534 1.07E-27 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 47 65 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 187 200 26.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 418 434 0.0061 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 339 348 32.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 274 288 48.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 53 67 1.0 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 435 452 8.4E-4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 311 325 0.17 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 33 49 0.58 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 292 307 0.0085 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 129 145 0.51 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 5 21 0.14 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS17350 4ff12600bb6d4f5a87d760a495e22e91 537 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 400 416 0.21 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS01460 ff035d8a0ead969b11fa3d9a71aac571 461 TIGRFAM TIGR01555 phge_rel_HI1409: phage-associated protein, HI1409 family 10 402 1.2E-79 T 06-07-2017 IPR006445 Phage-associated protein HI1409 CDO28_RS01460 ff035d8a0ead969b11fa3d9a71aac571 461 Pfam PF06381 Protein of unknown function (DUF1073) 40 388 5.2E-120 T 06-07-2017 IPR024459 Protein of unknown function DUF1073 CDO28_RS30165 b45d490260d3e60749fa02882a439125 204 Gene3D G3DSA:2.60.130.10 6 203 3.7E-64 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS30165 b45d490260d3e60749fa02882a439125 204 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 55 83 - T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 CDO28_RS30165 b45d490260d3e60749fa02882a439125 204 SUPERFAMILY SSF49482 7 204 1.96E-59 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS30165 b45d490260d3e60749fa02882a439125 204 Pfam PF00775 Dioxygenase 42 194 3.3E-18 T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 CDO28_RS30165 b45d490260d3e60749fa02882a439125 204 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 11 204 1.2E-74 T 06-07-2017 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 CDO28_RS20310 81ba2a1d9ffbc1eda184aa21b036ea38 160 SMART SM00953 24 145 2.1E-12 T 06-07-2017 IPR014914 RES domain CDO28_RS20310 81ba2a1d9ffbc1eda184aa21b036ea38 160 Pfam PF08808 RES domain 13 146 7.7E-16 T 06-07-2017 IPR014914 RES domain CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SMART SM00248 34 63 0.022 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SMART SM00248 100 129 3.1 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SMART SM00248 133 167 2.2 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SMART SM00248 67 96 720.0 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SMART SM00248 171 200 610.0 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 SUPERFAMILY SSF48403 6 196 1.11E-47 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 Gene3D G3DSA:1.25.40.20 6 198 5.4E-48 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 Pfam PF12796 Ankyrin repeats (3 copies) 6 65 7.3E-7 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 Pfam PF12796 Ankyrin repeats (3 copies) 75 167 4.8E-12 T 06-07-2017 IPR020683 Ankyrin repeat-containing domain CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 PRINTS PR01415 Ankyrin repeat signature 154 168 1.6E-5 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS08745 271c2a6debbffaac0ae774ece9c29163 201 PRINTS PR01415 Ankyrin repeat signature 101 116 1.6E-5 T 06-07-2017 IPR002110 Ankyrin repeat GO:0005515 CDO28_RS33235 e957fbf1763a06dc8811d01a99a6e8fe 81 Pfam PF06169 Protein of unknown function (DUF982) 7 78 1.5E-22 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS23370 46750fe1f5585935316d458542a70f64 447 Pfam PF11737 Protein of unknown function (DUF3300) 45 255 5.2E-55 T 06-07-2017 IPR021728 Protein of unknown function DUF3300 CDO28_RS05340 39c0fed7613b684af252afeb694b9f8e 295 Gene3D G3DSA:1.10.3720.10 92 275 1.9E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS05340 39c0fed7613b684af252afeb694b9f8e 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 283 9.2E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS05340 39c0fed7613b684af252afeb694b9f8e 295 SUPERFAMILY SSF161098 96 279 2.75E-40 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 Gene3D G3DSA:3.40.50.300 388 389 1.1E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 Gene3D G3DSA:3.40.50.300 179 201 1.1E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 Gene3D G3DSA:3.40.50.300 1050 1141 1.1E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 Gene3D G3DSA:3.40.50.300 1 45 1.1E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 SUPERFAMILY SSF52540 1 87 1.35E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 SUPERFAMILY SSF52540 1043 1141 1.35E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04165 b90b659f7145ba4ec8e4a2edfc1c9001 1153 Pfam PF13514 AAA domain 1 208 5.0E-68 T 06-07-2017 CDO28_RS21670 abbdd203010cc494c1e06b2131250feb 470 SUPERFAMILY SSF53474 196 336 3.66E-10 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21670 abbdd203010cc494c1e06b2131250feb 470 PIRSF PIRSF014728 3 469 1.2E-91 T 06-07-2017 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type CDO28_RS21670 abbdd203010cc494c1e06b2131250feb 470 Gene3D G3DSA:3.40.50.1820 174 334 1.8E-11 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS21670 abbdd203010cc494c1e06b2131250feb 470 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 30 390 2.4E-128 T 06-07-2017 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type CDO28_RS11650 cec3e7532839bc10f4ada4a4d05f3d9b 159 SUPERFAMILY SSF158682 1 146 2.22E-28 T 06-07-2017 IPR029024 TerB-like CDO28_RS11650 cec3e7532839bc10f4ada4a4d05f3d9b 159 Pfam PF05099 Tellurite resistance protein TerB 19 139 1.6E-41 T 06-07-2017 IPR007791 Co-chaperone DjlA, N-terminal CDO28_RS11650 cec3e7532839bc10f4ada4a4d05f3d9b 159 Gene3D G3DSA:1.10.3680.10 8 135 4.0E-21 T 06-07-2017 IPR029024 TerB-like CDO28_RS12660 7916aa559e0d36c16f1f7c2a28d02030 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 219 8.3E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12660 7916aa559e0d36c16f1f7c2a28d02030 221 SUPERFAMILY SSF161098 9 201 2.09E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12660 7916aa559e0d36c16f1f7c2a28d02030 221 Gene3D G3DSA:1.10.3720.10 9 216 3.7E-39 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS34270 237ade940db1ca722e419bd0b01177df 819 SUPERFAMILY SSF52540 427 772 5.75E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34270 237ade940db1ca722e419bd0b01177df 819 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 16 813 1.8E-205 T 06-07-2017 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 CDO28_RS34270 237ade940db1ca722e419bd0b01177df 819 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 206 407 3.2E-37 T 06-07-2017 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 CDO28_RS34270 237ade940db1ca722e419bd0b01177df 819 Gene3D G3DSA:3.40.50.300 660 728 7.3E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34270 237ade940db1ca722e419bd0b01177df 819 Gene3D G3DSA:3.40.50.300 437 602 7.3E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 879 942 6.1E-12 T 06-07-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 925 0.0 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Pfam PF08264 Anticodon-binding domain of tRNA 673 821 6.5E-43 T 06-07-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 SUPERFAMILY SSF47323 643 894 2.8E-61 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Gene3D G3DSA:3.40.50.620 3 191 2.9E-147 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Gene3D G3DSA:3.40.50.620 384 629 2.9E-147 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Gene3D G3DSA:3.90.740.10 197 377 9.5E-42 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Gene3D G3DSA:1.10.730.10 631 813 3.0E-65 T 06-07-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 944 15.765 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 SUPERFAMILY SSF46589 879 940 6.8E-12 T 06-07-2017 IPR010978 tRNA-binding arm GO:0000166 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Gene3D G3DSA:1.10.287.380 872 943 2.1E-7 T 06-07-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 SUPERFAMILY SSF52374 381 641 4.51E-143 T 06-07-2017 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 SUPERFAMILY SSF52374 3 195 4.51E-143 T 06-07-2017 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 631 2.3E-208 T 06-07-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 SUPERFAMILY SSF50677 195 382 1.31E-53 T 06-07-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 7.7E-36 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 PRINTS PR00986 Valyl-tRNA synthetase signature 537 555 7.7E-36 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 PRINTS PR00986 Valyl-tRNA synthetase signature 506 527 7.7E-36 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 PRINTS PR00986 Valyl-tRNA synthetase signature 386 399 7.7E-36 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 PRINTS PR00986 Valyl-tRNA synthetase signature 253 270 7.7E-36 T 06-07-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDO28_RS02785 3d878dbe441e30244a60498a14655abb 947 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 06-07-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDO28_RS11060 c1755d2cbaa9f95fef95326ec06e7e22 503 Gene3D G3DSA:3.30.2010.10 84 164 2.6E-16 T 06-07-2017 CDO28_RS11060 c1755d2cbaa9f95fef95326ec06e7e22 503 Pfam PF01435 Peptidase family M48 93 269 3.1E-29 T 06-07-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDO28_RS25900 d6ed86454a45a158f3ad54b17f301c4f 156 Gene3D G3DSA:1.10.760.10 53 145 1.1E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25900 d6ed86454a45a158f3ad54b17f301c4f 156 SUPERFAMILY SSF46626 48 149 1.03E-10 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS28680 53e76748d8ea636f27e4eb648e440e63 469 PIRSF PIRSF005522 1 469 3.1E-223 T 06-07-2017 IPR016450 Uncharacterised conserved protein UCP005522 CDO28_RS28680 53e76748d8ea636f27e4eb648e440e63 469 SUPERFAMILY SSF56059 315 460 2.76E-69 T 06-07-2017 CDO28_RS28680 53e76748d8ea636f27e4eb648e440e63 469 SUPERFAMILY SSF56059 13 207 2.76E-69 T 06-07-2017 CDO28_RS28680 53e76748d8ea636f27e4eb648e440e63 469 Pfam PF14403 Circularly permuted ATP-grasp type 2 69 445 1.0E-160 T 06-07-2017 IPR025841 Circularly permuted ATP-grasp type 2 CDO28_RS09320 ee908c8eba2c5bf26140f317f8ec7df5 129 Pfam PF09538 Protein of unknown function (FYDLN_acid) 2 109 1.9E-22 T 06-07-2017 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid CDO28_RS09320 ee908c8eba2c5bf26140f317f8ec7df5 129 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 125 2.3E-52 T 06-07-2017 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Gene3D G3DSA:3.40.50.300 4 235 5.0E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Pfam PF08402 TOBE domain 279 348 5.0E-5 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 SMART SM00382 29 212 2.9E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Pfam PF00005 ABC transporter 20 162 4.4E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Gene3D G3DSA:2.40.50.100 240 283 2.5E-9 T 06-07-2017 CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Gene3D G3DSA:2.40.50.100 342 351 2.5E-9 T 06-07-2017 CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 SUPERFAMILY SSF52540 5 244 1.46E-83 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 SUPERFAMILY SSF50331 237 356 1.13E-26 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS27905 6325f2482bb5563196c9e14d77a0ae09 383 Gene3D G3DSA:2.40.50.140 284 341 1.0E-6 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 SUPERFAMILY SSF50249 1 67 2.57E-21 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 PIRSF PIRSF002599 1 68 6.1E-21 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 Gene3D G3DSA:2.40.50.140 1 63 3.9E-25 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 63 4.8E-22 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 PRINTS PR00050 Cold shock protein signature 4 19 2.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 PRINTS PR00050 Cold shock protein signature 40 58 2.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 PRINTS PR00050 Cold shock protein signature 25 34 2.1E-12 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS21050 f7d09c2000b634bc8936b5cdb3223543 69 SMART SM00357 3 69 2.4E-21 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 Gene3D G3DSA:3.40.640.10 46 311 1.3E-80 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 Pfam PF00155 Aminotransferase class I and II 28 384 2.3E-70 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 SUPERFAMILY SSF53383 1 374 5.96E-94 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 239 252 - T 06-07-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 PRINTS PR00799 Aspartate aminotransferase signature 335 353 2.2E-27 T 06-07-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 PRINTS PR00799 Aspartate aminotransferase signature 171 190 2.2E-27 T 06-07-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 PRINTS PR00799 Aspartate aminotransferase signature 269 294 2.2E-27 T 06-07-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDO28_RS09025 6cda1abd026b4b02a89b15ed08cd86aa 389 PRINTS PR00799 Aspartate aminotransferase signature 202 214 2.2E-27 T 06-07-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDO28_RS23535 3b1f433b2bbd566d98c5a488e9739c75 99 SUPERFAMILY SSF54909 1 89 1.53E-17 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS23535 3b1f433b2bbd566d98c5a488e9739c75 99 Gene3D G3DSA:3.30.70.1060 1 90 2.3E-18 T 06-07-2017 CDO28_RS23535 3b1f433b2bbd566d98c5a488e9739c75 99 Pfam PF03795 YCII-related domain 1 88 3.0E-14 T 06-07-2017 IPR005545 YCII-related CDO28_RS11235 fa79a0ec29be6e9be5e16925e7b16cfc 239 Pfam PF00005 ABC transporter 25 171 8.6E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS11235 fa79a0ec29be6e9be5e16925e7b16cfc 239 Gene3D G3DSA:3.40.50.300 3 224 7.1E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11235 fa79a0ec29be6e9be5e16925e7b16cfc 239 SMART SM00382 34 220 1.9E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11235 fa79a0ec29be6e9be5e16925e7b16cfc 239 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11235 fa79a0ec29be6e9be5e16925e7b16cfc 239 SUPERFAMILY SSF52540 5 226 4.41E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS01450 9ba8ffaed681c87f4d9377bd7ba3fcb9 153 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 6 104 6.5E-45 T 06-07-2017 IPR018738 Protein of unknown function DUF2280 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 Gene3D G3DSA:1.10.10.10 107 164 2.3E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 Gene3D G3DSA:1.10.1740.10 8 80 2.5E-15 T 06-07-2017 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 SUPERFAMILY SSF88659 106 163 7.2E-13 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 Pfam PF04542 Sigma-70 region 2 14 80 1.7E-10 T 06-07-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 Pfam PF08281 Sigma-70, region 4 107 158 3.6E-11 T 06-07-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 162 6.1E-19 T 06-07-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS12945 b3b2c1051c1d2243fbb2b99d53406c54 178 SUPERFAMILY SSF88946 10 93 2.98E-14 T 06-07-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS22060 331e60ae9f0b5ed85db045dd20849908 301 Gene3D G3DSA:1.10.3720.10 11 292 6.2E-66 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22060 331e60ae9f0b5ed85db045dd20849908 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 292 1.1E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22060 331e60ae9f0b5ed85db045dd20849908 301 SUPERFAMILY SSF161098 62 290 3.53E-63 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21490 f87fb905c8ad785f4efa76a884eac483 116 PIRSF PIRSF033199 1 116 5.8E-64 T 06-07-2017 IPR014580 Uncharacterised conserved protein UCP033199 CDO28_RS21490 f87fb905c8ad785f4efa76a884eac483 116 Gene3D G3DSA:1.10.8.290 1 116 1.8E-59 T 06-07-2017 IPR023204 SP1917 domain CDO28_RS21490 f87fb905c8ad785f4efa76a884eac483 116 Pfam PF09966 Uncharacterized protein conserved in bacteria (DUF2200) 5 115 3.6E-52 T 06-07-2017 IPR014580 Uncharacterised conserved protein UCP033199 CDO28_RS01390 f4a5b58daf3d4c70d15b16258b578888 144 Gene3D G3DSA:1.10.10.60 6 35 1.0E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS01390 f4a5b58daf3d4c70d15b16258b578888 144 Pfam PF07750 GcrA cell cycle regulator 11 134 2.9E-9 T 06-07-2017 IPR011681 GcrA cell cycle regulator CDO28_RS29895 ecf7820825a62c58b68aaea7fc2d53c8 316 Pfam PF13407 Periplasmic binding protein domain 29 261 7.4E-40 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS29895 ecf7820825a62c58b68aaea7fc2d53c8 316 Gene3D G3DSA:3.40.50.2300 151 310 1.7E-36 T 06-07-2017 CDO28_RS29895 ecf7820825a62c58b68aaea7fc2d53c8 316 Gene3D G3DSA:3.40.50.2300 26 150 7.0E-24 T 06-07-2017 CDO28_RS29895 ecf7820825a62c58b68aaea7fc2d53c8 316 SUPERFAMILY SSF53822 6 309 7.79E-62 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS08955 03be2733751935987672fde6704b36af 516 SUPERFAMILY SSF46626 375 516 3.69E-27 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS08955 03be2733751935987672fde6704b36af 516 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 71 516 2.7E-125 T 06-07-2017 IPR010538 Di-haem oxidoreductase, putative peroxidase CDO28_RS08955 03be2733751935987672fde6704b36af 516 Gene3D G3DSA:1.10.760.10 376 516 2.5E-18 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS08955 03be2733751935987672fde6704b36af 516 PIRSF PIRSF028099 8 516 4.9E-175 T 06-07-2017 IPR010538 Di-haem oxidoreductase, putative peroxidase CDO28_RS29200 fe9a97d96cee0117c8531f33465edc66 365 Pfam PF04332 Protein of unknown function (DUF475) 61 349 1.7E-105 T 06-07-2017 IPR007427 Protein of unknown function DUF475 CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 TIGRFAM TIGR02772 Ku_bact: Ku protein 5 258 3.5E-85 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 Pfam PF02735 Ku70/Ku80 beta-barrel domain 15 179 9.0E-34 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 SUPERFAMILY SSF100939 6 262 9.42E-51 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 SMART SM00559 57 186 5.3E-22 T 06-07-2017 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571 CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 PIRSF PIRSF006493 3 294 1.8E-117 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 Gene3D G3DSA:2.40.290.10 7 148 1.5E-13 T 06-07-2017 IPR016194 SPOC-like, C-terminal domain CDO28_RS28875 1f9663ed9a5224fc8a3abb5757b369bb 294 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 5 257 32.204 T 06-07-2017 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CDO28_RS13860 b007492d57989778b409ff203e3390e4 214 Gene3D G3DSA:3.40.50.150 1 160 9.2E-27 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS13860 b007492d57989778b409ff203e3390e4 214 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 3 121 8.6E-20 T 06-07-2017 CDO28_RS13860 b007492d57989778b409ff203e3390e4 214 SUPERFAMILY SSF53335 2 109 3.16E-23 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 Gene3D G3DSA:4.10.520.10 1 90 4.1E-36 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 06-07-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 7.8E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 7.8E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 7.8E-16 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 SUPERFAMILY SSF47729 1 90 5.15E-32 T 06-07-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 SMART SM00411 1 90 3.6E-46 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS04190 6c0606b30c2059d4c672173877c70471 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.8E-33 T 06-07-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 CDO28_RS29850 e1ccb85448864a70a0cb928df7cf820e 270 Pfam PF01261 Xylose isomerase-like TIM barrel 22 183 4.3E-23 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29850 e1ccb85448864a70a0cb928df7cf820e 270 Gene3D G3DSA:3.20.20.150 2 267 1.1E-87 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29850 e1ccb85448864a70a0cb928df7cf820e 270 SUPERFAMILY SSF51658 4 267 1.83E-66 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29850 e1ccb85448864a70a0cb928df7cf820e 270 PIRSF PIRSF036778 1 270 5.6E-135 T 06-07-2017 IPR014621 Uncharacterised conserved protein UCP036778, sugar epimerase-type CDO28_RS31525 d9dc7d02e0a01fb03014d5417dc084c9 207 SMART SM00382 26 193 2.8E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31525 d9dc7d02e0a01fb03014d5417dc084c9 207 ProSitePatterns PS00211 ABC transporters family signature. 115 129 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS31525 d9dc7d02e0a01fb03014d5417dc084c9 207 SUPERFAMILY SSF52540 7 190 1.09E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS31525 d9dc7d02e0a01fb03014d5417dc084c9 207 Pfam PF00005 ABC transporter 17 141 4.3E-25 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS31525 d9dc7d02e0a01fb03014d5417dc084c9 207 Gene3D G3DSA:3.40.50.300 2 189 2.7E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 ProSitePatterns PS00161 Isocitrate lyase signature. 183 188 - T 06-07-2017 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 PIRSF PIRSF001362 1 427 8.1E-237 T 06-07-2017 CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 14 243 4.2E-94 T 06-07-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 SUPERFAMILY SSF51621 11 424 8.52E-149 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 Pfam PF00463 Isocitrate lyase family 14 243 6.5E-54 T 06-07-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDO28_RS07065 ba27c61f1ef608bc39c1dafee3784511 429 Gene3D G3DSA:3.20.20.60 13 406 5.9E-157 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS21730 94b39765b85aa36ba9d7765fe699f3c5 317 Pfam PF12679 ABC-2 family transporter protein 12 314 7.0E-35 T 06-07-2017 IPR032688 ABC-2 family transporter protein GO:0006810 CDO28_RS10810 05f60ba1de138d270d10786b547c4c0e 213 Pfam PF01810 LysE type translocator 15 200 1.2E-15 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS27490 452431dc249b620a395efe2aab4621ec 313 Pfam PF00294 pfkB family carbohydrate kinase 1 298 1.5E-43 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS27490 452431dc249b620a395efe2aab4621ec 313 Gene3D G3DSA:3.40.1190.20 1 311 4.8E-73 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS27490 452431dc249b620a395efe2aab4621ec 313 SUPERFAMILY SSF53613 1 308 4.05E-71 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS23975 2b5baed162561d4bca65af9c8de1a727 139 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 5 131 10.206 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS23975 2b5baed162561d4bca65af9c8de1a727 139 Gene3D G3DSA:3.40.50.1010 3 133 4.8E-31 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS23975 2b5baed162561d4bca65af9c8de1a727 139 Pfam PF01850 PIN domain 5 124 1.1E-15 T 06-07-2017 IPR002716 PIN domain CDO28_RS23975 2b5baed162561d4bca65af9c8de1a727 139 SUPERFAMILY SSF88723 3 132 6.45E-35 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 SUPERFAMILY SSF51905 44 360 7.32E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 Gene3D G3DSA:3.50.50.60 229 260 7.0E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 Gene3D G3DSA:3.50.50.60 294 351 7.0E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 46 260 5.9E-15 T 06-07-2017 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 Gene3D G3DSA:3.50.50.60 44 228 5.0E-20 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 226 244 1.2E-6 T 06-07-2017 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 45 64 1.2E-6 T 06-07-2017 CDO28_RS31980 5d7edda40cf28d85537432abdd39215f 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 1.2E-6 T 06-07-2017 CDO28_RS01050 b8bd92ce17ff80e4c9e807f761d28b9b 271 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 9.0E-97 T 06-07-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CDO28_RS01050 b8bd92ce17ff80e4c9e807f761d28b9b 271 SUPERFAMILY SSF51366 12 262 2.12E-88 T 06-07-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CDO28_RS01050 b8bd92ce17ff80e4c9e807f761d28b9b 271 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 06-07-2017 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 CDO28_RS01050 b8bd92ce17ff80e4c9e807f761d28b9b 271 Gene3D G3DSA:3.20.20.70 1 265 6.0E-104 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS01050 b8bd92ce17ff80e4c9e807f761d28b9b 271 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 36.527 T 06-07-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 SUPERFAMILY SSF52540 1 241 1.2E-73 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 Gene3D G3DSA:3.40.50.300 1 242 9.3E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 PIRSF PIRSF039085 1 247 2.9E-98 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 SMART SM00382 26 218 5.2E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS10960 05cad5f665fc1488484837466093b10d 253 Pfam PF00005 ABC transporter 17 171 4.6E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 10 467 1.7E-161 T 06-07-2017 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Gene3D G3DSA:3.50.50.60 35 95 6.0E-6 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 SUPERFAMILY SSF51905 5 377 3.88E-25 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Gene3D G3DSA:3.50.50.60 10 19 2.1E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Gene3D G3DSA:3.50.50.60 104 129 2.1E-4 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 352 375 - T 06-07-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 11 470 34.213 T 06-07-2017 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Pfam PF01134 Glucose inhibited division protein A 11 381 2.3E-105 T 06-07-2017 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Gene3D G3DSA:3.50.50.60 221 284 6.3E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS02650 8ea4368c277857208418f2057ea95ff0 472 Gene3D G3DSA:3.50.50.60 20 34 6.3E-5 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25145 4cac28347b3d56eb1728b6a7e71f9164 555 Gene3D G3DSA:3.40.720.10 32 407 2.2E-95 T 06-07-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CDO28_RS25145 4cac28347b3d56eb1728b6a7e71f9164 555 Gene3D G3DSA:3.30.1120.10 415 515 1.5E-10 T 06-07-2017 CDO28_RS25145 4cac28347b3d56eb1728b6a7e71f9164 555 Pfam PF14707 C-terminal region of aryl-sulfatase 410 515 3.1E-8 T 06-07-2017 CDO28_RS25145 4cac28347b3d56eb1728b6a7e71f9164 555 Pfam PF00884 Sulfatase 34 381 1.1E-60 T 06-07-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CDO28_RS25145 4cac28347b3d56eb1728b6a7e71f9164 555 SUPERFAMILY SSF53649 31 516 2.04E-107 T 06-07-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CDO28_RS25560 f57cea1e3c270f5d6a6d66403bad3ea4 152 Pfam PF07681 DoxX 29 103 9.0E-14 T 06-07-2017 IPR032808 DoxX family CDO28_RS10135 29dda12497b502e550eb14adc0864eb9 465 PIRSF PIRSF006060 1 461 1.0E-71 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS10135 29dda12497b502e550eb14adc0864eb9 465 Pfam PF13520 Amino acid permease 27 423 3.3E-26 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS22565 e3437701505f3dba1bf6d262b789fa86 115 ProDom PD173887 TRANSCRIPTION REGULATOR REGULATION FIXT ANTIKINASE PLASMID TRANSCRIPTIONAL KINASE REPRESSOR FIXT2 1 96 2.0E-38 T 06-07-2017 CDO28_RS22750 e3437701505f3dba1bf6d262b789fa86 115 ProDom PD173887 TRANSCRIPTION REGULATOR REGULATION FIXT ANTIKINASE PLASMID TRANSCRIPTIONAL KINASE REPRESSOR FIXT2 1 96 2.0E-38 T 06-07-2017 CDO28_RS02850 c180f841f65584e1d75943a113327565 154 SUPERFAMILY SSF54637 10 152 2.9E-50 T 06-07-2017 IPR029069 HotDog domain CDO28_RS02850 c180f841f65584e1d75943a113327565 154 Gene3D G3DSA:3.10.129.10 11 149 5.6E-57 T 06-07-2017 IPR029069 HotDog domain CDO28_RS02850 c180f841f65584e1d75943a113327565 154 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 11 150 33.692 T 06-07-2017 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS02850 c180f841f65584e1d75943a113327565 154 Pfam PF07977 FabA-like domain 20 142 1.8E-37 T 06-07-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS02850 c180f841f65584e1d75943a113327565 154 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 12 147 1.2E-58 T 06-07-2017 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 PRINTS PR00069 Aldo-keto reductase signature 48 72 5.7E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 PRINTS PR00069 Aldo-keto reductase signature 112 130 5.7E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 PRINTS PR00069 Aldo-keto reductase signature 143 160 5.7E-7 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 Pfam PF00248 Aldo/keto reductase family 16 318 9.8E-71 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 Gene3D G3DSA:3.20.20.100 1 319 1.7E-99 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS12920 5a2fde16ff3adb43a816efa336a84279 344 SUPERFAMILY SSF51430 1 319 1.14E-100 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS17820 88fa55efcdd6a60a4388abe765aa0bf4 176 SUPERFAMILY SSF51161 13 170 2.5E-49 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS17820 88fa55efcdd6a60a4388abe765aa0bf4 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 124 3.0E-11 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS17820 88fa55efcdd6a60a4388abe765aa0bf4 176 Gene3D G3DSA:2.160.10.10 19 169 8.9E-49 T 06-07-2017 CDO28_RS00450 63be38b6782a318643a7428c29f25a7f 244 SUPERFAMILY SSF102588 4 238 5.23E-53 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CDO28_RS00450 63be38b6782a318643a7428c29f25a7f 244 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 136 8.2E-22 T 06-07-2017 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 CDO28_RS00450 63be38b6782a318643a7428c29f25a7f 244 Gene3D G3DSA:3.40.50.10320 3 238 1.9E-49 T 06-07-2017 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CDO28_RS24875 0dd67f0de0b5a743d022a7ab304a7371 170 Pfam PF01478 Type IV leader peptidase family 13 115 3.6E-12 T 06-07-2017 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CDO28_RS01130 c57fd1ff65729764dd7983ec530b3ef3 391 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 97 324 8.8E-87 T 06-07-2017 IPR010297 Protein of unknown function DUF900, hydrolase-like CDO28_RS01130 c57fd1ff65729764dd7983ec530b3ef3 391 PIRSF PIRSF033909 1 355 9.5E-155 T 06-07-2017 IPR014586 Uncharacterised conserved protein UCP033909 CDO28_RS01130 c57fd1ff65729764dd7983ec530b3ef3 391 Gene3D G3DSA:3.40.50.1820 113 329 7.0E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS01130 c57fd1ff65729764dd7983ec530b3ef3 391 SUPERFAMILY SSF53474 100 277 4.74E-14 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS12715 1047ca8397b0258da599561c846767a1 147 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 146 9.58 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS12715 1047ca8397b0258da599561c846767a1 147 SUPERFAMILY SSF88723 1 144 3.14E-15 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS12715 1047ca8397b0258da599561c846767a1 147 Pfam PF01850 PIN domain 3 138 1.1E-11 T 06-07-2017 IPR002716 PIN domain CDO28_RS01760 3535614a3bedf4e57e382b176d92455b 108 Pfam PF00893 Small Multidrug Resistance protein 10 98 4.0E-18 T 06-07-2017 IPR000390 Small multidrug resistance protein family GO:0016021 CDO28_RS01760 3535614a3bedf4e57e382b176d92455b 108 SUPERFAMILY SSF103481 12 106 2.22E-15 T 06-07-2017 CDO28_RS08950 64c007c86fde028a561ef3b7d13d2044 426 Pfam PF09375 Imelysin 42 397 2.3E-96 T 06-07-2017 CDO28_RS19115 89d7d0f3bcdcdac590d7897ce12301e8 740 Gene3D G3DSA:1.25.40.10 485 691 2.2E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS19115 89d7d0f3bcdcdac590d7897ce12301e8 740 SUPERFAMILY SSF48452 489 691 7.59E-20 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS09950 b3321a73b37a1470bc766b8a0be3187b 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 301 3.3E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 Gene3D G3DSA:3.40.50.720 3 249 4.8E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 3.6E-58 T 06-07-2017 CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.5E-39 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 9.1E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 9.1E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.1E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 SUPERFAMILY SSF51735 4 249 3.5E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11820 5019acf2dcc0ff0c8c1ae83a4badbe91 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS14340 9ab0a05474579bd42b7719e435c4bb3b 321 Gene3D G3DSA:3.40.50.2300 141 315 1.8E-43 T 06-07-2017 CDO28_RS14340 9ab0a05474579bd42b7719e435c4bb3b 321 Gene3D G3DSA:3.40.50.2300 22 140 8.4E-34 T 06-07-2017 CDO28_RS14340 9ab0a05474579bd42b7719e435c4bb3b 321 SUPERFAMILY SSF53822 25 315 2.19E-68 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS14340 9ab0a05474579bd42b7719e435c4bb3b 321 Pfam PF13407 Periplasmic binding protein domain 28 290 1.8E-49 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS29005 14f8b8973c99221d9981e7b86e35757c 377 SUPERFAMILY SSF53807 28 344 1.54E-54 T 06-07-2017 CDO28_RS29005 14f8b8973c99221d9981e7b86e35757c 377 Gene3D G3DSA:3.40.50.1980 25 172 5.3E-17 T 06-07-2017 CDO28_RS29005 14f8b8973c99221d9981e7b86e35757c 377 Pfam PF01497 Periplasmic binding protein 104 317 3.4E-27 T 06-07-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CDO28_RS29005 14f8b8973c99221d9981e7b86e35757c 377 Gene3D G3DSA:3.40.50.1980 188 342 1.6E-31 T 06-07-2017 CDO28_RS30565 3152487491c9e9c8e9a51e89f745ae3d 424 Pfam PF13416 Bacterial extracellular solute-binding protein 52 330 1.4E-39 T 06-07-2017 CDO28_RS30565 3152487491c9e9c8e9a51e89f745ae3d 424 Gene3D G3DSA:3.40.190.10 32 146 4.1E-29 T 06-07-2017 CDO28_RS30565 3152487491c9e9c8e9a51e89f745ae3d 424 Gene3D G3DSA:3.40.190.10 316 363 4.1E-29 T 06-07-2017 CDO28_RS30565 3152487491c9e9c8e9a51e89f745ae3d 424 SUPERFAMILY SSF53850 28 422 9.45E-62 T 06-07-2017 CDO28_RS30565 3152487491c9e9c8e9a51e89f745ae3d 424 Gene3D G3DSA:3.40.190.10 148 315 6.8E-33 T 06-07-2017 CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 Pfam PF01343 Peptidase family S49 87 226 1.6E-29 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 SUPERFAMILY SSF52096 163 223 3.98E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 SUPERFAMILY SSF52096 19 134 3.98E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 Gene3D G3DSA:3.90.226.10 20 130 3.8E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 Gene3D G3DSA:3.90.226.10 198 233 3.8E-33 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 PRINTS PR00127 Clp protease catalytic subunit P signature 60 80 9.8E-5 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 PRINTS PR00127 Clp protease catalytic subunit P signature 95 112 9.8E-5 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS06340 2d4650db51dc4e4530d8551d3ce1646b 288 PRINTS PR00127 Clp protease catalytic subunit P signature 200 219 9.8E-5 T 06-07-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDO28_RS16290 5f0f8532c2c77bfd1dd86cdd34e4be7d 261 Pfam PF01183 Glycosyl hydrolases family 25 56 234 5.2E-62 T 06-07-2017 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CDO28_RS16290 5f0f8532c2c77bfd1dd86cdd34e4be7d 261 SMART SM00641 53 157 4.0E-22 T 06-07-2017 IPR018077 Glycoside hydrolase, family 25 subgroup CDO28_RS16290 5f0f8532c2c77bfd1dd86cdd34e4be7d 261 SUPERFAMILY SSF51445 51 255 2.88E-65 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS16290 5f0f8532c2c77bfd1dd86cdd34e4be7d 261 Gene3D G3DSA:3.20.20.80 52 255 2.9E-69 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS06220 a0381afea5a7f3a292c0bf3828d2e57f 137 Pfam PF07886 BA14K-like protein 104 133 7.7E-15 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 Pfam PF00271 Helicase conserved C-terminal domain 325 425 5.0E-15 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 104 499 5.3E-86 T 06-07-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 SMART SM00487 106 304 3.7E-20 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 Gene3D G3DSA:3.40.50.300 103 289 1.8E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 Pfam PF00270 DEAD/DEAH box helicase 118 275 2.1E-18 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 SMART SM00490 340 425 3.3E-17 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 Pfam PF14279 HNH endonuclease 19 59 2.3E-8 T 06-07-2017 IPR029471 HNH endonuclease 5 CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 SUPERFAMILY SSF52540 120 434 2.59E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 SMART SM00507 6 59 1.0E-10 T 06-07-2017 IPR003615 HNH nuclease CDO28_RS02535 10dec1ced92e1f4c466907b55c2de4ee 557 Gene3D G3DSA:3.40.50.300 295 435 8.2E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS03325 6f10e0f2985933bd5ae3bf949f9a7a83 202 Pfam PF07238 PilZ domain 119 195 4.3E-7 T 06-07-2017 IPR009875 PilZ domain GO:0035438 CDO28_RS03325 6f10e0f2985933bd5ae3bf949f9a7a83 202 SUPERFAMILY SSF141371 117 193 1.67E-7 T 06-07-2017 CDO28_RS17410 49aad9642f8a9dbb9ff6bb73e4a8d396 220 Pfam PF07931 Chloramphenicol phosphotransferase-like protein 8 198 8.1E-66 T 06-07-2017 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 CDO28_RS17410 49aad9642f8a9dbb9ff6bb73e4a8d396 220 SUPERFAMILY SSF52540 6 199 4.74E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17410 49aad9642f8a9dbb9ff6bb73e4a8d396 220 PIRSF PIRSF007531 1 215 3.1E-80 T 06-07-2017 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 CDO28_RS17410 49aad9642f8a9dbb9ff6bb73e4a8d396 220 Gene3D G3DSA:3.40.50.300 7 198 4.7E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09515 23494d2f9a9a90f3e82d0694129668df 666 Gene3D G3DSA:2.40.170.20 156 666 9.9E-76 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS09515 23494d2f9a9a90f3e82d0694129668df 666 Pfam PF00593 TonB dependent receptor 415 664 1.6E-21 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS09515 23494d2f9a9a90f3e82d0694129668df 666 SUPERFAMILY SSF56935 27 666 7.33E-101 T 06-07-2017 CDO28_RS09515 23494d2f9a9a90f3e82d0694129668df 666 Gene3D G3DSA:2.170.130.10 25 155 3.8E-31 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS09515 23494d2f9a9a90f3e82d0694129668df 666 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 153 2.1E-14 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 24.556 T 06-07-2017 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 Gene3D G3DSA:3.90.470.20 1 128 6.4E-37 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 99 7.0E-49 T 06-07-2017 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 129 2.8E-23 T 06-07-2017 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 SUPERFAMILY SSF56214 1 128 3.01E-27 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 129 4.8E-27 T 06-07-2017 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CDO28_RS05160 feebbc700df55a50863379c7839697c1 139 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 107 2.5E-16 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS13135 4e2bd225c3c901a51d5ba6766f0d233d 627 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 40 624 2.2E-211 T 06-07-2017 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 CDO28_RS13135 4e2bd225c3c901a51d5ba6766f0d233d 627 Gene3D G3DSA:3.40.390.10 409 453 8.0E-5 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 CDO28_RS13135 4e2bd225c3c901a51d5ba6766f0d233d 627 Pfam PF01432 Peptidase family M3 231 611 4.5E-40 T 06-07-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 CDO28_RS13135 4e2bd225c3c901a51d5ba6766f0d233d 627 SUPERFAMILY SSF55486 31 608 2.81E-114 T 06-07-2017 CDO28_RS13135 4e2bd225c3c901a51d5ba6766f0d233d 627 Pfam PF08439 Oligopeptidase F 147 216 4.9E-16 T 06-07-2017 IPR013647 Oligopeptidase F, N-terminal domain CDO28_RS03265 e22578e1ca16e342194c76eee5e4cf6a 179 SUPERFAMILY SSF160379 1 177 3.27E-43 T 06-07-2017 CDO28_RS03265 e22578e1ca16e342194c76eee5e4cf6a 179 PIRSF PIRSF008502 1 179 7.6E-45 T 06-07-2017 IPR012545 Protein of unknown function DUF1697 CDO28_RS03265 e22578e1ca16e342194c76eee5e4cf6a 179 Gene3D G3DSA:3.30.70.1280 1 87 5.6E-21 T 06-07-2017 CDO28_RS03265 e22578e1ca16e342194c76eee5e4cf6a 179 Pfam PF08002 Protein of unknown function (DUF1697) 1 138 2.8E-33 T 06-07-2017 IPR012545 Protein of unknown function DUF1697 CDO28_RS11635 4e3fa82f5fc5043ab5e4157b507ab979 97 Pfam PF02325 YGGT family 10 87 3.5E-20 T 06-07-2017 IPR003425 CCB3/YggT GO:0016020 CDO28_RS12280 1520b77fe90f19a8cda5758a0d9899dd 302 Gene3D G3DSA:3.20.20.150 8 278 2.1E-36 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12280 1520b77fe90f19a8cda5758a0d9899dd 302 SUPERFAMILY SSF51658 19 292 1.7E-39 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS12280 1520b77fe90f19a8cda5758a0d9899dd 302 Pfam PF01261 Xylose isomerase-like TIM barrel 25 252 7.0E-29 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS03190 5daba5fec66f2b0a44df65924f3153e6 161 Pfam PF03840 Preprotein translocase SecG subunit 4 69 1.8E-17 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDO28_RS03190 5daba5fec66f2b0a44df65924f3153e6 161 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 7.4E-10 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDO28_RS03190 5daba5fec66f2b0a44df65924f3153e6 161 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 7.4E-10 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDO28_RS03190 5daba5fec66f2b0a44df65924f3153e6 161 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 69 7.2E-19 T 06-07-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDO28_RS14060 b19a894b7ea642da849296250bb651a5 248 Pfam PF13489 Methyltransferase domain 60 215 1.2E-21 T 06-07-2017 CDO28_RS14060 b19a894b7ea642da849296250bb651a5 248 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 13 241 1.7E-89 T 06-07-2017 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CDO28_RS14060 b19a894b7ea642da849296250bb651a5 248 SUPERFAMILY SSF53335 15 245 1.02E-44 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14060 b19a894b7ea642da849296250bb651a5 248 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 247 40.33 T 06-07-2017 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CDO28_RS14060 b19a894b7ea642da849296250bb651a5 248 Gene3D G3DSA:3.40.50.150 24 233 1.0E-43 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26885 b8034297b055ac1d6ebf44fe888163a5 404 Gene3D G3DSA:1.20.1250.20 222 400 1.5E-14 T 06-07-2017 CDO28_RS26885 b8034297b055ac1d6ebf44fe888163a5 404 SUPERFAMILY SSF103473 10 399 2.7E-30 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS26885 b8034297b055ac1d6ebf44fe888163a5 404 Gene3D G3DSA:1.20.1250.20 10 196 1.3E-14 T 06-07-2017 CDO28_RS17130 c67eca8de2d334316411416710d273da 301 Pfam PF13704 Glycosyl transferase family 2 25 121 6.3E-25 T 06-07-2017 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 364 387 - T 06-07-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 SMART SM01228 538 609 2.9E-34 T 06-07-2017 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 Pfam PF01134 Glucose inhibited division protein A 5 392 4.6E-162 T 06-07-2017 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 269 283 - T 06-07-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 Pfam PF13932 GidA associated domain 399 607 1.6E-62 T 06-07-2017 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 SUPERFAMILY SSF51905 2 63 1.43E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 SUPERFAMILY SSF51905 94 257 1.43E-43 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 Gene3D G3DSA:3.50.50.60 1 170 2.7E-35 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 616 40.678 T 06-07-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 CDO28_RS10655 006061a19a39b8ada0eba4893d6f4d50 623 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 614 1.5E-242 T 06-07-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 CDO28_RS11745 393eee62475971f2eab91584c667bdd2 434 Gene3D G3DSA:3.40.190.10 49 171 2.5E-18 T 06-07-2017 CDO28_RS11745 393eee62475971f2eab91584c667bdd2 434 SUPERFAMILY SSF53850 34 424 3.88E-63 T 06-07-2017 CDO28_RS11745 393eee62475971f2eab91584c667bdd2 434 Gene3D G3DSA:3.40.190.10 172 364 2.6E-32 T 06-07-2017 CDO28_RS11745 393eee62475971f2eab91584c667bdd2 434 Pfam PF13416 Bacterial extracellular solute-binding protein 57 370 1.5E-34 T 06-07-2017 CDO28_RS06555 076ee09278efdf4d4b606dfdfb00dfa1 448 SUPERFAMILY SSF111283 10 448 3.27E-115 T 06-07-2017 CDO28_RS06555 076ee09278efdf4d4b606dfdfb00dfa1 448 Pfam PF01523 Putative modulator of DNA gyrase 29 317 2.7E-46 T 06-07-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 CDO28_RS15390 9e9895372fb79c3bb2c702e959eba5a4 306 Pfam PF01882 Protein of unknown function DUF58 54 140 1.1E-16 T 06-07-2017 IPR002881 Domain of unknown function DUF58 CDO28_RS18825 3bb0b95a07bb79499b8ad2475d44e7a2 180 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 94 152 3.9E-19 T 06-07-2017 IPR018637 Domain of unknown function DUF2059 CDO28_RS19985 104c2cad6e76c6d61b23369f18924102 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 300 2.9E-10 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19985 104c2cad6e76c6d61b23369f18924102 314 Gene3D G3DSA:1.10.3720.10 32 293 1.9E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS19985 104c2cad6e76c6d61b23369f18924102 314 SUPERFAMILY SSF161098 36 301 1.03E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 Gene3D G3DSA:3.40.50.880 4 222 4.8E-59 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 SUPERFAMILY SSF52317 4 195 6.22E-52 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 SUPERFAMILY SSF46689 267 317 8.6E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 SUPERFAMILY SSF46689 216 264 2.83E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 Gene3D G3DSA:1.10.10.60 268 316 1.2E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 SMART SM00342 231 314 9.4E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 Gene3D G3DSA:1.10.10.60 223 267 1.2E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 310 - T 06-07-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 Pfam PF12833 Helix-turn-helix domain 237 315 1.1E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS21575 b8603232a7c1522b4afba9dfec31b7cd 319 Pfam PF01965 DJ-1/PfpI family 4 176 2.0E-26 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS34450 19ccc58cd4a48973852f3ff7bcdb1151 167 Pfam PF13671 AAA domain 2 116 4.4E-9 T 06-07-2017 CDO28_RS34450 19ccc58cd4a48973852f3ff7bcdb1151 167 Gene3D G3DSA:3.40.50.300 1 163 1.5E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34450 19ccc58cd4a48973852f3ff7bcdb1151 167 SUPERFAMILY SSF52540 1 162 6.32E-19 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26100 8e9b645c053597a420e0f93cebc7dacb 376 Gene3D G3DSA:3.40.190.10 242 310 4.7E-5 T 06-07-2017 CDO28_RS26100 8e9b645c053597a420e0f93cebc7dacb 376 Gene3D G3DSA:3.40.190.10 5 141 4.7E-9 T 06-07-2017 CDO28_RS26100 8e9b645c053597a420e0f93cebc7dacb 376 Pfam PF13416 Bacterial extracellular solute-binding protein 26 315 3.8E-9 T 06-07-2017 CDO28_RS26100 8e9b645c053597a420e0f93cebc7dacb 376 SUPERFAMILY SSF53850 4 367 2.11E-29 T 06-07-2017 CDO28_RS11110 cda7c637d7c7911c5b41cb13b349a8f4 248 Pfam PF01925 Sulfite exporter TauE/SafE 9 243 5.7E-41 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS33790 57f1dfe877f9112618ad7fba13bb2582 69 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 29 60 5.8E-8 T 06-07-2017 IPR018738 Protein of unknown function DUF2280 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 9.4E-16 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.7E-53 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS11995 698292be05e282ee30c88214961103bb 254 SMART SM01134 72 233 2.8E-71 T 06-07-2017 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.3E-8 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.3E-8 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 SUPERFAMILY SSF100950 75 233 5.15E-28 T 06-07-2017 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 Gene3D G3DSA:3.30.750.70 75 174 1.2E-15 T 06-07-2017 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 SUPERFAMILY SSF46785 3 72 2.12E-11 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11995 698292be05e282ee30c88214961103bb 254 SMART SM00420 6 58 2.1E-14 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS11995 698292be05e282ee30c88214961103bb 254 Gene3D G3DSA:1.10.10.10 1 55 4.7E-8 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04035 1155524b23008a7f7b0127e3f3bc14a3 121 SUPERFAMILY SSF88723 3 110 2.27E-24 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS04035 1155524b23008a7f7b0127e3f3bc14a3 121 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 117 10.483 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS04035 1155524b23008a7f7b0127e3f3bc14a3 121 Pfam PF01850 PIN domain 5 106 3.9E-12 T 06-07-2017 IPR002716 PIN domain CDO28_RS04035 1155524b23008a7f7b0127e3f3bc14a3 121 Gene3D G3DSA:3.40.50.1010 4 109 1.1E-22 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS15835 44b27d7f8f3f629f8b6b51385357cd78 437 Pfam PF10091 Putative glucoamylase 181 414 1.2E-67 T 06-07-2017 IPR019282 Domain of unknown function DUF2329 CDO28_RS15835 44b27d7f8f3f629f8b6b51385357cd78 437 PIRSF PIRSF028431 1 437 7.5E-181 T 06-07-2017 IPR016883 Uncharacterised conserved protein UCP028431 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 1.6E-25 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 SMART SM00357 3 69 6.6E-28 T 06-07-2017 IPR011129 Cold shock protein GO:0003676 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 SUPERFAMILY SSF50249 3 68 1.56E-22 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 PIRSF PIRSF002599 1 69 1.4E-21 T 06-07-2017 IPR012156 Cold shock, CspA GO:0003676 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 06-07-2017 IPR019844 Cold-shock conserved site CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 Gene3D G3DSA:2.40.50.140 3 67 8.3E-27 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 PRINTS PR00050 Cold shock protein signature 4 19 7.3E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 PRINTS PR00050 Cold shock protein signature 25 34 7.3E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS16740 f454da734d3855843c82a679f0ee3f1a 69 PRINTS PR00050 Cold shock protein signature 40 58 7.3E-14 T 06-07-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDO28_RS24760 712c4bf5bf724916f17919881f2a84b3 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 119 6.6E-35 T 06-07-2017 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24760 712c4bf5bf724916f17919881f2a84b3 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 120 19.453 T 06-07-2017 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 392 1.3E-9 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 Gene3D G3DSA:1.10.3720.10 87 164 1.3E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 Gene3D G3DSA:1.10.3720.10 190 392 2.8E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 88 151 5.9E-15 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 SUPERFAMILY SSF161098 89 158 1.7E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS02990 62b258e3dc790e8293b57f4f313627b9 397 SUPERFAMILY SSF161098 191 378 9.16E-27 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13335 18ed65378162e5ee82fa3b714fd03abe 274 Gene3D G3DSA:3.60.21.30 1 273 4.8E-109 T 06-07-2017 CDO28_RS13335 18ed65378162e5ee82fa3b714fd03abe 274 SUPERFAMILY SSF56300 1 261 1.4E-79 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS13335 18ed65378162e5ee82fa3b714fd03abe 274 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 261 2.2E-76 T 06-07-2017 IPR005235 Metallophosphoesterase, YmdB-like CDO28_RS13335 18ed65378162e5ee82fa3b714fd03abe 274 PIRSF PIRSF004789 1 265 7.9E-83 T 06-07-2017 IPR005235 Metallophosphoesterase, YmdB-like CDO28_RS13335 18ed65378162e5ee82fa3b714fd03abe 274 Pfam PF13277 YmdB-like protein 4 258 6.3E-98 T 06-07-2017 IPR005235 Metallophosphoesterase, YmdB-like CDO28_RS17340 e4c51d61d94631531a0862c79981e818 219 Gene3D G3DSA:3.40.430.10 3 193 5.1E-22 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS17340 e4c51d61d94631531a0862c79981e818 219 Pfam PF01872 RibD C-terminal domain 2 187 5.7E-24 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS17340 e4c51d61d94631531a0862c79981e818 219 SUPERFAMILY SSF53597 2 193 3.8E-23 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS19805 3564ac2c3c13ede3f41f493bf06bee82 217 Pfam PF00857 Isochorismatase family 16 166 8.7E-27 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS19805 3564ac2c3c13ede3f41f493bf06bee82 217 Gene3D G3DSA:3.40.50.850 10 200 1.3E-43 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS19805 3564ac2c3c13ede3f41f493bf06bee82 217 SUPERFAMILY SSF52499 8 202 1.57E-46 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS04305 981063bc18737330f1d35b8641d5c0a5 417 Gene3D G3DSA:3.40.630.30 182 345 8.0E-7 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS04305 981063bc18737330f1d35b8641d5c0a5 417 Pfam PF13480 Acetyltransferase (GNAT) domain 199 353 6.2E-38 T 06-07-2017 CDO28_RS04305 981063bc18737330f1d35b8641d5c0a5 417 SUPERFAMILY SSF55729 190 372 9.0E-21 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 SUPERFAMILY SSF53335 63 249 4.24E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 Pfam PF01728 FtsJ-like methyltransferase 65 247 1.1E-20 T 06-07-2017 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 PIRSF PIRSF005578 4 251 6.0E-88 T 06-07-2017 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 Pfam PF01479 S4 domain 10 48 2.2E-9 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 Gene3D G3DSA:3.40.50.150 95 203 3.1E-5 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 10 243 1.3E-55 T 06-07-2017 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 SMART SM00363 9 74 3.0E-9 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 Gene3D G3DSA:3.10.290.10 10 94 1.6E-19 T 06-07-2017 IPR002942 RNA-binding S4 domain GO:0003723 CDO28_RS06180 b8b5e3dcdd196763c7145b51068c33d5 251 SUPERFAMILY SSF55174 8 60 6.18E-12 T 06-07-2017 CDO28_RS15100 be0a7c212eadecf780b5b694b77ca437 104 SUPERFAMILY SSF54909 1 101 8.82E-28 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS15100 be0a7c212eadecf780b5b694b77ca437 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 80 4.6E-22 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain CDO28_RS15100 be0a7c212eadecf780b5b694b77ca437 104 Gene3D G3DSA:3.30.70.900 1 102 4.0E-32 T 06-07-2017 CDO28_RS28665 04d1452b5d75b1141bad6b066a22ddad 155 Pfam PF13115 YtkA-like 48 134 7.1E-20 T 06-07-2017 IPR032693 YtkA-like domain CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 ProSitePatterns PS00894 DeoR-type HTH domain signature. 10 44 - T 06-07-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 SUPERFAMILY SSF100950 79 226 8.06E-19 T 06-07-2017 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 SMART SM01134 75 236 5.7E-48 T 06-07-2017 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 SUPERFAMILY SSF46785 7 63 4.68E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 Pfam PF08220 DeoR-like helix-turn-helix domain 10 60 3.8E-12 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 SMART SM00420 10 62 9.7E-8 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 Pfam PF00455 DeoR C terminal sensor domain 78 233 4.3E-36 T 06-07-2017 IPR014036 DeoR C-terminal sensor domain CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 Gene3D G3DSA:3.40.50.1360 79 218 3.4E-7 T 06-07-2017 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 Gene3D G3DSA:1.10.10.10 5 56 2.3E-7 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 1.5E-7 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS10975 a4f98901f8092e0e3569a58bd5e60278 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 1.5E-7 T 06-07-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 SUPERFAMILY SSF51556 57 354 2.72E-92 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 Gene3D G3DSA:2.30.40.10 342 382 7.0E-5 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 Gene3D G3DSA:2.30.40.10 6 62 3.3E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 380 5.8E-90 T 06-07-2017 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 Pfam PF01979 Amidohydrolase family 54 383 7.0E-23 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 PIRSF PIRSF038994 4 386 1.2E-105 T 06-07-2017 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 Gene3D G3DSA:3.20.20.140 63 341 7.7E-90 T 06-07-2017 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 SUPERFAMILY SSF51338 354 385 4.13E-16 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS09590 da842d1acfd8144e111cf58012e1bd18 386 SUPERFAMILY SSF51338 4 56 4.13E-16 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20990 a6abdd48fb75a75f9676aab2cfa6873c 139 Gene3D G3DSA:3.40.50.1010 1 136 5.9E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS20990 a6abdd48fb75a75f9676aab2cfa6873c 139 Pfam PF01850 PIN domain 2 123 4.9E-14 T 06-07-2017 IPR002716 PIN domain CDO28_RS20990 a6abdd48fb75a75f9676aab2cfa6873c 139 SUPERFAMILY SSF88723 1 137 1.32E-28 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS20990 a6abdd48fb75a75f9676aab2cfa6873c 139 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 135 10.645 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS11600 fb546d4a9c9b5985c4a0197d33d4543f 435 SUPERFAMILY SSF75304 8 432 2.88E-102 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS11600 fb546d4a9c9b5985c4a0197d33d4543f 435 Gene3D G3DSA:3.90.1300.10 9 433 3.6E-104 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS11600 fb546d4a9c9b5985c4a0197d33d4543f 435 Pfam PF01425 Amidase 12 422 3.6E-77 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS24745 a9b1046a112707f0638bf35de788023e 404 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 19 404 7.6E-191 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24745 a9b1046a112707f0638bf35de788023e 404 SUPERFAMILY SSF56762 29 403 4.19E-137 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24745 a9b1046a112707f0638bf35de788023e 404 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 133 404 1.2E-116 T 06-07-2017 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24745 a9b1046a112707f0638bf35de788023e 404 Gene3D G3DSA:1.10.645.10 13 397 1.6E-66 T 06-07-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24745 a9b1046a112707f0638bf35de788023e 404 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 11 404 49.663 T 06-07-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24480 fe97fd1e947901e73694438763995917 372 Gene3D G3DSA:3.40.50.2300 48 192 1.2E-27 T 06-07-2017 CDO28_RS24480 fe97fd1e947901e73694438763995917 372 Pfam PF13407 Periplasmic binding protein domain 51 315 5.5E-34 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS24480 fe97fd1e947901e73694438763995917 372 Gene3D G3DSA:3.40.50.2300 193 315 7.1E-25 T 06-07-2017 CDO28_RS24480 fe97fd1e947901e73694438763995917 372 SUPERFAMILY SSF53822 50 345 1.96E-50 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS09565 a87d3fdf4de041e5abac79187c5019c7 244 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 9 214 2.1E-24 T 06-07-2017 CDO28_RS34675 7b9d9596fc65314e40cdef9042922409 159 SUPERFAMILY SSF52206 38 105 1.14E-9 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS34675 7b9d9596fc65314e40cdef9042922409 159 Gene3D G3DSA:3.40.50.9200 50 103 4.1E-7 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS34675 7b9d9596fc65314e40cdef9042922409 159 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 104 2.4E-22 T 06-07-2017 IPR015032 MTH538 TIR-like domain CDO28_RS25770 dd950576b665cddc2c4aeec5f44e935d 344 SUPERFAMILY SSF81345 9 342 6.8E-70 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25770 dd950576b665cddc2c4aeec5f44e935d 344 Gene3D G3DSA:1.10.3470.10 11 342 1.6E-84 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25770 dd950576b665cddc2c4aeec5f44e935d 344 Pfam PF01032 FecCD transport family 22 342 1.6E-83 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS09660 77ca9c21f01dbf8678196de6473c18db 254 SUPERFAMILY SSF69572 9 250 1.11E-82 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS09660 77ca9c21f01dbf8678196de6473c18db 254 Pfam PF00899 ThiF family 15 252 5.7E-61 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS09660 77ca9c21f01dbf8678196de6473c18db 254 Gene3D G3DSA:3.40.50.720 11 251 1.1E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29565 03b7bedcb381a384360e1ecd67edb241 158 Gene3D G3DSA:3.10.180.10 1 130 1.4E-39 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS29565 03b7bedcb381a384360e1ecd67edb241 158 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 118 6.0E-44 T 06-07-2017 IPR028973 PhnB-like CDO28_RS29565 03b7bedcb381a384360e1ecd67edb241 158 PIRSF PIRSF021700 1 158 1.3E-61 T 06-07-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase CDO28_RS29565 03b7bedcb381a384360e1ecd67edb241 158 SUPERFAMILY SSF54593 3 156 7.74E-46 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS32955 d92523418cc0970cbfb7c624e424888d 192 Gene3D G3DSA:3.40.50.850 1 189 8.5E-34 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS32955 d92523418cc0970cbfb7c624e424888d 192 Pfam PF00857 Isochorismatase family 8 179 2.9E-32 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS32955 d92523418cc0970cbfb7c624e424888d 192 SUPERFAMILY SSF52499 2 190 8.63E-41 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS21120 1ca6279d0129c24b7bdfc1b04404917f 160 PIRSF PIRSF006092 11 160 3.5E-22 T 06-07-2017 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CDO28_RS21120 1ca6279d0129c24b7bdfc1b04404917f 160 Gene3D G3DSA:3.10.50.30 87 159 3.1E-23 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS21120 1ca6279d0129c24b7bdfc1b04404917f 160 SUPERFAMILY SSF54534 92 158 3.01E-16 T 06-07-2017 CDO28_RS21120 1ca6279d0129c24b7bdfc1b04404917f 160 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 93 159 6.3E-21 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS09225 b6e7eaadb2ce36fb0089f336df066148 150 Pfam PF07681 DoxX 30 107 7.1E-14 T 06-07-2017 IPR032808 DoxX family CDO28_RS04230 cd54ca84e2ca2ce6af04da01a5285a79 113 SUPERFAMILY SSF51182 18 111 2.18E-19 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS04230 cd54ca84e2ca2ce6af04da01a5285a79 113 Gene3D G3DSA:2.60.120.10 18 112 1.8E-34 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS04230 cd54ca84e2ca2ce6af04da01a5285a79 113 Pfam PF05899 Protein of unknown function (DUF861) 38 109 3.6E-26 T 06-07-2017 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 CDO28_RS23405 54d31b805b3b03aa4e186883636e1877 411 SUPERFAMILY SSF56300 26 139 9.21E-21 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS23405 54d31b805b3b03aa4e186883636e1877 411 SUPERFAMILY SSF56300 225 363 9.21E-21 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS23405 54d31b805b3b03aa4e186883636e1877 411 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 6 318 1.4E-61 T 06-07-2017 IPR019079 Capsule synthesis protein, CapA CDO28_RS23405 54d31b805b3b03aa4e186883636e1877 411 SMART SM00854 6 319 6.1E-43 T 06-07-2017 IPR019079 Capsule synthesis protein, CapA CDO28_RS08825 3bb9dc64a80d2ccf69cb045de07c2d3f 298 Pfam PF00892 EamA-like transporter family 153 284 6.3E-21 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08825 3bb9dc64a80d2ccf69cb045de07c2d3f 298 Pfam PF00892 EamA-like transporter family 7 140 2.0E-19 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08825 3bb9dc64a80d2ccf69cb045de07c2d3f 298 SUPERFAMILY SSF103481 193 289 3.4E-14 T 06-07-2017 CDO28_RS08825 3bb9dc64a80d2ccf69cb045de07c2d3f 298 SUPERFAMILY SSF103481 40 143 3.4E-15 T 06-07-2017 CDO28_RS30020 453848560294e449f1ac823f4fa373d8 156 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 14 155 3.1E-47 T 06-07-2017 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 CDO28_RS30020 453848560294e449f1ac823f4fa373d8 156 Pfam PF06754 Phosphonate metabolism protein PhnG 15 154 2.1E-49 T 06-07-2017 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 CDO28_RS32775 710903b188ee7102314c69c34519527c 392 Gene3D G3DSA:3.40.50.150 140 367 1.7E-33 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS32775 710903b188ee7102314c69c34519527c 392 Pfam PF01209 ubiE/COQ5 methyltransferase family 140 267 1.5E-17 T 06-07-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDO28_RS32775 710903b188ee7102314c69c34519527c 392 SUPERFAMILY SSF53335 133 386 5.68E-35 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 6.3E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 6.3E-8 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 Gene3D G3DSA:3.30.565.10 312 459 3.0E-24 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 SMART SM00387 345 461 6.1E-19 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 SUPERFAMILY SSF55874 311 460 4.85E-23 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS05445 f3109e6184602f07ae93b90d5664b043 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 459 1.5E-11 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 Gene3D G3DSA:3.30.420.40 4 232 6.3E-26 T 06-07-2017 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 232 1.9E-17 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 SUPERFAMILY SSF53067 239 422 2.76E-21 T 06-07-2017 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 244 418 1.2E-10 T 06-07-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 PIRSF PIRSF000538 5 425 1.4E-47 T 06-07-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 SUPERFAMILY SSF53067 6 232 1.47E-33 T 06-07-2017 CDO28_RS16105 8bc2232c2782fdafd7ff196fc79f632f 427 Gene3D G3DSA:3.30.420.40 239 421 4.2E-10 T 06-07-2017 CDO28_RS17090 62e9f533a150875a26261b2d6ec31fc5 147 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 23 146 8.1E-41 T 06-07-2017 IPR013423 Conserved hypothetical protein CHP02594 CDO28_RS17090 62e9f533a150875a26261b2d6ec31fc5 147 Gene3D G3DSA:3.90.1720.10 57 138 3.2E-6 T 06-07-2017 IPR000064 Endopeptidase, NLPC/P60 domain CDO28_RS17985 63fd4ed3e3efdb5d7e2a765461db56cf 75 Pfam PF13817 IS66 C-terminal element 25 62 5.7E-20 T 06-07-2017 CDO28_RS30330 43e5c3c1971c3c79dcd20e60e8e06185 236 SUPERFAMILY SSF54427 96 196 1.26E-10 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS30330 43e5c3c1971c3c79dcd20e60e8e06185 236 Pfam PF13577 SnoaL-like domain 95 193 2.2E-6 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS30330 43e5c3c1971c3c79dcd20e60e8e06185 236 Gene3D G3DSA:3.10.450.50 95 160 4.1E-8 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS03215 61a2fc45c9b8444aa89020578bdcc021 294 SUPERFAMILY SSF53474 101 288 1.01E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS03215 61a2fc45c9b8444aa89020578bdcc021 294 Gene3D G3DSA:3.40.50.1820 99 292 5.5E-19 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00840 a071c915d89d560158d9dc60a6bf007c 325 PIRSF PIRSF006470 1 322 2.0E-99 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS00840 a071c915d89d560158d9dc60a6bf007c 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 26 279 1.2E-86 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS00840 a071c915d89d560158d9dc60a6bf007c 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 26 304 8.9E-90 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 99 110 1.1E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 1.1E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 1.1E-12 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 Gene3D G3DSA:3.40.50.720 18 265 5.5E-87 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 33 265 4.5E-62 T 06-07-2017 CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 SUPERFAMILY SSF51735 23 265 7.54E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 25 42 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 110 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 210 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 162 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 191 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 248 4.5E-42 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 159 187 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS29755 c792bb68b6423dbc12a43e36c2bb0634 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 24 193 6.7E-4 T 06-07-2017 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 SUPERFAMILY SSF54373 241 334 3.92E-8 T 06-07-2017 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 Gene3D G3DSA:3.50.50.60 12 253 9.5E-41 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 21 38 - T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 Pfam PF01266 FAD dependent oxidoreductase 17 338 2.4E-52 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 SUPERFAMILY SSF51905 327 374 8.1E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 SUPERFAMILY SSF51905 15 274 8.1E-36 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 90 102 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 362 374 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 29 39 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 16 28 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 45 57 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 328 334 2.2E-29 T 06-07-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS16095 d724f1cf3caf10bc91c0e88740ca9dc1 512 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 396 499 1.7E-10 T 06-07-2017 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 CDO28_RS07035 737873275271c3092867f507cac7adc7 604 Pfam PF13502 AsmA-like C-terminal region 389 574 2.7E-19 T 06-07-2017 IPR032712 AsmA-like, C-terminal CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 PIRSF PIRSF005539 3 303 1.2E-125 T 06-07-2017 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 Gene3D G3DSA:3.40.50.1820 10 299 3.2E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 SUPERFAMILY SSF53474 13 296 4.57E-51 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 8 296 5.8E-76 T 06-07-2017 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 Pfam PF00561 alpha/beta hydrolase fold 32 284 5.9E-18 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 33 41 5.5E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 107 121 5.5E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS13045 d1527affbd00eae9f13d3947aeba9ae2 303 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 61 72 5.5E-10 T 06-07-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CDO28_RS16300 415196e6feb2e8028c4d9b14e3a667cb 416 SUPERFAMILY SSF53335 53 139 5.28E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16300 415196e6feb2e8028c4d9b14e3a667cb 416 Pfam PF11899 Protein of unknown function (DUF3419) 37 414 9.1E-112 T 06-07-2017 IPR021829 Protein of unknown function DUF3419 CDO28_RS16300 415196e6feb2e8028c4d9b14e3a667cb 416 Gene3D G3DSA:3.40.50.150 58 109 2.7E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS16300 415196e6feb2e8028c4d9b14e3a667cb 416 Gene3D G3DSA:3.40.50.150 306 377 2.7E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26460 ed7b873d5b5971010cfe8ffdf83dd07f 283 Gene3D G3DSA:3.40.50.150 165 243 1.6E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26460 ed7b873d5b5971010cfe8ffdf83dd07f 283 Gene3D G3DSA:3.40.50.150 53 96 1.6E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26460 ed7b873d5b5971010cfe8ffdf83dd07f 283 SUPERFAMILY SSF53335 49 101 3.5E-7 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS26460 ed7b873d5b5971010cfe8ffdf83dd07f 283 SUPERFAMILY SSF53335 176 248 3.5E-7 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 Pfam PF00294 pfkB family carbohydrate kinase 161 262 1.1E-20 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 Pfam PF00294 pfkB family carbohydrate kinase 23 97 9.1E-13 T 06-07-2017 IPR011611 Carbohydrate kinase PfkB CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 220 233 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 27 51 - T 06-07-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 Gene3D G3DSA:3.40.1190.20 6 266 6.6E-43 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS12320 da183c60310217f3d24d4eedc4fda961 270 SUPERFAMILY SSF53613 1 267 8.26E-48 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 Pfam PF01266 FAD dependent oxidoreductase 4 347 3.1E-36 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 SUPERFAMILY SSF51905 1 289 8.42E-27 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 Gene3D G3DSA:3.50.50.60 1 90 6.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 Gene3D G3DSA:3.50.50.60 143 209 6.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 Gene3D G3DSA:3.50.50.60 314 366 6.9E-29 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS28635 4d245f548588c968d1759b9c2d2a1059 376 Gene3D G3DSA:3.30.9.10 210 311 7.6E-11 T 06-07-2017 CDO28_RS23100 5431b14c537d63a5d3ac237a060c49a8 93 Pfam PF00550 Phosphopantetheine attachment site 32 79 1.1E-7 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS23100 5431b14c537d63a5d3ac237a060c49a8 93 SUPERFAMILY SSF47336 30 90 1.96E-9 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS23100 5431b14c537d63a5d3ac237a060c49a8 93 ProSitePatterns PS00012 Phosphopantetheine attachment site. 41 56 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS23100 5431b14c537d63a5d3ac237a060c49a8 93 Gene3D G3DSA:1.10.1200.10 2 92 1.1E-24 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS08405 9d774748146b958e95ee4089191e81a2 271 Pfam PF07859 alpha/beta hydrolase fold 34 231 6.8E-50 T 06-07-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CDO28_RS08405 9d774748146b958e95ee4089191e81a2 271 SUPERFAMILY SSF53474 15 244 1.29E-46 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS08405 9d774748146b958e95ee4089191e81a2 271 Gene3D G3DSA:3.40.50.1820 4 231 3.9E-56 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS08405 9d774748146b958e95ee4089191e81a2 271 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 34 50 - T 06-07-2017 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 Reactome: R-HSA-163560 CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 SUPERFAMILY SSF52821 163 284 4.58E-32 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 Pfam PF00581 Rhodanese-like domain 168 275 4.7E-8 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 Pfam PF00581 Rhodanese-like domain 14 134 1.5E-19 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 ProSitePatterns PS00380 Rhodanese signature 1. 47 58 - T 06-07-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 Gene3D G3DSA:3.40.250.10 156 284 1.4E-38 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 Gene3D G3DSA:3.40.250.10 10 152 4.1E-50 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 SMART SM00450 160 280 1.2E-12 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 SMART SM00450 13 137 5.1E-23 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS01730 1b621ca6eeff9065cda455dce718be98 287 SUPERFAMILY SSF52821 11 158 7.2E-47 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS25235 cf517901744cb5120fcba67d743605a5 466 Pfam PF00860 Permease family 38 425 9.1E-33 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS31800 c763e8dcfd4efb07221cf913d5bec73c 368 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 276 2.1E-52 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS31800 c763e8dcfd4efb07221cf913d5bec73c 368 SUPERFAMILY SSF51735 1 125 6.21E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31800 c763e8dcfd4efb07221cf913d5bec73c 368 SUPERFAMILY SSF51735 161 349 6.21E-86 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31800 c763e8dcfd4efb07221cf913d5bec73c 368 Gene3D G3DSA:3.40.50.720 3 341 1.5E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24930 1fc7cb8582ed612634fb022e3f31e73b 129 SUPERFAMILY SSF54427 5 127 7.58E-25 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS24930 1fc7cb8582ed612634fb022e3f31e73b 129 Gene3D G3DSA:3.10.450.50 7 127 7.9E-14 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS24930 1fc7cb8582ed612634fb022e3f31e73b 129 Pfam PF07366 SnoaL-like polyketide cyclase 7 127 1.1E-34 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS28060 fbf3ec1d77cf301658bf122181d82ffd 118 Gene3D G3DSA:3.30.479.10 1 117 2.2E-38 T 06-07-2017 CDO28_RS28060 fbf3ec1d77cf301658bf122181d82ffd 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 95 4.8E-29 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CDO28_RS28060 fbf3ec1d77cf301658bf122181d82ffd 118 PIRSF PIRSF006113 1 118 4.1E-26 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CDO28_RS28060 fbf3ec1d77cf301658bf122181d82ffd 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 117 3.1E-32 T 06-07-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CDO28_RS28060 fbf3ec1d77cf301658bf122181d82ffd 118 SUPERFAMILY SSF55620 1 117 7.78E-36 T 06-07-2017 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 SUPERFAMILY SSF55103 192 443 3.27E-26 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 Pfam PF02913 FAD linked oxidases, C-terminal domain 218 460 8.1E-20 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 Pfam PF01565 FAD binding domain 41 178 4.3E-28 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 SUPERFAMILY SSF56176 5 218 9.0E-57 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 Gene3D G3DSA:3.30.465.10 100 218 3.5E-32 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS10910 b835a8cf639b276a3aa83d1bb651ae95 473 Gene3D G3DSA:3.30.43.10 3 95 3.2E-20 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS18630 5a33999416f85d0363ea1ff9889c4531 116 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 40 1.0E-6 T 06-07-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDO28_RS18630 5a33999416f85d0363ea1ff9889c4531 116 SUPERFAMILY SSF51735 3 67 1.61E-6 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18630 5a33999416f85d0363ea1ff9889c4531 116 Gene3D G3DSA:3.40.50.720 3 115 5.8E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 Pfam PF00005 ABC transporter 20 170 2.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 Pfam PF00005 ABC transporter 271 426 6.8E-12 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 SUPERFAMILY SSF52540 270 478 2.09E-29 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 SUPERFAMILY SSF52540 4 228 3.4E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 Gene3D G3DSA:3.40.50.300 270 483 2.6E-30 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 Gene3D G3DSA:3.40.50.300 3 229 3.6E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 SMART SM00382 29 217 1.5E-5 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS19290 79a1961edf2acea0e539c11deeb85059 497 SMART SM00382 278 474 15.0 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS31410 1be1020597fb5d2f418d3ddd7cdafa69 120 Gene3D G3DSA:1.10.10.10 32 106 5.3E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS31410 1be1020597fb5d2f418d3ddd7cdafa69 120 Pfam PF01418 Helix-turn-helix domain, rpiR family 34 103 3.0E-11 T 06-07-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CDO28_RS31410 1be1020597fb5d2f418d3ddd7cdafa69 120 SUPERFAMILY SSF46689 33 106 2.69E-15 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS10670 94c5aaad4afd180c07a5b4d862a608c0 296 Gene3D G3DSA:3.90.1530.10 39 135 1.8E-40 T 06-07-2017 CDO28_RS10670 94c5aaad4afd180c07a5b4d862a608c0 296 SUPERFAMILY SSF110849 41 175 1.46E-33 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS10670 94c5aaad4afd180c07a5b4d862a608c0 296 SMART SM00470 39 129 1.1E-33 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS10670 94c5aaad4afd180c07a5b4d862a608c0 296 Pfam PF02195 ParB-like nuclease domain 41 128 1.8E-25 T 06-07-2017 IPR003115 ParB/Sulfiredoxin CDO28_RS10670 94c5aaad4afd180c07a5b4d862a608c0 296 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 39 201 3.9E-55 T 06-07-2017 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 SUPERFAMILY SSF52540 327 553 1.49E-61 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 SMART SM00382 359 549 2.7E-14 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 SMART SM00382 39 220 5.0E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 Gene3D G3DSA:3.40.50.300 328 554 6.4E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 Gene3D G3DSA:3.40.50.300 10 234 6.2E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 Pfam PF00005 ABC transporter 30 172 4.0E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 Pfam PF00005 ABC transporter 351 494 1.1E-24 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS27095 0a664d98606689cf1197cae92c1ea5ae 582 SUPERFAMILY SSF52540 13 234 7.48E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18200 50243439952e3c69e09dcf17d2641ffd 115 Pfam PF05717 IS66 Orf2 like protein 9 105 1.7E-37 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS07335 4fe61d5afee9dbf101e2fad69522edb0 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 136 8.3E-44 T 06-07-2017 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 CDO28_RS07335 4fe61d5afee9dbf101e2fad69522edb0 139 Pfam PF00460 Flagella basal body rod protein 8 32 1.0E-5 T 06-07-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CDO28_RS07335 4fe61d5afee9dbf101e2fad69522edb0 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 89 134 2.4E-9 T 06-07-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CDO28_RS07335 4fe61d5afee9dbf101e2fad69522edb0 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 06-07-2017 IPR019776 Flagellar basal body rod protein, conserved site CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 SMART SM00062 24 253 6.3E-66 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 Gene3D G3DSA:3.40.190.10 115 209 1.4E-21 T 06-07-2017 CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 Gene3D G3DSA:3.40.190.10 212 255 5.2E-48 T 06-07-2017 CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 Gene3D G3DSA:3.40.190.10 22 110 5.2E-48 T 06-07-2017 CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 47 60 - T 06-07-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 SUPERFAMILY SSF53850 1 253 7.67E-71 T 06-07-2017 CDO28_RS29825 ac2154d573a1a0d40521172fc38fbc47 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 251 9.9E-64 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS19890 08ffbc1d75a82f272bc78ac834aba718 91 Gene3D G3DSA:1.10.1220.10 17 51 1.4E-7 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS19890 08ffbc1d75a82f272bc78ac834aba718 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 15 79 4.7E-15 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS19890 08ffbc1d75a82f272bc78ac834aba718 91 SUPERFAMILY SSF47598 13 54 5.11E-11 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS19890 08ffbc1d75a82f272bc78ac834aba718 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 18 84 1.4E-8 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS19655 08ffbc1d75a82f272bc78ac834aba718 91 Gene3D G3DSA:1.10.1220.10 17 51 1.4E-7 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS19655 08ffbc1d75a82f272bc78ac834aba718 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 15 79 4.7E-15 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS19655 08ffbc1d75a82f272bc78ac834aba718 91 SUPERFAMILY SSF47598 13 54 5.11E-11 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS19655 08ffbc1d75a82f272bc78ac834aba718 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 18 84 1.4E-8 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS20180 31e3e97815b99fb7aa6f8d6a70073a8d 333 SUPERFAMILY SSF56349 8 303 2.21E-48 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS20180 31e3e97815b99fb7aa6f8d6a70073a8d 333 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 15 98 4.9E-14 T 06-07-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDO28_RS20180 31e3e97815b99fb7aa6f8d6a70073a8d 333 Gene3D G3DSA:1.10.443.10 126 304 8.4E-42 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20180 31e3e97815b99fb7aa6f8d6a70073a8d 333 Gene3D G3DSA:1.10.150.130 15 101 5.8E-12 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS20180 31e3e97815b99fb7aa6f8d6a70073a8d 333 Pfam PF00589 Phage integrase family 126 297 1.8E-32 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 SUPERFAMILY SSF117892 52 186 6.02E-43 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 SMART SM00244 21 179 1.4E-55 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 Pfam PF01145 SPFH domain / Band 7 family 25 194 3.7E-35 T 06-07-2017 IPR001107 Band 7 domain CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 155 173 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 28 50 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 76 97 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 111 128 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 131 154 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS13095 eca89e1450964273d34d6e0c39ceeee4 328 PRINTS PR00721 Stomatin signature 174 195 2.6E-32 T 06-07-2017 IPR001972 Stomatin family GO:0016020 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.2E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.2E-11 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 8.0E-18 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 SUPERFAMILY SSF48498 78 183 1.27E-9 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 Gene3D G3DSA:1.10.357.10 56 184 7.7E-10 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 SUPERFAMILY SSF46689 2 75 1.1E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25955 24c2737aee3b40578bb9733f5699b0e2 206 Gene3D G3DSA:1.10.10.60 2 55 2.9E-21 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 Gene3D G3DSA:3.40.50.720 8 118 8.8E-22 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 50 307 6.0E-18 T 06-07-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 Gene3D G3DSA:3.40.50.720 119 284 1.5E-48 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 283 3.7E-46 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 SUPERFAMILY SSF51735 104 284 1.36E-46 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31165 a8e20add6b63281b9fa2db8329e6f4a9 310 SUPERFAMILY SSF52283 21 139 2.08E-23 T 06-07-2017 CDO28_RS15915 eb87e433563d4ab3688dede9350023e5 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 256 8.1E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15915 eb87e433563d4ab3688dede9350023e5 271 Gene3D G3DSA:1.10.3720.10 14 262 3.1E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15915 eb87e433563d4ab3688dede9350023e5 271 SUPERFAMILY SSF161098 11 263 6.15E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16025 d6f4056316a2d4338e4272aac515a03e 272 Gene3D G3DSA:1.10.3720.10 5 269 5.8E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16025 d6f4056316a2d4338e4272aac515a03e 272 SUPERFAMILY SSF161098 8 258 1.0E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16025 d6f4056316a2d4338e4272aac515a03e 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 263 8.5E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29505 877eac1beb83395b8ce37ed1ea6aaea9 87 SUPERFAMILY SSF55229 33 82 2.35E-13 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 CDO28_RS29505 877eac1beb83395b8ce37ed1ea6aaea9 87 Pfam PF03776 Septum formation topological specificity factor MinE 12 79 4.8E-21 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 CDO28_RS29505 877eac1beb83395b8ce37ed1ea6aaea9 87 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 82 15.774 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 CDO28_RS29505 877eac1beb83395b8ce37ed1ea6aaea9 87 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 79 3.0E-21 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 CDO28_RS29505 877eac1beb83395b8ce37ed1ea6aaea9 87 Gene3D G3DSA:3.30.1070.10 33 80 7.7E-16 T 06-07-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 CDO28_RS25945 db334cda84f411fba96e4077225eb28b 302 SUPERFAMILY SSF51735 1 295 8.2E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25945 db334cda84f411fba96e4077225eb28b 302 Gene3D G3DSA:3.40.50.720 1 245 1.5E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25945 db334cda84f411fba96e4077225eb28b 302 Pfam PF13460 NAD(P)H-binding 7 175 3.3E-11 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02795 88f4ec9aebd40542c648e834ff7f13af 456 SUPERFAMILY SSF56954 6 422 6.28E-86 T 06-07-2017 CDO28_RS02795 88f4ec9aebd40542c648e834ff7f13af 456 Pfam PF02321 Outer membrane efflux protein 33 209 5.7E-31 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 CDO28_RS02795 88f4ec9aebd40542c648e834ff7f13af 456 Pfam PF02321 Outer membrane efflux protein 236 420 4.3E-26 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 CDO28_RS02795 88f4ec9aebd40542c648e834ff7f13af 456 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 27 434 4.5E-103 T 06-07-2017 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 CDO28_RS02795 88f4ec9aebd40542c648e834ff7f13af 456 Gene3D G3DSA:1.20.1600.10 33 422 4.4E-75 T 06-07-2017 CDO28_RS19510 49622a4823828e638f1e70c08b8d704e 499 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 4.9E-143 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS18270 50d8e1d1ed34fc2d7efa3e32e7649fba 517 Gene3D G3DSA:3.10.105.10 293 484 1.7E-36 T 06-07-2017 CDO28_RS18270 50d8e1d1ed34fc2d7efa3e32e7649fba 517 Gene3D G3DSA:3.40.190.10 150 292 7.6E-35 T 06-07-2017 CDO28_RS18270 50d8e1d1ed34fc2d7efa3e32e7649fba 517 PIRSF PIRSF002741 14 516 2.1E-72 T 06-07-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDO28_RS18270 50d8e1d1ed34fc2d7efa3e32e7649fba 517 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 436 2.6E-68 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS18270 50d8e1d1ed34fc2d7efa3e32e7649fba 517 SUPERFAMILY SSF53850 55 504 3.51E-109 T 06-07-2017 CDO28_RS14695 18485e7b8c3e34a5a3a0e5ca112e5a5b 359 Gene3D G3DSA:3.40.190.10 162 303 1.6E-29 T 06-07-2017 CDO28_RS14695 18485e7b8c3e34a5a3a0e5ca112e5a5b 359 Pfam PF13416 Bacterial extracellular solute-binding protein 53 315 2.8E-29 T 06-07-2017 CDO28_RS14695 18485e7b8c3e34a5a3a0e5ca112e5a5b 359 Gene3D G3DSA:3.40.190.10 33 161 1.4E-20 T 06-07-2017 CDO28_RS14695 18485e7b8c3e34a5a3a0e5ca112e5a5b 359 SUPERFAMILY SSF53850 32 359 1.35E-57 T 06-07-2017 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 1.0E-90 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 8.3E-101 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 Gene3D G3DSA:3.20.20.70 1 291 1.9E-115 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 SMART SM01130 1 289 1.2E-147 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 37 54 - T 06-07-2017 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 7.4E-33 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 7.4E-33 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 7.4E-33 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 127 144 7.4E-33 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 SUPERFAMILY SSF51569 2 289 2.83E-103 T 06-07-2017 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 63.475 T 06-07-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 PIRSF PIRSF001365 1 291 1.7E-91 T 06-07-2017 IPR002220 DapA-like GO:0008152|GO:0016829 CDO28_RS22295 c0bfc961063e4270fd700ef36e3aee63 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 132 163 - T 06-07-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDO28_RS29800 24fc08255d4fe39e943f4e1d70ec6bad 250 Pfam PF13460 NAD(P)H-binding 7 174 2.3E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29800 24fc08255d4fe39e943f4e1d70ec6bad 250 Gene3D G3DSA:3.40.50.720 1 204 4.0E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29800 24fc08255d4fe39e943f4e1d70ec6bad 250 SUPERFAMILY SSF51735 1 211 1.11E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24665 09f7bb955d69adafc12a093a1cbb1e65 215 Gene3D G3DSA:1.20.1050.10 82 203 7.8E-26 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS24665 09f7bb955d69adafc12a093a1cbb1e65 215 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 7.0E-16 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS24665 09f7bb955d69adafc12a093a1cbb1e65 215 SUPERFAMILY SSF47616 80 200 1.95E-18 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS24665 09f7bb955d69adafc12a093a1cbb1e65 215 SUPERFAMILY SSF52833 1 86 1.02E-22 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS24665 09f7bb955d69adafc12a093a1cbb1e65 215 Gene3D G3DSA:3.40.30.10 1 81 2.2E-23 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS25010 333d088866654bd2e48c0c4fcbfaf7c5 106 Pfam PF12680 SnoaL-like domain 10 102 2.8E-12 T 06-07-2017 IPR009959 Polyketide cyclase SnoaL-like domain CDO28_RS25010 333d088866654bd2e48c0c4fcbfaf7c5 106 SUPERFAMILY SSF54427 2 103 3.27E-17 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS25010 333d088866654bd2e48c0c4fcbfaf7c5 106 Gene3D G3DSA:3.10.450.50 5 105 1.8E-14 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 Gene3D G3DSA:3.40.309.10 260 447 1.5E-64 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 SUPERFAMILY SSF53720 3 473 1.96E-158 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 Gene3D G3DSA:3.40.605.10 4 259 6.0E-90 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS28705 9261cec5e30d4c374e3f87f71803968a 477 Pfam PF00171 Aldehyde dehydrogenase family 16 472 3.9E-162 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS13290 ee39969eb4ebcd886cc43e5b8b812808 196 SUPERFAMILY SSF159275 5 191 1.7E-61 T 06-07-2017 CDO28_RS13290 ee39969eb4ebcd886cc43e5b8b812808 196 Pfam PF06475 Putative glycolipid-binding 9 190 4.2E-60 T 06-07-2017 IPR009467 Putative glycolipid-binding protein CDO28_RS34010 357e6911196e0329143487a3d56d5222 295 PIRSF PIRSF037112 1 295 4.8E-108 T 06-07-2017 IPR017113 Antirestriction, ArdC CDO28_RS34010 357e6911196e0329143487a3d56d5222 295 Pfam PF08401 Domain of unknown function (DUF1738) 6 120 1.8E-36 T 06-07-2017 IPR013610 Domain of unknown function DUF1738 CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 PIRSF PIRSF006429 2 441 3.0E-152 T 06-07-2017 IPR024188 Glutamate synthase large subunit-like protein CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 Pfam PF01645 Conserved region in glutamate synthase 356 404 2.4E-6 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 Pfam PF01645 Conserved region in glutamate synthase 80 332 2.6E-74 T 06-07-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 PIRSF PIRSF500061 3 441 3.5E-169 T 06-07-2017 CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 Gene3D G3DSA:3.20.20.70 20 441 1.5E-117 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS10155 a0749984f4a16d5dcf45c532f9b2ac14 442 SUPERFAMILY SSF51395 23 439 6.96E-89 T 06-07-2017 CDO28_RS02280 7906bf2377b1b3a3d14d52a84ce1014d 467 Pfam PF01554 MatE 256 421 1.0E-24 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS02280 7906bf2377b1b3a3d14d52a84ce1014d 467 Pfam PF01554 MatE 30 189 4.3E-32 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS02280 7906bf2377b1b3a3d14d52a84ce1014d 467 TIGRFAM TIGR00797 matE: MATE efflux family protein 30 435 1.9E-81 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS02280 7906bf2377b1b3a3d14d52a84ce1014d 467 PIRSF PIRSF006603 22 464 4.6E-62 T 06-07-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDO28_RS01935 f80502f8f5c950814f4aad5f5d879b76 137 Pfam PF13554 Bacteriophage related domain of unknown function 8 133 3.7E-9 T 06-07-2017 IPR025395 Protein of unknown function DUF4128 CDO28_RS25570 56f2f6f943b8a50f7185dc34db90499a 96 Pfam PF07235 Protein of unknown function (DUF1427) 2 82 1.0E-40 T 06-07-2017 IPR009872 Protein of unknown function DUF1427 CDO28_RS25570 56f2f6f943b8a50f7185dc34db90499a 96 TIGRFAM TIGR03510 XapX: XapX domain 4 49 2.4E-21 T 06-07-2017 IPR020017 XapX domain CDO28_RS21005 111baad47b9c311f394a92599baa8fa4 120 Gene3D G3DSA:3.40.50.2300 3 117 7.2E-21 T 06-07-2017 CDO28_RS21005 111baad47b9c311f394a92599baa8fa4 120 SMART SM00448 6 113 1.0E-9 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21005 111baad47b9c311f394a92599baa8fa4 120 Pfam PF00072 Response regulator receiver domain 8 109 1.3E-10 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21005 111baad47b9c311f394a92599baa8fa4 120 SUPERFAMILY SSF52172 5 117 4.7E-22 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 SUPERFAMILY SSF51556 52 371 1.28E-102 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 SUPERFAMILY SSF51338 362 404 6.7E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 SUPERFAMILY SSF51338 1 52 6.7E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 Gene3D G3DSA:2.30.40.10 1 57 4.6E-15 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 Gene3D G3DSA:3.20.20.140 58 362 5.7E-107 T 06-07-2017 CDO28_RS20610 7726c509c4804f60a150dd0b5c3164eb 432 Pfam PF07969 Amidohydrolase family 40 400 1.3E-47 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS28645 5d6d11fb8709a2b8373edff84e266605 150 Pfam PF10116 Protein required for attachment to host cells 6 140 2.6E-35 T 06-07-2017 IPR019291 Host attachment protein CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 SUPERFAMILY SSF48008 152 289 1.05E-14 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 SMART SM00895 154 282 3.0E-12 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Pfam PF07729 FCD domain 154 281 5.4E-15 T 06-07-2017 IPR011711 GntR, C-terminal CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 60 1.6E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Pfam PF00392 Bacterial regulatory proteins, gntR family 82 140 2.0E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Gene3D G3DSA:1.20.120.530 149 291 5.2E-15 T 06-07-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Gene3D G3DSA:1.10.10.10 20 70 3.5E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 SUPERFAMILY SSF46785 20 69 1.95E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 SUPERFAMILY SSF46785 78 148 3.04E-9 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 Gene3D G3DSA:1.10.10.10 74 143 6.7E-12 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 3.2E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS10555 467a593a7d7fc3e02afa7537d34346a0 292 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 3.2E-5 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS20190 49b3aa0b1322529fe0f28ec57322a567 413 SUPERFAMILY SSF56349 223 404 5.3E-39 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS20190 49b3aa0b1322529fe0f28ec57322a567 413 Gene3D G3DSA:1.10.443.10 226 403 2.0E-35 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20190 49b3aa0b1322529fe0f28ec57322a567 413 Pfam PF00589 Phage integrase family 226 396 1.4E-27 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS20190 49b3aa0b1322529fe0f28ec57322a567 413 Gene3D G3DSA:1.10.150.130 119 206 9.7E-5 T 06-07-2017 IPR023109 Integrase/recombinase, N-terminal CDO28_RS15740 1c7cfff01f5fa01c5f42fd66704d95df 208 SUPERFAMILY SSF56436 26 185 6.28E-36 T 06-07-2017 IPR016187 C-type lectin fold CDO28_RS15740 1c7cfff01f5fa01c5f42fd66704d95df 208 Gene3D G3DSA:3.10.100.10 26 207 3.3E-32 T 06-07-2017 IPR016186 C-type lectin-like CDO28_RS02645 34f2faecb43135949a624a92e8fb17b6 47 Pfam PF06568 Domain of unknown function (DUF1127) 5 39 8.8E-15 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS33840 ea1caeaa0200787a4cc25cbf94aab489 343 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 301 2.1E-45 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 Gene3D G3DSA:3.40.50.300 410 505 7.8E-6 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 Pfam PF02463 RecF/RecN/SMC N terminal domain 14 504 5.4E-15 T 06-07-2017 IPR003395 RecF/RecN/SMC, N-terminal CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 8.2E-147 T 06-07-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 SUPERFAMILY SSF52540 4 50 1.0E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 SUPERFAMILY SSF52540 283 506 1.0E-28 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 SUPERFAMILY SSF52540 1 217 7.27E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 PIRSF PIRSF003128 1 556 3.4E-161 T 06-07-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CDO28_RS16450 2e6bcfb9b39abc5e43fff9087a2417cf 557 Gene3D G3DSA:3.40.50.300 1 206 2.0E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SMART SM00471 41 153 9.4E-8 T 06-07-2017 IPR003607 HD/PDEase domain CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 737 3.6E-198 T 06-07-2017 IPR004811 RelA/SpoT family GO:0015969 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Pfam PF13328 HD domain 26 175 1.8E-48 T 06-07-2017 IPR003607 HD/PDEase domain CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Pfam PF04607 Region found in RelA / SpoT proteins 236 345 1.1E-34 T 06-07-2017 IPR007685 RelA/SpoT GO:0015969 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SUPERFAMILY SSF81271 380 452 1.13E-20 T 06-07-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Pfam PF13291 ACT domain 661 738 1.1E-18 T 06-07-2017 IPR002912 ACT domain GO:0008152|GO:0016597 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Gene3D G3DSA:3.10.20.30 392 452 4.0E-21 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SUPERFAMILY SSF109604 5 190 5.96E-69 T 06-07-2017 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SUPERFAMILY SSF55021 662 739 4.58E-10 T 06-07-2017 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SMART SM00954 236 346 7.5E-56 T 06-07-2017 IPR007685 RelA/SpoT GO:0015969 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Gene3D G3DSA:3.30.460.10 192 326 2.0E-44 T 06-07-2017 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Gene3D G3DSA:3.30.70.260 664 735 3.1E-10 T 06-07-2017 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 Pfam PF02824 TGS domain 394 451 1.1E-19 T 06-07-2017 IPR004095 TGS KEGG: 00970+6.1.1.3 CDO28_RS05185 f55a4e03e18cb4eb3e9949150622034d 741 SUPERFAMILY SSF81301 181 397 5.56E-56 T 06-07-2017 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 Pfam PF01047 MarR family 37 88 3.2E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 1.6E-9 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.6E-9 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.6E-9 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 Gene3D G3DSA:1.10.10.10 5 136 8.9E-34 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 SMART SM00347 24 124 7.0E-21 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS04175 3e35b5d5675d3db158de5bcd607e1871 157 SUPERFAMILY SSF46785 6 142 4.36E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 52 4.3E-9 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 Gene3D G3DSA:3.10.20.30 2 74 9.3E-29 T 06-07-2017 IPR012675 Beta-grasp domain CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 SUPERFAMILY SSF54292 3 78 7.21E-25 T 06-07-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 06-07-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 SUPERFAMILY SSF47741 73 152 1.57E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 Pfam PF01799 [2Fe-2S] binding domain 73 144 7.7E-25 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS23825 e224dfc609cf86a1388ef98fe683933e 156 Gene3D G3DSA:1.10.150.120 75 153 1.5E-27 T 06-07-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 CDO28_RS01875 cb93b07ff04a0deddfbb1b5d710d7372 118 Pfam PF01844 HNH endonuclease 60 108 5.7E-7 T 06-07-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 CDO28_RS01875 cb93b07ff04a0deddfbb1b5d710d7372 118 SMART SM00507 47 105 2.3E-6 T 06-07-2017 IPR003615 HNH nuclease CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 Pfam PF00171 Aldehyde dehydrogenase family 25 479 5.7E-137 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 TIGRFAM TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase 10 484 8.3E-258 T 06-07-2017 IPR017656 Putative phosphonoacetaldehyde dehydrogenase CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 Gene3D G3DSA:3.40.309.10 270 455 2.5E-48 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 SUPERFAMILY SSF53720 9 483 3.93E-125 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 Gene3D G3DSA:3.40.605.10 14 269 8.8E-67 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS27625 0c74f20b5dd8782be322156a581538b0 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 Gene3D G3DSA:1.10.10.10 123 224 4.0E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 Pfam PF00072 Response regulator receiver domain 3 112 2.3E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 SMART SM00448 1 112 2.2E-38 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 SMART SM00862 145 221 1.2E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 SUPERFAMILY SSF52172 1 174 3.42E-38 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 6.3E-20 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS13530 c627edd84c0ca3fb0f6da6250b2f85bd 233 Gene3D G3DSA:3.40.50.2300 1 122 4.2E-35 T 06-07-2017 CDO28_RS14715 6a1d1caf479d9c157a4173dcf15e0d4f 259 Pfam PF00795 Carbon-nitrogen hydrolase 5 241 1.9E-42 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS14715 6a1d1caf479d9c157a4173dcf15e0d4f 259 Gene3D G3DSA:3.60.110.10 1 254 1.3E-68 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS14715 6a1d1caf479d9c157a4173dcf15e0d4f 259 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 140 160 - T 06-07-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site CDO28_RS14715 6a1d1caf479d9c157a4173dcf15e0d4f 259 SUPERFAMILY SSF56317 2 255 7.33E-66 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS06785 555c12879fb7ad9fc7d82ce97c1d0353 138 SUPERFAMILY SSF161084 7 129 1.14E-18 T 06-07-2017 CDO28_RS06785 555c12879fb7ad9fc7d82ce97c1d0353 138 Gene3D G3DSA:1.20.120.550 26 132 3.7E-10 T 06-07-2017 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain CDO28_RS06785 555c12879fb7ad9fc7d82ce97c1d0353 138 Pfam PF01124 MAPEG family 8 130 7.3E-18 T 06-07-2017 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 256 1.7E-56 T 06-07-2017 CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 SUPERFAMILY SSF51735 3 257 8.63E-77 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 3 258 5.3E-124 T 06-07-2017 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 Gene3D G3DSA:3.40.50.720 3 257 3.6E-79 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.5E-41 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.8E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.8E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS28440 1d84c5268352564f79417b2dfa774e3b 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 9.8E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS22810 b2aaa243fbcefd8b086defc53d5edc5b 48 SUPERFAMILY SSF46689 9 48 5.91E-7 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS22810 b2aaa243fbcefd8b086defc53d5edc5b 48 Pfam PF01527 Transposase 10 48 1.9E-9 T 06-07-2017 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDO28_RS22810 b2aaa243fbcefd8b086defc53d5edc5b 48 Gene3D G3DSA:1.10.10.60 16 46 5.3E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25555 5b7af69b0165065d576e4feb4244ce9c 530 Pfam PF05977 Transmembrane secretion effector 8 529 9.4E-229 T 06-07-2017 IPR010290 Transmembrane secretion effector CDO28_RS25555 5b7af69b0165065d576e4feb4244ce9c 530 SUPERFAMILY SSF103473 15 402 3.66E-45 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS25555 5b7af69b0165065d576e4feb4244ce9c 530 Gene3D G3DSA:1.20.1250.20 225 404 2.4E-13 T 06-07-2017 CDO28_RS25555 5b7af69b0165065d576e4feb4244ce9c 530 Gene3D G3DSA:1.20.1250.20 15 198 6.3E-19 T 06-07-2017 CDO28_RS31490 8c83cc08ee2a795f73ec0deb226a978f 181 SUPERFAMILY SSF52821 46 177 1.83E-20 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS31490 8c83cc08ee2a795f73ec0deb226a978f 181 Gene3D G3DSA:3.40.250.10 45 173 6.0E-14 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS31490 8c83cc08ee2a795f73ec0deb226a978f 181 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 11 176 4.5E-74 T 06-07-2017 IPR022376 PQQ-dependent catabolism-associated CXXCW motif CDO28_RS31490 8c83cc08ee2a795f73ec0deb226a978f 181 Pfam PF00581 Rhodanese-like domain 89 166 1.7E-4 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS32540 b937139cc6ad934e63e8bb2529e55f68 410 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 247 339 5.4E-11 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS32540 b937139cc6ad934e63e8bb2529e55f68 410 Gene3D G3DSA:2.40.50.100 44 75 2.7E-6 T 06-07-2017 CDO28_RS32540 b937139cc6ad934e63e8bb2529e55f68 410 Gene3D G3DSA:2.40.50.100 263 294 2.7E-6 T 06-07-2017 CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 Pfam PF00271 Helicase conserved C-terminal domain 267 367 2.0E-14 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 Pfam PF08494 DEAD/H associated 620 809 3.9E-49 T 06-07-2017 IPR013701 DEAD/H associated GO:0005524|GO:0016818 CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 Gene3D G3DSA:3.40.50.300 17 211 9.3E-38 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 Gene3D G3DSA:3.40.50.300 266 388 1.8E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 SMART SM00490 287 372 3.7E-15 T 06-07-2017 IPR001650 Helicase, C-terminal CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 PIRSF PIRSF037307 12 844 1.7E-215 T 06-07-2017 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 Pfam PF00270 DEAD/DEAH box helicase 37 211 8.5E-24 T 06-07-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 SMART SM00487 30 236 1.0E-25 T 06-07-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 23 837 0.0 T 06-07-2017 IPR026362 DEXH box helicase, DNA ligase-associated CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 SUPERFAMILY SSF52540 240 380 2.25E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS07870 fa42cd3e7a7f461ec12a8004ae372dea 849 SUPERFAMILY SSF52540 45 212 2.25E-46 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34640 cae9005e07fe0e71dd9c5ad26433bf2c 119 Gene3D G3DSA:3.10.180.10 11 117 2.8E-14 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS34640 cae9005e07fe0e71dd9c5ad26433bf2c 119 SUPERFAMILY SSF54593 3 117 3.3E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS27845 5c081deeaa7a9e2e936e7b3154ca2104 148 Pfam PF09335 SNARE associated Golgi protein 30 136 1.1E-10 T 06-07-2017 IPR032816 SNARE associated Golgi protein CDO28_RS27845 5c081deeaa7a9e2e936e7b3154ca2104 148 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 1 134 0.005 T 06-07-2017 IPR020143 Uncharacterised protein family, RP436 CDO28_RS28250 4d84e6aa5a35b484c7c2cfe54440963a 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 358 544 1.1E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28250 4d84e6aa5a35b484c7c2cfe54440963a 549 Gene3D G3DSA:1.10.3720.10 351 545 1.3E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28250 4d84e6aa5a35b484c7c2cfe54440963a 549 SUPERFAMILY SSF161098 353 530 9.16E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS00310 b67dc8db21ece73db6b55e0f4cd4f800 671 Pfam PF13515 Fusaric acid resistance protein-like 369 494 4.9E-14 T 06-07-2017 CDO28_RS08495 0d56db7a1b0e0ccd2423b2b21b04f93f 531 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 13 501 20.855 T 06-07-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CDO28_RS08495 0d56db7a1b0e0ccd2423b2b21b04f93f 531 SUPERFAMILY SSF56317 234 488 1.83E-39 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS08495 0d56db7a1b0e0ccd2423b2b21b04f93f 531 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 76 473 6.8E-120 T 06-07-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CDO28_RS08495 0d56db7a1b0e0ccd2423b2b21b04f93f 531 Pfam PF00795 Carbon-nitrogen hydrolase 242 487 4.9E-29 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS08495 0d56db7a1b0e0ccd2423b2b21b04f93f 531 Gene3D G3DSA:3.60.110.10 233 486 4.4E-28 T 06-07-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 Gene3D G3DSA:1.10.357.10 12 199 3.9E-36 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 SUPERFAMILY SSF48498 80 201 1.4E-24 T 06-07-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 9.9E-12 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 4.3E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 4.3E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 SUPERFAMILY SSF46689 6 79 6.16E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 61 - T 06-07-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CDO28_RS07750 4282130c00197e85a0c9d52bd4dacaa8 204 Pfam PF13977 Bacterial transcriptional repressor 83 198 4.2E-20 T 06-07-2017 CDO28_RS04640 7a57e5338a4058e74c028c0b173066d8 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 9 80 1.2E-17 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS04640 7a57e5338a4058e74c028c0b173066d8 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 192 2.5E-46 T 06-07-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 CDO28_RS04640 7a57e5338a4058e74c028c0b173066d8 195 PIRSF PIRSF000847 4 195 1.6E-46 T 06-07-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 CDO28_RS04640 7a57e5338a4058e74c028c0b173066d8 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 58 80 - T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS28225 e5aabb278efe6eb0cac07f47a845473f 319 Gene3D G3DSA:1.10.3720.10 19 297 2.8E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28225 e5aabb278efe6eb0cac07f47a845473f 319 SUPERFAMILY SSF161098 68 294 1.03E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS28225 e5aabb278efe6eb0cac07f47a845473f 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 299 8.3E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03360 127dae4d1e4e755b806e594345b41651 466 Pfam PF03315 Serine dehydratase beta chain 4 161 4.9E-53 T 06-07-2017 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CDO28_RS03360 127dae4d1e4e755b806e594345b41651 466 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 463 5.9E-188 T 06-07-2017 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CDO28_RS03360 127dae4d1e4e755b806e594345b41651 466 Pfam PF03313 Serine dehydratase alpha chain 195 460 1.2E-102 T 06-07-2017 IPR005130 Serine dehydratase-like, alpha subunit CDO28_RS03360 127dae4d1e4e755b806e594345b41651 466 SUPERFAMILY SSF143548 17 163 1.57E-42 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CDO28_RS03360 127dae4d1e4e755b806e594345b41651 466 Gene3D G3DSA:3.30.1330.90 11 163 3.4E-49 T 06-07-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CDO28_RS28145 51a1167f46032fc703f9947a965d014f 370 Pfam PF01757 Acyltransferase family 8 322 4.8E-21 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 CDO28_RS22905 3e07bb40b9f22864a21e098c1a046dcc 291 Gene3D G3DSA:1.10.3720.10 26 279 5.7E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22905 3e07bb40b9f22864a21e098c1a046dcc 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 276 7.4E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22905 3e07bb40b9f22864a21e098c1a046dcc 291 SUPERFAMILY SSF161098 26 289 1.96E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS08355 f35ab180b014b2fcc4ea2cd5a36e6735 256 SUPERFAMILY SSF51621 6 253 2.6E-58 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS08355 f35ab180b014b2fcc4ea2cd5a36e6735 256 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 252 1.8E-76 T 06-07-2017 CDO28_RS08355 f35ab180b014b2fcc4ea2cd5a36e6735 256 Gene3D G3DSA:3.20.20.60 2 234 4.1E-62 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 Gene3D G3DSA:3.20.20.70 20 324 8.7E-74 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 Pfam PF13353 4Fe-4S single cluster domain 37 128 2.7E-10 T 06-07-2017 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 SUPERFAMILY SSF102114 20 294 7.59E-75 T 06-07-2017 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 36 47 - T 06-07-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 21 349 1.3E-111 T 06-07-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 Pfam PF04055 Radical SAM superfamily 34 196 1.9E-28 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 SMART SM00729 30 234 3.5E-4 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 21 349 39.209 T 06-07-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS18780 47426764a0e19a974d2b4623f59bc9ba 349 Pfam PF06463 Molybdenum Cofactor Synthesis C 202 328 2.2E-40 T 06-07-2017 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDO28_RS13975 6f057b86415b4e6e874a686f26ab1eee 94 Pfam PF08681 Protein of unknown function (DUF1778) 15 78 3.1E-18 T 06-07-2017 IPR014795 Vibrio phage ICP1, Orf50 CDO28_RS13975 6f057b86415b4e6e874a686f26ab1eee 94 SUPERFAMILY SSF47598 12 79 1.39E-18 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS13975 6f057b86415b4e6e874a686f26ab1eee 94 Gene3D G3DSA:1.20.5.780 14 78 2.1E-14 T 06-07-2017 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 SMART SM00422 10 78 1.3E-24 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 SUPERFAMILY SSF46955 10 131 7.33E-30 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 Gene3D G3DSA:1.10.1660.10 10 63 1.1E-22 T 06-07-2017 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 Gene3D G3DSA:1.10.1660.10 64 132 1.7E-23 T 06-07-2017 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 22 35 1.2E-19 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 11 22 1.2E-19 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 1.2E-19 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS21515 4d16f6f882a38b06332e045b2a9e8ab0 134 Pfam PF13411 MerR HTH family regulatory protein 11 75 3.1E-17 T 06-07-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDO28_RS19535 51c0b8ca9a06bdf886346a81825eff4d 210 Pfam PF01810 LysE type translocator 16 208 3.6E-29 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS19535 51c0b8ca9a06bdf886346a81825eff4d 210 PIRSF PIRSF006324 1 210 4.3E-54 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS22775 e6f9db9d6a49e7bfe9a7c5ef2a9eba91 50 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 2 50 3.3E-20 T 06-07-2017 IPR008621 Cbb3-type cytochrome oxidase component CDO28_RS22590 e6f9db9d6a49e7bfe9a7c5ef2a9eba91 50 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 2 50 3.3E-20 T 06-07-2017 IPR008621 Cbb3-type cytochrome oxidase component CDO28_RS33810 a338fa8a1ff001f5f600b75ef6717034 522 PIRSF PIRSF016636 1 522 6.0E-117 T 06-07-2017 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CDO28_RS33810 a338fa8a1ff001f5f600b75ef6717034 522 PIRSF PIRSF500217 1 522 1.1E-118 T 06-07-2017 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 CDO28_RS33810 a338fa8a1ff001f5f600b75ef6717034 522 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 378 6.0E-14 T 06-07-2017 IPR004299 Membrane bound O-acyl transferase, MBOAT CDO28_RS02560 a752ee3e961b9bdbae8ed82e734a88f6 186 SUPERFAMILY SSF88723 6 143 7.01E-16 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS02560 a752ee3e961b9bdbae8ed82e734a88f6 186 Pfam PF01850 PIN domain 8 144 1.3E-6 T 06-07-2017 IPR002716 PIN domain CDO28_RS02560 a752ee3e961b9bdbae8ed82e734a88f6 186 Gene3D G3DSA:3.40.50.1010 7 144 2.8E-10 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS04780 b12b71aae76c3b2eed07d65867290a65 399 Pfam PF02618 YceG-like family 94 368 5.9E-85 T 06-07-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like CDO28_RS04780 b12b71aae76c3b2eed07d65867290a65 399 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 194 370 3.3E-62 T 06-07-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like CDO28_RS04780 b12b71aae76c3b2eed07d65867290a65 399 Gene3D G3DSA:3.30.160.60 344 377 6.0E-19 T 06-07-2017 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 CDO28_RS11905 995039675d11fa50bd66bd127a7a80be 367 SUPERFAMILY SSF55347 123 365 2.62E-67 T 06-07-2017 CDO28_RS11905 995039675d11fa50bd66bd127a7a80be 367 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 122 345 2.2E-19 T 06-07-2017 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 CDO28_RS11905 995039675d11fa50bd66bd127a7a80be 367 Gene3D G3DSA:3.40.50.720 1 169 1.9E-33 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11905 995039675d11fa50bd66bd127a7a80be 367 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 108 3.5E-21 T 06-07-2017 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 CDO28_RS11905 995039675d11fa50bd66bd127a7a80be 367 SUPERFAMILY SSF51735 1 172 9.04E-24 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS04895 230f5bf359f6de19e0381a36ca54e454 289 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 83 105 - T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS04895 230f5bf359f6de19e0381a36ca54e454 289 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 227 262 8.6E-11 T 06-07-2017 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal CDO28_RS04895 230f5bf359f6de19e0381a36ca54e454 289 Pfam PF01066 CDP-alcohol phosphatidyltransferase 42 105 7.1E-14 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS04895 230f5bf359f6de19e0381a36ca54e454 289 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 47 212 3.7E-32 T 06-07-2017 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 CDO28_RS04910 ed01d608ae28860f4a7eae9897c11cd0 569 SMART SM00257 501 550 0.0037 T 06-07-2017 IPR018392 LysM domain CDO28_RS04910 ed01d608ae28860f4a7eae9897c11cd0 569 Pfam PF01476 LysM domain 503 547 1.3E-7 T 06-07-2017 IPR018392 LysM domain CDO28_RS04910 ed01d608ae28860f4a7eae9897c11cd0 569 Gene3D G3DSA:3.10.350.10 504 550 1.0E-5 T 06-07-2017 IPR018392 LysM domain CDO28_RS25175 3788253f8b7b556b11d9910b55f479cd 41 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 2 40 2.9E-8 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS19140 d2c5fc13e109717843797b1c639de3fa 177 Pfam PF06776 Invasion associated locus B (IalB) protein 42 172 1.8E-34 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS10165 f02ef96f9a354c3cda6b1bb6b95bef67 301 SUPERFAMILY SSF56235 116 298 7.02E-48 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10165 f02ef96f9a354c3cda6b1bb6b95bef67 301 SUPERFAMILY SSF56235 2 44 7.02E-48 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10165 f02ef96f9a354c3cda6b1bb6b95bef67 301 Pfam PF13522 Glutamine amidotransferase domain 140 269 8.4E-22 T 06-07-2017 CDO28_RS10165 f02ef96f9a354c3cda6b1bb6b95bef67 301 Gene3D G3DSA:3.60.20.10 115 299 1.3E-57 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS10165 f02ef96f9a354c3cda6b1bb6b95bef67 301 Gene3D G3DSA:3.60.20.10 2 44 1.3E-57 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS24225 1d5b7209993392872d2ddf6fdd7fdc76 319 Gene3D G3DSA:1.10.3720.10 6 71 1.9E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24225 1d5b7209993392872d2ddf6fdd7fdc76 319 Gene3D G3DSA:1.10.3720.10 103 304 1.9E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24225 1d5b7209993392872d2ddf6fdd7fdc76 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 312 1.1E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24225 1d5b7209993392872d2ddf6fdd7fdc76 319 SUPERFAMILY SSF161098 8 318 1.83E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11285 4f6a7fe7f4c4bba8883741055057e632 264 SMART SM00382 31 234 3.5E-7 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11285 4f6a7fe7f4c4bba8883741055057e632 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11285 4f6a7fe7f4c4bba8883741055057e632 264 SUPERFAMILY SSF52540 2 230 4.62E-48 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11285 4f6a7fe7f4c4bba8883741055057e632 264 Gene3D G3DSA:3.40.50.300 1 230 7.5E-53 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11285 4f6a7fe7f4c4bba8883741055057e632 264 Pfam PF00005 ABC transporter 22 177 9.9E-24 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 Pfam PF00034 Cytochrome c 29 123 9.9E-7 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 Gene3D G3DSA:1.10.760.10 26 122 3.6E-29 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 SUPERFAMILY SSF46626 26 123 1.2E-26 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 PRINTS PR00604 Class IA and IB cytochrome C signature 66 76 1.3E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 PRINTS PR00604 Class IA and IB cytochrome C signature 50 65 1.3E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 PRINTS PR00604 Class IA and IB cytochrome C signature 38 45 1.3E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23635 cfe9183801e499354144abf9632ff74d 124 PRINTS PR00604 Class IA and IB cytochrome C signature 80 96 1.3E-11 T 06-07-2017 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 4.2E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 4.2E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 4.2E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 Gene3D G3DSA:1.10.10.10 7 110 1.5E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 SMART SM00418 15 92 1.4E-12 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 SUPERFAMILY SSF46785 11 113 5.96E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18980 01d9a4e94931db9280d96c2d35b529c2 118 Pfam PF12840 Helix-turn-helix domain 16 73 6.7E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS04625 fa416932c959dba07ac069e61f0eb2b4 212 SUPERFAMILY SSF56925 44 212 1.73E-29 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS04625 fa416932c959dba07ac069e61f0eb2b4 212 Pfam PF13505 Outer membrane protein beta-barrel domain 24 212 2.8E-23 T 06-07-2017 IPR027385 Outer membrane protein beta-barrel CDO28_RS04625 fa416932c959dba07ac069e61f0eb2b4 212 Gene3D G3DSA:2.40.160.20 25 212 8.9E-35 T 06-07-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 CDO28_RS05250 147f5a19d19d0ff93c7030e35441978d 98 SUPERFAMILY SSF143011 4 83 1.06E-15 T 06-07-2017 CDO28_RS05250 147f5a19d19d0ff93c7030e35441978d 98 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 95 2.5E-37 T 06-07-2017 IPR007711 Toxin HigB-1 CDO28_RS34310 e39e91573b7369e005f0d7e041f4a502 342 SUPERFAMILY SSF52540 21 325 2.51E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34310 e39e91573b7369e005f0d7e041f4a502 342 Gene3D G3DSA:3.40.50.300 162 319 6.5E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34310 e39e91573b7369e005f0d7e041f4a502 342 Gene3D G3DSA:3.30.450.90 22 120 3.2E-30 T 06-07-2017 CDO28_RS34310 e39e91573b7369e005f0d7e041f4a502 342 Pfam PF00437 Type II/IV secretion system protein 23 326 2.1E-84 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CDO28_RS34310 e39e91573b7369e005f0d7e041f4a502 342 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 29 337 2.8E-106 T 06-07-2017 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 CDO28_RS26465 784b720b1b8ea4170ad5c543d5e8d330 307 Gene3D G3DSA:3.40.50.300 117 246 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26465 784b720b1b8ea4170ad5c543d5e8d330 307 Gene3D G3DSA:3.40.50.300 9 51 1.3E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26465 784b720b1b8ea4170ad5c543d5e8d330 307 SUPERFAMILY SSF52540 119 307 1.97E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26465 784b720b1b8ea4170ad5c543d5e8d330 307 SUPERFAMILY SSF52540 8 81 1.97E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26465 784b720b1b8ea4170ad5c543d5e8d330 307 Pfam PF13469 Sulfotransferase family 11 244 7.0E-14 T 06-07-2017 CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 Gene3D G3DSA:3.20.20.120 126 363 6.3E-63 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 SUPERFAMILY SSF51604 124 374 4.59E-64 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 12 124 2.3E-11 T 06-07-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 SUPERFAMILY SSF54826 4 124 1.35E-25 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 SMART SM00922 154 249 5.2E-10 T 06-07-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 Gene3D G3DSA:3.30.390.10 1 125 7.0E-35 T 06-07-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDO28_RS20830 1dbcd6c67de519b84e1a2b705c32574b 377 Pfam PF13378 Enolase C-terminal domain-like 161 369 3.5E-46 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 Pfam PF00529 HlyD membrane-fusion protein of T1SS 65 338 4.6E-7 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 SUPERFAMILY SSF111369 67 125 7.06E-10 T 06-07-2017 CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 SUPERFAMILY SSF111369 195 303 3.53E-13 T 06-07-2017 CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 309 2.3E-19 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 Gene3D G3DSA:3.40.50.720 1 68 6.7E-4 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 Gene3D G3DSA:2.40.50.100 231 264 2.1E-19 T 06-07-2017 CDO28_RS29790 30a46ee20051c2ab27234c2f96a7d71c 365 Gene3D G3DSA:2.40.50.100 69 100 2.1E-19 T 06-07-2017 CDO28_RS22205 e531436e3297eadad02661ad092e7898 148 Pfam PF05443 ROS/MUCR transcriptional regulator protein 11 132 4.0E-48 T 06-07-2017 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 CDO28_RS25085 d497077c56d9017f3ef5a64dcd0cce71 96 Pfam PF05433 Glycine zipper 2TM domain 31 71 1.2E-5 T 06-07-2017 IPR008816 Glycine zipper 2TM domain GO:0019867 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 06-07-2017 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 Pfam PF13377 Periplasmic binding protein-like domain 167 328 4.2E-36 T 06-07-2017 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 Gene3D G3DSA:3.40.50.2300 171 308 6.2E-50 T 06-07-2017 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 SUPERFAMILY SSF47413 4 62 1.31E-17 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 Gene3D G3DSA:3.40.50.2300 57 170 4.0E-42 T 06-07-2017 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 Gene3D G3DSA:1.10.260.40 5 56 1.0E-23 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 SUPERFAMILY SSF53822 64 331 4.35E-83 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 SMART SM00354 4 74 3.5E-24 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS30645 8fcba051b593dd919c863203a1af3ab4 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 6.9E-17 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 Pfam PF00593 TonB dependent receptor 491 730 1.7E-32 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 180 5.0E-24 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 SUPERFAMILY SSF56935 28 733 1.37E-140 T 06-07-2017 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 730 8.7E-121 T 06-07-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 Gene3D G3DSA:2.170.130.10 31 191 2.0E-41 T 06-07-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 CDO28_RS16145 9234065bc9f8b2009ac09764b21c69e4 733 Gene3D G3DSA:2.40.170.20 196 733 1.8E-140 T 06-07-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Gene3D G3DSA:2.60.40.10 279 368 6.5E-15 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Gene3D G3DSA:2.60.40.10 163 259 3.6E-5 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Gene3D G3DSA:2.60.40.10 51 141 3.7E-6 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 56 135 3.7E-6 T 06-07-2017 IPR018905 Alpha-galactosidase, NEW3 domain CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 281 354 2.2E-20 T 06-07-2017 IPR018905 Alpha-galactosidase, NEW3 domain CDO28_RS21720 98f8fba1962077f2e053c850c87626d4 399 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 171 246 2.0E-6 T 06-07-2017 IPR018905 Alpha-galactosidase, NEW3 domain CDO28_RS01160 6f8e689b91ca7ebc1edce43f44de50c5 109 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 6 104 6.2E-46 T 06-07-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CDO28_RS01160 6f8e689b91ca7ebc1edce43f44de50c5 109 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 6 99 1.0E-28 T 06-07-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CDO28_RS01160 6f8e689b91ca7ebc1edce43f44de50c5 109 SMART SM00992 5 104 1.1E-59 T 06-07-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CDO28_RS01160 6f8e689b91ca7ebc1edce43f44de50c5 109 SUPERFAMILY SSF141255 6 97 1.57E-35 T 06-07-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CDO28_RS27520 8f27e210f2cc2337ca732d9361f2fbee 197 SUPERFAMILY SSF49482 41 194 1.7E-41 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS27520 8f27e210f2cc2337ca732d9361f2fbee 197 Gene3D G3DSA:2.60.130.10 40 193 8.1E-40 T 06-07-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 CDO28_RS27520 8f27e210f2cc2337ca732d9361f2fbee 197 Pfam PF00775 Dioxygenase 53 167 4.3E-13 T 06-07-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 CDO28_RS15430 f6a449a6b5f2935bedd1cdcd7c16af55 151 SUPERFAMILY SSF54637 2 147 8.53E-30 T 06-07-2017 IPR029069 HotDog domain CDO28_RS15430 f6a449a6b5f2935bedd1cdcd7c16af55 151 Pfam PF01575 MaoC like domain 11 100 8.6E-12 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS15430 f6a449a6b5f2935bedd1cdcd7c16af55 151 Gene3D G3DSA:3.10.129.10 2 146 1.3E-30 T 06-07-2017 IPR029069 HotDog domain CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-7 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 Gene3D G3DSA:3.40.190.10 175 268 3.3E-22 T 06-07-2017 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 Gene3D G3DSA:3.40.190.10 273 301 3.1E-20 T 06-07-2017 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 Gene3D G3DSA:3.40.190.10 90 172 3.1E-20 T 06-07-2017 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 SUPERFAMILY SSF53850 90 297 7.06E-41 T 06-07-2017 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.0E-13 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 Gene3D G3DSA:1.10.10.10 1 81 3.1E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23055 f2ff7587c3473659bb605aadc08308a9 313 SUPERFAMILY SSF46785 3 80 1.31E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26330 b9b59319bada4d3ec5b252908e25bd7f 220 SUPERFAMILY SSF161098 16 208 6.02E-38 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26330 b9b59319bada4d3ec5b252908e25bd7f 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 1.3E-26 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS26330 b9b59319bada4d3ec5b252908e25bd7f 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 216 1.4E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26330 b9b59319bada4d3ec5b252908e25bd7f 220 Gene3D G3DSA:1.10.3720.10 14 216 9.3E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 Pfam PF00005 ABC transporter 24 172 9.0E-31 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 SMART SM00382 33 227 3.0E-17 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 SUPERFAMILY SSF52540 4 228 1.73E-69 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 Pfam PF02687 FtsX-like permease family 529 640 1.5E-21 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 Gene3D G3DSA:3.40.50.300 2 228 1.1E-70 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS16940 66d6d27417119daba00e9dfb05fbe8ff 647 Pfam PF12704 MacB-like periplasmic core domain 271 492 1.5E-34 T 06-07-2017 IPR025857 MacB-like periplasmic core domain CDO28_RS13215 d510a51707bd2b5d92d8b8b98aee9b1c 217 Gene3D G3DSA:3.20.20.70 3 207 2.9E-27 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS13215 d510a51707bd2b5d92d8b8b98aee9b1c 217 SUPERFAMILY SSF51391 5 198 1.05E-35 T 06-07-2017 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS13215 d510a51707bd2b5d92d8b8b98aee9b1c 217 Pfam PF02581 Thiamine monophosphate synthase/TENI 10 187 4.8E-35 T 06-07-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS07855 3ab55e75478d31f72e8bed56346b9a39 211 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 27 198 1.3E-30 T 06-07-2017 IPR003740 Uncharacterised membrane protein YitT CDO28_RS09895 ea5c4d21f023bfd064dc6d465fa01cf3 174 Pfam PF01478 Type IV leader peptidase family 13 116 8.2E-16 T 06-07-2017 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CDO28_RS10340 278655e01eca6f9205426aa49e73e910 316 Pfam PF07182 Protein of unknown function (DUF1402) 20 316 1.8E-156 T 06-07-2017 IPR009842 Protein of unknown function DUF1402 CDO28_RS24570 d968b781514ab6da98b09673c27002f7 334 SUPERFAMILY SSF89733 7 320 1.57E-85 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS24570 d968b781514ab6da98b09673c27002f7 334 Gene3D G3DSA:3.30.1370.60 74 276 4.5E-68 T 06-07-2017 CDO28_RS24570 d968b781514ab6da98b09673c27002f7 334 Pfam PF02615 Malate/L-lactate dehydrogenase 7 297 2.7E-81 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS24570 d968b781514ab6da98b09673c27002f7 334 Gene3D G3DSA:1.10.1530.10 7 73 1.3E-10 T 06-07-2017 CDO28_RS28930 800a9aa60e835f8a457746a495669844 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 16 321 7.2E-30 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28930 800a9aa60e835f8a457746a495669844 356 SUPERFAMILY SSF51735 12 335 6.91E-60 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28930 800a9aa60e835f8a457746a495669844 356 Gene3D G3DSA:3.40.50.720 8 195 1.1E-39 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS28930 800a9aa60e835f8a457746a495669844 356 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 9 353 7.3E-144 T 06-07-2017 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 CDO28_RS28930 800a9aa60e835f8a457746a495669844 356 Gene3D G3DSA:3.90.25.10 196 354 2.6E-35 T 06-07-2017 CDO28_RS21265 cfee3ed9f2a56212cf8bea4066dca83c 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 304 7.2E-30 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 SUPERFAMILY SSF53697 43 337 5.56E-59 T 06-07-2017 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 Gene3D G3DSA:3.10.580.10 208 334 3.4E-32 T 06-07-2017 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 Pfam PF01380 SIS domain 62 188 1.9E-28 T 06-07-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 Gene3D G3DSA:3.40.50.10490 29 207 2.8E-45 T 06-07-2017 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 Pfam PF00571 CBS domain 281 334 8.3E-8 T 06-07-2017 IPR000644 CBS domain CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 Pfam PF00571 CBS domain 234 273 4.3E-5 T 06-07-2017 IPR000644 CBS domain CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 PIRSF PIRSF004692 4 337 8.5E-125 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS07715 0516de82aef9295f4b265adcaabd9f65 337 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 61 327 1.8E-86 T 06-07-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDO28_RS19930 271710255f790126e475a560fc7d2fb5 106 Gene3D G3DSA:3.30.70.900 1 104 5.6E-25 T 06-07-2017 CDO28_RS19930 271710255f790126e475a560fc7d2fb5 106 SUPERFAMILY SSF54909 1 105 4.02E-29 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS19930 271710255f790126e475a560fc7d2fb5 106 Pfam PF07978 NIPSNAP 4 104 2.7E-29 T 06-07-2017 IPR012577 NIPSNAP CDO28_RS21025 5271d9ce9aeb59c9341ec44fa8c20e51 176 Gene3D G3DSA:1.10.760.10 28 141 1.4E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS21025 5271d9ce9aeb59c9341ec44fa8c20e51 176 SUPERFAMILY SSF46626 14 157 4.57E-22 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS21025 5271d9ce9aeb59c9341ec44fa8c20e51 176 Pfam PF00034 Cytochrome c 32 141 5.4E-5 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS23495 8e4487ee142b7b2b8a3ebbb27d4292a4 64 Pfam PF13936 Helix-turn-helix domain 4 37 5.4E-9 T 06-07-2017 IPR025246 Transposase IS30-like HTH domain CDO28_RS21865 5b892c73cde4a12e103b4db642304bd1 758 Gene3D G3DSA:3.40.50.2000 158 344 2.9E-22 T 06-07-2017 CDO28_RS21865 5b892c73cde4a12e103b4db642304bd1 758 Pfam PF00534 Glycosyl transferases group 1 176 343 1.3E-29 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS21865 5b892c73cde4a12e103b4db642304bd1 758 SUPERFAMILY SSF51445 414 750 5.14E-45 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS21865 5b892c73cde4a12e103b4db642304bd1 758 SUPERFAMILY SSF53756 9 365 1.88E-57 T 06-07-2017 CDO28_RS21865 5b892c73cde4a12e103b4db642304bd1 758 Gene3D G3DSA:3.20.20.80 411 746 1.0E-20 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS26305 e00edca8c34078ec1a4da02ccfd9c284 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 24 280 2.4E-123 T 06-07-2017 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 CDO28_RS26305 e00edca8c34078ec1a4da02ccfd9c284 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 275 1.6E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26305 e00edca8c34078ec1a4da02ccfd9c284 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 23 280 3.0E-97 T 06-07-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CDO28_RS26305 e00edca8c34078ec1a4da02ccfd9c284 291 SUPERFAMILY SSF161098 32 272 1.07E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26305 e00edca8c34078ec1a4da02ccfd9c284 291 Gene3D G3DSA:1.10.3720.10 27 279 6.6E-48 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 SUPERFAMILY SSF81333 5 74 1.83E-16 T 06-07-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 Gene3D G3DSA:1.20.20.10 6 73 2.4E-19 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 PRINTS PR00124 ATP synthase C subunit signature 47 72 4.1E-24 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 PRINTS PR00124 ATP synthase C subunit signature 30 45 4.1E-24 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 PRINTS PR00124 ATP synthase C subunit signature 9 28 4.1E-24 T 06-07-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 74 13.337 T 06-07-2017 CDO28_RS06410 28f2f7fc330434170603bfc24d0ed23e 75 Pfam PF00137 ATP synthase subunit C 9 71 1.0E-11 T 06-07-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CDO28_RS28715 71a8cbc728b35688d40f35c4ea6cf61c 404 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 392 3.6E-45 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS14710 84a69373a837a35cd462683e1a0bfdd8 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 248 1.8E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14710 84a69373a837a35cd462683e1a0bfdd8 266 Gene3D G3DSA:1.10.3720.10 3 250 2.9E-42 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14710 84a69373a837a35cd462683e1a0bfdd8 266 SUPERFAMILY SSF161098 4 251 1.31E-44 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 Pfam PF07969 Amidohydrolase family 119 397 1.9E-23 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 Pfam PF07969 Amidohydrolase family 65 118 2.8E-8 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 SUPERFAMILY SSF51556 75 390 4.44E-75 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS31245 214f45878763120c863ff27943b026ed 437 SUPERFAMILY SSF51338 381 419 1.6E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 SUPERFAMILY SSF51338 15 75 1.6E-10 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 Gene3D G3DSA:2.30.40.10 22 82 3.8E-12 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 Gene3D G3DSA:3.20.20.140 83 369 2.0E-81 T 06-07-2017 CDO28_RS31245 214f45878763120c863ff27943b026ed 437 Gene3D G3DSA:2.30.40.10 370 397 4.1E-4 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 Pfam PF01909 Nucleotidyltransferase domain 63 128 9.9E-5 T 06-07-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 Gene3D G3DSA:3.30.460.10 49 165 1.3E-20 T 06-07-2017 CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 Gene3D G3DSA:1.20.120.330 197 314 3.7E-10 T 06-07-2017 CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 SUPERFAMILY SSF81301 48 167 9.82E-13 T 06-07-2017 CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 Pfam PF05168 HEPN domain 197 313 1.4E-10 T 06-07-2017 IPR007842 HEPN domain CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 SMART SM00748 195 315 2.4E-36 T 06-07-2017 IPR007842 HEPN domain CDO28_RS33770 78a7a32e3c3c32210714ccce158db23b 331 SUPERFAMILY SSF81593 197 314 7.85E-9 T 06-07-2017 CDO28_RS23025 6abd1a5f43db34ec8c80994fd0668351 165 SUPERFAMILY SSF53146 24 148 9.42E-31 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS23025 6abd1a5f43db34ec8c80994fd0668351 165 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 26 149 2.5E-53 T 06-07-2017 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 CDO28_RS23025 6abd1a5f43db34ec8c80994fd0668351 165 Gene3D G3DSA:3.30.420.130 24 148 4.3E-37 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS23025 6abd1a5f43db34ec8c80994fd0668351 165 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 37 134 1.5E-19 T 06-07-2017 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis CDO28_RS11840 e9708e15fd6a2fa7330565f1b2f25089 307 Gene3D G3DSA:3.40.1130.10 94 224 3.9E-5 T 06-07-2017 CDO28_RS11840 e9708e15fd6a2fa7330565f1b2f25089 307 Pfam PF01553 Acyltransferase 90 223 1.6E-11 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS11840 e9708e15fd6a2fa7330565f1b2f25089 307 SUPERFAMILY SSF69593 87 226 6.8E-9 T 06-07-2017 CDO28_RS11840 e9708e15fd6a2fa7330565f1b2f25089 307 SMART SM00563 103 225 1.6E-6 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS28270 95d0bafeb083c2164dbbc3ac5924b695 437 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 422 5.3E-97 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS28270 95d0bafeb083c2164dbbc3ac5924b695 437 PIRSF PIRSF006066 8 433 3.5E-123 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS28270 95d0bafeb083c2164dbbc3ac5924b695 437 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 427 2.3E-117 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS12190 e5cce698ffa89871250a6d67d1d807ed 233 Pfam PF00005 ABC transporter 20 161 9.2E-28 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12190 e5cce698ffa89871250a6d67d1d807ed 233 Gene3D G3DSA:3.40.50.300 2 222 3.3E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12190 e5cce698ffa89871250a6d67d1d807ed 233 SUPERFAMILY SSF52540 3 226 1.66E-57 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12190 e5cce698ffa89871250a6d67d1d807ed 233 SMART SM00382 29 212 1.8E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS12190 e5cce698ffa89871250a6d67d1d807ed 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 57 235 2.2E-4 T 06-07-2017 CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 192 3.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 3.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 3.7E-6 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 63 295 4.8E-54 T 06-07-2017 CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 SUPERFAMILY SSF51735 57 295 1.06E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 259 279 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 58 75 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 194 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 223 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 144 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 225 242 7.9E-33 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27535 4fa8c76bff8e8f21368214fe3b502448 296 Gene3D G3DSA:3.40.50.720 57 294 7.3E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS15085 7d64426d9bfe0d55e0009ed42cafb7fa 308 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 232 307 1.3E-22 T 06-07-2017 IPR006260 TonB, C-terminal GO:0006810 CDO28_RS15085 7d64426d9bfe0d55e0009ed42cafb7fa 308 SUPERFAMILY SSF74653 206 307 1.96E-21 T 06-07-2017 CDO28_RS15085 7d64426d9bfe0d55e0009ed42cafb7fa 308 Gene3D G3DSA:3.30.1150.10 197 307 2.7E-22 T 06-07-2017 CDO28_RS15085 7d64426d9bfe0d55e0009ed42cafb7fa 308 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 231 306 2.3E-16 T 06-07-2017 IPR006260 TonB, C-terminal GO:0006810 CDO28_RS18135 9f15706157f5590b6586f4b72ee7c377 280 SUPERFAMILY SSF51197 1 280 6.59E-80 T 06-07-2017 CDO28_RS18135 9f15706157f5590b6586f4b72ee7c377 280 Gene3D G3DSA:1.10.1720.10 197 280 1.3E-33 T 06-07-2017 IPR008035 L-proline 3-hydroxylase, C-terminal GO:0016706|GO:0055114 CDO28_RS18135 9f15706157f5590b6586f4b72ee7c377 280 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 17 172 1.3E-21 T 06-07-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 CDO28_RS18135 9f15706157f5590b6586f4b72ee7c377 280 Gene3D G3DSA:2.60.120.330 2 196 2.7E-54 T 06-07-2017 IPR027443 Isopenicillin N synthase-like CDO28_RS18135 9f15706157f5590b6586f4b72ee7c377 280 Pfam PF05373 L-proline 3-hydroxylase, C-terminal 178 276 3.0E-41 T 06-07-2017 IPR008035 L-proline 3-hydroxylase, C-terminal GO:0016706|GO:0055114 CDO28_RS04410 9a8fdbaaafce1e0a52fb74a53ab9e9c8 160 Gene3D G3DSA:1.10.940.10 15 157 1.3E-37 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS04410 9a8fdbaaafce1e0a52fb74a53ab9e9c8 160 Pfam PF01029 NusB family 19 152 1.5E-33 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS04410 9a8fdbaaafce1e0a52fb74a53ab9e9c8 160 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 14 155 21.995 T 06-07-2017 IPR011605 NusB antitermination factor GO:0006353 CDO28_RS04410 9a8fdbaaafce1e0a52fb74a53ab9e9c8 160 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 16 153 3.1E-40 T 06-07-2017 IPR011605 NusB antitermination factor GO:0006353 CDO28_RS04410 9a8fdbaaafce1e0a52fb74a53ab9e9c8 160 SUPERFAMILY SSF48013 15 157 1.13E-36 T 06-07-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 Pfam PF12804 MobA-like NTP transferase domain 344 505 2.6E-39 T 06-07-2017 IPR025877 MobA-like NTP transferase CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 SUPERFAMILY SSF53448 343 536 3.38E-31 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 PIRSF PIRSF036626 1 538 2.5E-290 T 06-07-2017 IPR012184 Bifunctional molybdopterin binding protein /nucleotidyl transferase, putative CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 SUPERFAMILY SSF53218 179 302 4.45E-20 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 SMART SM00852 170 466 0.0011 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 Pfam PF00994 Probable molybdopterin binding domain 179 266 1.9E-6 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 Gene3D G3DSA:3.40.980.10 156 300 2.8E-16 T 06-07-2017 IPR001453 MoaB/Mog domain CDO28_RS00535 f2f6b4c4eb3f352ecb3360460661f0a9 538 Gene3D G3DSA:3.90.550.10 341 535 2.0E-31 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 13 410 5.2E-118 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 Gene3D G3DSA:3.40.630.10 354 413 3.9E-107 T 06-07-2017 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 Gene3D G3DSA:3.40.630.10 7 228 3.9E-107 T 06-07-2017 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 Gene3D G3DSA:3.30.70.360 229 328 9.5E-36 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 Pfam PF07687 Peptidase dimerisation domain 215 314 6.6E-6 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 Pfam PF01546 Peptidase family M20/M25/M40 84 409 7.3E-41 T 06-07-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 SUPERFAMILY SSF55031 216 332 4.45E-28 T 06-07-2017 IPR011650 Peptidase M20, dimerisation domain CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 PIRSF PIRSF001235 7 415 1.1E-119 T 06-07-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 SUPERFAMILY SSF53187 6 226 2.77E-90 T 06-07-2017 CDO28_RS14940 66c49201f30a0078e1e706fbb487c9ab 416 SUPERFAMILY SSF53187 339 412 2.77E-90 T 06-07-2017 CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 Gene3D G3DSA:3.40.50.1000 199 278 2.3E-32 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 Gene3D G3DSA:3.40.50.1000 14 93 2.3E-32 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 Pfam PF13344 Haloacid dehalogenase-like hydrolase 20 123 1.8E-15 T 06-07-2017 IPR006357 HAD-superfamily hydrolase, subfamily IIA CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 11 250 3.6E-74 T 06-07-2017 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 SUPERFAMILY SSF56784 17 278 1.23E-44 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS16110 4dd1e8538f6313a3f0109f9d6ddcb33b 281 Pfam PF13242 HAD-hyrolase-like 201 277 2.2E-15 T 06-07-2017 CDO28_RS13200 19210f822f410d853df705891f1e244b 57 Pfam PF04325 Protein of unknown function (DUF465) 7 52 1.2E-13 T 06-07-2017 IPR007420 Protein of unknown function DUF465 CDO28_RS05715 0c9b42196b075b786f03097d8046fd2b 131 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 2 123 1.0E-5 T 06-07-2017 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE CDO28_RS18355 f040c952ecb4356b47b8fef239087518 87 Gene3D G3DSA:1.10.10.10 12 71 5.9E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS18355 f040c952ecb4356b47b8fef239087518 87 SUPERFAMILY SSF46955 11 67 7.94E-10 T 06-07-2017 IPR009061 Putative DNA-binding domain CDO28_RS18355 f040c952ecb4356b47b8fef239087518 87 Pfam PF12728 Helix-turn-helix domain 14 61 3.1E-9 T 06-07-2017 CDO28_RS13970 16e9bc295300375c0f41b6b44a5fff2e 160 Pfam PF13508 Acetyltransferase (GNAT) domain 41 142 5.0E-10 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS13970 16e9bc295300375c0f41b6b44a5fff2e 160 SUPERFAMILY SSF55729 16 145 2.88E-16 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS13970 16e9bc295300375c0f41b6b44a5fff2e 160 Gene3D G3DSA:3.40.630.30 18 144 4.1E-16 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS20150 18cd77014242404fae64bfafdd87b91e 355 Pfam PF08012 Protein of unknown function (DUF1702) 37 347 1.2E-71 T 06-07-2017 IPR012964 Protein of unknown function DUF1702 CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Gene3D G3DSA:3.40.50.300 3 234 2.7E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Pfam PF08402 TOBE domain 283 354 1.1E-15 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Gene3D G3DSA:2.40.50.140 288 346 5.6E-13 T 06-07-2017 IPR012340 Nucleic acid-binding, OB-fold CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 SMART SM00382 28 211 7.0E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 SUPERFAMILY SSF52540 4 242 4.26E-87 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Gene3D G3DSA:2.40.50.100 348 361 3.3E-14 T 06-07-2017 CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Gene3D G3DSA:2.40.50.100 239 287 3.3E-14 T 06-07-2017 CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 Pfam PF00005 ABC transporter 19 161 5.3E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 SUPERFAMILY SSF50331 236 361 1.63E-29 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS28235 31a9ebdf89d91d7cf6ddd45d080b1bbf 391 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS01240 59ba56e5028c6c6e070b83e98725f1eb 139 Pfam PF06147 Protein of unknown function (DUF968) 15 83 1.1E-8 T 06-07-2017 IPR010373 Protein of unknown function DUF968 CDO28_RS19840 db8e5fa809fdff84d5a7d3aa7b1d1de9 349 Pfam PF10503 Esterase PHB depolymerase 53 244 3.5E-40 T 06-07-2017 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 CDO28_RS19840 db8e5fa809fdff84d5a7d3aa7b1d1de9 349 SUPERFAMILY SSF53474 127 313 1.13E-37 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19840 db8e5fa809fdff84d5a7d3aa7b1d1de9 349 SUPERFAMILY SSF53474 20 127 2.17E-18 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19840 db8e5fa809fdff84d5a7d3aa7b1d1de9 349 Gene3D G3DSA:3.40.50.1820 32 287 6.3E-44 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS19840 db8e5fa809fdff84d5a7d3aa7b1d1de9 349 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 43 250 4.2E-61 T 06-07-2017 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 CDO28_RS21580 c8e6a79dee95140200d0a7e165253a7e 331 Pfam PF03595 Voltage-dependent anion channel 22 317 4.7E-47 T 06-07-2017 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 CDO28_RS07040 c6ed5f12fc5f8628c0e01c2932bbd5e4 273 SUPERFAMILY SSF161098 7 258 9.16E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07040 c6ed5f12fc5f8628c0e01c2932bbd5e4 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 254 9.2E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07040 c6ed5f12fc5f8628c0e01c2932bbd5e4 273 Gene3D G3DSA:1.10.3720.10 7 260 1.0E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26560 7415f996d118514e503e0e05f77d78fa 449 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 222 393 7.3E-10 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS26560 7415f996d118514e503e0e05f77d78fa 449 SUPERFAMILY SSF55073 212 400 1.55E-33 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS26560 7415f996d118514e503e0e05f77d78fa 449 Gene3D G3DSA:3.30.70.1230 220 401 3.5E-21 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS12270 5c447afe82a25cfc5230ebef3bb14a80 293 Gene3D G3DSA:1.10.3720.10 83 290 2.0E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12270 5c447afe82a25cfc5230ebef3bb14a80 293 SUPERFAMILY SSF161098 87 274 7.06E-23 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12270 5c447afe82a25cfc5230ebef3bb14a80 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 293 3.0E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 8.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.7E-8 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 Gene3D G3DSA:3.40.50.720 6 256 1.2E-75 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.0E-37 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 255 1.5E-54 T 06-07-2017 CDO28_RS29230 18d0284f0b0d60710cf1b0ae950a03c3 260 SUPERFAMILY SSF51735 7 256 2.43E-70 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS11685 2f3cee9f3fa44acf666016ab66f11423 97 Pfam PF03795 YCII-related domain 1 87 1.1E-22 T 06-07-2017 IPR005545 YCII-related CDO28_RS11685 2f3cee9f3fa44acf666016ab66f11423 97 Gene3D G3DSA:3.30.70.1060 1 92 2.8E-29 T 06-07-2017 CDO28_RS11685 2f3cee9f3fa44acf666016ab66f11423 97 SUPERFAMILY SSF54909 1 92 1.64E-26 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS20575 875d822bec41d4c707cef95f08d1881a 230 SUPERFAMILY SSF55073 46 229 1.73E-48 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS20575 875d822bec41d4c707cef95f08d1881a 230 SMART SM00044 24 220 6.8E-7 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS20575 875d822bec41d4c707cef95f08d1881a 230 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 48 229 2.6E-26 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS20575 875d822bec41d4c707cef95f08d1881a 230 Gene3D G3DSA:3.30.70.1230 49 229 4.5E-39 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS15075 4efbff43197e4dc4a4495685541b3d4c 46 Gene3D G3DSA:2.10.70.10 7 46 8.2E-20 T 06-07-2017 CDO28_RS15075 4efbff43197e4dc4a4495685541b3d4c 46 Pfam PF10636 Hemin uptake protein hemP 11 46 2.4E-18 T 06-07-2017 IPR019600 Hemin uptake protein HemP CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 SUPERFAMILY SSF51735 7 253 1.97E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 7 254 1.7E-119 T 06-07-2017 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 251 6.0E-57 T 06-07-2017 CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 Gene3D G3DSA:3.40.50.720 7 253 1.0E-78 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 5.6E-38 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27350 393fdee6f78f68cf7fc390093dd3597b 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.3E-10 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS04740 1adad8ed62757a4a824eee637278c6e4 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 355 3.3E-60 T 06-07-2017 IPR005495 Permease LptG/LptF-related GO:0016021 CDO28_RS04740 1adad8ed62757a4a824eee637278c6e4 360 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 5 357 9.7E-95 T 06-07-2017 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 CDO28_RS11975 140ff0314e38de32ede9bff5bcc45aad 288 Gene3D G3DSA:1.10.3720.10 6 277 5.6E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11975 140ff0314e38de32ede9bff5bcc45aad 288 SUPERFAMILY SSF161098 51 276 4.58E-50 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11975 140ff0314e38de32ede9bff5bcc45aad 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 277 7.2E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17935 96e5050b1236f1c2f816a89ac1b56d08 530 Pfam PF13005 zinc-finger binding domain of transposase IS66 143 172 1.3E-7 T 06-07-2017 IPR024474 Zinc-finger binding domain of transposase IS66 CDO28_RS17935 96e5050b1236f1c2f816a89ac1b56d08 530 Pfam PF13007 Transposase C of IS166 homeodomain 52 128 4.2E-12 T 06-07-2017 IPR024463 Transposase TnpC, homeodomain CDO28_RS17935 96e5050b1236f1c2f816a89ac1b56d08 530 Pfam PF13817 IS66 C-terminal element 488 526 1.3E-15 T 06-07-2017 CDO28_RS17935 96e5050b1236f1c2f816a89ac1b56d08 530 Pfam PF03050 Transposase IS66 family 192 481 5.8E-89 T 06-07-2017 IPR004291 Transposase, IS66 CDO28_RS19845 8b664e39e48902176702cf9d97975434 235 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 4 221 2.1E-123 T 06-07-2017 IPR014063 Arsenate resistance ArsH CDO28_RS19845 8b664e39e48902176702cf9d97975434 235 SUPERFAMILY SSF52218 4 221 9.26E-63 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS19845 8b664e39e48902176702cf9d97975434 235 Gene3D G3DSA:3.40.50.360 3 225 2.1E-101 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS19845 8b664e39e48902176702cf9d97975434 235 Pfam PF03358 NADPH-dependent FMN reductase 29 172 1.3E-27 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS21555 4aaa9f6df5b3a6bf91c382aeb1682755 131 SUPERFAMILY SSF52172 3 124 4.27E-19 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS21555 4aaa9f6df5b3a6bf91c382aeb1682755 131 Gene3D G3DSA:3.40.50.2300 3 124 2.2E-28 T 06-07-2017 CDO28_RS21555 4aaa9f6df5b3a6bf91c382aeb1682755 131 Pfam PF00072 Response regulator receiver domain 6 116 8.7E-10 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21555 4aaa9f6df5b3a6bf91c382aeb1682755 131 SMART SM00448 4 116 3.3E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS22530 2409d58de98b263b3eb48b0abf26d816 82 Gene3D G3DSA:2.60.120.10 33 80 3.4E-9 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS22530 2409d58de98b263b3eb48b0abf26d816 82 SUPERFAMILY SSF51206 33 81 1.83E-12 T 06-07-2017 IPR018490 Cyclic nucleotide-binding-like CDO28_RS22530 2409d58de98b263b3eb48b0abf26d816 82 Pfam PF00027 Cyclic nucleotide-binding domain 33 80 3.8E-10 T 06-07-2017 IPR000595 Cyclic nucleotide-binding domain CDO28_RS29075 2caed1b777f4aed1a87ee2fe6740eb45 247 SMART SM00749 168 231 1.1E-14 T 06-07-2017 IPR014004 Transport-associated and nodulation domain, bacteria CDO28_RS29075 2caed1b777f4aed1a87ee2fe6740eb45 247 Pfam PF04972 BON domain 164 230 8.2E-19 T 06-07-2017 IPR007055 BON domain CDO28_RS30140 78749ee20de8fb90d5c02fd413c2ad29 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 272 1.8E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30140 78749ee20de8fb90d5c02fd413c2ad29 281 Gene3D G3DSA:1.10.3720.10 81 273 2.1E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30140 78749ee20de8fb90d5c02fd413c2ad29 281 SUPERFAMILY SSF161098 81 261 2.49E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 Pfam PF01327 Polypeptide deformylase 4 152 7.1E-40 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 PIRSF PIRSF004749 1 171 2.1E-49 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 PRINTS PR01576 Peptide deformylase signature 33 62 3.6E-26 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 PRINTS PR01576 Peptide deformylase signature 120 149 3.6E-26 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 PRINTS PR01576 Peptide deformylase signature 89 100 3.6E-26 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 PRINTS PR01576 Peptide deformylase signature 101 119 3.6E-26 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 158 1.9E-38 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 Hamap MF_00163 Peptide deformylase [def]. 2 162 24.513 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 Gene3D G3DSA:3.90.45.10 4 164 3.7E-50 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS03390 fbe6310887d6bb7bb49730722a611908 172 SUPERFAMILY SSF56420 2 163 4.45E-49 T 06-07-2017 IPR023635 Peptide deformylase CDO28_RS34365 96921fbddb3c04faf415def9235cbc6b 333 SUPERFAMILY SSF51735 50 195 4.01E-19 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS34365 96921fbddb3c04faf415def9235cbc6b 333 Gene3D G3DSA:3.40.50.720 46 213 1.8E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS34365 96921fbddb3c04faf415def9235cbc6b 333 SUPERFAMILY SSF48179 208 317 2.21E-13 T 06-07-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CDO28_RS34365 96921fbddb3c04faf415def9235cbc6b 333 Gene3D G3DSA:1.10.3660.10 249 330 8.4E-11 T 06-07-2017 CDO28_RS34365 96921fbddb3c04faf415def9235cbc6b 333 Pfam PF02153 Prephenate dehydrogenase 81 303 7.9E-16 T 06-07-2017 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 CDO28_RS11970 a3de992241dcfbca9d149f0c6fb85318 274 SUPERFAMILY SSF161098 9 273 5.33E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11970 a3de992241dcfbca9d149f0c6fb85318 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 268 1.5E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS11970 a3de992241dcfbca9d149f0c6fb85318 274 Gene3D G3DSA:1.10.3720.10 5 261 1.9E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23770 cfff8d0c42c125ad89ca90caa1a01c45 131 SUPERFAMILY SSF51182 8 130 3.56E-33 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS23770 cfff8d0c42c125ad89ca90caa1a01c45 131 Gene3D G3DSA:2.60.120.10 8 130 9.8E-37 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS23770 cfff8d0c42c125ad89ca90caa1a01c45 131 Pfam PF07883 Cupin domain 42 105 1.8E-12 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS04805 b475d1c42ba96fd860d78e84a2aa83bf 347 Pfam PF00248 Aldo/keto reductase family 16 339 6.6E-66 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS04805 b475d1c42ba96fd860d78e84a2aa83bf 347 SUPERFAMILY SSF51430 1 344 9.04E-101 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS04805 b475d1c42ba96fd860d78e84a2aa83bf 347 Gene3D G3DSA:3.20.20.100 1 344 1.9E-100 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 Pfam PF01022 Bacterial regulatory protein, arsR family 14 59 6.2E-13 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 SMART SM00418 7 85 2.1E-20 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 Gene3D G3DSA:1.10.10.10 7 104 7.2E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 9.3E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 9.3E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 9.3E-8 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS17400 01a6718cd0eff26cf22aad6561e5c174 109 SUPERFAMILY SSF46785 2 98 5.37E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28015 c1d51164d8d6b2eb8fc28ef60c3e0cfa 329 Gene3D G3DSA:3.40.50.2300 148 315 1.5E-38 T 06-07-2017 CDO28_RS28015 c1d51164d8d6b2eb8fc28ef60c3e0cfa 329 SUPERFAMILY SSF53822 23 326 2.16E-42 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28015 c1d51164d8d6b2eb8fc28ef60c3e0cfa 329 Gene3D G3DSA:3.40.50.2300 22 147 2.0E-21 T 06-07-2017 CDO28_RS28015 c1d51164d8d6b2eb8fc28ef60c3e0cfa 329 Pfam PF13407 Periplasmic binding protein domain 27 305 7.3E-47 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS18675 e1854580fba3dd82fc56ca9ddcd36a20 262 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 262 46.277 T 06-07-2017 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS18675 e1854580fba3dd82fc56ca9ddcd36a20 262 Pfam PF02654 Cobalamin-5-phosphate synthase 15 255 3.3E-49 T 06-07-2017 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 CDO28_RS14515 c3184f9b15d47cddd6a110f6a4f6ddd0 252 Pfam PF00005 ABC transporter 18 169 2.5E-30 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14515 c3184f9b15d47cddd6a110f6a4f6ddd0 252 Gene3D G3DSA:3.40.50.300 1 231 1.1E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS14515 c3184f9b15d47cddd6a110f6a4f6ddd0 252 SMART SM00382 26 225 2.2E-15 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS14515 c3184f9b15d47cddd6a110f6a4f6ddd0 252 SUPERFAMILY SSF52540 2 230 3.24E-58 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS28355 4f442970c22b2b9dcc4a4342be85458c 177 SUPERFAMILY SSF46785 27 162 1.9E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28355 4f442970c22b2b9dcc4a4342be85458c 177 Pfam PF02082 Transcriptional regulator 27 107 7.0E-24 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS28355 4f442970c22b2b9dcc4a4342be85458c 177 Gene3D G3DSA:1.10.10.10 27 165 1.7E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS28355 4f442970c22b2b9dcc4a4342be85458c 177 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 27 160 1.6E-31 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS21910 3697516e520b8105315e6f2b7f699d50 358 Gene3D G3DSA:3.40.50.150 167 339 1.0E-24 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21910 3697516e520b8105315e6f2b7f699d50 358 SUPERFAMILY SSF46785 34 102 6.67E-6 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS21910 3697516e520b8105315e6f2b7f699d50 358 Pfam PF13847 Methyltransferase domain 181 292 9.8E-13 T 06-07-2017 IPR025714 Methyltransferase domain CDO28_RS21910 3697516e520b8105315e6f2b7f699d50 358 SUPERFAMILY SSF53335 146 343 5.38E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS21910 3697516e520b8105315e6f2b7f699d50 358 Gene3D G3DSA:1.10.10.10 39 95 4.4E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS00740 f6efd9c29d009640e6cab4a6e66adf72 107 Gene3D G3DSA:1.20.120.160 24 73 1.2E-4 T 06-07-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 CDO28_RS07250 8bf34919af6f1b73c71ba1e6623602a0 188 SUPERFAMILY SSF53955 33 71 6.0E-21 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS07250 8bf34919af6f1b73c71ba1e6623602a0 188 SUPERFAMILY SSF53955 98 172 6.0E-21 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS07250 8bf34919af6f1b73c71ba1e6623602a0 188 Pfam PF01464 Transglycosylase SLT domain 35 164 4.3E-10 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS07250 8bf34919af6f1b73c71ba1e6623602a0 188 Gene3D G3DSA:1.10.530.10 33 171 9.4E-20 T 06-07-2017 CDO28_RS26385 1b72638f17778742df21b924abcd9aa1 412 Gene3D G3DSA:3.40.190.10 143 349 2.1E-54 T 06-07-2017 CDO28_RS26385 1b72638f17778742df21b924abcd9aa1 412 Pfam PF01547 Bacterial extracellular solute-binding protein 45 331 9.8E-46 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS26385 1b72638f17778742df21b924abcd9aa1 412 SUPERFAMILY SSF53850 41 408 7.25E-84 T 06-07-2017 CDO28_RS15190 edd3b024835d4eac0c30213af187058c 177 Gene3D G3DSA:3.40.50.300 6 171 2.7E-25 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15190 edd3b024835d4eac0c30213af187058c 177 SUPERFAMILY SSF52540 7 171 1.23E-23 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15190 edd3b024835d4eac0c30213af187058c 177 Pfam PF13671 AAA domain 8 144 2.5E-10 T 06-07-2017 CDO28_RS02780 6fe8d30cef78f74af1f0c62b992d88b4 429 SUPERFAMILY SSF56935 12 416 1.19E-55 T 06-07-2017 CDO28_RS02780 6fe8d30cef78f74af1f0c62b992d88b4 429 Gene3D G3DSA:2.40.160.60 43 429 5.2E-57 T 06-07-2017 CDO28_RS02780 6fe8d30cef78f74af1f0c62b992d88b4 429 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 46 381 8.2E-22 T 06-07-2017 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 SUPERFAMILY SSF53383 121 481 1.69E-77 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 Gene3D G3DSA:1.10.10.10 13 85 1.3E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 SUPERFAMILY SSF46785 13 99 1.78E-19 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 2.7E-14 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 Pfam PF00155 Aminotransferase class I and II 190 453 8.4E-19 T 06-07-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 SMART SM00345 25 84 2.0E-13 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 Gene3D G3DSA:3.40.640.10 180 378 5.6E-48 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 3.4E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS27550 1cc951c43ad51b701a84ad6936dd9ae9 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 3.4E-6 T 06-07-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDO28_RS04315 869605bf3589edefd36587b438813da6 191 Gene3D G3DSA:3.10.560.10 111 168 3.3E-12 T 06-07-2017 CDO28_RS04315 869605bf3589edefd36587b438813da6 191 Gene3D G3DSA:3.30.1950.10 47 110 1.6E-16 T 06-07-2017 CDO28_RS04315 869605bf3589edefd36587b438813da6 191 Pfam PF02563 Polysaccharide biosynthesis/export protein 37 112 7.9E-20 T 06-07-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDO28_RS04315 869605bf3589edefd36587b438813da6 191 Pfam PF10531 SLBB domain 118 162 5.8E-8 T 06-07-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS31055 2efc3f95f68c0865844410d2999fcba1 168 SUPERFAMILY SSF47240 1 156 8.12E-47 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS31055 2efc3f95f68c0865844410d2999fcba1 168 Gene3D G3DSA:1.20.1260.10 1 160 2.8E-48 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS31055 2efc3f95f68c0865844410d2999fcba1 168 Pfam PF05974 Domain of unknown function (DUF892) 3 157 3.7E-49 T 06-07-2017 IPR010287 Domain of unknown function DUF892 CDO28_RS33030 23158010e0044112a7cdc13eea3f8990 262 SUPERFAMILY SSF56112 15 201 1.04E-20 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS33030 23158010e0044112a7cdc13eea3f8990 262 Pfam PF01636 Phosphotransferase enzyme family 119 189 1.1E-6 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS33030 23158010e0044112a7cdc13eea3f8990 262 Pfam PF01636 Phosphotransferase enzyme family 22 106 3.6E-5 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS33030 23158010e0044112a7cdc13eea3f8990 262 Gene3D G3DSA:3.90.1200.10 32 208 3.0E-23 T 06-07-2017 CDO28_RS00865 3bdf713fef310d94985e122fdc6c8241 622 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 210 617 3.6E-111 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS00865 3bdf713fef310d94985e122fdc6c8241 622 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 218 621 1.3E-80 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS00865 3bdf713fef310d94985e122fdc6c8241 622 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 42 169 5.1E-22 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS21350 d1a612bc0314c2a8f0a3f07a5a6f19aa 330 Pfam PF07995 Glucose / Sorbosone dehydrogenase 104 323 9.9E-11 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS21350 d1a612bc0314c2a8f0a3f07a5a6f19aa 330 Gene3D G3DSA:2.120.10.30 36 327 9.0E-43 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS21350 d1a612bc0314c2a8f0a3f07a5a6f19aa 330 SUPERFAMILY SSF50952 46 329 1.96E-30 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS20245 54840c5590d1c4bffa244485cc5d10f4 96 SUPERFAMILY SSF143120 5 49 1.28E-7 T 06-07-2017 CDO28_RS20245 54840c5590d1c4bffa244485cc5d10f4 96 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 42 2.1E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS20245 54840c5590d1c4bffa244485cc5d10f4 96 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 6 30 2.4E-6 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS20245 54840c5590d1c4bffa244485cc5d10f4 96 Gene3D G3DSA:3.40.1620.10 4 33 4.2E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 SMART SM00646 261 415 2.3E-37 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 Gene3D G3DSA:3.40.630.40 198 296 9.1E-52 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 Gene3D G3DSA:3.40.630.40 343 419 9.1E-52 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 SUPERFAMILY SSF53187 198 295 2.01E-47 T 06-07-2017 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 SUPERFAMILY SSF53187 342 417 2.01E-47 T 06-07-2017 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 200 415 1.7E-42 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS03795 2123bf2c62c11ae5dbf27f0c6ee570f1 426 Pfam PF11741 AMIN domain 60 151 5.4E-8 T 06-07-2017 IPR021731 AMIN domain CDO28_RS11770 747e19202f4c97380e7cfdb5bb282163 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 92 2.4E-19 T 06-07-2017 IPR007711 Toxin HigB-1 CDO28_RS11770 747e19202f4c97380e7cfdb5bb282163 92 SUPERFAMILY SSF143011 1 92 2.22E-16 T 06-07-2017 CDO28_RS24265 76afccf754fe78d2b3d1710cb01e394f 283 Gene3D G3DSA:3.20.20.150 1 279 5.6E-90 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24265 76afccf754fe78d2b3d1710cb01e394f 283 SUPERFAMILY SSF51658 1 260 6.02E-67 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24265 76afccf754fe78d2b3d1710cb01e394f 283 Pfam PF01261 Xylose isomerase-like TIM barrel 23 220 4.1E-35 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS25000 ba54ce52e45f69b3fe5c203b4f3a3968 219 SUPERFAMILY SSF48452 44 215 8.34E-61 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS25000 ba54ce52e45f69b3fe5c203b4f3a3968 219 Gene3D G3DSA:1.20.58.320 43 119 1.7E-31 T 06-07-2017 CDO28_RS25000 ba54ce52e45f69b3fe5c203b4f3a3968 219 Gene3D G3DSA:1.25.40.10 121 218 2.0E-34 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS25000 ba54ce52e45f69b3fe5c203b4f3a3968 219 Pfam PF06041 Bacterial protein of unknown function (DUF924) 48 216 3.5E-54 T 06-07-2017 IPR010323 Protein of unknown function DUF924 CDO28_RS28925 e3d4c42c805cc2e30c28692798d04a78 255 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 254 1.5E-130 T 06-07-2017 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 CDO28_RS28925 e3d4c42c805cc2e30c28692798d04a78 255 Pfam PF00483 Nucleotidyl transferase 2 207 2.3E-14 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS28925 e3d4c42c805cc2e30c28692798d04a78 255 Gene3D G3DSA:3.90.550.10 1 254 2.1E-57 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28925 e3d4c42c805cc2e30c28692798d04a78 255 SUPERFAMILY SSF53448 1 254 6.98E-63 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS32195 898eabc774bba516118abf1cb1c22ff4 270 Pfam PF06283 Trehalose utilisation 16 229 8.8E-33 T 06-07-2017 IPR029010 ThuA-like domain CDO28_RS32195 898eabc774bba516118abf1cb1c22ff4 270 SUPERFAMILY SSF52317 12 248 8.01E-61 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS32195 898eabc774bba516118abf1cb1c22ff4 270 PIRSF PIRSF030013 10 257 2.0E-133 T 06-07-2017 IPR009381 Trehalose catabolism protein, ThuA, prokaryote CDO28_RS32195 898eabc774bba516118abf1cb1c22ff4 270 Gene3D G3DSA:3.40.50.880 8 255 1.6E-97 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS25785 0013ec6e97f5e5e181a19f86c868375f 183 SUPERFAMILY SSF56349 3 180 3.83E-35 T 06-07-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDO28_RS25785 0013ec6e97f5e5e181a19f86c868375f 183 Gene3D G3DSA:1.10.443.10 2 173 5.3E-29 T 06-07-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS25785 0013ec6e97f5e5e181a19f86c868375f 183 Pfam PF00589 Phage integrase family 2 167 5.4E-23 T 06-07-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDO28_RS02320 1d5fa5e2806f0530ec30ce950b4b4861 351 SUPERFAMILY SSF53756 12 350 6.28E-67 T 06-07-2017 CDO28_RS02320 1d5fa5e2806f0530ec30ce950b4b4861 351 Gene3D G3DSA:3.40.50.2000 138 326 7.3E-33 T 06-07-2017 CDO28_RS02320 1d5fa5e2806f0530ec30ce950b4b4861 351 Pfam PF00534 Glycosyl transferases group 1 153 325 4.4E-34 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 SUPERFAMILY SSF53850 1 257 6.29E-66 T 06-07-2017 CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 Gene3D G3DSA:3.40.190.10 25 113 3.2E-40 T 06-07-2017 CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 Gene3D G3DSA:3.40.190.10 215 257 3.2E-40 T 06-07-2017 CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 254 6.3E-60 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 SMART SM00062 26 256 1.6E-60 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS07760 7e2c5d501cf123a519d1f3ea75b5f2f4 260 Gene3D G3DSA:3.40.190.10 117 208 8.4E-25 T 06-07-2017 CDO28_RS00115 e257dc240b27de2bc044d90c1c75d6ea 196 Gene3D G3DSA:1.10.10.60 147 169 6.4E-4 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS00115 e257dc240b27de2bc044d90c1c75d6ea 196 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 103 188 6.0E-32 T 06-07-2017 IPR014057 Addiction module antidote protein, HI1420 CDO28_RS00115 e257dc240b27de2bc044d90c1c75d6ea 196 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 4 81 1.5E-29 T 06-07-2017 IPR014056 Addiction module killer protein, predicted CDO28_RS00115 e257dc240b27de2bc044d90c1c75d6ea 196 SUPERFAMILY SSF47413 125 187 3.94E-5 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS29585 b95b82997d2c11e4173af6f9d2e10b9b 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 293 3.0E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29585 b95b82997d2c11e4173af6f9d2e10b9b 299 Gene3D G3DSA:1.10.3720.10 27 285 9.9E-61 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29585 b95b82997d2c11e4173af6f9d2e10b9b 299 SUPERFAMILY SSF161098 27 294 8.24E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS00075 757a42d306af7de5d9080a8e123362d7 281 SUPERFAMILY SSF56300 192 253 1.65E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS00075 757a42d306af7de5d9080a8e123362d7 281 SUPERFAMILY SSF56300 15 136 1.65E-32 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS00075 757a42d306af7de5d9080a8e123362d7 281 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 16 231 2.5E-12 T 06-07-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CDO28_RS00075 757a42d306af7de5d9080a8e123362d7 281 Gene3D G3DSA:3.60.21.10 16 153 1.4E-35 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS00075 757a42d306af7de5d9080a8e123362d7 281 Gene3D G3DSA:3.60.21.10 199 251 1.4E-35 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS26735 4d4461033ebe8ebddbd24a44406ee0f1 168 Gene3D G3DSA:2.60.40.790 21 166 3.2E-39 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS26735 4d4461033ebe8ebddbd24a44406ee0f1 168 SUPERFAMILY SSF49764 30 167 1.94E-37 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS26735 4d4461033ebe8ebddbd24a44406ee0f1 168 Pfam PF00011 Hsp20/alpha crystallin family 68 166 9.1E-24 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 SUPERFAMILY SSF52540 34 266 9.96E-64 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 SMART SM00382 58 251 4.8E-9 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 Gene3D G3DSA:3.40.50.300 28 261 5.4E-67 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 34 270 4.3E-114 T 06-07-2017 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 CDO28_RS08630 9c59792c92a9849c862d27a8eec67ead 270 Pfam PF00005 ABC transporter 50 195 3.2E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS12710 8de030e293c26164fa535f4e54a6a8da 79 Pfam PF07704 Rv0623-like transcription factor 1 77 2.1E-18 T 06-07-2017 IPR011660 Rv0623-like transcription factor CDO28_RS05595 29cb56975bd3ab5e3a495b5ff8bf8fc8 114 SUPERFAMILY SSF57716 78 108 5.44E-8 T 06-07-2017 CDO28_RS05595 29cb56975bd3ab5e3a495b5ff8bf8fc8 114 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 76 108 2.2E-10 T 06-07-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CDO28_RS05595 29cb56975bd3ab5e3a495b5ff8bf8fc8 114 SUPERFAMILY SSF109635 1 77 7.59E-8 T 06-07-2017 CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 SUPERFAMILY SSF53474 5 256 1.62E-48 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 Gene3D G3DSA:3.40.50.1820 12 257 8.6E-50 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 Pfam PF00561 alpha/beta hydrolase fold 30 132 8.5E-26 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 7.8E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 7.8E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS02965 549697d5d7786098a651c2bff68c9e62 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 7.8E-8 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS03765 da6ea7410ab5703c3265bb5cd0540733 257 Pfam PF01513 ATP-NAD kinase 16 212 2.6E-17 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS03765 da6ea7410ab5703c3265bb5cd0540733 257 Hamap MF_00361 NAD kinase [nadK]. 6 256 20.53 T 06-07-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS03765 da6ea7410ab5703c3265bb5cd0540733 257 SUPERFAMILY SSF111331 26 242 6.28E-57 T 06-07-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain CDO28_RS03765 da6ea7410ab5703c3265bb5cd0540733 257 Gene3D G3DSA:2.60.200.30 112 227 2.2E-30 T 06-07-2017 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS03765 da6ea7410ab5703c3265bb5cd0540733 257 Gene3D G3DSA:3.40.50.10330 16 111 9.4E-19 T 06-07-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 CDO28_RS29375 427e6d5cce88852840055932a120b9bb 373 SUPERFAMILY SSF111369 48 290 3.92E-63 T 06-07-2017 CDO28_RS29375 427e6d5cce88852840055932a120b9bb 373 Gene3D G3DSA:2.40.50.100 168 199 8.7E-20 T 06-07-2017 CDO28_RS29375 427e6d5cce88852840055932a120b9bb 373 Gene3D G3DSA:2.40.50.100 60 93 8.7E-20 T 06-07-2017 CDO28_RS29375 427e6d5cce88852840055932a120b9bb 373 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 365 1.4E-81 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS29375 427e6d5cce88852840055932a120b9bb 373 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 283 2.2E-18 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS13695 9d684cd1f61380569761669528d915e3 77 SUPERFAMILY SSF89447 5 67 9.42E-5 T 06-07-2017 CDO28_RS13695 9d684cd1f61380569761669528d915e3 77 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 56 8.4E-9 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS30405 aac852735687c0d0aec589a88842af95 102 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 95 3.2E-11 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 Pfam PF00722 Glycosyl hydrolases family 16 61 231 2.6E-41 T 06-07-2017 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 Gene3D G3DSA:2.60.120.200 38 247 9.3E-48 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 ProSitePatterns PS01034 Glycosyl hydrolases family 16 active sites. 138 148 - T 06-07-2017 IPR008263 Glycoside hydrolase, family 16, active site GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 SUPERFAMILY SSF49899 23 247 6.1E-52 T 06-07-2017 IPR013320 Concanavalin A-like lectin/glucanase domain CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 135 150 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 114 130 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 169 186 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 151 164 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 211 233 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS28150 c0b7acf9aba086c7802819cea7c92700 269 PRINTS PR00737 Glycosyl hydrolase family 16 signature 95 113 1.0E-23 T 06-07-2017 IPR008264 Beta-glucanase GO:0004553|GO:0005975 CDO28_RS26795 59976694a9ff71512811308fedd96f2a 305 Gene3D G3DSA:3.40.190.120 134 241 9.3E-26 T 06-07-2017 CDO28_RS26795 59976694a9ff71512811308fedd96f2a 305 Gene3D G3DSA:3.40.190.10 23 133 3.3E-55 T 06-07-2017 CDO28_RS26795 59976694a9ff71512811308fedd96f2a 305 Gene3D G3DSA:3.40.190.10 254 305 3.3E-55 T 06-07-2017 CDO28_RS26795 59976694a9ff71512811308fedd96f2a 305 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 26 300 4.3E-56 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS26795 59976694a9ff71512811308fedd96f2a 305 SUPERFAMILY SSF53850 26 304 8.14E-55 T 06-07-2017 CDO28_RS12870 d3d200fcd9767d1542c0d159364b9b6f 162 Pfam PF01575 MaoC like domain 13 117 3.7E-24 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS12870 d3d200fcd9767d1542c0d159364b9b6f 162 Gene3D G3DSA:3.10.129.10 3 152 1.5E-33 T 06-07-2017 IPR029069 HotDog domain CDO28_RS12870 d3d200fcd9767d1542c0d159364b9b6f 162 SUPERFAMILY SSF54637 8 148 5.15E-34 T 06-07-2017 IPR029069 HotDog domain CDO28_RS23930 cd818507a16c8903f34864ea6603d3ca 237 SUPERFAMILY SSF52540 61 213 4.18E-21 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS23930 cd818507a16c8903f34864ea6603d3ca 237 Pfam PF06745 KaiC 60 194 2.0E-9 T 06-07-2017 IPR014774 KaiC-like domain CDO28_RS23930 cd818507a16c8903f34864ea6603d3ca 237 Gene3D G3DSA:3.40.50.300 62 201 7.8E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09905 1551303239e85b9834323a1516056435 138 Pfam PF13629 Pilus formation protein N terminal region 31 100 2.8E-20 T 06-07-2017 IPR032789 Pilus formation protein, N-terminal CDO28_RS14095 d3548578931cf06000da251f7a1beb1c 214 Pfam PF13763 Domain of unknown function (DUF4167) 11 92 1.6E-33 T 06-07-2017 IPR025430 Domain of unknown function DUF4167 CDO28_RS09335 35b8512346fbde669d057cb6c6c9bfa0 211 Pfam PF03458 UPF0126 domain 6 79 7.8E-20 T 06-07-2017 IPR005115 Uncharacterised domain UPF0126 CDO28_RS09335 35b8512346fbde669d057cb6c6c9bfa0 211 Pfam PF03458 UPF0126 domain 92 164 3.3E-17 T 06-07-2017 IPR005115 Uncharacterised domain UPF0126 CDO28_RS12535 e49cb00390ada7c4806dbe38257300f6 93 PIRSF PIRSF028784 2 93 4.0E-24 T 06-07-2017 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CDO28_RS12535 e49cb00390ada7c4806dbe38257300f6 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 35 87 1.1E-18 T 06-07-2017 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CDO28_RS30310 81bac8303e4aafe41aaa2df293b7bdca 149 SUPERFAMILY SSF51316 1 135 1.99E-27 T 06-07-2017 IPR011057 Mss4-like CDO28_RS30310 81bac8303e4aafe41aaa2df293b7bdca 149 Gene3D G3DSA:3.90.1590.10 1 140 5.4E-22 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS30310 81bac8303e4aafe41aaa2df293b7bdca 149 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 43 121 3.3E-9 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 Gene3D G3DSA:3.40.718.10 4 326 9.3E-110 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 SUPERFAMILY SSF53659 2 330 1.69E-107 T 06-07-2017 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 SMART SM01329 5 342 3.8E-153 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 238 257 - T 06-07-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 328 1.5E-86 T 06-07-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDO28_RS25645 d266014ccab2d16459de4209d1a5fd71 347 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 1 346 3.4E-174 T 06-07-2017 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 CDO28_RS15745 306e18064bd237fda5daf3ae77473bfb 213 SUPERFAMILY SSF52540 4 212 2.77E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15745 306e18064bd237fda5daf3ae77473bfb 213 PIRSF PIRSF021497 1 213 3.4E-86 T 06-07-2017 IPR015124 Trehalose 2-sulfotransferase GO:0016740 CDO28_RS15745 306e18064bd237fda5daf3ae77473bfb 213 Gene3D G3DSA:3.40.50.300 4 213 1.7E-68 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15745 306e18064bd237fda5daf3ae77473bfb 213 Pfam PF09037 Stf0 sulphotransferase 6 210 3.6E-73 T 06-07-2017 IPR024628 Sulphotransferase Stf0, domain CDO28_RS12350 788893682c70407be71d545903e3151f 347 Gene3D G3DSA:3.40.50.150 201 289 2.2E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS12350 788893682c70407be71d545903e3151f 347 SUPERFAMILY SSF53335 180 305 7.58E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 SUPERFAMILY SSF51735 134 305 7.76E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 Pfam PF00107 Zinc-binding dehydrogenase 171 289 1.1E-26 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 129 2.3E-34 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 Gene3D G3DSA:3.40.50.720 163 286 8.9E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 SUPERFAMILY SSF50129 1 169 5.33E-54 T 06-07-2017 IPR011032 GroES-like CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 06-07-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 Gene3D G3DSA:3.90.180.10 1 162 8.3E-57 T 06-07-2017 IPR011032 GroES-like CDO28_RS02295 50697fba2d96aea5c1354d081ce3b8c4 347 SMART SM00829 7 337 2.9E-4 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 Gene3D G3DSA:2.40.40.10 168 368 5.4E-49 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 Gene3D G3DSA:2.40.40.10 5 163 3.2E-26 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 Pfam PF03562 MltA specific insert domain 16 257 3.4E-63 T 06-07-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 SUPERFAMILY SSF50685 4 361 1.36E-113 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 SMART SM00925 100 257 2.5E-76 T 06-07-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 PIRSF PIRSF019422 1 369 1.5E-117 T 06-07-2017 IPR026044 Membrane-bound lytic murein transglycosylase A CDO28_RS10590 2546e074ae299e96f19d7cfed6e2e97e 372 Pfam PF06725 3D domain 280 356 2.3E-22 T 06-07-2017 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 CDO28_RS14765 f7af88cc6eb2e8a66c37179508e84667 128 Gene3D G3DSA:3.40.50.2300 12 126 3.3E-12 T 06-07-2017 CDO28_RS14765 f7af88cc6eb2e8a66c37179508e84667 128 SUPERFAMILY SSF52172 12 123 6.12E-13 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS14765 f7af88cc6eb2e8a66c37179508e84667 128 Pfam PF00072 Response regulator receiver domain 13 74 1.2E-6 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS33465 6327e52d255d31d9f72ac55369dfceec 415 SUPERFAMILY SSF53756 95 413 2.32E-17 T 06-07-2017 CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 Gene3D G3DSA:1.10.10.10 11 45 6.3E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 SUPERFAMILY SSF88659 13 44 7.29E-5 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 Pfam PF04198 Putative sugar-binding domain 55 309 2.5E-61 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 SUPERFAMILY SSF100950 60 309 2.18E-62 T 06-07-2017 CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 Gene3D G3DSA:3.40.50.1360 53 313 1.5E-67 T 06-07-2017 CDO28_RS12245 95b4c7bf6b77ed8ab63ea24351324778 315 Pfam PF04545 Sigma-70, region 4 13 44 1.2E-6 T 06-07-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS23450 ae1c383778324bd8cb935f257211170b 355 Gene3D G3DSA:3.40.50.150 96 243 3.9E-8 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS23450 ae1c383778324bd8cb935f257211170b 355 SUPERFAMILY SSF53335 62 234 4.3E-12 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04290 42d3f47a2b67fee729fa34ffeb18586a 70 Pfam PF11003 Protein of unknown function (DUF2842) 6 66 7.8E-23 T 06-07-2017 IPR021265 Protein of unknown function DUF2842 CDO28_RS24845 a0ef980ea898d26fb1671fd7f3a81b97 333 Pfam PF00482 Type II secretion system (T2SS), protein F 166 290 1.1E-18 T 06-07-2017 IPR018076 Type II secretion system F domain CDO28_RS13890 cc49c29e4ce451e8592c5356c1313d77 64 Pfam PF13627 Prokaryotic lipoprotein-attachment site 11 32 1.6E-7 T 06-07-2017 IPR032831 Prokaryotic lipoprotein-attachment site CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 Gene3D G3DSA:3.20.20.100 1 304 6.1E-83 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 SUPERFAMILY SSF51430 1 308 1.3E-76 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 163 182 3.8E-5 T 06-07-2017 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 261 273 3.8E-5 T 06-07-2017 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 112 122 3.8E-5 T 06-07-2017 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 207 213 3.8E-5 T 06-07-2017 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 274 287 3.8E-5 T 06-07-2017 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CDO28_RS34355 f60e973be1a8e7de4a2a0efc1901c538 328 Pfam PF00248 Aldo/keto reductase family 15 302 1.1E-65 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS33160 a09a0a8712de6d70a14ec6090f80d49f 617 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 18 356 3.7E-132 T 06-07-2017 IPR016624 Uncharacterised conserved protein UCP014753 CDO28_RS33160 a09a0a8712de6d70a14ec6090f80d49f 617 PIRSF PIRSF014753 2 600 2.8E-199 T 06-07-2017 IPR016624 Uncharacterised conserved protein UCP014753 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 PRINTS PR00313 NodO calcium binding signature 210 219 2.8E-11 T 06-07-2017 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 PRINTS PR00313 NodO calcium binding signature 131 139 2.8E-11 T 06-07-2017 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 PRINTS PR00313 NodO calcium binding signature 165 173 2.8E-11 T 06-07-2017 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 PRINTS PR00313 NodO calcium binding signature 38 49 2.8E-11 T 06-07-2017 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 37 55 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 251 269 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 77 93 0.0071 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 41 56 0.0049 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 113 126 0.084 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 201 217 0.18 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 291 306 0.12 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 245 262 0.0065 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 275 289 0.048 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 95 111 0.023 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 131 145 0.037 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 228 242 0.081 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 23 39 0.069 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 183 199 0.0064 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 165 181 2.9E-4 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 59 74 0.19 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 28 46 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 SUPERFAMILY SSF51120 169 371 2.99E-28 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Gene3D G3DSA:2.150.10.10 231 369 3.0E-29 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Gene3D G3DSA:2.150.10.10 4 149 7.6E-33 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 Gene3D G3DSA:2.150.10.10 162 230 1.5E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 287 305 - T 06-07-2017 IPR018511 Hemolysin-type calcium-binding conserved site CDO28_RS12140 4617faaff8724ffb7e0116bf94e6cc50 396 SUPERFAMILY SSF51120 19 151 8.29E-23 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 102 114 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 142 154 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 166 178 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 42 51 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 234 244 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 114 128 4.1E-29 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 63 83 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 173 193 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 83 102 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 218 243 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 44 63 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 194 215 3.9E-60 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 46 244 2.2E-94 T 06-07-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 Pfam PF00813 FliP family 46 240 2.2E-75 T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 173 188 - T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS07295 ffb60ba95face6bb18d0bf1584fcbc0e 245 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 221 233 - T 06-07-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 Gene3D G3DSA:3.40.309.10 273 453 2.1E-59 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 Pfam PF00171 Aldehyde dehydrogenase family 27 483 7.5E-146 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 SUPERFAMILY SSF53720 8 485 1.57E-150 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS25640 2e223633ccdd6aaa6672cfcf523574a7 487 Gene3D G3DSA:3.40.605.10 12 272 7.1E-88 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 Pfam PF06276 Ferric iron reductase FhuF-like transporter 67 209 9.2E-19 T 06-07-2017 IPR022770 Ferric iron reductase FhuF domain CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 216 237 4.3E-6 T 06-07-2017 IPR024726 Ferric iron reductase, C-terminal GO:0051537 CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 61 238 6.9E-48 T 06-07-2017 IPR008090 Ferric iron reductase CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 PRINTS PR01714 Ferric iron reductase signature 216 234 4.2E-7 T 06-07-2017 IPR008090 Ferric iron reductase CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 PRINTS PR01714 Ferric iron reductase signature 148 164 4.2E-7 T 06-07-2017 IPR008090 Ferric iron reductase CDO28_RS15900 37b4bfb7e7a83e0da8db01c59732c0b2 243 PRINTS PR01714 Ferric iron reductase signature 67 82 4.2E-7 T 06-07-2017 IPR008090 Ferric iron reductase CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 Pfam PF03486 HI0933-like protein 6 392 9.6E-148 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 5.2E-9 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.2E-9 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 5.2E-9 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 Gene3D G3DSA:3.50.50.60 4 187 1.5E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 Gene3D G3DSA:3.50.50.60 339 393 1.5E-50 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 SUPERFAMILY SSF160996 191 338 1.44E-36 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.4E-6 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 4.4E-6 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.4E-6 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 Gene3D G3DSA:2.40.30.10 189 269 2.5E-25 T 06-07-2017 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 SUPERFAMILY SSF51905 337 393 1.61E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 SUPERFAMILY SSF51905 4 189 1.61E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 Gene3D G3DSA:1.10.8.260 270 321 2.8E-13 T 06-07-2017 IPR023166 HI0933 insert-like domain CDO28_RS07095 dded45714363ea3a67b78d81cfcb3800 394 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 392 1.7E-122 T 06-07-2017 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CDO28_RS27880 c360f104b74e432c2088906bea99ff93 320 Pfam PF13407 Periplasmic binding protein domain 33 289 2.5E-45 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS27880 c360f104b74e432c2088906bea99ff93 320 SUPERFAMILY SSF53822 26 305 5.03E-71 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27880 c360f104b74e432c2088906bea99ff93 320 Gene3D G3DSA:3.40.50.2300 142 305 3.0E-47 T 06-07-2017 CDO28_RS27880 c360f104b74e432c2088906bea99ff93 320 Gene3D G3DSA:3.40.50.2300 28 141 3.3E-25 T 06-07-2017 CDO28_RS25285 2f9c98a55ebe7c62c1565a6a97ff39ff 117 Gene3D G3DSA:2.102.10.10 2 116 7.5E-28 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS25285 2f9c98a55ebe7c62c1565a6a97ff39ff 117 SUPERFAMILY SSF50022 2 117 1.27E-24 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS25285 2f9c98a55ebe7c62c1565a6a97ff39ff 117 Pfam PF00355 Rieske [2Fe-2S] domain 5 100 1.0E-12 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 Gene3D G3DSA:3.40.50.300 253 476 2.7E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 Gene3D G3DSA:3.40.50.300 2 233 2.3E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 Pfam PF00005 ABC transporter 272 422 2.0E-14 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 Pfam PF00005 ABC transporter 22 170 2.7E-33 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 SUPERFAMILY SSF52540 5 223 4.02E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 SMART SM00382 30 218 1.4E-12 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 SMART SM00382 281 475 3.0 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS20595 d261b9b673b3788772c2c3ab25acdec4 508 SUPERFAMILY SSF52540 255 476 9.84E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS32475 028a021e10d78adb03cb9976a6552134 487 Gene3D G3DSA:3.40.605.10 13 268 2.1E-88 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS32475 028a021e10d78adb03cb9976a6552134 487 SUPERFAMILY SSF53720 9 480 2.36E-157 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS32475 028a021e10d78adb03cb9976a6552134 487 Gene3D G3DSA:3.40.309.10 269 454 9.8E-61 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS32475 028a021e10d78adb03cb9976a6552134 487 Pfam PF00171 Aldehyde dehydrogenase family 21 479 2.7E-152 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23660 1f428aaee6ae9bb5c84c67dad5b2eb97 595 SUPERFAMILY SSF50022 9 107 3.27E-25 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS23660 1f428aaee6ae9bb5c84c67dad5b2eb97 595 Gene3D G3DSA:2.102.10.10 8 108 3.3E-27 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS23660 1f428aaee6ae9bb5c84c67dad5b2eb97 595 Pfam PF00355 Rieske [2Fe-2S] domain 14 82 1.3E-11 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS33670 ef7109994feac4d833e5ea559e0d13c0 363 Pfam PF00487 Fatty acid desaturase 75 317 5.0E-34 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 CDO28_RS25635 3d54ebc9c60308bd5df9d4e794dd14d9 117 Pfam PF05899 Protein of unknown function (DUF861) 43 113 2.6E-22 T 06-07-2017 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 CDO28_RS25635 3d54ebc9c60308bd5df9d4e794dd14d9 117 SUPERFAMILY SSF51182 10 115 7.13E-18 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS25635 3d54ebc9c60308bd5df9d4e794dd14d9 117 Gene3D G3DSA:2.60.120.10 18 115 9.3E-32 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS11560 82c3ed6b520696a2d8d6a118a48cdf36 195 Pfam PF13302 Acetyltransferase (GNAT) domain 27 163 1.2E-26 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS11560 82c3ed6b520696a2d8d6a118a48cdf36 195 Gene3D G3DSA:3.40.630.30 11 189 1.4E-40 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11560 82c3ed6b520696a2d8d6a118a48cdf36 195 SUPERFAMILY SSF55729 19 177 3.36E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS13950 4c29fada453c984be928f711dc49bfd5 215 SUPERFAMILY SSF48150 31 202 2.67E-37 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS13950 4c29fada453c984be928f711dc49bfd5 215 Gene3D G3DSA:1.10.340.30 43 149 1.1E-23 T 06-07-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDO28_RS13950 4c29fada453c984be928f711dc49bfd5 215 Gene3D G3DSA:1.10.1670.10 151 203 1.5E-14 T 06-07-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CDO28_RS13950 4c29fada453c984be928f711dc49bfd5 215 SMART SM00478 51 203 1.5E-5 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS13950 4c29fada453c984be928f711dc49bfd5 215 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 187 1.3E-10 T 06-07-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDO28_RS34240 d8326575ff61d137994cc510971d22ba 233 SUPERFAMILY SSF50199 46 184 6.15E-21 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34240 d8326575ff61d137994cc510971d22ba 233 Pfam PF00565 Staphylococcal nuclease homologue 68 181 2.2E-6 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34240 d8326575ff61d137994cc510971d22ba 233 SMART SM00318 38 182 7.5E-5 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34240 d8326575ff61d137994cc510971d22ba 233 Gene3D G3DSA:2.40.50.90 53 183 1.2E-13 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS09020 c26a522eba5ae06b06da9ed33db189b1 353 SUPERFAMILY SSF53187 18 341 7.94E-38 T 06-07-2017 CDO28_RS09020 c26a522eba5ae06b06da9ed33db189b1 353 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 31 338 3.6E-79 T 06-07-2017 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 CDO28_RS09020 c26a522eba5ae06b06da9ed33db189b1 353 Gene3D G3DSA:3.40.630.10 18 242 1.6E-17 T 06-07-2017 CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 Gene3D G3DSA:1.10.150.240 20 85 1.6E-28 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 185 8.9E-22 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 185 6.0E-15 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 SUPERFAMILY SSF56784 4 219 1.31E-52 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 Gene3D G3DSA:3.40.50.1000 3 19 8.1E-43 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05945 fe9702c235248ff8abfe4f2471f68b9e 231 Gene3D G3DSA:3.40.50.1000 87 223 8.1E-43 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 SUPERFAMILY SSF55811 7 171 6.23E-30 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 PRINTS PR00502 NUDIX hydrolase family signature 65 80 2.2E-6 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 PRINTS PR00502 NUDIX hydrolase family signature 51 65 2.2E-6 T 06-07-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 ProSitePatterns PS00893 Nudix box signature. 56 77 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 10 175 33.399 T 06-07-2017 IPR022927 RNA pyrophosphohydrolase RppH CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 Gene3D G3DSA:3.90.79.10 11 170 8.5E-31 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS11510 18c971acbc788cccfededd488bf3bcd5 175 Pfam PF00293 NUDIX domain 16 165 2.9E-23 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS05315 26f69ab18694c49fa5d362d5a090b28f 339 Pfam PF00535 Glycosyl transferase family 2 21 144 5.6E-27 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS05315 26f69ab18694c49fa5d362d5a090b28f 339 SUPERFAMILY SSF53448 19 279 1.75E-42 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS05315 26f69ab18694c49fa5d362d5a090b28f 339 Gene3D G3DSA:3.90.550.10 20 189 1.6E-25 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 SUPERFAMILY SSF51395 4 195 2.2E-106 T 06-07-2017 CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 SUPERFAMILY SSF51395 224 374 2.2E-106 T 06-07-2017 CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 PIRSF PIRSF000138 1 378 4.7E-128 T 06-07-2017 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 Pfam PF01070 FMN-dependent dehydrogenase 14 377 2.1E-135 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 06-07-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 CDO28_RS28485 99099efb63496a11d7829fd778a3b8ba 378 Gene3D G3DSA:3.20.20.70 4 376 2.4E-142 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 SUPERFAMILY SSF46785 17 154 1.39E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 SMART SM00347 42 142 1.4E-18 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 82 1.5E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 98 1.5E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 102 118 1.5E-6 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 Gene3D G3DSA:1.10.10.10 16 154 4.3E-35 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 Pfam PF12802 MarR family 47 106 1.3E-15 T 06-07-2017 CDO28_RS15540 c59e0a8158bcb39192db642d8b26725f 158 ProSitePatterns PS01117 MarR-type HTH domain signature. 81 115 - T 06-07-2017 IPR023187 Transcriptional regulator MarR-type, conserved site CDO28_RS23940 dd64c66e51f1d3169d5982fbe6c5b245 218 Pfam PF02371 Transposase IS116/IS110/IS902 family 83 161 1.8E-20 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CDO28_RS30630 20c6aabe8dbf482bab10956f50a979a4 259 Pfam PF02535 ZIP Zinc transporter 117 255 7.8E-9 T 06-07-2017 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDO28_RS24840 38c559950467f8553c9cc9b6ca08954e 321 Pfam PF00482 Type II secretion system (T2SS), protein F 183 311 1.4E-21 T 06-07-2017 IPR018076 Type II secretion system F domain CDO28_RS31520 ec86ba38fb91eaca18820ff2731d76aa 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 244 3.7E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31520 ec86ba38fb91eaca18820ff2731d76aa 259 SUPERFAMILY SSF161098 59 240 2.35E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31520 ec86ba38fb91eaca18820ff2731d76aa 259 Gene3D G3DSA:1.10.3720.10 61 254 2.5E-24 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16475 bf8c2a3bc24cd077f84774f3bb64200d 238 Pfam PF03591 AzlC protein 15 155 7.3E-37 T 06-07-2017 IPR011606 Branched-chain amino acid transport, permease CDO28_RS21930 19ad9e0cf84bcb824df21c8e3376f739 129 Pfam PF00072 Response regulator receiver domain 10 116 8.7E-10 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21930 19ad9e0cf84bcb824df21c8e3376f739 129 SMART SM00448 8 116 1.9E-7 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21930 19ad9e0cf84bcb824df21c8e3376f739 129 SUPERFAMILY SSF52172 5 119 2.28E-16 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS21930 19ad9e0cf84bcb824df21c8e3376f739 129 Gene3D G3DSA:3.40.50.2300 3 117 6.2E-14 T 06-07-2017 CDO28_RS29480 11aea54e66deec62df387b2c987754b1 271 Pfam PF00563 EAL domain 13 243 1.4E-37 T 06-07-2017 IPR001633 EAL domain CDO28_RS29480 11aea54e66deec62df387b2c987754b1 271 SUPERFAMILY SSF141868 14 246 1.83E-43 T 06-07-2017 IPR001633 EAL domain CDO28_RS29480 11aea54e66deec62df387b2c987754b1 271 Gene3D G3DSA:3.20.20.450 11 244 8.0E-41 T 06-07-2017 IPR001633 EAL domain CDO28_RS29480 11aea54e66deec62df387b2c987754b1 271 SMART SM00052 6 248 2.3E-11 T 06-07-2017 IPR001633 EAL domain CDO28_RS23215 c3fc7da1ee949fcc2397ee10ff4358cf 60 Gene3D G3DSA:1.10.150.20 1 43 4.1E-8 T 06-07-2017 CDO28_RS04750 f1f93ea0cec914ec6fbb17c181751e2b 314 SUPERFAMILY SSF109998 35 200 3.1E-25 T 06-07-2017 IPR027304 Trigger factor/SurA domain CDO28_RS27750 759b71f1e2ce973c74b9a36a7cb5faf0 178 Gene3D G3DSA:3.30.420.10 2 169 3.2E-10 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS27750 759b71f1e2ce973c74b9a36a7cb5faf0 178 SUPERFAMILY SSF53098 2 167 7.42E-16 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS04385 a620ee54eddf75fb90753dd717085cc8 183 Pfam PF02620 Uncharacterized ACR, COG1399 66 179 1.9E-11 T 06-07-2017 IPR003772 Protein of unknown function DUF177 CDO28_RS19960 19a11a20f2f5929ed7e97650946df5ea 430 SUPERFAMILY SSF56112 207 281 3.47E-6 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS19960 19a11a20f2f5929ed7e97650946df5ea 430 SUPERFAMILY SSF56112 23 119 3.47E-6 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS19960 19a11a20f2f5929ed7e97650946df5ea 430 SUPERFAMILY SSF56112 150 176 3.47E-6 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS02835 154643e4a3a9695b2803b4bd40ad99e9 389 Gene3D G3DSA:3.40.50.2000 184 295 6.8E-10 T 06-07-2017 CDO28_RS02835 154643e4a3a9695b2803b4bd40ad99e9 389 Pfam PF02684 Lipid-A-disaccharide synthetase 9 341 4.6E-78 T 06-07-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 CDO28_RS02835 154643e4a3a9695b2803b4bd40ad99e9 389 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 8 381 2.4E-61 T 06-07-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 CDO28_RS02835 154643e4a3a9695b2803b4bd40ad99e9 389 SUPERFAMILY SSF53756 7 308 1.14E-25 T 06-07-2017 CDO28_RS11195 9e20c4cb4f33bd15fcafefea461f0002 272 Pfam PF06764 Protein of unknown function (DUF1223) 52 247 1.2E-61 T 06-07-2017 IPR010634 Protein of unknown function DUF1223 CDO28_RS11195 9e20c4cb4f33bd15fcafefea461f0002 272 SUPERFAMILY SSF52833 47 263 5.6E-70 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS34645 aba4aec13af594b41f737a086d9ab3ee 577 Gene3D G3DSA:3.40.50.300 272 375 1.4E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34645 aba4aec13af594b41f737a086d9ab3ee 577 Gene3D G3DSA:3.40.50.300 1 226 1.4E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34645 aba4aec13af594b41f737a086d9ab3ee 577 SUPERFAMILY SSF52540 1 213 1.1E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34645 aba4aec13af594b41f737a086d9ab3ee 577 SUPERFAMILY SSF52540 303 375 1.1E-15 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS06135 76c52b6544e3ae64ee7eb4ec531ec70d 187 Pfam PF02632 BioY family 29 176 6.1E-36 T 06-07-2017 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CDO28_RS06135 76c52b6544e3ae64ee7eb4ec531ec70d 187 PIRSF PIRSF016661 1 183 3.6E-45 T 06-07-2017 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CDO28_RS02955 57ed2cc9d0e110111017137e8063765f 67 Pfam PF11324 Protein of unknown function (DUF3126) 5 66 5.9E-32 T 06-07-2017 IPR021473 Protein of unknown function DUF3126 CDO28_RS06675 49473d6d388dccafc0171fa4dfcef723 485 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 444 1.1E-73 T 06-07-2017 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 CDO28_RS08335 38410d50170002f5801f2fad57d8388c 179 Pfam PF06897 Protein of unknown function (DUF1269) 65 166 5.8E-36 T 06-07-2017 IPR009200 Protein of unknown function DUF1269, membrane associated CDO28_RS04940 90d572a2e31b18786278fcf6ecaf67fb 159 Gene3D G3DSA:3.90.1590.10 4 153 1.3E-42 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS04940 90d572a2e31b18786278fcf6ecaf67fb 159 SUPERFAMILY SSF51316 3 128 1.05E-40 T 06-07-2017 IPR011057 Mss4-like CDO28_RS04940 90d572a2e31b18786278fcf6ecaf67fb 159 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 110 5.7E-18 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 SUPERFAMILY SSF161098 158 378 1.96E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 SUPERFAMILY SSF161098 22 48 1.96E-49 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 160 669 3.1E-236 T 06-07-2017 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 SUPERFAMILY SSF161098 406 652 2.88E-33 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 Gene3D G3DSA:1.10.3720.10 409 656 3.4E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 Gene3D G3DSA:1.10.3720.10 163 383 4.2E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 Gene3D G3DSA:1.10.3720.10 25 54 4.2E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 478 658 2.5E-7 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27645 7561f17c6779784e8b55833586e3bf04 680 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 198 383 7.5E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 SUPERFAMILY SSF55347 143 316 3.92E-30 T 06-07-2017 CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 Gene3D G3DSA:3.30.360.10 147 339 8.6E-40 T 06-07-2017 CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 SUPERFAMILY SSF51735 17 166 3.73E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 147 252 3.5E-9 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 18 134 1.3E-17 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS31810 1f057b3bec51188cd21a8ae26297a496 341 Gene3D G3DSA:3.40.50.720 17 146 2.3E-32 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS13830 6dadb15e72445d326d24d264e781569e 184 Gene3D G3DSA:3.10.490.10 4 169 1.9E-28 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like CDO28_RS13830 6dadb15e72445d326d24d264e781569e 184 Pfam PF04752 ChaC-like protein 8 173 1.8E-53 T 06-07-2017 IPR006840 ChaC-like protein Reactome: R-HSA-174403 CDO28_RS13830 6dadb15e72445d326d24d264e781569e 184 SUPERFAMILY SSF110857 8 127 1.96E-12 T 06-07-2017 IPR013024 Butirosin biosynthesis, BtrG-like CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 PIRSF PIRSF039117 2 479 1.1E-108 T 06-07-2017 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 Gene3D G3DSA:3.40.50.300 248 473 2.5E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 Gene3D G3DSA:3.40.50.300 5 241 8.1E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 Pfam PF06745 KaiC 255 474 1.8E-30 T 06-07-2017 IPR014774 KaiC-like domain CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 Pfam PF06745 KaiC 12 239 2.7E-40 T 06-07-2017 IPR014774 KaiC-like domain CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 SUPERFAMILY SSF52540 10 239 5.81E-32 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 SUPERFAMILY SSF52540 253 473 7.94E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 SMART SM00382 29 216 0.32 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21940 9c41c99ee4fb8af22d75d03b9f0d4d22 481 SMART SM00382 272 452 0.11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-9 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 SUPERFAMILY SSF53850 91 297 8.14E-43 T 06-07-2017 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Gene3D G3DSA:1.10.10.10 1 81 2.7E-29 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Gene3D G3DSA:3.40.190.10 172 267 3.8E-23 T 06-07-2017 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 SUPERFAMILY SSF46785 2 81 4.29E-17 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Pfam PF03466 LysR substrate binding domain 95 297 7.0E-10 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.7E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Gene3D G3DSA:3.40.190.10 273 301 6.7E-24 T 06-07-2017 CDO28_RS23165 e6a2bd4f5bce8b7d902ebe68b6671c5d 308 Gene3D G3DSA:3.40.190.10 91 171 6.7E-24 T 06-07-2017 CDO28_RS05045 521d99674130b227289351277f291d64 412 Gene3D G3DSA:1.20.1250.20 17 199 8.6E-22 T 06-07-2017 CDO28_RS05045 521d99674130b227289351277f291d64 412 SUPERFAMILY SSF103473 14 401 8.63E-56 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS05045 521d99674130b227289351277f291d64 412 Pfam PF07690 Major Facilitator Superfamily 29 366 7.9E-32 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS05045 521d99674130b227289351277f291d64 412 Gene3D G3DSA:1.20.1250.20 219 399 1.5E-19 T 06-07-2017 CDO28_RS15265 d719d4ab05fdd9fdda3b4da4e84824f2 328 Pfam PF06904 Extensin-like protein C-terminus 149 328 9.3E-57 T 06-07-2017 IPR009683 Extensin-like, C-terminal CDO28_RS26190 3238f0c04592b01efdfb398e539e1bf2 109 SUPERFAMILY SSF54909 1 108 6.61E-36 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS26190 3238f0c04592b01efdfb398e539e1bf2 109 Pfam PF05336 Domain of unknown function (DUF718) 3 108 1.6E-38 T 06-07-2017 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 CDO28_RS31775 19c4d5c3603b02359e7e558e0ec1be7d 372 Pfam PF13524 Glycosyl transferases group 1 256 349 5.5E-18 T 06-07-2017 CDO28_RS31775 19c4d5c3603b02359e7e558e0ec1be7d 372 SUPERFAMILY SSF53756 15 354 1.84E-15 T 06-07-2017 CDO28_RS31480 c3e8959f5ccdf111e7977d1b13efc68b 176 TIGRFAM TIGR03874 4cys_cytochr: c-type cytochrome, methanol metabolism-related 32 173 6.2E-81 T 06-07-2017 IPR022411 C-type cytochrome, methanol metabolism-related CDO28_RS31480 c3e8959f5ccdf111e7977d1b13efc68b 176 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 66 129 6.1E-7 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS31480 c3e8959f5ccdf111e7977d1b13efc68b 176 SUPERFAMILY SSF46626 65 157 1.07E-12 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS31480 c3e8959f5ccdf111e7977d1b13efc68b 176 Gene3D G3DSA:1.10.760.10 66 143 5.0E-11 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS25275 46da8700248b31bdada596d8b5e661af 333 Gene3D G3DSA:3.40.190.100 115 262 1.4E-30 T 06-07-2017 CDO28_RS25275 46da8700248b31bdada596d8b5e661af 333 Gene3D G3DSA:3.40.190.10 24 112 8.7E-21 T 06-07-2017 CDO28_RS25275 46da8700248b31bdada596d8b5e661af 333 Gene3D G3DSA:3.40.190.10 263 322 8.7E-21 T 06-07-2017 CDO28_RS25275 46da8700248b31bdada596d8b5e661af 333 SUPERFAMILY SSF53850 22 328 2.01E-72 T 06-07-2017 CDO28_RS25275 46da8700248b31bdada596d8b5e661af 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 312 2.7E-61 T 06-07-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CDO28_RS25885 26309d9972ec1c51078d1acff1af0a2e 202 Pfam PF02630 SCO1/SenC 38 179 1.2E-41 T 06-07-2017 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS25885 26309d9972ec1c51078d1acff1af0a2e 202 SUPERFAMILY SSF52833 39 198 1.91E-48 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS25885 26309d9972ec1c51078d1acff1af0a2e 202 Gene3D G3DSA:3.40.30.10 25 199 1.4E-54 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00805 5ff8c48f4472909da1164bfbd62407ac 291 SMART SM00849 15 204 1.9E-25 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS00805 5ff8c48f4472909da1164bfbd62407ac 291 SUPERFAMILY SSF56281 9 285 2.17E-47 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS00805 5ff8c48f4472909da1164bfbd62407ac 291 Pfam PF00753 Metallo-beta-lactamase superfamily 19 204 1.8E-21 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS00805 5ff8c48f4472909da1164bfbd62407ac 291 Gene3D G3DSA:3.60.15.10 9 248 4.4E-49 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS01095 4b938265735babb97fa112524a5f5895 101 Pfam PF03937 Flavinator of succinate dehydrogenase 15 83 3.9E-25 T 06-07-2017 IPR005631 Flavinator of succinate dehydrogenase CDO28_RS01095 4b938265735babb97fa112524a5f5895 101 Gene3D G3DSA:1.10.150.250 9 89 7.1E-28 T 06-07-2017 IPR005631 Flavinator of succinate dehydrogenase CDO28_RS01095 4b938265735babb97fa112524a5f5895 101 SUPERFAMILY SSF109910 9 87 4.84E-24 T 06-07-2017 IPR005631 Flavinator of succinate dehydrogenase CDO28_RS05670 bfaf1d13e7613e40e19061f10583b776 136 Gene3D G3DSA:3.10.180.10 3 119 2.4E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS05670 bfaf1d13e7613e40e19061f10583b776 136 SUPERFAMILY SSF54593 9 122 5.78E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14145 5df70f550824ecdac8e4017831e0050f 320 SMART SM00849 88 295 4.4E-16 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14145 5df70f550824ecdac8e4017831e0050f 320 Pfam PF00753 Metallo-beta-lactamase superfamily 90 289 6.8E-17 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14145 5df70f550824ecdac8e4017831e0050f 320 Gene3D G3DSA:3.60.15.10 35 319 4.9E-49 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS14145 5df70f550824ecdac8e4017831e0050f 320 SUPERFAMILY SSF56281 35 317 2.92E-47 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS03840 281cbe91f538efc7b936f88acac617d2 255 Pfam PF01323 DSBA-like thioredoxin domain 99 242 2.0E-24 T 06-07-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 CDO28_RS03840 281cbe91f538efc7b936f88acac617d2 255 Gene3D G3DSA:3.40.30.10 78 247 2.9E-43 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS03840 281cbe91f538efc7b936f88acac617d2 255 SUPERFAMILY SSF52833 76 244 7.37E-41 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS20230 7d4404a739f320882b94f86a7fed7735 387 Pfam PF13289 SIR2-like domain 147 304 8.2E-11 T 06-07-2017 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 Gene3D G3DSA:3.30.465.10 102 223 1.2E-33 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 Pfam PF01565 FAD binding domain 47 183 7.2E-31 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 SUPERFAMILY SSF56176 9 223 1.52E-69 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 Pfam PF02913 FAD linked oxidases, C-terminal domain 223 473 1.0E-57 T 06-07-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 SUPERFAMILY SSF55103 227 476 3.6E-61 T 06-07-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 Gene3D G3DSA:3.30.43.10 8 101 2.1E-19 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS06250 7b7fc8b4c37536119f3a8b0858c5f18c 480 Gene3D G3DSA:1.10.45.10 434 473 4.4E-14 T 06-07-2017 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDO28_RS01645 22fa248a40c87b6732c3bc7628dac0f3 66 SUPERFAMILY SSF47789 2 57 1.7E-6 T 06-07-2017 CDO28_RS01645 22fa248a40c87b6732c3bc7628dac0f3 66 Gene3D G3DSA:1.10.150.20 2 56 1.5E-4 T 06-07-2017 CDO28_RS03475 58d61ee161c6742fd5633c3578c94a8d 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.5E-28 T 06-07-2017 IPR000390 Small multidrug resistance protein family GO:0016021 CDO28_RS03475 58d61ee161c6742fd5633c3578c94a8d 104 SUPERFAMILY SSF103481 5 102 4.32E-18 T 06-07-2017 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 SUPERFAMILY SSF46785 11 64 6.12E-13 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 Pfam PF13404 AsnC-type helix-turn-helix domain 12 51 9.7E-15 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 SMART SM00344 12 116 4.0E-22 T 06-07-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 Gene3D G3DSA:1.10.10.10 6 61 9.3E-21 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 Gene3D G3DSA:3.30.70.920 74 146 8.9E-17 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 4.9E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 4.9E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 4.9E-13 T 06-07-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 Pfam PF01037 Lrp/AsnC ligand binding domain 76 146 9.9E-14 T 06-07-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDO28_RS11910 54e17edf55b97b3ba98dce1e15086abd 150 SUPERFAMILY SSF54909 72 149 2.01E-15 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS22130 d31eaf67aa3c2ec13853d96b19cae61c 296 SUPERFAMILY SSF161098 22 289 3.01E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22130 d31eaf67aa3c2ec13853d96b19cae61c 296 Gene3D G3DSA:1.10.3720.10 25 291 8.7E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS22130 d31eaf67aa3c2ec13853d96b19cae61c 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 287 4.6E-6 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30205 2c5db51449ee032cbad2781a421ea06b 220 SUPERFAMILY SSF56524 17 219 5.49E-62 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS30205 2c5db51449ee032cbad2781a421ea06b 220 Gene3D G3DSA:3.90.420.10 34 217 1.4E-55 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS30205 2c5db51449ee032cbad2781a421ea06b 220 Pfam PF00174 Oxidoreductase molybdopterin binding domain 57 200 5.3E-36 T 06-07-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 169 179 - T 06-07-2017 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 Pfam PF00121 Triosephosphate isomerase 7 247 2.9E-71 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 8 235 1.0E-39 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 Gene3D G3DSA:3.20.20.70 7 252 2.6E-83 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 SUPERFAMILY SSF51351 6 251 1.2E-73 T 06-07-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS16125 0064c3f3455705ee26c2918b6a10347f 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 4 251 33.114 T 06-07-2017 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS16140 231e2480bf3c45cf73ad9a2a8c0c5a39 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS16140 231e2480bf3c45cf73ad9a2a8c0c5a39 398 Pfam PF00872 Transposase, Mutator family 1 377 4.1E-159 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS12170 231e2480bf3c45cf73ad9a2a8c0c5a39 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS12170 231e2480bf3c45cf73ad9a2a8c0c5a39 398 Pfam PF00872 Transposase, Mutator family 1 377 4.1E-159 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS23265 c7a6d7fe628a4b9792aa4b8853ad4f21 412 Pfam PF06666 Protein of unknown function (DUF1173) 20 403 2.5E-158 T 06-07-2017 IPR009553 Protein of unknown function DUF1173 CDO28_RS18990 7634366f4c859ad069b2771c1c4090c1 139 Pfam PF07681 DoxX 17 90 1.4E-11 T 06-07-2017 IPR032808 DoxX family CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 Gene3D G3DSA:1.10.10.60 192 242 3.9E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 SMART SM00342 205 287 4.4E-26 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 SUPERFAMILY SSF46689 190 239 3.54E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 Gene3D G3DSA:1.10.10.60 243 291 2.8E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 SUPERFAMILY SSF46689 241 291 2.42E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS25585 2fcf3fde078c0b8e776fe899499bd940 302 Pfam PF12833 Helix-turn-helix domain 211 288 3.9E-21 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS04880 a9ce261e834d3fec46094af6d2b47f58 199 Pfam PF02674 Colicin V production protein 6 149 7.5E-31 T 06-07-2017 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 CDO28_RS21755 e4cad0c81c340f40358b88843964127b 211 Gene3D G3DSA:3.30.160.190 83 159 1.6E-27 T 06-07-2017 CDO28_RS21755 e4cad0c81c340f40358b88843964127b 211 Pfam PF04800 ETC complex I subunit conserved region 84 167 4.5E-25 T 06-07-2017 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 CDO28_RS19570 f709cfdc52ed7dc053db7e0a1462c9a6 395 Gene3D G3DSA:1.20.1250.20 211 388 5.9E-13 T 06-07-2017 CDO28_RS19570 f709cfdc52ed7dc053db7e0a1462c9a6 395 Gene3D G3DSA:1.20.1250.20 19 196 3.6E-24 T 06-07-2017 CDO28_RS19570 f709cfdc52ed7dc053db7e0a1462c9a6 395 Pfam PF07690 Major Facilitator Superfamily 23 321 2.3E-32 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS19570 f709cfdc52ed7dc053db7e0a1462c9a6 395 SUPERFAMILY SSF103473 11 390 2.09E-51 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS05730 19980f41e30e063949b64bce680087ff 140 Gene3D G3DSA:2.20.25.10 1 41 4.7E-19 T 06-07-2017 CDO28_RS05730 19980f41e30e063949b64bce680087ff 140 Pfam PF02566 OsmC-like protein 41 137 2.3E-17 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS05730 19980f41e30e063949b64bce680087ff 140 Gene3D G3DSA:3.30.300.20 45 139 2.4E-34 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS05730 19980f41e30e063949b64bce680087ff 140 SUPERFAMILY SSF82784 1 139 4.19E-41 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS05730 19980f41e30e063949b64bce680087ff 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 139 2.4E-55 T 06-07-2017 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CDO28_RS07230 5db61b3c51b8e0263b6092feb5ee64cb 345 Pfam PF00700 Bacterial flagellin C-terminal helical region 263 345 1.9E-26 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS07230 5db61b3c51b8e0263b6092feb5ee64cb 345 SUPERFAMILY SSF64518 6 345 8.24E-24 T 06-07-2017 CDO28_RS07230 5db61b3c51b8e0263b6092feb5ee64cb 345 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 142 6.9E-35 T 06-07-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CDO28_RS02475 259808acd92fbc02200005e235934f1b 303 Pfam PF13391 HNH endonuclease 197 250 1.2E-7 T 06-07-2017 IPR003615 HNH nuclease CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 SUPERFAMILY SSF56601 433 728 1.1E-121 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 SUPERFAMILY SSF56601 266 318 1.1E-121 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 SUPERFAMILY SSF56601 214 236 1.1E-121 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 728 1.1E-182 T 06-07-2017 CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 SUPERFAMILY SSF53955 44 258 4.22E-71 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Pfam PF00905 Penicillin binding protein transpeptidase domain 438 725 3.5E-37 T 06-07-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Gene3D G3DSA:1.10.3810.10 56 234 4.5E-67 T 06-07-2017 CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Pfam PF17092 Penicillin-binding protein OB-like domain 321 436 1.4E-21 T 06-07-2017 IPR031376 Penicillin-binding protein, OB-like domain CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Gene3D G3DSA:3.40.710.10 235 318 3.1E-127 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Gene3D G3DSA:3.40.710.10 431 728 3.1E-127 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS20350 25a99c0c21327f713215c9ec641d7904 728 Pfam PF00912 Transglycosylase 55 233 2.2E-60 T 06-07-2017 IPR001264 Glycosyl transferase, family 51 CDO28_RS25515 32543d1761fee465c0e723e8ab984262 633 Pfam PF02705 K+ potassium transporter 23 555 9.1E-200 T 06-07-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 CDO28_RS25515 32543d1761fee465c0e723e8ab984262 633 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 14 633 32.627 T 06-07-2017 IPR023051 Potassium uptake protein, low affinity, Kup CDO28_RS03620 c42b43f03575fd975689ee44cd9d1246 97 Gene3D G3DSA:3.30.70.330 5 96 1.5E-36 T 06-07-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 CDO28_RS03620 c42b43f03575fd975689ee44cd9d1246 97 SUPERFAMILY SSF54189 5 93 7.91E-33 T 06-07-2017 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDO28_RS03620 c42b43f03575fd975689ee44cd9d1246 97 Pfam PF00276 Ribosomal protein L23 8 93 2.7E-33 T 06-07-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CDO28_RS03620 c42b43f03575fd975689ee44cd9d1246 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 96 21.268 T 06-07-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CDO28_RS22245 14055c9482783e9e1b4ea230b002e6df 105 Pfam PF00355 Rieske [2Fe-2S] domain 4 92 3.0E-20 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS22245 14055c9482783e9e1b4ea230b002e6df 105 Gene3D G3DSA:2.102.10.10 2 104 8.7E-31 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS22245 14055c9482783e9e1b4ea230b002e6df 105 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 4 104 1.4E-55 T 06-07-2017 IPR012747 MocE Rieske [2Fe-2S] CDO28_RS22245 14055c9482783e9e1b4ea230b002e6df 105 SUPERFAMILY SSF50022 3 104 1.11E-30 T 06-07-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDO28_RS26895 12a0d4344a509d1e7f505b929d6e04c3 271 Pfam PF05013 N-formylglutamate amidohydrolase 11 227 1.1E-64 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS26895 12a0d4344a509d1e7f505b929d6e04c3 271 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 3 262 6.8E-115 T 06-07-2017 IPR010247 N-formylglutamate deformylase CDO28_RS26895 12a0d4344a509d1e7f505b929d6e04c3 271 SUPERFAMILY SSF53187 2 260 1.51E-78 T 06-07-2017 CDO28_RS26895 12a0d4344a509d1e7f505b929d6e04c3 271 Gene3D G3DSA:3.40.630.40 2 263 3.5E-86 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS27945 538140e379956dfb8d3d33916b13c21d 396 ProSitePatterns PS00336 Beta-lactamase class-C active site. 86 93 - T 06-07-2017 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 CDO28_RS27945 538140e379956dfb8d3d33916b13c21d 396 Gene3D G3DSA:3.40.710.10 34 386 2.0E-81 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS27945 538140e379956dfb8d3d33916b13c21d 396 Pfam PF00144 Beta-lactamase 38 386 1.8E-74 T 06-07-2017 IPR001466 Beta-lactamase-related CDO28_RS27945 538140e379956dfb8d3d33916b13c21d 396 SUPERFAMILY SSF56601 33 386 7.2E-98 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS08520 ca0da9e00639c3d13fe757b6efecfa28 292 SUPERFAMILY SSF69593 15 254 3.4E-30 T 06-07-2017 CDO28_RS08520 ca0da9e00639c3d13fe757b6efecfa28 292 Pfam PF01553 Acyltransferase 54 183 5.6E-21 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS08520 ca0da9e00639c3d13fe757b6efecfa28 292 SMART SM00563 67 186 5.8E-30 T 06-07-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CDO28_RS08520 ca0da9e00639c3d13fe757b6efecfa28 292 Gene3D G3DSA:3.40.1130.10 60 183 1.9E-9 T 06-07-2017 CDO28_RS32430 a7b999aed401f3a8a0767a75cb1e1eab 413 Pfam PF12704 MacB-like periplasmic core domain 19 252 5.9E-18 T 06-07-2017 IPR025857 MacB-like periplasmic core domain CDO28_RS32430 a7b999aed401f3a8a0767a75cb1e1eab 413 Pfam PF02687 FtsX-like permease family 281 405 3.8E-21 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 CDO28_RS05505 de4ad47b13a438da1939e8d8697245b2 211 SMART SM00287 19 81 1.7E-5 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS05505 de4ad47b13a438da1939e8d8697245b2 211 Pfam PF08239 Bacterial SH3 domain 27 78 5.3E-12 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS21140 7c09461ed76afbaab29108f4e96b1920 189 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 158 7.7E-28 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS15380 7ecb17277756b1db2cbcebc3aa5a2bb2 689 SUPERFAMILY SSF52317 258 510 1.01E-52 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS15380 7ecb17277756b1db2cbcebc3aa5a2bb2 689 Gene3D G3DSA:3.40.50.880 255 510 8.4E-37 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS31360 b717f99e7bdb50908fec68d2a0ba2e0a 205 Pfam PF00782 Dual specificity phosphatase, catalytic domain 120 169 6.3E-6 T 06-07-2017 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 CDO28_RS31360 b717f99e7bdb50908fec68d2a0ba2e0a 205 SUPERFAMILY SSF52799 21 173 1.41E-17 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS31360 b717f99e7bdb50908fec68d2a0ba2e0a 205 Gene3D G3DSA:3.90.190.10 25 174 2.7E-18 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 Gene3D G3DSA:3.40.50.2300 10 135 7.8E-40 T 06-07-2017 CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 Gene3D G3DSA:1.10.10.10 137 232 6.1E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 SMART SM00448 12 122 1.4E-39 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 SUPERFAMILY SSF46894 136 231 2.01E-21 T 06-07-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 SUPERFAMILY SSF52172 13 166 1.71E-39 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 230 2.8E-18 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 Pfam PF00072 Response regulator receiver domain 15 122 5.1E-28 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS15535 5dd51d3534a8d9df0f488aa3ec7afb9f 233 SMART SM00862 158 230 2.0E-17 T 06-07-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDO28_RS29155 910838e7a8dda99e9b04b11ba3c5380c 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 287 1.3E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29155 910838e7a8dda99e9b04b11ba3c5380c 297 Gene3D G3DSA:1.10.3720.10 6 285 3.4E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29155 910838e7a8dda99e9b04b11ba3c5380c 297 SUPERFAMILY SSF161098 59 284 6.67E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS00565 a05aaa11f7374569b8d845ff7ff2a802 155 SUPERFAMILY SSF52833 6 155 3.96E-48 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00565 a05aaa11f7374569b8d845ff7ff2a802 155 PIRSF PIRSF000239 3 155 1.7E-20 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS00565 a05aaa11f7374569b8d845ff7ff2a802 155 Gene3D G3DSA:3.40.30.10 6 155 2.3E-49 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS00565 a05aaa11f7374569b8d845ff7ff2a802 155 Pfam PF00578 AhpC/TSA family 7 133 2.3E-37 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 Gene3D G3DSA:1.20.1080.10 2 224 2.3E-65 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 Pfam PF00230 Major intrinsic protein 3 221 3.9E-45 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 TIGRFAM TIGR00861 MIP: MIP family channel proteins 8 221 5.2E-55 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 ProSitePatterns PS00221 MIP family signature. 61 69 - T 06-07-2017 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 Hamap MF_01146 Aquaporin Z [aqpZ]. 2 228 34.34 T 06-07-2017 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 165 187 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 204 224 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 43 67 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 80 99 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 3 22 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 PRINTS PR00783 Major intrinsic protein family signature 135 153 2.1E-49 T 06-07-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CDO28_RS16415 56ada8722cbd56913b9c11be1d169b9b 228 SUPERFAMILY SSF81338 2 224 1.7E-64 T 06-07-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CDO28_RS10540 3af35b7ee6d8643964a5c3fbdf200763 329 SUPERFAMILY SSF53822 34 323 1.68E-68 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS10540 3af35b7ee6d8643964a5c3fbdf200763 329 Gene3D G3DSA:3.40.50.2300 36 146 1.6E-19 T 06-07-2017 CDO28_RS10540 3af35b7ee6d8643964a5c3fbdf200763 329 Pfam PF13407 Periplasmic binding protein domain 37 298 1.3E-51 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS10540 3af35b7ee6d8643964a5c3fbdf200763 329 Gene3D G3DSA:3.40.50.2300 147 307 7.4E-47 T 06-07-2017 CDO28_RS30115 cd51c609618cf08f5b381895f4c63e5a 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 310 1.2E-34 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS33950 36f85567d1cc0ef028b07299b1eb80e2 325 Gene3D G3DSA:1.10.3720.10 92 319 8.9E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33950 36f85567d1cc0ef028b07299b1eb80e2 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 322 9.7E-37 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33950 36f85567d1cc0ef028b07299b1eb80e2 325 SUPERFAMILY SSF161098 94 308 1.7E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27025 e7dc7459a02613f6675c0e74f975faa4 345 SUPERFAMILY SSF53448 29 276 3.66E-44 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS27025 e7dc7459a02613f6675c0e74f975faa4 345 Pfam PF00535 Glycosyl transferase family 2 35 197 1.2E-22 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS27025 e7dc7459a02613f6675c0e74f975faa4 345 Gene3D G3DSA:3.90.550.10 32 246 1.9E-34 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS15735 733fabaa8d7488bb16723240202dd776 203 Gene3D G3DSA:3.40.50.300 28 167 4.8E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15735 733fabaa8d7488bb16723240202dd776 203 Pfam PF06745 KaiC 27 93 9.9E-9 T 06-07-2017 IPR014774 KaiC-like domain CDO28_RS15735 733fabaa8d7488bb16723240202dd776 203 SUPERFAMILY SSF52540 27 187 1.1E-20 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 Gene3D G3DSA:3.40.50.720 3 255 1.0E-64 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 2.4E-44 T 06-07-2017 CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 SUPERFAMILY SSF51735 7 255 1.89E-65 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS08740 1a8fb96b6f751a9e74d74bdc1be31a1f 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.5E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS27220 11f0ca68d79c9c36361a59ec895c93ef 392 Pfam PF04230 Polysaccharide pyruvyl transferase 50 328 3.8E-12 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 SUPERFAMILY SSF52540 7 250 2.99E-76 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 SMART SM00382 31 228 1.2E-16 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 Pfam PF00005 ABC transporter 22 180 1.8E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 Gene3D G3DSA:3.40.50.300 6 252 4.4E-80 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS26130 e556326684d8a812bea6ee28475be8e7 256 PIRSF PIRSF039085 3 256 4.3E-112 T 06-07-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CDO28_RS22615 c1ff9a5b715bd02ff4c8b28740a9f110 49 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 44 7.4E-22 T 06-07-2017 IPR004714 Cytochrome oxidase maturation protein cbb3-type CDO28_RS22615 c1ff9a5b715bd02ff4c8b28740a9f110 49 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 48 1.4E-27 T 06-07-2017 IPR004714 Cytochrome oxidase maturation protein cbb3-type CDO28_RS23205 3d03f626f2d2192a2357729eee101a00 176 Pfam PF02586 SOS response associated peptidase (SRAP) 65 144 2.8E-11 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS23205 3d03f626f2d2192a2357729eee101a00 176 SUPERFAMILY SSF143081 22 166 1.23E-28 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS23205 3d03f626f2d2192a2357729eee101a00 176 Gene3D G3DSA:3.90.1680.10 28 158 6.4E-16 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 Pfam PF00361 Proton-conducting membrane transporter 132 425 1.3E-51 T 06-07-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 243 269 1.1E-17 T 06-07-2017 CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 1.1E-17 T 06-07-2017 CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 221 242 1.1E-17 T 06-07-2017 CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 1.1E-17 T 06-07-2017 CDO28_RS24785 92475f76974a8e2fdffce4740e066e5b 487 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 72 118 5.2E-7 T 06-07-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 SUPERFAMILY SSF51161 44 335 2.89E-75 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 241 276 7.7E-8 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 179 2.2E-8 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 277 311 2.0E-6 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Gene3D G3DSA:2.160.10.10 231 344 4.1E-30 T 06-07-2017 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 17 347 5.6E-123 T 06-07-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 286 314 - T 06-07-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Gene3D G3DSA:2.160.10.10 121 230 4.3E-25 T 06-07-2017 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 18 344 34.7 T 06-07-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CDO28_RS02855 017a74baa3ab2406176a8fd36f1be40d 354 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 33 100 3.2E-14 T 06-07-2017 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 CDO28_RS02915 4ada1029270f2857419c41cbe7750420 241 Gene3D G3DSA:3.20.20.190 10 217 1.8E-47 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS02915 4ada1029270f2857419c41cbe7750420 241 SUPERFAMILY SSF51695 11 217 1.7E-48 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS02915 4ada1029270f2857419c41cbe7750420 241 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 223 1.4E-19 T 06-07-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CDO28_RS31660 6b84c864343ee6af6d2ba53f47f99a18 221 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 151 1.2E-5 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS31660 6b84c864343ee6af6d2ba53f47f99a18 221 Gene3D G3DSA:3.10.180.10 20 154 2.4E-20 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS31660 6b84c864343ee6af6d2ba53f47f99a18 221 SUPERFAMILY SSF54593 15 106 9.16E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS31660 6b84c864343ee6af6d2ba53f47f99a18 221 SUPERFAMILY SSF54593 140 158 9.16E-19 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14875 321438ed5fcd3ab5078523c694568272 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 2.4E-19 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain CDO28_RS14875 321438ed5fcd3ab5078523c694568272 98 Gene3D G3DSA:3.30.70.900 1 93 5.8E-31 T 06-07-2017 CDO28_RS14875 321438ed5fcd3ab5078523c694568272 98 SUPERFAMILY SSF54909 1 88 1.47E-27 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS22080 013b980f10ed6a62e0ea5b207514aa53 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 257 2.5E-30 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS22080 013b980f10ed6a62e0ea5b207514aa53 326 Gene3D G3DSA:3.40.50.720 1 318 2.4E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS22080 013b980f10ed6a62e0ea5b207514aa53 326 SUPERFAMILY SSF51735 1 322 7.8E-59 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS33980 23eb69f1c7586b96c962ed7362a480b0 92 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 50 2.7E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS33980 23eb69f1c7586b96c962ed7362a480b0 92 SUPERFAMILY SSF143120 4 58 1.57E-10 T 06-07-2017 CDO28_RS33980 23eb69f1c7586b96c962ed7362a480b0 92 Gene3D G3DSA:3.40.1620.10 19 49 2.5E-7 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS33980 23eb69f1c7586b96c962ed7362a480b0 92 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 70 2.7E-13 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS15840 1f43cb99f5f65e19b0cddc4691d71d94 159 Pfam PF08592 Domain of unknown function (DUF1772) 21 154 3.0E-18 T 06-07-2017 IPR013901 Protein of unknown function DUF1772 CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 Gene3D G3DSA:3.90.25.10 173 224 2.7E-36 T 06-07-2017 CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 Gene3D G3DSA:3.90.25.10 256 319 2.7E-36 T 06-07-2017 CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 Gene3D G3DSA:3.40.50.720 5 172 1.1E-49 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 254 2.0E-59 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 5 318 2.9E-127 T 06-07-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDO28_RS32825 52cacfe2f3ec8e3b85f7d6cfbe16ea4c 328 SUPERFAMILY SSF51735 1 318 2.28E-91 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS07450 c200e87ac06a7b83f952b24656819ebf 155 Pfam PF01584 CheW-like domain 15 149 1.1E-35 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07450 c200e87ac06a7b83f952b24656819ebf 155 SMART SM00260 10 147 5.0E-49 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07450 c200e87ac06a7b83f952b24656819ebf 155 SUPERFAMILY SSF50341 8 151 1.01E-38 T 06-07-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 CDO28_RS07450 c200e87ac06a7b83f952b24656819ebf 155 Gene3D G3DSA:2.40.50.180 53 90 4.0E-9 T 06-07-2017 CDO28_RS07450 c200e87ac06a7b83f952b24656819ebf 155 Gene3D G3DSA:2.30.30.40 91 140 5.1E-8 T 06-07-2017 CDO28_RS15845 4e49bf8cebefff8562fa36c4a6b39583 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 262 1.4E-61 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS15845 4e49bf8cebefff8562fa36c4a6b39583 263 Gene3D G3DSA:3.90.226.10 2 260 8.3E-84 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS15845 4e49bf8cebefff8562fa36c4a6b39583 263 SUPERFAMILY SSF52096 1 263 4.98E-85 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS01555 f1e87359cfb8e377d9542897f416b02f 741 Pfam PF06791 Prophage tail length tape measure protein 83 173 5.8E-11 T 06-07-2017 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal CDO28_RS33595 05d21bd796e7ada535d8f4250b96e00c 397 SUPERFAMILY SSF53383 8 385 1.93E-99 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS33595 05d21bd796e7ada535d8f4250b96e00c 397 Gene3D G3DSA:3.90.1150.10 264 386 3.7E-17 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS33595 05d21bd796e7ada535d8f4250b96e00c 397 Gene3D G3DSA:3.40.640.10 8 261 7.1E-82 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS33595 05d21bd796e7ada535d8f4250b96e00c 397 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 379 6.3E-103 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS33595 05d21bd796e7ada535d8f4250b96e00c 397 PIRSF PIRSF000390 4 389 1.1E-100 T 06-07-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 SUPERFAMILY SSF54593 136 252 5.91E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 Gene3D G3DSA:3.10.180.10 137 252 1.7E-32 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 Gene3D G3DSA:3.10.180.10 5 119 8.6E-35 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 SUPERFAMILY SSF54593 4 119 2.28E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 139 247 1.1E-6 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS12930 cc31d769cd5cd4be5df92c91adac8640 253 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 117 6.7E-7 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS19300 6f8e2f95266d45e6ff14b10aa40ac0fe 220 SUPERFAMILY SSF52266 7 213 5.95E-29 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS19300 6f8e2f95266d45e6ff14b10aa40ac0fe 220 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 11 202 6.2E-17 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS19300 6f8e2f95266d45e6ff14b10aa40ac0fe 220 Gene3D G3DSA:3.40.50.1110 7 212 1.2E-56 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS33415 8aae8643fc9c3e0f64d6debfd3aadb36 300 Pfam PF00535 Glycosyl transferase family 2 3 163 5.5E-20 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS33415 8aae8643fc9c3e0f64d6debfd3aadb36 300 SUPERFAMILY SSF53448 1 230 9.85E-41 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33415 8aae8643fc9c3e0f64d6debfd3aadb36 300 Gene3D G3DSA:3.90.550.10 2 219 5.7E-32 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS03405 9892aed7fc83a4c71fcf5edf65427d8c 515 Pfam PF04293 SpoVR like protein 15 454 2.2E-164 T 06-07-2017 IPR007390 Sporulation stage V, protein R CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 Pfam PF03600 Citrate transporter 17 537 1.0E-36 T 06-07-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 Pfam PF02080 TrkA-C domain 221 285 1.6E-10 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 Pfam PF02080 TrkA-C domain 311 379 1.2E-8 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 Gene3D G3DSA:3.30.70.1450 310 389 2.1E-18 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 Gene3D G3DSA:3.30.70.1450 218 295 7.2E-12 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 SUPERFAMILY SSF116726 217 290 5.75E-14 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS17300 d6127219636dac2b17f22be9f194f211 591 SUPERFAMILY SSF116726 306 387 5.89E-16 T 06-07-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 Gene3D G3DSA:3.40.30.10 4 166 2.3E-58 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 SUPERFAMILY SSF52833 3 216 1.18E-67 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 165 201 2.4E-14 T 06-07-2017 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 Gene3D G3DSA:3.30.1020.10 167 218 1.4E-25 T 06-07-2017 CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 Pfam PF00578 AhpC/TSA family 5 143 1.7E-29 T 06-07-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS28195 366e222c626705cf5f7ae3b12f9b554b 219 PIRSF PIRSF000239 1 216 8.4E-74 T 06-07-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDO28_RS22340 0e36203d67fc7b70b40b57d58eac4c83 360 Gene3D G3DSA:3.40.1160.10 1 243 5.7E-45 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS22340 0e36203d67fc7b70b40b57d58eac4c83 360 SUPERFAMILY SSF53633 1 243 1.57E-50 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS22340 0e36203d67fc7b70b40b57d58eac4c83 360 Pfam PF00696 Amino acid kinase family 2 227 4.9E-37 T 06-07-2017 IPR001048 Aspartate/glutamate/uridylate kinase CDO28_RS18665 cc58b102f8f719b965c6d64ead352a1f 233 SUPERFAMILY SSF50630 116 221 1.76E-17 T 06-07-2017 IPR021109 Aspartic peptidase domain CDO28_RS18665 cc58b102f8f719b965c6d64ead352a1f 233 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 113 232 4.0E-45 T 06-07-2017 IPR011969 Clan AA aspartic peptidase, C-terminal CDO28_RS18665 cc58b102f8f719b965c6d64ead352a1f 233 Pfam PF13975 gag-polyprotein putative aspartyl protease 127 217 5.0E-24 T 06-07-2017 CDO28_RS18665 cc58b102f8f719b965c6d64ead352a1f 233 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 137 148 - T 06-07-2017 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 CDO28_RS08000 bc2bafbad4de175762acd132645c1479 173 Pfam PF07750 GcrA cell cycle regulator 1 173 3.3E-73 T 06-07-2017 IPR011681 GcrA cell cycle regulator CDO28_RS02910 1fa2fff3fbcbd552a0672a77056de037 154 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 150 4.7E-37 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS02910 1fa2fff3fbcbd552a0672a77056de037 154 SUPERFAMILY SSF55298 4 153 1.73E-56 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS02910 1fa2fff3fbcbd552a0672a77056de037 154 Gene3D G3DSA:3.30.1330.40 2 153 2.4E-65 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS09070 a5c8c039f15cc71c3965424e1d267684 526 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 500 26.882 T 06-07-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS09070 a5c8c039f15cc71c3965424e1d267684 526 Pfam PF02601 Exonuclease VII, large subunit 133 497 5.9E-94 T 06-07-2017 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 CDO28_RS09070 a5c8c039f15cc71c3965424e1d267684 526 Pfam PF13742 OB-fold nucleic acid binding domain 16 109 2.4E-27 T 06-07-2017 IPR025824 OB-fold nucleic acid binding domain GO:0003676 CDO28_RS09070 a5c8c039f15cc71c3965424e1d267684 526 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 359 1.5E-119 T 06-07-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CDO28_RS27375 edb220f3cbe427a319ab4c9604f79903 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 308 1.8E-89 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS27375 edb220f3cbe427a319ab4c9604f79903 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 282 4.9E-68 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS27375 edb220f3cbe427a319ab4c9604f79903 325 PIRSF PIRSF006470 1 325 5.3E-98 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 311 419 1.1E-20 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 SUPERFAMILY SSF55874 254 420 6.42E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 Gene3D G3DSA:3.30.450.20 84 190 3.9E-6 T 06-07-2017 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 Gene3D G3DSA:1.10.287.130 191 251 7.2E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 81 420 4.0E-113 T 06-07-2017 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 SMART SM00387 311 420 2.2E-26 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 SMART SM00388 198 265 5.9E-21 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 Gene3D G3DSA:3.30.565.10 252 420 1.3E-41 T 06-07-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 SUPERFAMILY SSF47384 185 263 5.3E-20 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 363 1.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 1.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 377 1.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 420 1.7E-12 T 06-07-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDO28_RS08035 57f2ca51f2297cffc2e4b1e048e35c58 420 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 263 2.0E-18 T 06-07-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDO28_RS18485 c0e5f023683cc4b356e99bea33a0d32f 399 Pfam PF03743 Bacterial conjugation TrbI-like protein 212 388 1.2E-61 T 06-07-2017 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 Gene3D G3DSA:3.40.50.2000 249 456 3.4E-61 T 06-07-2017 CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 Hamap MF_00484 Glycogen synthase [glgA]. 1 475 45.936 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 Pfam PF08323 Starch synthase catalytic domain 2 235 2.3E-73 T 06-07-2017 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 Pfam PF00534 Glycosyl transferases group 1 292 442 3.2E-11 T 06-07-2017 IPR001296 Glycosyl transferase, family 1 CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 2.2E-159 T 06-07-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CDO28_RS29815 b849a6edf9c7b75c66afb64803a32a80 486 SUPERFAMILY SSF53756 1 476 3.73E-117 T 06-07-2017 CDO28_RS18255 3a38e4ae2e0eac94167a63ea37e7bb82 57 Pfam PF00872 Transposase, Mutator family 1 51 6.9E-10 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS25960 8295d0b7a9f8ea3b82a8efc80ad4dd87 50 Pfam PF06568 Domain of unknown function (DUF1127) 6 41 5.4E-11 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS07535 9bc150e5da6993cd4ec4ecd520efce2d 129 Pfam PF06059 Domain of Unknown Function (DUF930) 30 127 2.1E-39 T 06-07-2017 IPR009273 Protein of unknown function DUF930 CDO28_RS06430 75a63aafd06a28127046b184bfae2b08 633 Pfam PF02705 K+ potassium transporter 23 555 5.7E-206 T 06-07-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 CDO28_RS06430 75a63aafd06a28127046b184bfae2b08 633 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 14 633 33.105 T 06-07-2017 IPR023051 Potassium uptake protein, low affinity, Kup CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 Pfam PF16868 NMT1-like family 35 324 1.5E-96 T 06-07-2017 IPR011852 TRAP transporter solute receptor, TAXI family CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 Gene3D G3DSA:3.40.190.10 122 255 1.6E-32 T 06-07-2017 CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 7 324 1.3E-102 T 06-07-2017 IPR011852 TRAP transporter solute receptor, TAXI family CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 Gene3D G3DSA:3.40.190.10 30 113 3.5E-64 T 06-07-2017 CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 Gene3D G3DSA:3.40.190.10 256 325 3.5E-64 T 06-07-2017 CDO28_RS32040 653e33418bd3ce4dc15b6182552bb865 327 SUPERFAMILY SSF53850 30 326 1.17E-85 T 06-07-2017 CDO28_RS09870 a4c965526e708ece34954bf91edf07dc 466 Gene3D G3DSA:3.40.50.300 209 430 2.5E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09870 a4c965526e708ece34954bf91edf07dc 466 SUPERFAMILY SSF52540 92 416 7.74E-65 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09870 a4c965526e708ece34954bf91edf07dc 466 Gene3D G3DSA:3.30.450.90 108 205 2.2E-36 T 06-07-2017 CDO28_RS09870 a4c965526e708ece34954bf91edf07dc 466 Pfam PF00437 Type II/IV secretion system protein 112 387 2.4E-79 T 06-07-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 Gene3D G3DSA:3.40.50.300 3 221 2.1E-62 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 SUPERFAMILY SSF52540 11 227 4.18E-66 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 255 1.1E-103 T 06-07-2017 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 Pfam PF00005 ABC transporter 25 167 8.5E-32 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 SMART SM00382 34 217 3.9E-19 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS21960 0a7e3bd96f3133ea41c178311eaa524b 266 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS17730 2349e4102222d1ba15a39ee35819944a 302 Gene3D G3DSA:1.10.3720.10 67 289 7.2E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17730 2349e4102222d1ba15a39ee35819944a 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 288 1.5E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17730 2349e4102222d1ba15a39ee35819944a 302 SUPERFAMILY SSF161098 61 287 3.92E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07370 525cd41cecb5981f9bb4a418ceb596db 315 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 232 301 1.6E-15 T 06-07-2017 IPR001543 Surface presentation of antigen (SpoA) CDO28_RS07370 525cd41cecb5981f9bb4a418ceb596db 315 SUPERFAMILY SSF101801 230 310 2.88E-11 T 06-07-2017 IPR001543 Surface presentation of antigen (SpoA) CDO28_RS07370 525cd41cecb5981f9bb4a418ceb596db 315 Gene3D G3DSA:2.30.330.10 222 307 2.9E-8 T 06-07-2017 CDO28_RS16810 4d7ab2a6debc18a29e6320d5bf1ec1ab 633 SUPERFAMILY SSF52151 308 336 7.85E-9 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS16810 4d7ab2a6debc18a29e6320d5bf1ec1ab 633 SUPERFAMILY SSF52151 201 271 7.85E-9 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS16810 4d7ab2a6debc18a29e6320d5bf1ec1ab 633 SUPERFAMILY SSF52151 10 79 7.85E-9 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS16810 4d7ab2a6debc18a29e6320d5bf1ec1ab 633 SUPERFAMILY SSF52151 395 476 7.85E-9 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS16810 4d7ab2a6debc18a29e6320d5bf1ec1ab 633 Pfam PF01734 Patatin-like phospholipase 11 410 9.8E-19 T 06-07-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 CDO28_RS06620 90f69ec26b5c32700f6921001842e689 275 SUPERFAMILY SSF52821 1 156 3.14E-24 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS06620 90f69ec26b5c32700f6921001842e689 275 SMART SM00450 8 104 4.5E-5 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS06620 90f69ec26b5c32700f6921001842e689 275 Pfam PF00581 Rhodanese-like domain 10 100 4.2E-8 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS06620 90f69ec26b5c32700f6921001842e689 275 Pfam PF09828 Chromate resistance exported protein 122 254 5.3E-52 T 06-07-2017 IPR018634 Chromate resistance exported protein CDO28_RS06620 90f69ec26b5c32700f6921001842e689 275 Gene3D G3DSA:3.40.250.10 2 107 2.2E-16 T 06-07-2017 IPR001763 Rhodanese-like domain CDO28_RS07340 644d4a221c1b08f99d4b093dd3a5520e 126 PIRSF PIRSF002889 4 125 3.2E-15 T 06-07-2017 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 CDO28_RS07340 644d4a221c1b08f99d4b093dd3a5520e 126 Pfam PF00460 Flagella basal body rod protein 19 36 4.8E-5 T 06-07-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CDO28_RS20225 bbb6f56404196b31c5c0bb6834ef1a8c 582 SUPERFAMILY SSF52540 131 236 7.71E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20225 bbb6f56404196b31c5c0bb6834ef1a8c 582 SUPERFAMILY SSF52540 286 561 7.71E-35 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20225 bbb6f56404196b31c5c0bb6834ef1a8c 582 Gene3D G3DSA:3.40.50.300 388 522 2.8E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20225 bbb6f56404196b31c5c0bb6834ef1a8c 582 Gene3D G3DSA:3.40.50.300 153 232 2.8E-26 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20225 bbb6f56404196b31c5c0bb6834ef1a8c 582 Pfam PF01935 Domain of unknown function DUF87 152 264 1.3E-18 T 06-07-2017 IPR002789 Helicase HerA, central domain CDO28_RS24510 786ddc1252449c0e2a6804358d5eb4c1 305 SUPERFAMILY SSF161098 92 292 1.07E-13 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24510 786ddc1252449c0e2a6804358d5eb4c1 305 Gene3D G3DSA:1.10.3720.10 91 300 6.8E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24510 786ddc1252449c0e2a6804358d5eb4c1 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 305 3.0E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS05615 c2db6447216f72f69fc07c4d36096757 175 Gene3D G3DSA:3.30.70.1280 3 87 1.6E-28 T 06-07-2017 CDO28_RS05615 c2db6447216f72f69fc07c4d36096757 175 Pfam PF08002 Protein of unknown function (DUF1697) 3 133 6.7E-35 T 06-07-2017 IPR012545 Protein of unknown function DUF1697 CDO28_RS05615 c2db6447216f72f69fc07c4d36096757 175 SUPERFAMILY SSF160379 3 168 4.45E-45 T 06-07-2017 CDO28_RS05615 c2db6447216f72f69fc07c4d36096757 175 PIRSF PIRSF008502 1 171 4.5E-37 T 06-07-2017 IPR012545 Protein of unknown function DUF1697 CDO28_RS13985 43fb5e111c90d39573c9f2e527ffcb80 423 Pfam PF13480 Acetyltransferase (GNAT) domain 222 348 3.5E-22 T 06-07-2017 CDO28_RS13985 43fb5e111c90d39573c9f2e527ffcb80 423 SUPERFAMILY SSF55729 224 348 2.97E-10 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS30945 18069e6127ed1e85b418bf0cc2557f8a 397 SUPERFAMILY SSF103473 3 380 2.09E-56 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS30945 18069e6127ed1e85b418bf0cc2557f8a 397 Pfam PF07690 Major Facilitator Superfamily 10 324 8.1E-37 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS30945 18069e6127ed1e85b418bf0cc2557f8a 397 Gene3D G3DSA:1.20.1250.20 201 378 5.8E-14 T 06-07-2017 CDO28_RS30945 18069e6127ed1e85b418bf0cc2557f8a 397 Gene3D G3DSA:1.20.1250.20 5 183 3.1E-26 T 06-07-2017 CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 52 69 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 4.8E-29 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 4.3E-7 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 SUPERFAMILY SSF51735 6 261 3.81E-73 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 Gene3D G3DSA:3.40.50.720 4 261 1.8E-74 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS00875 6c55a784e0d6dcf6b256fce195f8a497 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 259 5.4E-56 T 06-07-2017 CDO28_RS24965 36821d2b7588db5d6bc9f3ab4fa358f2 238 SUPERFAMILY SSF49354 25 145 4.91E-15 T 06-07-2017 IPR008962 PapD-like CDO28_RS24965 36821d2b7588db5d6bc9f3ab4fa358f2 238 Gene3D G3DSA:2.60.40.360 36 144 2.3E-5 T 06-07-2017 IPR008962 PapD-like CDO28_RS24965 36821d2b7588db5d6bc9f3ab4fa358f2 238 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 144 2.0E-9 T 06-07-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CDO28_RS31495 016a395086557afbd29fd6ee9fafbf7a 173 Pfam PF11684 Protein of unknown function (DUF2380) 34 170 2.8E-44 T 06-07-2017 IPR021698 Protein of unknown function DUF2380 CDO28_RS12160 e3b3201ae57264f8dfc3a9682a19aba9 385 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 33 374 2.9E-108 T 06-07-2017 CDO28_RS12160 e3b3201ae57264f8dfc3a9682a19aba9 385 SUPERFAMILY SSF48208 6 383 1.47E-84 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS12160 e3b3201ae57264f8dfc3a9682a19aba9 385 Gene3D G3DSA:1.50.10.10 6 385 1.5E-82 T 06-07-2017 IPR012341 Six-hairpin glycosidase GO:0003824 CDO28_RS02310 58981b1156f18b407c38791aa3264129 489 Gene3D G3DSA:1.20.1250.20 285 476 1.3E-10 T 06-07-2017 CDO28_RS02310 58981b1156f18b407c38791aa3264129 489 Gene3D G3DSA:1.20.1250.20 39 216 4.6E-24 T 06-07-2017 CDO28_RS02310 58981b1156f18b407c38791aa3264129 489 SUPERFAMILY SSF103473 268 475 2.88E-46 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS02310 58981b1156f18b407c38791aa3264129 489 SUPERFAMILY SSF103473 20 219 2.88E-46 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS02310 58981b1156f18b407c38791aa3264129 489 Pfam PF07690 Major Facilitator Superfamily 41 430 9.2E-34 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS13515 201ceef3c5418bcbdd83b1075148ffc9 200 Pfam PF06577 Protein of unknown function (DUF1134) 42 200 8.9E-74 T 06-07-2017 IPR008325 Uncharacterised conserved protein UCP033924 CDO28_RS13515 201ceef3c5418bcbdd83b1075148ffc9 200 PIRSF PIRSF033924 1 200 1.1E-103 T 06-07-2017 IPR008325 Uncharacterised conserved protein UCP033924 CDO28_RS11320 fecc5769b1a56d5e3c83fb5383f1ad36 183 SUPERFAMILY SSF53254 9 177 1.48E-27 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS11320 fecc5769b1a56d5e3c83fb5383f1ad36 183 SMART SM00855 11 123 8.4E-5 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS11320 fecc5769b1a56d5e3c83fb5383f1ad36 183 Gene3D G3DSA:3.40.50.1240 7 177 6.5E-55 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS11320 fecc5769b1a56d5e3c83fb5383f1ad36 183 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 12 83 1.7E-8 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS30805 b859681e262582a6c0c3bc5e0c72e72a 385 Pfam PF11972 HTH DNA binding domain 332 385 1.5E-28 T 06-07-2017 IPR021068 HTH DNA binding domain CDO28_RS30805 b859681e262582a6c0c3bc5e0c72e72a 385 Pfam PF07756 Protein of unknown function (DUF1612) 198 323 5.3E-54 T 06-07-2017 IPR011670 Protein of unknown function DUF1612 CDO28_RS21780 f8f8343263d5bbf0fd458880dcdb859b 314 SUPERFAMILY SSF53822 22 310 2.2E-74 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS21780 f8f8343263d5bbf0fd458880dcdb859b 314 Gene3D G3DSA:3.40.50.2300 22 141 1.4E-27 T 06-07-2017 CDO28_RS21780 f8f8343263d5bbf0fd458880dcdb859b 314 Pfam PF13407 Periplasmic binding protein domain 23 289 1.1E-51 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS21780 f8f8343263d5bbf0fd458880dcdb859b 314 Gene3D G3DSA:3.40.50.2300 142 310 4.4E-48 T 06-07-2017 CDO28_RS20305 4b54167fef524406614ce7911e744d5f 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 45 1.1E-6 T 06-07-2017 IPR022789 Antitoxin ParD CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 Gene3D G3DSA:3.20.20.140 204 487 8.5E-32 T 06-07-2017 CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 Pfam PF07969 Amidohydrolase family 53 538 2.7E-130 T 06-07-2017 IPR013108 Amidohydrolase 3 CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 Gene3D G3DSA:2.30.40.10 6 90 1.1E-14 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 SUPERFAMILY SSF51338 7 65 1.14E-17 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 SUPERFAMILY SSF51338 496 539 1.14E-17 T 06-07-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 SUPERFAMILY SSF51556 64 127 1.52E-32 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS20955 8bef2ad466b1baf38de86a00048ee71f 541 SUPERFAMILY SSF51556 202 496 1.52E-32 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS09655 5c8f6308bf63b3e5580600babe6ac23b 156 Gene3D G3DSA:3.40.630.30 13 155 2.0E-23 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09655 5c8f6308bf63b3e5580600babe6ac23b 156 SUPERFAMILY SSF55729 12 143 1.39E-22 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09655 5c8f6308bf63b3e5580600babe6ac23b 156 Pfam PF00583 Acetyltransferase (GNAT) family 60 132 1.6E-11 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS10515 add984550f8d180c08821ee86c0743c8 141 Pfam PF11014 Protein of unknown function (DUF2852) 8 128 3.6E-42 T 06-07-2017 IPR021273 Protein of unknown function DUF2852 CDO28_RS07365 ccebfee657525527627a346620829b92 292 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 4.4E-109 T 06-07-2017 IPR022522 Flagellar motor stator, MotA CDO28_RS07365 ccebfee657525527627a346620829b92 292 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 06-07-2017 IPR000540 Flagellar motor protein MotA, conserved site CDO28_RS07365 ccebfee657525527627a346620829b92 292 Pfam PF01618 MotA/TolQ/ExbB proton channel family 132 226 1.5E-12 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Gene3D G3DSA:3.40.50.300 4 135 6.3E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Gene3D G3DSA:3.40.50.300 295 387 6.3E-44 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Gene3D G3DSA:3.40.50.300 672 791 3.8E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Gene3D G3DSA:3.40.50.300 405 524 3.8E-36 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Pfam PF13361 UvrD-like helicase C-terminal domain 665 786 4.5E-10 T 06-07-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 SUPERFAMILY SSF52540 4 170 1.45E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 SUPERFAMILY SSF52540 766 789 1.45E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 SUPERFAMILY SSF52540 285 718 1.45E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 385 1.7E-35 T 06-07-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 CDO28_RS18535 ddc40ea3980d595f1ba2fb1847b861ed 1048 Pfam PF12705 PD-(D/E)XK nuclease superfamily 896 1024 8.4E-6 T 06-07-2017 CDO28_RS13545 d969951e33ff8a7665f70f04f9a46208 91 Pfam PF06627 Protein of unknown function (DUF1153) 7 90 2.0E-42 T 06-07-2017 IPR009534 Protein of unknown function DUF1153 CDO28_RS13545 d969951e33ff8a7665f70f04f9a46208 91 Gene3D G3DSA:1.10.10.10 10 91 2.6E-39 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS13545 d969951e33ff8a7665f70f04f9a46208 91 SUPERFAMILY SSF48295 12 90 1.46E-20 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS27320 52e0334f2491e98298c7589db67ae93c 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 316 3.7E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 Pfam PF01343 Peptidase family S49 106 253 7.7E-40 T 06-07-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 Gene3D G3DSA:3.90.226.10 33 145 5.1E-40 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 Gene3D G3DSA:3.90.226.10 183 254 5.1E-40 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 51 251 5.3E-62 T 06-07-2017 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 SUPERFAMILY SSF52096 37 153 9.49E-39 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS08615 287c4a78a463bb437c43f59587b397df 319 SUPERFAMILY SSF52096 182 242 9.49E-39 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS33350 7cecaafbc898fb8f51c3548eb372ea54 545 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 103 265 1.8E-16 T 06-07-2017 CDO28_RS30525 a3b93a1b32c1ec851cba13c93a932efd 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 187 374 1.8E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30525 a3b93a1b32c1ec851cba13c93a932efd 375 Gene3D G3DSA:1.10.3720.10 160 374 3.9E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30525 a3b93a1b32c1ec851cba13c93a932efd 375 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 69 5.5E-10 T 06-07-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDO28_RS30525 a3b93a1b32c1ec851cba13c93a932efd 375 SUPERFAMILY SSF161098 164 360 1.28E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13790 5457a780be813c4b0084dfc89db0dfea 267 Pfam PF11306 Protein of unknown function (DUF3108) 27 265 1.4E-34 T 06-07-2017 IPR021457 Protein of unknown function DUF3108 CDO28_RS29680 9c0f0ae20bde89dd18b87d57c2dab68e 163 SUPERFAMILY SSF51182 1 162 4.27E-53 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS29680 9c0f0ae20bde89dd18b87d57c2dab68e 163 Gene3D G3DSA:2.60.120.480 3 162 2.7E-47 T 06-07-2017 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS29680 9c0f0ae20bde89dd18b87d57c2dab68e 163 PIRSF PIRSF017306 2 156 2.1E-33 T 06-07-2017 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS29680 9c0f0ae20bde89dd18b87d57c2dab68e 163 Hamap MF_00616 Ureidoglycolate lyase [allA]. 2 162 42.12 T 06-07-2017 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS29680 9c0f0ae20bde89dd18b87d57c2dab68e 163 Pfam PF04115 Ureidoglycolate lyase 3 161 2.1E-45 T 06-07-2017 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 CDO28_RS03200 f42da05bd34767e128d76712e0f5f455 208 SUPERFAMILY SSF81342 5 186 1.33E-32 T 06-07-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CDO28_RS03200 f42da05bd34767e128d76712e0f5f455 208 Pfam PF01292 Prokaryotic cytochrome b561 9 182 3.9E-26 T 06-07-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CDO28_RS30725 c324f123c115af05a2b25afbfd9554af 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 2.9E-148 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS10730 218648812f02e855533051bee4279932 561 Pfam PF07940 Heparinase II/III-like protein 311 556 2.4E-59 T 06-07-2017 IPR012480 Heparinase II/III-like GO:0016829 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 126 18.625 T 06-07-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-40 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 Gene3D G3DSA:2.60.15.10 4 91 1.1E-28 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 118 2.4E-28 T 06-07-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 8.6E-26 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS11900 e243d3d1156a3d7b1e1096e20538783d 134 SUPERFAMILY SSF51344 4 85 7.72E-23 T 06-07-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 CDO28_RS09260 48924cbdbc15c884b546e9ce6a4881b5 208 SMART SM00474 2 173 7.8E-34 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS09260 48924cbdbc15c884b546e9ce6a4881b5 208 Pfam PF01612 3'-5' exonuclease 22 172 9.7E-32 T 06-07-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDO28_RS09260 48924cbdbc15c884b546e9ce6a4881b5 208 SUPERFAMILY SSF53098 21 195 6.25E-49 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS09260 48924cbdbc15c884b546e9ce6a4881b5 208 Gene3D G3DSA:3.30.420.10 18 178 1.2E-20 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS08465 cff4e385a205c00238b247832d46a224 314 SUPERFAMILY SSF53590 5 313 6.93E-107 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS08465 cff4e385a205c00238b247832d46a224 314 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 5 305 1.8E-79 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS08465 cff4e385a205c00238b247832d46a224 314 Gene3D G3DSA:3.90.245.10 4 313 1.0E-115 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS16720 f55acd89a02d1038339cd08378568052 678 SUPERFAMILY SSF52540 141 522 1.38E-42 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16720 f55acd89a02d1038339cd08378568052 678 Pfam PF01935 Domain of unknown function DUF87 148 387 2.5E-50 T 06-07-2017 IPR002789 Helicase HerA, central domain CDO28_RS16720 f55acd89a02d1038339cd08378568052 678 Gene3D G3DSA:3.40.50.300 349 519 2.2E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16720 f55acd89a02d1038339cd08378568052 678 Gene3D G3DSA:3.40.50.300 148 232 2.2E-34 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04080 82f3cf845295f6928e81ab6a822f503c 204 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 168 1.5E-37 T 06-07-2017 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 Pfam PF01061 ABC-2 type transporter 11 218 6.4E-16 T 06-07-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 195 214 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 30 51 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 175 194 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 138 162 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 104 129 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS33760 15d9083462210763bac5b3bb7f013389 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 61 83 1.3E-13 T 06-07-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CDO28_RS18725 ddc2de2b8aae7cd4f10813df51116534 243 Pfam PF10028 Predicted integral membrane protein (DUF2270) 36 224 2.5E-72 T 06-07-2017 IPR014470 Uncharacterised conserved protein UCP01500 CDO28_RS18725 ddc2de2b8aae7cd4f10813df51116534 243 PIRSF PIRSF015000 1 243 4.8E-117 T 06-07-2017 IPR014470 Uncharacterised conserved protein UCP01500 CDO28_RS09205 583f955a173a3f26d29ee1f119df449a 421 Pfam PF07690 Major Facilitator Superfamily 47 191 3.3E-8 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS09205 583f955a173a3f26d29ee1f119df449a 421 Pfam PF07690 Major Facilitator Superfamily 206 383 9.5E-14 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS09205 583f955a173a3f26d29ee1f119df449a 421 SUPERFAMILY SSF103473 12 383 1.03E-35 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS09205 583f955a173a3f26d29ee1f119df449a 421 Gene3D G3DSA:1.20.1250.20 205 383 1.2E-17 T 06-07-2017 CDO28_RS09205 583f955a173a3f26d29ee1f119df449a 421 Gene3D G3DSA:1.20.1250.20 15 182 4.8E-15 T 06-07-2017 CDO28_RS05570 8bd5645a2fdc18253515713a142b9f0f 139 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 5 126 1.3E-30 T 06-07-2017 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CDO28_RS09040 1ca2d6e6807e71e4ea4c6726f030504f 169 Gene3D G3DSA:1.10.10.10 26 168 3.6E-26 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09040 1ca2d6e6807e71e4ea4c6726f030504f 169 Pfam PF12802 MarR family 60 121 5.0E-12 T 06-07-2017 CDO28_RS09040 1ca2d6e6807e71e4ea4c6726f030504f 169 SUPERFAMILY SSF46785 23 168 3.78E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06840 825df0b25d19bc4adb40381a11603ce0 400 SUPERFAMILY SSF103473 13 396 7.98E-38 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS06840 825df0b25d19bc4adb40381a11603ce0 400 Gene3D G3DSA:1.20.1250.20 13 204 2.0E-13 T 06-07-2017 CDO28_RS06840 825df0b25d19bc4adb40381a11603ce0 400 Pfam PF07690 Major Facilitator Superfamily 14 311 4.0E-13 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS06840 825df0b25d19bc4adb40381a11603ce0 400 Gene3D G3DSA:1.20.1250.20 222 395 1.5E-17 T 06-07-2017 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SUPERFAMILY SSF48452 180 418 6.96E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SUPERFAMILY SSF48452 64 113 6.96E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Pfam PF00515 Tetratricopeptide repeat 430 460 6.2E-7 T 06-07-2017 IPR001440 Tetratricopeptide repeat 1 GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Gene3D G3DSA:1.25.40.10 52 171 2.0E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Gene3D G3DSA:1.25.40.10 206 261 2.0E-4 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SUPERFAMILY SSF48452 386 566 4.55E-31 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Gene3D G3DSA:1.25.40.10 288 567 6.3E-56 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Pfam PF13432 Tetratricopeptide repeat 503 562 5.7E-6 T 06-07-2017 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 Pfam PF13432 Tetratricopeptide repeat 310 348 0.0035 T 06-07-2017 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 497 530 34.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 287 320 460.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 428 461 1.8E-5 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 531 564 25.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 462 496 76.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 321 354 99.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 355 388 100.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS06360 a075f20bf2fe207c24ae789ca74b9f09 609 SMART SM00028 49 82 180.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS31230 2f5deb8dd67c6a8831d142f1ff30a3ff 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 290 8.4E-37 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS34440 a78d6a4a1206e4089b3599c1aedf96bf 172 SUPERFAMILY SSF56214 33 152 7.98E-23 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS34440 a78d6a4a1206e4089b3599c1aedf96bf 172 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 33 140 7.4E-16 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS34440 a78d6a4a1206e4089b3599c1aedf96bf 172 Gene3D G3DSA:3.90.470.20 43 140 2.3E-22 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS34440 a78d6a4a1206e4089b3599c1aedf96bf 172 Gene3D G3DSA:3.90.470.20 4 42 1.5E-8 T 06-07-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CDO28_RS27790 5d483e6256570e8fd7a912dde0d203ff 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 62 5.8E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS27790 5d483e6256570e8fd7a912dde0d203ff 208 Gene3D G3DSA:1.10.357.10 18 184 4.0E-16 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS27790 5d483e6256570e8fd7a912dde0d203ff 208 SUPERFAMILY SSF46689 16 73 3.59E-10 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS27590 1f1948a613b055864f3ab7b9d26b84c7 330 Gene3D G3DSA:3.40.50.10750 136 302 3.5E-58 T 06-07-2017 CDO28_RS27590 1f1948a613b055864f3ab7b9d26b84c7 330 SUPERFAMILY SSF53659 1 329 7.81E-91 T 06-07-2017 CDO28_RS27590 1f1948a613b055864f3ab7b9d26b84c7 330 PIRSF PIRSF000428 1 330 5.3E-101 T 06-07-2017 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDO28_RS27590 1f1948a613b055864f3ab7b9d26b84c7 330 Pfam PF01515 Phosphate acetyl/butaryl transferase 5 326 3.1E-113 T 06-07-2017 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDO28_RS27590 1f1948a613b055864f3ab7b9d26b84c7 330 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 18 326 9.1E-106 T 06-07-2017 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDO28_RS32160 9bf2124d7016a39baced74ae493b76e8 201 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 37 183 7.4E-31 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS24425 46cbebf6b6c8fa503dadcdf7e106dba8 256 SUPERFAMILY SSF52096 3 254 1.76E-68 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS24425 46cbebf6b6c8fa503dadcdf7e106dba8 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 1.3E-47 T 06-07-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CDO28_RS24425 46cbebf6b6c8fa503dadcdf7e106dba8 256 Gene3D G3DSA:3.90.226.10 3 251 4.9E-67 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS29215 d720b2940469f1e3654c3b0896da5f89 82 Pfam PF06169 Protein of unknown function (DUF982) 8 79 7.4E-23 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS14310 95ab5259f00d21adb9ad200b68401657 344 Gene3D G3DSA:3.40.190.10 125 251 2.2E-22 T 06-07-2017 CDO28_RS14310 95ab5259f00d21adb9ad200b68401657 344 SUPERFAMILY SSF53850 38 292 8.22E-42 T 06-07-2017 CDO28_RS14310 95ab5259f00d21adb9ad200b68401657 344 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 41 333 1.7E-103 T 06-07-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 CDO28_RS14310 95ab5259f00d21adb9ad200b68401657 344 Pfam PF09084 NMT1/THI5 like 66 266 2.3E-24 T 06-07-2017 IPR015168 SsuA/THI5-like CDO28_RS14725 cfc3a6aa3ab3c82db594389bcb956ddf 185 Pfam PF03358 NADPH-dependent FMN reductase 2 144 1.0E-32 T 06-07-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDO28_RS14725 cfc3a6aa3ab3c82db594389bcb956ddf 185 SUPERFAMILY SSF52218 3 177 1.68E-45 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS14725 cfc3a6aa3ab3c82db594389bcb956ddf 185 Gene3D G3DSA:3.40.50.360 1 181 8.4E-50 T 06-07-2017 IPR029039 Flavoprotein-like domain CDO28_RS19275 1c82f5a46f009f768f245d660801e47a 218 Gene3D G3DSA:3.40.50.1110 4 216 4.2E-60 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS19275 1c82f5a46f009f768f245d660801e47a 218 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 9 201 3.6E-16 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS19275 1c82f5a46f009f768f245d660801e47a 218 SUPERFAMILY SSF52266 5 216 1.13E-26 T 06-07-2017 IPR013830 SGNH hydrolase-type esterase domain CDO28_RS17920 fb6125d562ab846e80e18b3a6fa4944d 48 Gene3D G3DSA:1.10.10.60 6 47 1.0E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17920 fb6125d562ab846e80e18b3a6fa4944d 48 SUPERFAMILY SSF46689 1 48 3.76E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17920 fb6125d562ab846e80e18b3a6fa4944d 48 Pfam PF13518 Helix-turn-helix domain 8 48 6.1E-8 T 06-07-2017 CDO28_RS15725 8a225a4f1e872d9f74b9a908d5755c56 522 PIRSF PIRSF500217 1 522 5.9E-119 T 06-07-2017 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 CDO28_RS15725 8a225a4f1e872d9f74b9a908d5755c56 522 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 153 378 1.6E-13 T 06-07-2017 IPR004299 Membrane bound O-acyl transferase, MBOAT CDO28_RS15725 8a225a4f1e872d9f74b9a908d5755c56 522 PIRSF PIRSF016636 1 522 6.1E-117 T 06-07-2017 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CDO28_RS02125 4293f7f49bfec5782ab81d60d7c3c0e7 346 SUPERFAMILY SSF50685 92 187 1.83E-8 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS02125 4293f7f49bfec5782ab81d60d7c3c0e7 346 Pfam PF03330 Lytic transglycolase 96 184 1.2E-21 T 06-07-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDO28_RS02125 4293f7f49bfec5782ab81d60d7c3c0e7 346 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 97 189 6.0E-37 T 06-07-2017 IPR012997 Rare lipoprotein A CDO28_RS01775 49c801286a491b8d2d4a8f246811d609 125 Pfam PF13392 HNH endonuclease 52 97 8.6E-13 T 06-07-2017 IPR003615 HNH nuclease CDO28_RS01775 49c801286a491b8d2d4a8f246811d609 125 SUPERFAMILY SSF54060 37 103 2.35E-10 T 06-07-2017 CDO28_RS29475 cb0acfd2d16e12746f0f9f0b573a0997 243 Gene3D G3DSA:2.40.440.10 89 233 1.7E-30 T 06-07-2017 CDO28_RS29475 cb0acfd2d16e12746f0f9f0b573a0997 243 SUPERFAMILY SSF141523 171 233 8.24E-30 T 06-07-2017 CDO28_RS29475 cb0acfd2d16e12746f0f9f0b573a0997 243 SUPERFAMILY SSF141523 91 141 8.24E-30 T 06-07-2017 CDO28_RS29475 cb0acfd2d16e12746f0f9f0b573a0997 243 Pfam PF03734 L,D-transpeptidase catalytic domain 95 232 4.8E-14 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS07265 c3d64c8f5099d5ad86d8e899fa08cc0d 394 Pfam PF00691 OmpA family 288 376 5.2E-7 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS07265 c3d64c8f5099d5ad86d8e899fa08cc0d 394 SUPERFAMILY SSF103088 284 389 4.32E-19 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS07265 c3d64c8f5099d5ad86d8e899fa08cc0d 394 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 20 68 1.5E-18 T 06-07-2017 IPR025713 Motility protein B, N-terminal domain CDO28_RS07265 c3d64c8f5099d5ad86d8e899fa08cc0d 394 Gene3D G3DSA:3.30.1330.60 285 389 4.4E-16 T 06-07-2017 IPR006665 OmpA-like domain CDO28_RS31720 a6ae34999692389aee13b9a6873838d3 324 Pfam PF12277 Protein of unknown function (DUF3618) 8 52 2.2E-11 T 06-07-2017 IPR022062 Protein of unknown function DUF3618 CDO28_RS29545 6f9c07f978459e31d3eef50e7cd8a325 88 Gene3D G3DSA:1.10.1200.10 3 81 1.3E-15 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS29545 6f9c07f978459e31d3eef50e7cd8a325 88 SUPERFAMILY SSF47336 5 81 1.18E-10 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS11490 decd5e711c5ea25bd49bf57d2066ed60 537 Pfam PF00817 impB/mucB/samB family 54 170 3.6E-8 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS11490 decd5e711c5ea25bd49bf57d2066ed60 537 Gene3D G3DSA:3.30.1490.100 265 349 5.3E-4 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS11490 decd5e711c5ea25bd49bf57d2066ed60 537 SUPERFAMILY SSF56672 41 257 1.56E-38 T 06-07-2017 CDO28_RS11490 decd5e711c5ea25bd49bf57d2066ed60 537 Gene3D G3DSA:1.10.150.20 196 257 3.8E-5 T 06-07-2017 CDO28_RS02790 b099031eb4b281d5786c88c64fd0786f 251 Pfam PF10691 Protein of unknown function (DUF2497) 182 247 9.6E-24 T 06-07-2017 IPR019632 Protein of unknown function DUF2497 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 Gene3D G3DSA:3.20.20.70 7 311 1.5E-73 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 Gene3D G3DSA:3.30.70.20 324 403 2.6E-18 T 06-07-2017 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 5 322 1.0E-48 T 06-07-2017 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 SUPERFAMILY SSF54862 340 403 8.37E-15 T 06-07-2017 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 Pfam PF01180 Dihydroorotate dehydrogenase 5 307 6.7E-26 T 06-07-2017 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 347 358 - T 06-07-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 SUPERFAMILY SSF51395 1 323 2.3E-69 T 06-07-2017 CDO28_RS14970 f0793959d46e8fb7695ec2604bbc1ede 437 Pfam PF14697 4Fe-4S dicluster domain 340 400 5.2E-24 T 06-07-2017 CDO28_RS28525 f157f75c5357d66a7aa29da8bf9b9de3 161 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 57 63 - T 06-07-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 CDO28_RS28525 f157f75c5357d66a7aa29da8bf9b9de3 161 Pfam PF01070 FMN-dependent dehydrogenase 28 160 7.6E-59 T 06-07-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 CDO28_RS28525 f157f75c5357d66a7aa29da8bf9b9de3 161 SUPERFAMILY SSF51395 26 158 1.59E-43 T 06-07-2017 CDO28_RS28525 f157f75c5357d66a7aa29da8bf9b9de3 161 Gene3D G3DSA:3.20.20.70 29 159 3.3E-59 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS09495 9c62348539c2aa880b3f2063b38698f0 89 Pfam PF04972 BON domain 18 85 1.8E-12 T 06-07-2017 IPR007055 BON domain CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 Gene3D G3DSA:3.90.180.10 1 147 2.6E-39 T 06-07-2017 IPR011032 GroES-like CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 SUPERFAMILY SSF50129 1 144 4.72E-34 T 06-07-2017 IPR011032 GroES-like CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 SUPERFAMILY SSF51735 112 287 1.86E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 2.4E-9 T 06-07-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 SMART SM00829 10 320 8.3E-20 T 06-07-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 Pfam PF00107 Zinc-binding dehydrogenase 151 256 1.1E-22 T 06-07-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 06-07-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CDO28_RS20640 ffb084cf698dbe8d443fa0668577592c 322 Gene3D G3DSA:3.40.50.720 148 251 1.8E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS19415 faad8ed08226f4f6fe0fe74bde62a8ca 47 Pfam PF12833 Helix-turn-helix domain 3 39 8.8E-8 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS19415 faad8ed08226f4f6fe0fe74bde62a8ca 47 Gene3D G3DSA:1.10.10.60 2 40 1.2E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS19415 faad8ed08226f4f6fe0fe74bde62a8ca 47 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 22 38 9.8E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS19415 faad8ed08226f4f6fe0fe74bde62a8ca 47 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 7 22 9.8E-6 T 06-07-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDO28_RS19415 faad8ed08226f4f6fe0fe74bde62a8ca 47 SUPERFAMILY SSF46689 2 40 1.08E-8 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS20045 6f7e5fb86d0916f5b06cbb009d6cf704 282 Pfam PF06629 MltA-interacting protein MipA 63 282 2.6E-45 T 06-07-2017 IPR010583 MltA-interacting MipA CDO28_RS20045 6f7e5fb86d0916f5b06cbb009d6cf704 282 SUPERFAMILY SSF56935 104 253 8.42E-5 T 06-07-2017 CDO28_RS18140 9a57077c399b9e4e78d9d61ec650dc88 273 SUPERFAMILY SSF52768 19 264 3.42E-38 T 06-07-2017 CDO28_RS18140 9a57077c399b9e4e78d9d61ec650dc88 273 Gene3D G3DSA:3.40.800.10 84 269 1.2E-33 T 06-07-2017 IPR023696 Ureohydrolase domain CDO28_RS18140 9a57077c399b9e4e78d9d61ec650dc88 273 Pfam PF00491 Arginase family 70 265 2.1E-22 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS18140 9a57077c399b9e4e78d9d61ec650dc88 273 PRINTS PR00116 Arginase signature 115 142 9.4E-7 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS18140 9a57077c399b9e4e78d9d61ec650dc88 273 PRINTS PR00116 Arginase signature 92 107 9.4E-7 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS23200 9ff6d2a13c1d28692fb01e567ab3eb33 196 Pfam PF02586 SOS response associated peptidase (SRAP) 1 195 9.8E-21 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS23200 9ff6d2a13c1d28692fb01e567ab3eb33 196 Gene3D G3DSA:3.90.1680.10 1 195 1.0E-30 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS23200 9ff6d2a13c1d28692fb01e567ab3eb33 196 SUPERFAMILY SSF143081 2 195 1.02E-39 T 06-07-2017 IPR003738 SOS response associated peptidase (SRAP) CDO28_RS29985 cd43b8c099798a4186d925fe45264a6d 356 Pfam PF16113 Enoyl-CoA hydratase/isomerase 19 342 5.5E-118 T 06-07-2017 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 CDO28_RS29985 cd43b8c099798a4186d925fe45264a6d 356 SUPERFAMILY SSF52096 254 332 2.6E-63 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS29985 cd43b8c099798a4186d925fe45264a6d 356 SUPERFAMILY SSF52096 5 191 2.6E-63 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS29985 cd43b8c099798a4186d925fe45264a6d 356 Gene3D G3DSA:3.90.226.10 5 202 9.9E-54 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS29985 cd43b8c099798a4186d925fe45264a6d 356 Gene3D G3DSA:3.90.226.10 259 329 9.9E-54 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS28165 0a0df45308ab1b3d187f3f494374f363 309 Gene3D G3DSA:3.90.550.10 10 240 1.5E-23 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28165 0a0df45308ab1b3d187f3f494374f363 309 SUPERFAMILY SSF53448 6 259 8.44E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28165 0a0df45308ab1b3d187f3f494374f363 309 Pfam PF00535 Glycosyl transferase family 2 10 169 2.3E-24 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS26670 604d3494c87f67ce6ffcee85b678f313 430 PIRSF PIRSF005353 1 430 1.4E-177 T 06-07-2017 IPR026033 Purine permease PbuG-like CDO28_RS26670 604d3494c87f67ce6ffcee85b678f313 430 Pfam PF00860 Permease family 18 388 1.9E-52 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS21425 50fb75ead0c2253c5ec44742ecaa42cf 226 Pfam PF09929 Putative PD-(D/E)XK phosphodiesterase (DUF2161) 102 209 2.6E-38 T 06-07-2017 IPR018679 Putative PD-(D/E)XK phosphodiesterase (DUF2161) CDO28_RS25895 97c32a149262774ccf0ef79b6879a178 378 SUPERFAMILY SSF56300 68 289 1.68E-39 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS25895 97c32a149262774ccf0ef79b6879a178 378 Pfam PF00149 Calcineurin-like phosphoesterase 69 279 1.3E-13 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS25895 97c32a149262774ccf0ef79b6879a178 378 Gene3D G3DSA:3.60.21.10 65 344 8.6E-29 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS11050 4c98a16392d345c1f0f2c576d6777050 189 SMART SM01058 13 123 1.0E-32 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS11050 4c98a16392d345c1f0f2c576d6777050 189 SUPERFAMILY SSF141259 10 78 4.18E-15 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS11050 4c98a16392d345c1f0f2c576d6777050 189 Pfam PF02559 CarD-like/TRCF domain 14 121 3.3E-13 T 06-07-2017 IPR003711 CarD-like/TRCF domain CDO28_RS28405 7e2a1a073dc7f411dc77005948894b28 347 SUPERFAMILY SSF51679 1 339 1.65E-81 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS28405 7e2a1a073dc7f411dc77005948894b28 347 Gene3D G3DSA:3.20.20.30 1 345 5.3E-93 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS28405 7e2a1a073dc7f411dc77005948894b28 347 Pfam PF00296 Luciferase-like monooxygenase 5 301 1.1E-50 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS28405 7e2a1a073dc7f411dc77005948894b28 347 TIGRFAM TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family 2 338 8.0E-156 T 06-07-2017 IPR022290 Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative CDO28_RS16660 6f14abb8440bcd92d83cc7f4a14c0e62 201 Gene3D G3DSA:3.40.30.10 2 88 9.1E-19 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16660 6f14abb8440bcd92d83cc7f4a14c0e62 201 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 79 9.3E-11 T 06-07-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDO28_RS16660 6f14abb8440bcd92d83cc7f4a14c0e62 201 SUPERFAMILY SSF52833 1 78 1.91E-17 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS16660 6f14abb8440bcd92d83cc7f4a14c0e62 201 Gene3D G3DSA:1.20.1050.10 89 166 8.1E-9 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS16660 6f14abb8440bcd92d83cc7f4a14c0e62 201 SUPERFAMILY SSF47616 72 179 1.14E-10 T 06-07-2017 IPR010987 Glutathione S-transferase, C-terminal-like CDO28_RS27175 d8c73470a50e06ee769fd5a72d491dac 281 Gene3D G3DSA:3.40.50.150 56 204 5.7E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS27175 d8c73470a50e06ee769fd5a72d491dac 281 SUPERFAMILY SSF53335 58 253 2.61E-26 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS27175 d8c73470a50e06ee769fd5a72d491dac 281 Pfam PF08241 Methyltransferase domain 75 191 1.3E-16 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS30655 3e30f47921c21c10b52f891b35d78c58 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 318 2.9E-31 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS22155 057934bd01d18b836009d345447e5eb4 247 Pfam PF01066 CDP-alcohol phosphatidyltransferase 58 124 6.8E-9 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS01765 8a725b4e5ce726c63ff4d53e2e8b0bdc 114 Pfam PF00893 Small Multidrug Resistance protein 4 94 2.5E-22 T 06-07-2017 IPR000390 Small multidrug resistance protein family GO:0016021 CDO28_RS01765 8a725b4e5ce726c63ff4d53e2e8b0bdc 114 SUPERFAMILY SSF103481 6 106 1.31E-17 T 06-07-2017 CDO28_RS25620 9709b19cd56be822be61491f127e7827 302 Pfam PF13673 Acetyltransferase (GNAT) domain 81 146 3.0E-6 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS25620 9709b19cd56be822be61491f127e7827 302 Gene3D G3DSA:3.40.630.30 22 141 2.3E-15 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS25620 9709b19cd56be822be61491f127e7827 302 SUPERFAMILY SSF55729 22 273 1.79E-28 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS18455 1e2b7acd6166140b3fa3e2f90aa0370d 834 SUPERFAMILY SSF52540 397 743 1.5E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18455 1e2b7acd6166140b3fa3e2f90aa0370d 834 SMART SM00382 440 711 0.0045 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS18455 1e2b7acd6166140b3fa3e2f90aa0370d 834 Gene3D G3DSA:3.40.50.300 640 708 2.2E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18455 1e2b7acd6166140b3fa3e2f90aa0370d 834 Gene3D G3DSA:3.40.50.300 439 551 2.2E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18455 1e2b7acd6166140b3fa3e2f90aa0370d 834 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 182 388 2.4E-13 T 06-07-2017 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 CDO28_RS05510 b9a23f2ec18522f85f994920b37e3a7d 351 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 94 146 4.5E-11 T 06-07-2017 IPR019285 Protein of unknown function DUF2336 CDO28_RS15690 c583b154fae4a587b7357c0c29750a6c 262 Pfam PF04402 Protein of unknown function (DUF541) 53 258 1.1E-48 T 06-07-2017 IPR007497 Protein of unknown function DUF541 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.30.9.10 98 151 2.2E-7 T 06-07-2017 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.30.9.10 308 371 2.2E-7 T 06-07-2017 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.30.9.10 231 274 2.2E-7 T 06-07-2017 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.50.50.60 152 230 6.5E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.50.50.60 12 94 6.5E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Gene3D G3DSA:3.50.50.60 373 432 6.5E-68 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 SUPERFAMILY SSF51905 373 431 6.04E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 SUPERFAMILY SSF51905 18 231 6.04E-58 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS25705 dcbd6f884b2f792b7e6d2c59fd6132fb 441 Pfam PF01266 FAD dependent oxidoreductase 19 412 3.4E-64 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS23365 a9eb4cbff1926294bca20429a4baaf6b 316 Pfam PF11453 Protein of unknown function (DUF2950) 47 314 8.4E-98 T 06-07-2017 IPR021556 Protein of unknown function DUF2950 CDO28_RS25075 cc1a735e5042b064c590fa6b42a79191 473 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 2 473 1.1E-153 T 06-07-2017 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CDO28_RS25075 cc1a735e5042b064c590fa6b42a79191 473 PIRSF PIRSF006060 1 471 4.0E-39 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS25075 cc1a735e5042b064c590fa6b42a79191 473 Pfam PF13520 Amino acid permease 5 413 9.0E-62 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS15550 9da4395d460b62fb678d92878c60bbf3 210 Pfam PF08239 Bacterial SH3 domain 42 93 1.1E-9 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS15550 9da4395d460b62fb678d92878c60bbf3 210 Pfam PF06823 Protein of unknown function (DUF1236) 151 209 5.6E-19 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS09215 308bf05f5a67f0821df710c18d22105d 91 Pfam PF07362 Post-segregation antitoxin CcdA 21 91 1.5E-22 T 06-07-2017 IPR009956 Post-segregation antitoxin CcdA CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 Gene3D G3DSA:3.20.20.100 12 270 2.4E-78 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 SUPERFAMILY SSF51430 7 273 3.93E-80 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 PRINTS PR00069 Aldo-keto reductase signature 43 67 1.9E-18 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 PRINTS PR00069 Aldo-keto reductase signature 99 117 1.9E-18 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 PRINTS PR00069 Aldo-keto reductase signature 129 146 1.9E-18 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 PRINTS PR00069 Aldo-keto reductase signature 203 227 1.9E-18 T 06-07-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CDO28_RS16735 860e452616c990c4c1773fa65d5781d1 281 Pfam PF00248 Aldo/keto reductase family 19 268 3.6E-55 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS20890 48897bd1f977945592a614ae9d67ae1e 295 SUPERFAMILY SSF74650 2 287 1.0E-43 T 06-07-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CDO28_RS20890 48897bd1f977945592a614ae9d67ae1e 295 Pfam PF01263 Aldose 1-epimerase 3 265 3.8E-25 T 06-07-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CDO28_RS20890 48897bd1f977945592a614ae9d67ae1e 295 Gene3D G3DSA:2.70.98.10 6 285 7.4E-11 T 06-07-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 CDO28_RS14855 fa7de9af2a645a3daa1e6e6a939910b5 42 Gene3D G3DSA:1.10.10.60 9 42 2.7E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS17125 5a13f3c6bcd8a925f6eb8dd8afa95f1b 256 Gene3D G3DSA:3.40.50.300 1 223 1.8E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17125 5a13f3c6bcd8a925f6eb8dd8afa95f1b 256 SUPERFAMILY SSF52540 3 223 9.49E-50 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS17125 5a13f3c6bcd8a925f6eb8dd8afa95f1b 256 PIRSF PIRSF021497 1 225 6.8E-95 T 06-07-2017 IPR015124 Trehalose 2-sulfotransferase GO:0016740 CDO28_RS17125 5a13f3c6bcd8a925f6eb8dd8afa95f1b 256 Pfam PF09037 Stf0 sulphotransferase 4 217 2.9E-19 T 06-07-2017 IPR024628 Sulphotransferase Stf0, domain CDO28_RS16555 d8664e261bd9eea2551448ad163b7b2c 236 SUPERFAMILY SSF53271 12 226 7.03E-46 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS16555 d8664e261bd9eea2551448ad163b7b2c 236 Gene3D G3DSA:3.40.50.2020 11 76 9.6E-40 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS16555 d8664e261bd9eea2551448ad163b7b2c 236 Gene3D G3DSA:3.40.50.2020 110 221 9.6E-40 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS16555 d8664e261bd9eea2551448ad163b7b2c 236 Pfam PF00156 Phosphoribosyl transferase domain 22 211 2.9E-22 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS07925 533cd15c0ea0e0b935f9fab0cd814408 175 SUPERFAMILY SSF46785 4 126 3.08E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07925 533cd15c0ea0e0b935f9fab0cd814408 175 Gene3D G3DSA:1.10.10.10 4 107 6.9E-27 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07925 533cd15c0ea0e0b935f9fab0cd814408 175 Pfam PF01638 HxlR-like helix-turn-helix 18 105 3.2E-17 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 SMART SM00342 202 285 1.0E-23 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 Gene3D G3DSA:1.10.10.60 189 239 3.5E-16 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 Pfam PF12833 Helix-turn-helix domain 208 285 2.1E-19 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 SUPERFAMILY SSF46689 189 236 7.62E-11 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 SUPERFAMILY SSF46689 238 285 1.03E-9 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS34130 0160f759655ddac371ebee0329878c23 285 Gene3D G3DSA:1.10.10.60 240 285 5.9E-13 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21895 8458b8b4ce32acfb5ba08c141bfd5f71 183 SUPERFAMILY SSF46689 63 96 7.98E-6 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21895 8458b8b4ce32acfb5ba08c141bfd5f71 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 66 93 7.7E-5 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS21895 8458b8b4ce32acfb5ba08c141bfd5f71 183 Gene3D G3DSA:1.10.357.10 64 154 1.9E-8 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS19620 010a04a0dad1bea7afb155949fb645ed 177 Pfam PF16694 Cytochrome P460 40 173 4.1E-33 T 06-07-2017 IPR032033 Cytochrome P460 CDO28_RS19215 49de69a4babc7845491afc03755cbd91 230 Pfam PF01965 DJ-1/PfpI family 33 218 1.6E-16 T 06-07-2017 IPR002818 DJ-1/PfpI CDO28_RS19215 49de69a4babc7845491afc03755cbd91 230 Gene3D G3DSA:3.40.50.880 7 228 1.7E-79 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS19215 49de69a4babc7845491afc03755cbd91 230 SUPERFAMILY SSF52317 9 228 2.47E-67 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS14740 04ae13b219c9748708830588915b4dbf 102 Pfam PF08808 RES domain 27 95 3.1E-6 T 06-07-2017 IPR014914 RES domain CDO28_RS27245 0241d22a29163ae07a0df8bf7efd4093 356 Gene3D G3DSA:3.40.50.720 1 190 8.6E-63 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27245 0241d22a29163ae07a0df8bf7efd4093 356 Gene3D G3DSA:3.90.25.10 191 337 7.2E-48 T 06-07-2017 CDO28_RS27245 0241d22a29163ae07a0df8bf7efd4093 356 SUPERFAMILY SSF51735 1 336 1.85E-92 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27245 0241d22a29163ae07a0df8bf7efd4093 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 1.7E-89 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27245 0241d22a29163ae07a0df8bf7efd4093 356 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 338 3.6E-137 T 06-07-2017 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 CDO28_RS33530 1ef315e9de69d818ccaece5318f18ef9 264 SUPERFAMILY SSF52540 84 261 6.26E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33530 1ef315e9de69d818ccaece5318f18ef9 264 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 87 255 1.6E-10 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS33530 1ef315e9de69d818ccaece5318f18ef9 264 Gene3D G3DSA:3.40.50.300 84 259 4.5E-27 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24115 0aba1aab0ef3cbf94d6db32c367d6524 223 Pfam PF04335 VirB8 protein 13 220 3.8E-63 T 06-07-2017 IPR007430 Bacterial virulence protein VirB8 GO:0016020 CDO28_RS24115 0aba1aab0ef3cbf94d6db32c367d6524 223 SUPERFAMILY SSF54427 85 222 9.2E-42 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS24115 0aba1aab0ef3cbf94d6db32c367d6524 223 PIRSF PIRSF003299 1 223 3.9E-99 T 06-07-2017 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 CDO28_RS21090 40c9a01ce05255836baeaf978cdcfdab 157 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 118 7.3E-49 T 06-07-2017 IPR028973 PhnB-like CDO28_RS21090 40c9a01ce05255836baeaf978cdcfdab 157 PIRSF PIRSF021700 1 157 9.1E-68 T 06-07-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase CDO28_RS21090 40c9a01ce05255836baeaf978cdcfdab 157 SUPERFAMILY SSF54593 3 155 5.33E-48 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS21090 40c9a01ce05255836baeaf978cdcfdab 157 Gene3D G3DSA:3.10.180.10 1 128 6.8E-43 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS19515 8ca07dcd9a2d8010427237c34dcf441f 157 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 15 149 2.7E-11 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS24105 8866d2d15cb0f31e12f82128d3191e77 390 Pfam PF03743 Bacterial conjugation TrbI-like protein 184 357 4.7E-52 T 06-07-2017 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI CDO28_RS26580 1c8c4fb4ad82507a4756d4bd76cd47dd 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 325 3.7E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26580 1c8c4fb4ad82507a4756d4bd76cd47dd 332 Gene3D G3DSA:1.10.3720.10 94 310 7.5E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26580 1c8c4fb4ad82507a4756d4bd76cd47dd 332 SUPERFAMILY SSF161098 97 308 7.3E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33475 047a124529ea301a153cf38ce1e31d9c 339 SUPERFAMILY SSF53448 4 253 1.5E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33475 047a124529ea301a153cf38ce1e31d9c 339 Pfam PF00535 Glycosyl transferase family 2 7 117 3.0E-26 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS33475 047a124529ea301a153cf38ce1e31d9c 339 Gene3D G3DSA:3.90.550.10 8 245 3.7E-35 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS17060 ebcade3527699e3165486f3ca78655c9 442 Pfam PF07995 Glucose / Sorbosone dehydrogenase 163 368 3.9E-12 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS17060 ebcade3527699e3165486f3ca78655c9 442 Gene3D G3DSA:2.120.10.30 68 441 8.3E-63 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS17060 ebcade3527699e3165486f3ca78655c9 442 SUPERFAMILY SSF50952 132 440 3.53E-38 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS17060 ebcade3527699e3165486f3ca78655c9 442 SUPERFAMILY SSF50952 69 102 3.53E-38 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS14315 55f2f5a04617a250cd3985df84aa642b 479 SUPERFAMILY SSF103473 13 206 2.09E-53 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS14315 55f2f5a04617a250cd3985df84aa642b 479 SUPERFAMILY SSF103473 255 466 2.09E-53 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS14315 55f2f5a04617a250cd3985df84aa642b 479 Gene3D G3DSA:1.20.1250.20 25 203 2.8E-25 T 06-07-2017 CDO28_RS14315 55f2f5a04617a250cd3985df84aa642b 479 Gene3D G3DSA:1.20.1250.20 290 467 5.2E-14 T 06-07-2017 CDO28_RS14315 55f2f5a04617a250cd3985df84aa642b 479 Pfam PF07690 Major Facilitator Superfamily 28 312 2.1E-34 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS30500 7f19b7e23be3ad39673caba1ada11e26 332 Gene3D G3DSA:1.20.1260.10 36 290 2.1E-103 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS30500 7f19b7e23be3ad39673caba1ada11e26 332 Pfam PF05138 Phenylacetic acid catabolic protein 36 310 1.2E-104 T 06-07-2017 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 CDO28_RS30500 7f19b7e23be3ad39673caba1ada11e26 332 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 26 313 1.2E-163 T 06-07-2017 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.14+1.14.13.149|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176 CDO28_RS30500 7f19b7e23be3ad39673caba1ada11e26 332 SUPERFAMILY SSF47240 46 288 1.76E-84 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS12275 7b462cf82207a5652d1918f89f26817c 255 SUPERFAMILY SSF51695 2 242 1.06E-47 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS12275 7b462cf82207a5652d1918f89f26817c 255 Gene3D G3DSA:3.20.20.190 1 243 4.9E-47 T 06-07-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CDO28_RS12275 7b462cf82207a5652d1918f89f26817c 255 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 236 1.7E-21 T 06-07-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CDO28_RS32385 c5848f481798185ef58f77be13fb8947 243 SUPERFAMILY SSF52096 74 233 1.29E-16 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS32385 c5848f481798185ef58f77be13fb8947 243 Gene3D G3DSA:3.90.226.10 106 174 1.6E-9 T 06-07-2017 IPR029045 ClpP/crotonase-like domain CDO28_RS19430 e864dc807f159003c2c40e45d59e5923 87 Gene3D G3DSA:3.90.190.10 8 52 7.0E-10 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS19430 e864dc807f159003c2c40e45d59e5923 87 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 23 33 - T 06-07-2017 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 CDO28_RS19430 e864dc807f159003c2c40e45d59e5923 87 SUPERFAMILY SSF52799 11 49 2.69E-10 T 06-07-2017 IPR029021 Protein-tyrosine phosphatase-like CDO28_RS19430 e864dc807f159003c2c40e45d59e5923 87 Pfam PF13350 Tyrosine phosphatase family 14 49 3.2E-8 T 06-07-2017 IPR026893 Tyrosine/serine-protein phosphatase IphP-type CDO28_RS31730 d850d3bc526440d46921239a805d3e5d 451 Gene3D G3DSA:3.40.190.10 335 379 4.9E-30 T 06-07-2017 CDO28_RS31730 d850d3bc526440d46921239a805d3e5d 451 Gene3D G3DSA:3.40.190.10 48 165 4.9E-30 T 06-07-2017 CDO28_RS31730 d850d3bc526440d46921239a805d3e5d 451 Pfam PF13416 Bacterial extracellular solute-binding protein 70 348 5.1E-36 T 06-07-2017 CDO28_RS31730 d850d3bc526440d46921239a805d3e5d 451 SUPERFAMILY SSF53850 58 420 7.85E-68 T 06-07-2017 CDO28_RS31730 d850d3bc526440d46921239a805d3e5d 451 Gene3D G3DSA:3.40.190.10 166 334 1.6E-38 T 06-07-2017 CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 Gene3D G3DSA:3.40.640.10 68 344 2.5E-82 T 06-07-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 SUPERFAMILY SSF53383 12 448 3.73E-115 T 06-07-2017 IPR015424 Pyridoxal phosphate-dependent transferase CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 Gene3D G3DSA:3.90.1150.10 347 451 3.3E-37 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 Gene3D G3DSA:3.90.1150.10 6 66 3.3E-37 T 06-07-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 Pfam PF00202 Aminotransferase class-III 31 446 5.2E-95 T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS32480 ca74179d160a50f849393a3e1d910ea7 461 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 255 292 - T 06-07-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDO28_RS23580 75e41e8a300bb274c1994914c9a32a39 247 SUPERFAMILY SSF51621 2 247 3.93E-64 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS23580 75e41e8a300bb274c1994914c9a32a39 247 Gene3D G3DSA:3.20.20.60 2 246 2.2E-63 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS23580 75e41e8a300bb274c1994914c9a32a39 247 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 20 237 1.4E-33 T 06-07-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CDO28_RS05175 452e1aa0a8f9227b9ca3db9ac8ac3e37 94 SUPERFAMILY SSF88723 3 83 2.8E-9 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS21805 54ce89297612ca51ae19549ac74501ea 298 Gene3D G3DSA:3.60.15.10 51 265 3.5E-36 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS21805 54ce89297612ca51ae19549ac74501ea 298 SUPERFAMILY SSF56281 24 267 1.31E-43 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS21805 54ce89297612ca51ae19549ac74501ea 298 Pfam PF00753 Metallo-beta-lactamase superfamily 36 251 2.6E-33 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS21805 54ce89297612ca51ae19549ac74501ea 298 SMART SM00849 39 251 1.2E-30 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS05385 1bba2f337f88fa12a12f50b4dc454b9b 312 SUPERFAMILY SSF103481 44 146 3.27E-12 T 06-07-2017 CDO28_RS05385 1bba2f337f88fa12a12f50b4dc454b9b 312 Pfam PF00892 EamA-like transporter family 9 143 5.0E-15 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS05385 1bba2f337f88fa12a12f50b4dc454b9b 312 Pfam PF00892 EamA-like transporter family 161 291 3.3E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS05385 1bba2f337f88fa12a12f50b4dc454b9b 312 SUPERFAMILY SSF103481 195 295 1.57E-14 T 06-07-2017 CDO28_RS19225 d81531990fe6830cbb2e821926f183ed 98 SUPERFAMILY SSF54909 3 95 3.3E-21 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS19225 d81531990fe6830cbb2e821926f183ed 98 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 79 3.9E-16 T 06-07-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain CDO28_RS19225 d81531990fe6830cbb2e821926f183ed 98 Gene3D G3DSA:3.30.70.900 3 97 4.7E-23 T 06-07-2017 CDO28_RS07650 65f0476af359dd1e7a846df11ff0891f 481 Gene3D G3DSA:1.20.1600.10 73 462 5.3E-31 T 06-07-2017 CDO28_RS07650 65f0476af359dd1e7a846df11ff0891f 481 Pfam PF02321 Outer membrane efflux protein 77 254 2.2E-8 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 CDO28_RS07650 65f0476af359dd1e7a846df11ff0891f 481 Pfam PF02321 Outer membrane efflux protein 279 459 8.3E-12 T 06-07-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 CDO28_RS07650 65f0476af359dd1e7a846df11ff0891f 481 SUPERFAMILY SSF56954 1 30 1.22E-53 T 06-07-2017 CDO28_RS07650 65f0476af359dd1e7a846df11ff0891f 481 SUPERFAMILY SSF56954 67 464 1.22E-53 T 06-07-2017 CDO28_RS01720 2729e6456a5687b1de19ea202839e235 155 PIRSF PIRSF034110 1 155 1.3E-66 T 06-07-2017 IPR009593 Protein of unknown function DUF1203 CDO28_RS01720 2729e6456a5687b1de19ea202839e235 155 Pfam PF06718 Protein of unknown function (DUF1203) 37 153 2.9E-34 T 06-07-2017 IPR009593 Protein of unknown function DUF1203 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 Hamap MF_00206 Lipoyl synthase [lipA]. 1 315 150.715 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 9 66 1.5E-7 T 06-07-2017 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 SMART SM00729 77 281 1.3E-8 T 06-07-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 Pfam PF04055 Radical SAM superfamily 83 243 4.4E-13 T 06-07-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 SUPERFAMILY SSF102114 42 307 9.55E-64 T 06-07-2017 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 309 1.1E-110 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 PIRSF PIRSF005963 3 322 3.7E-132 T 06-07-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDO28_RS03125 26dc9a1a7f29b22df8fa39bd73b37ede 322 Gene3D G3DSA:3.20.20.70 45 313 5.4E-70 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS18370 3088f13ce9b100aa76d24caa205e0c38 183 Gene3D G3DSA:2.10.109.10 128 166 3.3E-12 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS18370 3088f13ce9b100aa76d24caa205e0c38 183 Gene3D G3DSA:2.10.109.10 34 90 3.3E-12 T 06-07-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain CDO28_RS18370 3088f13ce9b100aa76d24caa205e0c38 183 SUPERFAMILY SSF51306 31 165 8.89E-26 T 06-07-2017 IPR015927 Peptidase S24/S26A/S26B/S26C CDO28_RS18370 3088f13ce9b100aa76d24caa205e0c38 183 Pfam PF10502 Signal peptidase, peptidase S26 29 166 3.8E-49 T 06-07-2017 IPR019533 Peptidase S26 CDO28_RS26290 34cfb9973fa903fa9fe810707fa3429c 184 SMART SM00953 36 168 6.9E-9 T 06-07-2017 IPR014914 RES domain CDO28_RS26290 34cfb9973fa903fa9fe810707fa3429c 184 Pfam PF08808 RES domain 23 177 7.0E-26 T 06-07-2017 IPR014914 RES domain CDO28_RS08130 7e13ee72c35c02fbc9e7e94581006d09 341 Pfam PF13407 Periplasmic binding protein domain 32 301 7.4E-42 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS08130 7e13ee72c35c02fbc9e7e94581006d09 341 Gene3D G3DSA:3.40.50.2300 150 324 9.1E-41 T 06-07-2017 CDO28_RS08130 7e13ee72c35c02fbc9e7e94581006d09 341 Gene3D G3DSA:3.40.50.2300 31 149 4.1E-34 T 06-07-2017 CDO28_RS08130 7e13ee72c35c02fbc9e7e94581006d09 341 SUPERFAMILY SSF53822 6 324 7.07E-63 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS29390 50b26cadd7f62f4eac9d4dd85105e7bd 347 Pfam PF00535 Glycosyl transferase family 2 4 118 2.1E-15 T 06-07-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDO28_RS29390 50b26cadd7f62f4eac9d4dd85105e7bd 347 Gene3D G3DSA:3.90.550.10 3 212 6.3E-28 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS29390 50b26cadd7f62f4eac9d4dd85105e7bd 347 SUPERFAMILY SSF53448 2 240 8.23E-39 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS01895 ec1cf86d39abf2262da9188a3830e407 445 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 45 399 8.1E-70 T 06-07-2017 IPR006427 Phage portal protein, HK97 CDO28_RS01895 ec1cf86d39abf2262da9188a3830e407 445 Pfam PF04860 Phage portal protein 50 395 1.4E-84 T 06-07-2017 IPR006944 Bacteriophage/Gene transfer agent portal protein CDO28_RS17695 4590f24b2b472ea2320b76e68e76124d 147 SUPERFAMILY SSF55961 3 132 3.44E-34 T 06-07-2017 CDO28_RS17695 4590f24b2b472ea2320b76e68e76124d 147 Gene3D G3DSA:3.30.530.20 3 132 2.1E-57 T 06-07-2017 IPR023393 START-like domain CDO28_RS09150 969493e4178be25a6303e140d4d79805 280 Pfam PF12697 Alpha/beta hydrolase family 70 258 2.6E-9 T 06-07-2017 IPR000073 Alpha/beta hydrolase fold-1 CDO28_RS09150 969493e4178be25a6303e140d4d79805 280 SUPERFAMILY SSF53474 39 277 9.92E-37 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS09150 969493e4178be25a6303e140d4d79805 280 Gene3D G3DSA:3.40.50.1820 43 162 1.7E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS09150 969493e4178be25a6303e140d4d79805 280 Gene3D G3DSA:3.40.50.1820 210 279 1.7E-33 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS04255 d1633b9670a8203fc45231abc46e9b21 143 Gene3D G3DSA:3.10.129.10 10 142 5.5E-41 T 06-07-2017 IPR029069 HotDog domain CDO28_RS04255 d1633b9670a8203fc45231abc46e9b21 143 SUPERFAMILY SSF54637 3 141 3.2E-28 T 06-07-2017 IPR029069 HotDog domain CDO28_RS04255 d1633b9670a8203fc45231abc46e9b21 143 Pfam PF03061 Thioesterase superfamily 54 122 1.8E-12 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 CDO28_RS04255 d1633b9670a8203fc45231abc46e9b21 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 32 139 8.3E-10 T 06-07-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 CDO28_RS06940 9d48ebb9dc9ccbc41b5316ad1b8a58d2 114 Pfam PF01042 Endoribonuclease L-PSP 11 113 1.4E-24 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS06940 9d48ebb9dc9ccbc41b5316ad1b8a58d2 114 Gene3D G3DSA:3.30.1330.40 7 113 4.9E-28 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS06940 9d48ebb9dc9ccbc41b5316ad1b8a58d2 114 SUPERFAMILY SSF55298 3 113 4.4E-34 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 Gene3D G3DSA:1.10.260.40 4 60 1.8E-20 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 Gene3D G3DSA:3.40.50.2300 182 310 5.5E-30 T 06-07-2017 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 SUPERFAMILY SSF47413 3 59 1.99E-15 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 Gene3D G3DSA:3.40.50.2300 61 181 6.8E-31 T 06-07-2017 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 Pfam PF13377 Periplasmic binding protein-like domain 174 337 4.5E-24 T 06-07-2017 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 SUPERFAMILY SSF53822 74 335 1.3E-39 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 SMART SM00354 1 71 3.6E-11 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS27935 40b24254f80e100120fba1c9a16c2c6e 349 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 48 8.3E-10 T 06-07-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 179 380 6.8E-61 T 06-07-2017 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 SMART SM00382 431 694 5.1E-4 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 12 788 1.5E-246 T 06-07-2017 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 SUPERFAMILY SSF52540 386 700 1.22E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 Gene3D G3DSA:3.40.50.300 400 492 2.8E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS24140 0d5a7dedca35832fca9a1f6dde557a90 792 Gene3D G3DSA:3.40.50.300 589 698 2.8E-17 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00240 80088bd74f10380c4d6e891f39088909 178 SUPERFAMILY SSF53254 10 152 1.95E-22 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS00240 80088bd74f10380c4d6e891f39088909 178 Gene3D G3DSA:3.40.50.1240 10 170 1.2E-44 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS00240 80088bd74f10380c4d6e891f39088909 178 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 11 83 9.0E-10 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS00240 80088bd74f10380c4d6e891f39088909 178 SMART SM00855 10 122 6.2E-6 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS27265 102b2b7e580952a8a2624e5b2673fa05 69 SUPERFAMILY SSF69047 1 69 9.68E-27 T 06-07-2017 IPR008462 CsbD-like CDO28_RS27265 102b2b7e580952a8a2624e5b2673fa05 69 Pfam PF05532 CsbD-like 4 55 1.6E-23 T 06-07-2017 IPR008462 CsbD-like CDO28_RS27265 102b2b7e580952a8a2624e5b2673fa05 69 Gene3D G3DSA:1.10.1470.10 1 65 4.0E-31 T 06-07-2017 IPR008462 CsbD-like CDO28_RS27265 102b2b7e580952a8a2624e5b2673fa05 69 PIRSF PIRSF039008 1 66 1.1E-30 T 06-07-2017 IPR026042 Stress response protein YjbJ CDO28_RS16280 b5cc565be3dfda5d3391bd30c6c1dea2 314 SUPERFAMILY SSF103481 213 301 1.11E-12 T 06-07-2017 CDO28_RS16280 b5cc565be3dfda5d3391bd30c6c1dea2 314 SUPERFAMILY SSF103481 50 152 8.63E-13 T 06-07-2017 CDO28_RS16280 b5cc565be3dfda5d3391bd30c6c1dea2 314 Pfam PF00892 EamA-like transporter family 167 300 1.8E-18 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS16280 b5cc565be3dfda5d3391bd30c6c1dea2 314 Pfam PF00892 EamA-like transporter family 19 149 5.8E-17 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS15580 20d2ab4c372b1cb86bf844e427b568f6 396 Gene3D G3DSA:2.120.10.30 33 393 7.0E-100 T 06-07-2017 IPR011042 Six-bladed beta-propeller, TolB-like CDO28_RS15580 20d2ab4c372b1cb86bf844e427b568f6 396 SUPERFAMILY SSF50952 41 393 9.42E-49 T 06-07-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CDO28_RS15580 20d2ab4c372b1cb86bf844e427b568f6 396 Pfam PF07995 Glucose / Sorbosone dehydrogenase 61 389 1.9E-123 T 06-07-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 CDO28_RS02380 8a73ca4e992fcc09b264377651af9a42 328 SUPERFAMILY SSF53955 70 198 7.88E-30 T 06-07-2017 IPR023346 Lysozyme-like domain CDO28_RS02380 8a73ca4e992fcc09b264377651af9a42 328 Gene3D G3DSA:1.10.530.10 78 199 5.8E-31 T 06-07-2017 CDO28_RS02380 8a73ca4e992fcc09b264377651af9a42 328 Pfam PF01464 Transglycosylase SLT domain 84 179 2.1E-17 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS13150 74323c5fc1b43d4675b9c197b7d655d2 90 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 8 79 3.2E-35 T 06-07-2017 IPR018753 Azospirillum phage Cd, Gp10 CDO28_RS13150 74323c5fc1b43d4675b9c197b7d655d2 90 Hamap MF_00797 UPF0335 protein . 3 80 22.903 T 06-07-2017 IPR018753 Azospirillum phage Cd, Gp10 CDO28_RS01585 4e0612b97845024c9ad111c4cc86989e 821 SUPERFAMILY SSF49265 515 588 8.19E-5 T 06-07-2017 IPR003961 Fibronectin type III GO:0005515 CDO28_RS01585 4e0612b97845024c9ad111c4cc86989e 821 Gene3D G3DSA:2.60.40.10 525 594 5.6E-4 T 06-07-2017 IPR013783 Immunoglobulin-like fold CDO28_RS06225 1068b557e6ce009eeb194b8792ada90f 341 Pfam PF01183 Glycosyl hydrolases family 25 93 230 1.8E-17 T 06-07-2017 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CDO28_RS06225 1068b557e6ce009eeb194b8792ada90f 341 SUPERFAMILY SSF51445 31 263 6.21E-31 T 06-07-2017 IPR017853 Glycoside hydrolase superfamily CDO28_RS06225 1068b557e6ce009eeb194b8792ada90f 341 Gene3D G3DSA:3.20.20.80 40 263 4.8E-29 T 06-07-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 CDO28_RS24530 66bdeb747878fb3a9e81c4b898252b56 290 Pfam PF13668 Ferritin-like domain 44 206 1.5E-40 T 06-07-2017 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 Gene3D G3DSA:3.30.43.10 15 86 3.3E-15 T 06-07-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 Pfam PF04030 D-arabinono-1,4-lactone oxidase 271 404 8.1E-35 T 06-07-2017 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 Pfam PF04030 D-arabinono-1,4-lactone oxidase 188 240 2.5E-4 T 06-07-2017 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 Gene3D G3DSA:3.30.465.10 87 193 3.8E-22 T 06-07-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 SUPERFAMILY SSF56176 15 193 7.52E-41 T 06-07-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CDO28_RS31085 8609df93d2ba06c4306ba102d2608249 409 Pfam PF01565 FAD binding domain 33 162 9.6E-26 T 06-07-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDO28_RS08180 0ad444d366603f9014e9787dafc6090b 104 Pfam PF03692 Putative zinc- or iron-chelating domain 12 85 2.2E-7 T 06-07-2017 IPR005358 Putative zinc- or iron-chelating domain containing protein CDO28_RS18295 9028aafc8d917f33cef3a64af8fe9a30 89 ProDom PD069311 TRANSCRIPTIONAL ACTIVATOR PRTN TRANSCRIPTION PYOCIN BIOSYNTHESIS DNA-BINDING BACTERIOCIN REGULATOR REGULATOR 3 72 1.0E-4 T 06-07-2017 IPR020518 Transcription regulator PrtN GO:0006355 CDO28_RS18295 9028aafc8d917f33cef3a64af8fe9a30 89 Pfam PF11112 Pyocin activator protein PrtN 3 76 4.5E-28 T 06-07-2017 IPR020518 Transcription regulator PrtN GO:0006355 CDO28_RS26945 e5c41c9a05f953186436d30498e84f92 505 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 329 489 9.9E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26945 e5c41c9a05f953186436d30498e84f92 505 Gene3D G3DSA:1.10.3720.10 304 500 2.0E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26945 e5c41c9a05f953186436d30498e84f92 505 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 296 500 1.2E-73 T 06-07-2017 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 CDO28_RS26945 e5c41c9a05f953186436d30498e84f92 505 SUPERFAMILY SSF161098 305 490 1.31E-31 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24565 a4b474b06570e4a2e9ea1315960b4d1a 129 Pfam PF09722 Protein of unknown function (DUF2384) 78 124 6.0E-11 T 06-07-2017 IPR024467 Domain of unknown function DUF2384 CDO28_RS00725 a8d79efa85d4893963a70258ddba082b 101 Gene3D G3DSA:3.30.160.190 1 78 4.0E-35 T 06-07-2017 CDO28_RS00725 a8d79efa85d4893963a70258ddba082b 101 Pfam PF04800 ETC complex I subunit conserved region 3 96 4.2E-36 T 06-07-2017 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 CDO28_RS10965 314f87f7f3d99be137fd8107533c42cf 226 SUPERFAMILY SSF161098 15 201 1.96E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10965 314f87f7f3d99be137fd8107533c42cf 226 Gene3D G3DSA:1.10.3720.10 16 216 1.3E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10965 314f87f7f3d99be137fd8107533c42cf 226 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 110 6.3E-29 T 06-07-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CDO28_RS10965 314f87f7f3d99be137fd8107533c42cf 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 7.0E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS10330 a39a5d640a136f9d306657b19b45222f 668 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 7 169 4.7E-37 T 06-07-2017 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 CDO28_RS10330 a39a5d640a136f9d306657b19b45222f 668 SUPERFAMILY SSF53067 4 117 1.4E-13 T 06-07-2017 CDO28_RS10330 a39a5d640a136f9d306657b19b45222f 668 Gene3D G3DSA:3.30.420.190 256 310 3.9E-5 T 06-07-2017 CDO28_RS10330 a39a5d640a136f9d306657b19b45222f 668 Pfam PF01968 Hydantoinase/oxoprolinase 189 574 5.0E-31 T 06-07-2017 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 CDO28_RS26840 08d5e65279e4bc933059b0e6e9d23f08 166 SUPERFAMILY SSF55729 4 163 1.45E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS26840 08d5e65279e4bc933059b0e6e9d23f08 166 Gene3D G3DSA:3.40.630.30 4 164 3.9E-32 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS26840 08d5e65279e4bc933059b0e6e9d23f08 166 Pfam PF13673 Acetyltransferase (GNAT) domain 41 143 1.5E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS17480 89c1c79e2e25714dad172a34568acbaa 524 PIRSF PIRSF037567 1 524 2.1E-174 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS17480 89c1c79e2e25714dad172a34568acbaa 524 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 22 520 2.5E-230 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 SUPERFAMILY SSF51735 8 255 9.7E-68 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.1E-9 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 Gene3D G3DSA:3.40.50.720 5 255 6.2E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 252 9.5E-52 T 06-07-2017 CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 192 5.2E-5 T 06-07-2017 CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS12000 4f1656a3583fe640ec5f4f5cc8921daa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 06-07-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 SUPERFAMILY SSF53720 13 490 1.15E-163 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 291 302 - T 06-07-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 Gene3D G3DSA:3.40.605.10 17 277 2.9E-93 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 Pfam PF00171 Aldehyde dehydrogenase family 26 487 5.1E-169 T 06-07-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS10845 161a91e929b971e7a2f71220bfb14e93 502 Gene3D G3DSA:3.40.309.10 278 463 5.6E-68 T 06-07-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 CDO28_RS30265 d8bcc789c68682004ca50a6f67947383 139 Pfam PF07681 DoxX 12 92 1.0E-17 T 06-07-2017 IPR032808 DoxX family CDO28_RS05550 5d45cce32e962d825228a5c6d5a64380 123 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 36 87 2.7E-17 T 06-07-2017 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CDO28_RS31785 68122da2846d621b41318a07769aeba0 376 SUPERFAMILY SSF53756 4 356 3.45E-20 T 06-07-2017 CDO28_RS31785 68122da2846d621b41318a07769aeba0 376 Pfam PF13524 Glycosyl transferases group 1 272 355 2.0E-21 T 06-07-2017 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 4 198 2.1E-71 T 06-07-2017 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 SUPERFAMILY SSF56784 1 216 1.12E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 92 192 6.5E-9 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 Gene3D G3DSA:3.40.50.1000 86 216 1.5E-28 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 29 42 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 43 56 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 5.9E-29 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 Gene3D G3DSA:1.10.150.240 17 85 5.8E-28 T 06-07-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 CDO28_RS05695 f5a6e838dee5f4a9db4fc8aaefe5a318 220 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 5 185 4.2E-54 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS24065 34f82cc35ae9201466da6d0afc374fca 167 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 34 155 3.2E-47 T 06-07-2017 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CDO28_RS24065 34f82cc35ae9201466da6d0afc374fca 167 Gene3D G3DSA:4.10.1020.10 74 141 2.8E-31 T 06-07-2017 IPR027406 Periplasmic nitrate reductase NapB subunit, heme binding domain CDO28_RS24065 34f82cc35ae9201466da6d0afc374fca 167 PIRSF PIRSF006105 16 167 8.9E-52 T 06-07-2017 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CDO28_RS24065 34f82cc35ae9201466da6d0afc374fca 167 SUPERFAMILY SSF48695 44 159 8.24E-46 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS05985 bbd495cdac7b0536154be3c7040b74c3 312 Pfam PF11412 Disulphide bond corrector protein DsbC 85 188 1.7E-17 T 06-07-2017 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CDO28_RS31610 093c14df1b5297928de953292c13dd1d 98 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 8 96 21.371 T 06-07-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 CDO28_RS31610 093c14df1b5297928de953292c13dd1d 98 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 31 91 1.2E-13 T 06-07-2017 IPR008792 Coenzyme PQQ synthesis D CDO28_RS31610 093c14df1b5297928de953292c13dd1d 98 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 15 95 7.9E-23 T 06-07-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 CDO28_RS32065 2ae3fd31154460c446921373e9fc3104 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 413 1.6E-117 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS32065 2ae3fd31154460c446921373e9fc3104 426 PIRSF PIRSF006066 1 424 3.3E-142 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS32065 2ae3fd31154460c446921373e9fc3104 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 15 418 4.3E-137 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS09490 9d3f2865270b453802a8e8a4d22b3ec8 314 Pfam PF03547 Membrane transport protein 162 309 2.3E-15 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CDO28_RS09490 9d3f2865270b453802a8e8a4d22b3ec8 314 Pfam PF03547 Membrane transport protein 4 150 2.4E-19 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CDO28_RS09455 53f8658bd0fbf41126da7ba8655d5499 230 Gene3D G3DSA:1.10.10.10 1 63 9.2E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS09455 53f8658bd0fbf41126da7ba8655d5499 230 Pfam PF13280 WYL domain 137 221 3.3E-13 T 06-07-2017 IPR026881 WYL domain CDO28_RS09455 53f8658bd0fbf41126da7ba8655d5499 230 Pfam PF08279 HTH domain 6 59 4.5E-17 T 06-07-2017 IPR013196 Helix-turn-helix, type 11 CDO28_RS09455 53f8658bd0fbf41126da7ba8655d5499 230 SUPERFAMILY SSF46785 1 62 3.81E-10 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS22240 686fea7443c906e6a605b87fa1ac6d79 361 Pfam PF00487 Fatty acid desaturase 73 316 7.8E-36 T 06-07-2017 IPR005804 Fatty acid desaturase domain GO:0006629 CDO28_RS13880 f2fb4a5baeef37df25ed15e6980ba328 885 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 21 885 0.0 T 06-07-2017 IPR012683 Conserved hypothetical protein CHP02302, transmembrane CDO28_RS13880 f2fb4a5baeef37df25ed15e6980ba328 885 Pfam PF13779 Domain of unknown function (DUF4175) 33 883 5.6E-288 T 06-07-2017 IPR012683 Conserved hypothetical protein CHP02302, transmembrane CDO28_RS12065 de5279091a55c35f4f34a26c02228af0 261 Gene3D G3DSA:3.90.1200.10 96 261 3.0E-48 T 06-07-2017 CDO28_RS12065 de5279091a55c35f4f34a26c02228af0 261 Pfam PF01636 Phosphotransferase enzyme family 26 254 1.7E-36 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS12065 de5279091a55c35f4f34a26c02228af0 261 SUPERFAMILY SSF56112 9 261 1.44E-59 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS12065 de5279091a55c35f4f34a26c02228af0 261 PIRSF PIRSF000706 1 261 2.7E-97 T 06-07-2017 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 CDO28_RS12065 de5279091a55c35f4f34a26c02228af0 261 Gene3D G3DSA:3.30.200.20 3 92 9.8E-27 T 06-07-2017 CDO28_RS11710 33f9e7f53c465c25d1eda20fc2c30488 126 SUPERFAMILY SSF81343 11 122 2.83E-28 T 06-07-2017 CDO28_RS11710 33f9e7f53c465c25d1eda20fc2c30488 126 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1 109 2.3E-14 T 06-07-2017 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS11710 33f9e7f53c465c25d1eda20fc2c30488 126 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 16 119 3.0E-30 T 06-07-2017 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 CDO28_RS11710 33f9e7f53c465c25d1eda20fc2c30488 126 Gene3D G3DSA:1.20.1300.10 9 121 1.5E-28 T 06-07-2017 CDO28_RS00980 ac80e749a68ced7b3763f23ab0a0d95c 320 Pfam PF03547 Membrane transport protein 7 114 1.6E-7 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CDO28_RS00980 ac80e749a68ced7b3763f23ab0a0d95c 320 Pfam PF03547 Membrane transport protein 156 303 1.9E-15 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CDO28_RS10320 2d0a0ff28a90d758fc865dff12643d73 224 SUPERFAMILY SSF141523 77 130 8.5E-29 T 06-07-2017 CDO28_RS10320 2d0a0ff28a90d758fc865dff12643d73 224 SUPERFAMILY SSF141523 158 220 8.5E-29 T 06-07-2017 CDO28_RS10320 2d0a0ff28a90d758fc865dff12643d73 224 Pfam PF03734 L,D-transpeptidase catalytic domain 84 221 1.6E-15 T 06-07-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDO28_RS10320 2d0a0ff28a90d758fc865dff12643d73 224 Gene3D G3DSA:2.40.440.10 77 219 5.9E-30 T 06-07-2017 CDO28_RS14350 61738dff8959f9a5995b64a90ae97883 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 319 2.3E-45 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS22895 6b8bae15e49d5daf26b261b66a8a4c8f 108 Pfam PF07978 NIPSNAP 3 102 8.6E-33 T 06-07-2017 IPR012577 NIPSNAP CDO28_RS22895 6b8bae15e49d5daf26b261b66a8a4c8f 108 SUPERFAMILY SSF54909 1 102 8.31E-33 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS22895 6b8bae15e49d5daf26b261b66a8a4c8f 108 Gene3D G3DSA:3.30.70.900 1 103 5.4E-31 T 06-07-2017 CDO28_RS28905 aa8183f2067f1dbc20ca35a1736a32c7 141 Pfam PF04343 Protein of unknown function, DUF488 26 136 9.5E-32 T 06-07-2017 IPR007438 Protein of unknown function DUF488 CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 Gene3D G3DSA:3.40.50.720 377 433 2.3E-9 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 Gene3D G3DSA:3.40.50.720 161 313 2.3E-9 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 SUPERFAMILY SSF69572 372 434 3.66E-14 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 SUPERFAMILY SSF69572 161 305 3.66E-14 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 Pfam PF00899 ThiF family 153 397 2.4E-10 T 06-07-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDO28_RS18525 ef74269c3c70a20ffb96c10d404d3c6b 446 Pfam PF14463 E1 N-terminal domain 1 147 1.5E-41 T 06-07-2017 IPR025221 E1 N-terminal domain CDO28_RS31595 676bd03e05438d0794f56e81838ab047 31 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 3 23 5.2E-12 T 06-07-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 CDO28_RS31595 676bd03e05438d0794f56e81838ab047 31 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 2 24 10.814 T 06-07-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 CDO28_RS31595 676bd03e05438d0794f56e81838ab047 31 Pfam PF08042 PqqA family 2 20 2.1E-9 T 06-07-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 CDO28_RS12805 24d734dc5f939fbe7daeaaf94f1a8295 136 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 50 133 1.7E-35 T 06-07-2017 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CDO28_RS18470 3a57737143ad3b28c502e7948159e30e 451 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 37 253 4.6E-57 T 06-07-2017 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 CDO28_RS18470 3a57737143ad3b28c502e7948159e30e 451 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 1 305 1.5E-75 T 06-07-2017 IPR014150 Conjugal transfer, TrbL CDO28_RS27930 0c572ab0ca21efb7b02a7544db10e699 343 Gene3D G3DSA:3.30.360.10 146 343 2.3E-29 T 06-07-2017 CDO28_RS27930 0c572ab0ca21efb7b02a7544db10e699 343 SUPERFAMILY SSF55347 136 264 8.37E-21 T 06-07-2017 CDO28_RS27930 0c572ab0ca21efb7b02a7544db10e699 343 Gene3D G3DSA:3.40.50.720 4 145 8.0E-36 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS27930 0c572ab0ca21efb7b02a7544db10e699 343 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 124 5.7E-21 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS27930 0c572ab0ca21efb7b02a7544db10e699 343 SUPERFAMILY SSF51735 4 160 2.37E-37 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS26725 fc06b05399ce16aaf379aa78b7ae9ea9 412 SUPERFAMILY SSF46626 282 405 4.31E-6 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS26725 fc06b05399ce16aaf379aa78b7ae9ea9 412 Pfam PF06181 Protein of unknown function (DUF989) 6 298 2.5E-136 T 06-07-2017 IPR010389 Domain of unknown function DUF989 CDO28_RS34030 74ce42fd33f55eb49baed1747fe25385 165 SUPERFAMILY SSF50199 25 149 1.83E-27 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34030 74ce42fd33f55eb49baed1747fe25385 165 Pfam PF00565 Staphylococcal nuclease homologue 38 147 7.7E-15 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34030 74ce42fd33f55eb49baed1747fe25385 165 Gene3D G3DSA:2.40.50.90 25 148 1.5E-21 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS34030 74ce42fd33f55eb49baed1747fe25385 165 SMART SM00318 18 148 3.1E-14 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 SUPERFAMILY SSF53850 89 295 1.28E-45 T 06-07-2017 CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 SUPERFAMILY SSF46785 4 87 1.33E-18 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 Gene3D G3DSA:3.40.190.10 92 192 3.4E-21 T 06-07-2017 CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 Pfam PF03466 LysR substrate binding domain 89 293 3.4E-44 T 06-07-2017 IPR005119 LysR, substrate-binding CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 Gene3D G3DSA:1.10.10.10 2 81 6.0E-22 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12730 5e2ecd4dba0000975d9c782c0178f5bd 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.6E-15 T 06-07-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDO28_RS16860 5724d8c74506f024dd73e86bb7fcdbf0 250 SUPERFAMILY SSF63892 3 247 1.05E-76 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDO28_RS16860 5724d8c74506f024dd73e86bb7fcdbf0 250 Gene3D G3DSA:3.20.20.70 2 248 3.1E-81 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS16860 5724d8c74506f024dd73e86bb7fcdbf0 250 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 245 1.0E-76 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDO28_RS16860 5724d8c74506f024dd73e86bb7fcdbf0 250 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 250 84.855 T 06-07-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDO28_RS11695 c550347e7941da565f7c6cb4c372d97c 218 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 75 127 7.5E-11 T 06-07-2017 CDO28_RS11695 c550347e7941da565f7c6cb4c372d97c 218 SUPERFAMILY SSF53335 31 176 5.13E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS11695 c550347e7941da565f7c6cb4c372d97c 218 Gene3D G3DSA:3.40.50.150 39 187 9.9E-30 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS04995 0f8ec5c4a69f3032d253f5552c53e233 202 SUPERFAMILY SSF109604 5 192 1.7E-59 T 06-07-2017 CDO28_RS04995 0f8ec5c4a69f3032d253f5552c53e233 202 Pfam PF13023 HD domain 40 108 4.3E-6 T 06-07-2017 IPR006674 HD domain CDO28_RS04995 0f8ec5c4a69f3032d253f5552c53e233 202 Gene3D G3DSA:1.10.3210.10 2 198 2.8E-69 T 06-07-2017 IPR006674 HD domain CDO28_RS20175 b1637e370d79ec6dec4750feddccd09d 40 Pfam PF13817 IS66 C-terminal element 1 35 3.5E-14 T 06-07-2017 CDO28_RS22650 0e9886a45d232a6b22bb8381d4bc9f07 475 Pfam PF03577 Peptidase family C69 87 247 7.2E-20 T 06-07-2017 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 CDO28_RS30730 3ce9d3574395004b4b1091f3cceaeda8 378 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 155 359 1.1E-44 T 06-07-2017 IPR005079 Peptidase C45 CDO28_RS30730 3ce9d3574395004b4b1091f3cceaeda8 378 SUPERFAMILY SSF56235 188 268 7.72E-5 T 06-07-2017 IPR029055 Nucleophile aminohydrolases, N-terminal CDO28_RS30730 3ce9d3574395004b4b1091f3cceaeda8 378 Gene3D G3DSA:3.60.60.10 199 268 1.5E-8 T 06-07-2017 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 Reactome: R-HSA-1660662 CDO28_RS03440 680d2294434fa40fcb32ec28fadd2230 146 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 14 142 1.5E-44 T 06-07-2017 IPR003791 Protein of unknown function UPF0178 CDO28_RS03440 680d2294434fa40fcb32ec28fadd2230 146 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 144 27.968 T 06-07-2017 IPR003791 Protein of unknown function UPF0178 CDO28_RS20340 b03b9627392343fe688da4a63b763ed1 370 Gene3D G3DSA:3.20.20.70 9 348 6.6E-92 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS20340 b03b9627392343fe688da4a63b763ed1 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 16 341 2.3E-57 T 06-07-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDO28_RS20340 b03b9627392343fe688da4a63b763ed1 370 SUPERFAMILY SSF51395 9 352 3.44E-88 T 06-07-2017 CDO28_RS03990 04c7ab3f7cc78d7a443355a08e9dee55 89 Pfam PF12096 Protein of unknown function (DUF3572) 2 83 1.6E-32 T 06-07-2017 IPR021955 Protein of unknown function DUF3572 CDO28_RS05195 583850a67374e8373b2d06b9a853849f 192 Pfam PF01936 NYN domain 7 164 1.9E-39 T 06-07-2017 IPR021139 NYN domain, limkain-b1-type CDO28_RS05195 583850a67374e8373b2d06b9a853849f 192 Gene3D G3DSA:3.40.50.1010 2 167 1.2E-48 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS27160 8801fd9c5abef0cbd646f10ab6291dbe 738 SUPERFAMILY SSF53448 528 692 3.0E-5 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS06095 01ca86fa36bb03c03a8cf29b62d3aab5 162 Pfam PF16998 17 kDa outer membrane surface antigen 49 160 5.3E-47 T 06-07-2017 IPR032635 Surface antigen domain CDO28_RS10510 3002f0ee57fa913b4c266faf32c57a41 251 Pfam PF01863 Protein of unknown function DUF45 40 241 9.6E-58 T 06-07-2017 IPR002725 Protein of unknown function DUF45 CDO28_RS06425 49bd4ea6c9b5bd5912005ffc69832adb 385 Pfam PF07486 Cell Wall Hydrolase 268 377 6.3E-26 T 06-07-2017 IPR011105 Cell wall hydrolase, SleB GO:0016787 CDO28_RS23440 aecf0e3ddb0e8b571b4b7abcb9d14af9 173 SUPERFAMILY SSF55729 12 171 2.03E-30 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS23440 aecf0e3ddb0e8b571b4b7abcb9d14af9 173 Pfam PF13673 Acetyltransferase (GNAT) domain 52 150 4.1E-15 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS23440 aecf0e3ddb0e8b571b4b7abcb9d14af9 173 Gene3D G3DSA:3.40.630.30 12 171 3.2E-31 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS31180 0807632e494b607384f1aeceda115349 734 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 37 231 1.3E-57 T 06-07-2017 IPR032856 Putative glycogen debranching enzyme, N-terminal CDO28_RS31180 0807632e494b607384f1aeceda115349 734 SUPERFAMILY SSF48208 253 716 2.84E-89 T 06-07-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 CDO28_RS31180 0807632e494b607384f1aeceda115349 734 Pfam PF06202 Amylo-alpha-1,6-glucosidase 293 660 6.6E-11 T 06-07-2017 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CDO28_RS03225 92946148831929d792a1102a7554a2ee 156 SUPERFAMILY SSF55729 21 153 1.38E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS03225 92946148831929d792a1102a7554a2ee 156 Gene3D G3DSA:3.40.630.30 14 150 1.8E-27 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS03225 92946148831929d792a1102a7554a2ee 156 Pfam PF13508 Acetyltransferase (GNAT) domain 50 132 1.1E-12 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS02480 e9250c4628aceb78fefbd450064baae0 498 SUPERFAMILY SSF56281 103 191 4.48E-6 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS02480 e9250c4628aceb78fefbd450064baae0 498 Gene3D G3DSA:3.60.15.10 125 188 1.0E-5 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS19880 bcc3d4d79a5bbefcfa861b58d8a1dd59 225 Gene3D G3DSA:3.20.20.70 3 224 1.1E-28 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS19880 bcc3d4d79a5bbefcfa861b58d8a1dd59 225 Pfam PF05853 beta-keto acid cleavage enzyme 3 149 7.0E-13 T 06-07-2017 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 CDO28_RS13930 3c65071b354da6d1f2b864f147fbf1d5 67 Pfam PF04588 Hypoxia induced protein conserved region 9 56 3.8E-12 T 06-07-2017 IPR007667 Hypoxia induced protein, domain CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 SUPERFAMILY SSF51735 4 150 3.15E-22 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 Gene3D G3DSA:3.40.50.720 1 133 7.8E-23 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 SUPERFAMILY SSF55347 129 300 4.36E-23 T 06-07-2017 CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 Gene3D G3DSA:3.30.360.10 134 333 9.5E-40 T 06-07-2017 CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 240 1.9E-5 T 06-07-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 CDO28_RS10030 a71ea826a18cc528bda4e2e47317ff7b 338 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 26 122 1.2E-7 T 06-07-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 CDO28_RS15160 f39b3a2666fb85cb0811075209d2755c 277 SMART SM00382 32 231 1.4E-10 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS15160 f39b3a2666fb85cb0811075209d2755c 277 Gene3D G3DSA:3.40.50.300 4 254 5.0E-63 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15160 f39b3a2666fb85cb0811075209d2755c 277 SUPERFAMILY SSF52540 4 249 1.42E-54 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS15160 f39b3a2666fb85cb0811075209d2755c 277 Pfam PF00005 ABC transporter 27 182 5.9E-20 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS32835 453ba6ec6d9099fd2c6ff7b1d55fa8fa 202 Pfam PF06191 Protein of unknown function (DUF995) 32 167 3.7E-53 T 06-07-2017 IPR009337 Protein of unknown function DUF995 CDO28_RS28110 8a66e2f9e2b4ba1559364c67db0e4425 316 Pfam PF04230 Polysaccharide pyruvyl transferase 141 191 1.8E-7 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 SUPERFAMILY SSF54373 219 321 1.7E-7 T 06-07-2017 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 SUPERFAMILY SSF51905 9 221 8.67E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 SUPERFAMILY SSF51905 325 382 8.67E-40 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Gene3D G3DSA:3.30.9.10 94 142 2.7E-4 T 06-07-2017 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Gene3D G3DSA:3.30.9.10 219 322 2.7E-4 T 06-07-2017 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Gene3D G3DSA:3.50.50.60 325 383 9.1E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Gene3D G3DSA:3.50.50.60 143 218 9.1E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Gene3D G3DSA:3.50.50.60 7 85 9.1E-46 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS24375 1c67e8622060323d8a782d2c54cb30ed 389 Pfam PF01266 FAD dependent oxidoreductase 10 364 9.1E-47 T 06-07-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDO28_RS26640 1a0f6daa14d0cb729a5e4dae153349db 259 SUPERFAMILY SSF161098 4 252 6.54E-45 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26640 1a0f6daa14d0cb729a5e4dae153349db 259 Gene3D G3DSA:1.10.3720.10 6 253 5.9E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26640 1a0f6daa14d0cb729a5e4dae153349db 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 252 6.0E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS33275 10b9624c27d1b29c444b3be471fd1c03 226 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 203 9.1E-14 T 06-07-2017 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 CDO28_RS24600 14a984d9dad6ed5c8f4a485eea7aa461 226 Gene3D G3DSA:3.40.50.850 3 206 4.8E-40 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS24600 14a984d9dad6ed5c8f4a485eea7aa461 226 SUPERFAMILY SSF52499 3 198 4.45E-43 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS24600 14a984d9dad6ed5c8f4a485eea7aa461 226 Pfam PF00857 Isochorismatase family 13 190 3.4E-34 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS16305 f80b9ec1500b114f11253f5432e5a315 453 Gene3D G3DSA:3.40.710.10 143 452 5.0E-38 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS16305 f80b9ec1500b114f11253f5432e5a315 453 Pfam PF00144 Beta-lactamase 160 430 1.0E-28 T 06-07-2017 IPR001466 Beta-lactamase-related CDO28_RS16305 f80b9ec1500b114f11253f5432e5a315 453 SUPERFAMILY SSF56601 118 452 4.63E-71 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS27290 bdf4f4c3a807daf19b85bd412245efd9 359 Pfam PF01594 Domain of unknown function DUF20 28 350 1.5E-48 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS15475 4cdc4cefdfe3c86565185cf17da25cbf 276 SUPERFAMILY SSF51621 6 272 9.94E-63 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS15475 4cdc4cefdfe3c86565185cf17da25cbf 276 Gene3D G3DSA:3.20.20.60 6 266 5.6E-59 T 06-07-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CDO28_RS15475 4cdc4cefdfe3c86565185cf17da25cbf 276 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 249 3.2E-66 T 06-07-2017 CDO28_RS31840 540621437bed91c414e5c60a4982255d 354 Pfam PF04230 Polysaccharide pyruvyl transferase 14 291 3.7E-29 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase CDO28_RS14560 9876b8743b66c8b3905a63db0b90f92d 132 SUPERFAMILY SSF54593 1 121 2.54E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14560 9876b8743b66c8b3905a63db0b90f92d 132 Pfam PF12681 Glyoxalase-like domain 3 121 2.1E-39 T 06-07-2017 IPR025870 Glyoxalase-like domain CDO28_RS14560 9876b8743b66c8b3905a63db0b90f92d 132 Gene3D G3DSA:3.10.180.10 9 121 2.0E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS29525 9154c8d48025f79cbf2c43c330e1fee9 345 Pfam PF00248 Aldo/keto reductase family 24 331 1.8E-50 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS29525 9154c8d48025f79cbf2c43c330e1fee9 345 SUPERFAMILY SSF51430 11 332 1.57E-73 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS29525 9154c8d48025f79cbf2c43c330e1fee9 345 Gene3D G3DSA:3.20.20.100 11 332 3.8E-73 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS08980 22ee907b175a70286dc162b52936e7ed 150 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 140 3.2E-13 T 06-07-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 CDO28_RS08980 22ee907b175a70286dc162b52936e7ed 150 Gene3D G3DSA:3.10.129.10 9 143 1.8E-33 T 06-07-2017 IPR029069 HotDog domain CDO28_RS08980 22ee907b175a70286dc162b52936e7ed 150 SUPERFAMILY SSF54637 6 144 3.89E-27 T 06-07-2017 IPR029069 HotDog domain CDO28_RS08980 22ee907b175a70286dc162b52936e7ed 150 Pfam PF03061 Thioesterase superfamily 52 122 1.9E-9 T 06-07-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 CDO28_RS31275 6ee1519c598a6861ec04bf7c2430d5cc 463 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 15 439 5.3E-112 T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS31275 6ee1519c598a6861ec04bf7c2430d5cc 463 Pfam PF00860 Permease family 18 406 1.1E-102 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS31275 6ee1519c598a6861ec04bf7c2430d5cc 463 TIGRFAM TIGR03173 pbuX: xanthine permease 22 441 2.9E-160 T 06-07-2017 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 CDO28_RS04390 eb5c634150ec676ca56afccda8c8bf82 178 Pfam PF03981 Ubiquinol-cytochrome C chaperone 35 171 5.6E-41 T 06-07-2017 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 CDO28_RS04390 eb5c634150ec676ca56afccda8c8bf82 178 PIRSF PIRSF032079 1 178 3.2E-81 T 06-07-2017 IPR014569 Ubiquinol-cytochrome c chaperone, CBP3-related CDO28_RS02140 902d2993ab837c52050191fe473b985b 343 Gene3D G3DSA:3.40.50.300 20 184 7.7E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02140 902d2993ab837c52050191fe473b985b 343 SUPERFAMILY SSF52540 20 236 1.91E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS02140 902d2993ab837c52050191fe473b985b 343 Pfam PF13177 DNA polymerase III, delta subunit 24 196 8.7E-38 T 06-07-2017 CDO28_RS02140 902d2993ab837c52050191fe473b985b 343 Gene3D G3DSA:1.10.8.60 185 235 6.7E-5 T 06-07-2017 CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 Gene3D G3DSA:3.40.710.10 11 255 7.4E-79 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 SUPERFAMILY SSF56601 5 254 8.07E-69 T 06-07-2017 IPR012338 Beta-lactamase/transpeptidase-like CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 16 237 2.9E-53 T 06-07-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 137 1.6E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 44 55 1.6E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS13685 2c9209ebd5d7a2436e8127378b9a3f12 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 97 114 1.6E-14 T 06-07-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDO28_RS18800 318e66add0b1fb3193b2322fe5452a97 202 Gene3D G3DSA:2.30.110.10 24 146 1.3E-25 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS18800 318e66add0b1fb3193b2322fe5452a97 202 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 8 202 2.3E-78 T 06-07-2017 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent CDO28_RS18800 318e66add0b1fb3193b2322fe5452a97 202 SUPERFAMILY SSF50475 24 174 1.51E-25 T 06-07-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 CDO28_RS18800 318e66add0b1fb3193b2322fe5452a97 202 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 29 120 1.8E-16 T 06-07-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDO28_RS02830 ed49dddb29bd8fb3bdc0a188b1ab9080 94 SUPERFAMILY SSF82771 2 89 3.14E-21 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS02830 ed49dddb29bd8fb3bdc0a188b1ab9080 94 Pfam PF01541 GIY-YIG catalytic domain 3 75 1.5E-14 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS02830 ed49dddb29bd8fb3bdc0a188b1ab9080 94 Gene3D G3DSA:3.40.1440.10 3 35 1.5E-5 T 06-07-2017 IPR027299 GIY-YIG domain CDO28_RS02830 ed49dddb29bd8fb3bdc0a188b1ab9080 94 SMART SM00465 2 80 1.2E-4 T 06-07-2017 IPR000305 GIY-YIG nuclease superfamily CDO28_RS33385 d1ba9b40e9a51dbc618715ac967f9231 246 SUPERFAMILY SSF52540 7 45 3.9E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33385 d1ba9b40e9a51dbc618715ac967f9231 246 SUPERFAMILY SSF52540 89 245 3.9E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS33385 d1ba9b40e9a51dbc618715ac967f9231 246 Pfam PF03567 Sulfotransferase family 2 242 3.9E-15 T 06-07-2017 IPR005331 Sulfotransferase GO:0008146|GO:0016021 CDO28_RS04525 a032bdcae75001617dd119d043e736f3 411 Pfam PF07690 Major Facilitator Superfamily 204 384 9.5E-22 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS04525 a032bdcae75001617dd119d043e736f3 411 SUPERFAMILY SSF103473 5 384 6.54E-39 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS04525 a032bdcae75001617dd119d043e736f3 411 Gene3D G3DSA:1.20.1250.20 6 172 1.8E-10 T 06-07-2017 CDO28_RS04525 a032bdcae75001617dd119d043e736f3 411 Gene3D G3DSA:1.20.1250.20 202 377 2.3E-24 T 06-07-2017 CDO28_RS19770 8c27cd69544586e40de1e18a8c853b89 94 Gene3D G3DSA:3.40.50.2300 2 86 6.6E-15 T 06-07-2017 CDO28_RS19770 8c27cd69544586e40de1e18a8c853b89 94 SUPERFAMILY SSF52172 3 84 1.57E-9 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS11860 a4edd348c15e934f7270aa9fd442a48b 509 SUPERFAMILY SSF53474 218 505 3.92E-18 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS11860 a4edd348c15e934f7270aa9fd442a48b 509 Gene3D G3DSA:3.40.50.1820 228 506 9.7E-18 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS15120 4a3545faa45dca413ab4fe6ded260c17 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 130 10.401 T 06-07-2017 IPR022907 VapC family GO:0004540 CDO28_RS15120 4a3545faa45dca413ab4fe6ded260c17 134 Gene3D G3DSA:3.40.50.1010 3 132 3.0E-34 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS15120 4a3545faa45dca413ab4fe6ded260c17 134 SUPERFAMILY SSF88723 3 133 7.57E-36 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS15120 4a3545faa45dca413ab4fe6ded260c17 134 SMART SM00670 2 121 6.9E-14 T 06-07-2017 IPR002716 PIN domain CDO28_RS15120 4a3545faa45dca413ab4fe6ded260c17 134 Pfam PF01850 PIN domain 4 124 4.4E-18 T 06-07-2017 IPR002716 PIN domain CDO28_RS26915 58dd89dc81446af4de0f9ffe106007cd 394 Pfam PF07690 Major Facilitator Superfamily 9 346 6.6E-36 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS26915 58dd89dc81446af4de0f9ffe106007cd 394 Gene3D G3DSA:1.20.1250.20 2 179 8.0E-25 T 06-07-2017 CDO28_RS26915 58dd89dc81446af4de0f9ffe106007cd 394 Gene3D G3DSA:1.20.1250.20 201 386 3.5E-10 T 06-07-2017 CDO28_RS26915 58dd89dc81446af4de0f9ffe106007cd 394 SUPERFAMILY SSF103473 5 387 6.28E-48 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS16685 ca1d8cab94b3005637db6205ca42095f 128 SUPERFAMILY SSF55021 3 58 8.7E-14 T 06-07-2017 CDO28_RS16685 ca1d8cab94b3005637db6205ca42095f 128 PIRSF PIRSF008459 3 128 1.2E-23 T 06-07-2017 IPR016540 Uncharacterised conserved protein UCP008459 CDO28_RS16685 ca1d8cab94b3005637db6205ca42095f 128 Gene3D G3DSA:3.30.2130.10 8 124 1.3E-17 T 06-07-2017 CDO28_RS16685 ca1d8cab94b3005637db6205ca42095f 128 Pfam PF13840 ACT domain 60 121 1.3E-17 T 06-07-2017 IPR027795 GATS-like ACT domain CDO28_RS16685 ca1d8cab94b3005637db6205ca42095f 128 SUPERFAMILY SSF55021 62 126 9.41E-18 T 06-07-2017 CDO28_RS09090 64e58e0f6d7b2b1edc8dd2160ad70a75 316 Pfam PF00248 Aldo/keto reductase family 15 315 1.2E-66 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS09090 64e58e0f6d7b2b1edc8dd2160ad70a75 316 SUPERFAMILY SSF51430 1 314 4.32E-90 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS09090 64e58e0f6d7b2b1edc8dd2160ad70a75 316 Gene3D G3DSA:3.20.20.100 1 314 1.3E-87 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS08265 9a960c071e98a11348ad665a0b64a9a2 162 Gene3D G3DSA:3.30.1330.40 32 161 2.9E-30 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS08265 9a960c071e98a11348ad665a0b64a9a2 162 SUPERFAMILY SSF55298 32 161 1.37E-25 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS08265 9a960c071e98a11348ad665a0b64a9a2 162 Pfam PF01042 Endoribonuclease L-PSP 47 160 9.5E-17 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS31300 3240634a66bbab2f0055af31ce0e3069 164 Pfam PF10002 Predicted membrane protein (DUF2243) 15 157 2.7E-52 T 06-07-2017 IPR018719 Protein of unknown function DUF2243, membrane CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 Gene3D G3DSA:3.30.70.260 140 208 3.6E-21 T 06-07-2017 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 225 1.6E-79 T 06-07-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 228 32.69 T 06-07-2017 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 SUPERFAMILY SSF100950 2 145 2.25E-42 T 06-07-2017 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 SUPERFAMILY SSF75445 128 211 6.41E-19 T 06-07-2017 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 224 1.1E-59 T 06-07-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDO28_RS18820 92ce6b332985cfc73c750181fc46efa0 231 Gene3D G3DSA:3.40.50.1360 5 139 1.9E-55 T 06-07-2017 CDO28_RS06545 1e596a9c95859856c39febb507d6547e 78 Pfam PF13773 Domain of unknown function (DUF4170) 8 75 2.2E-39 T 06-07-2017 IPR025226 Protein of unknown function DUF4170 CDO28_RS08365 af92b04e8d4d2edb371411f0960ac435 304 SUPERFAMILY SSF103481 206 302 6.8E-10 T 06-07-2017 CDO28_RS08365 af92b04e8d4d2edb371411f0960ac435 304 Pfam PF00892 EamA-like transporter family 4 140 3.5E-9 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08365 af92b04e8d4d2edb371411f0960ac435 304 Pfam PF00892 EamA-like transporter family 199 302 3.4E-7 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08365 af92b04e8d4d2edb371411f0960ac435 304 SUPERFAMILY SSF103481 38 142 3.27E-9 T 06-07-2017 CDO28_RS14390 3e2640e11d75a84dd8c46c10d09a69f2 317 SUPERFAMILY SSF51735 134 269 1.0E-8 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14390 3e2640e11d75a84dd8c46c10d09a69f2 317 Gene3D G3DSA:3.40.50.720 136 269 1.1E-12 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS10550 118c1eca2330db356d6e743d1feab381 501 Pfam PF08666 SAF domain 13 80 1.3E-14 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS10550 118c1eca2330db356d6e743d1feab381 501 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 105 499 7.4E-155 T 06-07-2017 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 CDO28_RS10550 118c1eca2330db356d6e743d1feab381 501 SMART SM00858 13 81 2.0E-15 T 06-07-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 CDO28_RS28515 2dfc52679397273f063074b4109ad851 322 SUPERFAMILY SSF53822 26 316 4.54E-67 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS28515 2dfc52679397273f063074b4109ad851 322 Gene3D G3DSA:3.40.50.2300 146 316 2.6E-46 T 06-07-2017 CDO28_RS28515 2dfc52679397273f063074b4109ad851 322 Pfam PF13407 Periplasmic binding protein domain 29 291 1.7E-48 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS28515 2dfc52679397273f063074b4109ad851 322 Gene3D G3DSA:3.40.50.2300 26 145 4.4E-31 T 06-07-2017 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 Gene3D G3DSA:1.10.10.10 25 161 7.0E-33 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 Pfam PF01047 MarR family 61 109 9.4E-11 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 SUPERFAMILY SSF46785 26 161 1.03E-28 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 SMART SM00347 46 146 1.9E-17 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 2.6E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 136 156 2.6E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 2.6E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS12770 ab12e070d4061f1f6c8aee00f67797e2 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 2.6E-7 T 06-07-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 307 3.0E-19 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 SUPERFAMILY SSF111369 56 311 4.18E-16 T 06-07-2017 CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 Gene3D G3DSA:2.40.50.100 67 99 1.1E-10 T 06-07-2017 CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 Gene3D G3DSA:2.40.50.100 202 234 1.1E-10 T 06-07-2017 CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 122 385 9.3E-35 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS14900 b1328b8022e7098647ed05de60329582 395 Gene3D G3DSA:1.20.1600.10 100 192 9.5E-4 T 06-07-2017 CDO28_RS09220 0469c1d8e4a376c272d742a0b803027f 135 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 57 130 7.4E-18 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS09220 0469c1d8e4a376c272d742a0b803027f 135 Gene3D G3DSA:1.10.286.20 11 50 1.0E-4 T 06-07-2017 CDO28_RS09220 0469c1d8e4a376c272d742a0b803027f 135 Pfam PF14760 Rnk N-terminus 11 50 1.1E-10 T 06-07-2017 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain CDO28_RS09220 0469c1d8e4a376c272d742a0b803027f 135 SUPERFAMILY SSF54534 56 132 5.76E-16 T 06-07-2017 CDO28_RS09220 0469c1d8e4a376c272d742a0b803027f 135 Gene3D G3DSA:3.10.50.30 54 133 4.4E-23 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS05910 e6189b4408d8e5adaacbaf211bda69fe 73 Pfam PF04480 Protein of unknown function (DUF559) 12 47 1.7E-9 T 06-07-2017 IPR007569 Domain of unknown function DUF559 CDO28_RS23595 f3583b003cdff57d260ab377c30b0210 328 PIRSF PIRSF017082 1 326 8.6E-68 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS23595 f3583b003cdff57d260ab377c30b0210 328 SUPERFAMILY SSF53850 111 291 1.78E-13 T 06-07-2017 CDO28_RS23595 f3583b003cdff57d260ab377c30b0210 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 324 6.3E-70 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS14910 e062ac33be5d663c4fbd3f65188ab670 289 SUPERFAMILY SSF161098 94 263 6.93E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14910 e062ac33be5d663c4fbd3f65188ab670 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 277 1.2E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14910 e062ac33be5d663c4fbd3f65188ab670 289 Gene3D G3DSA:1.10.3720.10 93 275 6.7E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20080 d20fcb0f34edfa56b80cb5c25485f1e5 170 SUPERFAMILY SSF52540 5 168 6.85E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS20080 d20fcb0f34edfa56b80cb5c25485f1e5 170 Gene3D G3DSA:3.40.50.300 5 165 3.0E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09995 4e0e6e4759712037a64d66ec83d1175a 471 Gene3D G3DSA:3.20.20.120 213 353 1.0E-8 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS09995 4e0e6e4759712037a64d66ec83d1175a 471 SUPERFAMILY SSF51604 209 416 1.19E-11 T 06-07-2017 IPR029065 Enolase C-terminal domain-like CDO28_RS08125 4d66dd5a5e24efc55caef03b5f774792 360 Pfam PF02653 Branched-chain amino acid transport system / permease component 77 349 3.0E-50 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS19785 cc5b250117173eac82aacc3621e3c975 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 248 2.2E-30 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS19785 cc5b250117173eac82aacc3621e3c975 338 Gene3D G3DSA:3.40.190.10 15 140 2.4E-22 T 06-07-2017 CDO28_RS19785 cc5b250117173eac82aacc3621e3c975 338 SMART SM00062 34 263 5.4E-43 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS19785 cc5b250117173eac82aacc3621e3c975 338 Gene3D G3DSA:3.40.190.10 141 209 1.3E-12 T 06-07-2017 CDO28_RS19785 cc5b250117173eac82aacc3621e3c975 338 SUPERFAMILY SSF53850 25 257 7.09E-45 T 06-07-2017 CDO28_RS27285 2c0229622e103472df0782707b5e516d 249 Pfam PF06823 Protein of unknown function (DUF1236) 178 248 3.0E-16 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS27275 4aeac88b5864d1a23fb9141ee3a033a4 165 Pfam PF04972 BON domain 89 153 1.8E-11 T 06-07-2017 IPR007055 BON domain CDO28_RS27275 4aeac88b5864d1a23fb9141ee3a033a4 165 SMART SM00749 93 156 1.4E-9 T 06-07-2017 IPR014004 Transport-associated and nodulation domain, bacteria CDO28_RS32855 cb2e1b4b87606c6df01720ccaf1fac50 356 Gene3D G3DSA:3.30.420.40 187 353 1.6E-18 T 06-07-2017 CDO28_RS32855 cb2e1b4b87606c6df01720ccaf1fac50 356 SUPERFAMILY SSF53067 132 322 1.73E-23 T 06-07-2017 CDO28_RS32855 cb2e1b4b87606c6df01720ccaf1fac50 356 Pfam PF00480 ROK family 189 352 1.7E-5 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS31290 e59877df8343aed0e1ad0a473c2fb79e 313 Gene3D G3DSA:3.20.20.140 1 285 2.9E-58 T 06-07-2017 CDO28_RS31290 e59877df8343aed0e1ad0a473c2fb79e 313 Pfam PF04909 Amidohydrolase 3 280 3.7E-44 T 06-07-2017 IPR006680 Amidohydrolase-related GO:0016787 CDO28_RS31290 e59877df8343aed0e1ad0a473c2fb79e 313 SUPERFAMILY SSF51556 1 284 3.57E-52 T 06-07-2017 IPR032466 Metal-dependent hydrolase CDO28_RS32025 d7ed6981d1d33a32899c558fcae7dfa4 449 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 346 366 - T 06-07-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDO28_RS32025 d7ed6981d1d33a32899c558fcae7dfa4 449 Pfam PF00860 Permease family 20 398 1.1E-65 T 06-07-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 SMART SM00382 28 225 4.9E-8 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 SUPERFAMILY SSF52540 1 231 1.1E-41 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 Gene3D G3DSA:3.40.50.300 1 233 1.1E-47 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 245 1.7E-104 T 06-07-2017 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 CDO28_RS00605 e3eb15a20f906de8fcab553c260300d3 251 Pfam PF00005 ABC transporter 20 174 3.9E-21 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14730 4fb96acb58749c4a81db66d8b7f50d3f 97 Pfam PF08808 RES domain 17 62 1.1E-8 T 06-07-2017 IPR014914 RES domain CDO28_RS34315 0192cb7935423bcfde5318f7c0b14a9f 706 Gene3D G3DSA:3.40.50.300 333 529 1.0E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34315 0192cb7935423bcfde5318f7c0b14a9f 706 Gene3D G3DSA:3.40.50.300 121 196 1.0E-49 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34315 0192cb7935423bcfde5318f7c0b14a9f 706 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 103 533 2.8E-92 T 06-07-2017 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 CDO28_RS34315 0192cb7935423bcfde5318f7c0b14a9f 706 SUPERFAMILY SSF52540 113 529 5.04E-45 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS00465 2c34f6f829162ea5267757ab2c2eac0c 269 Pfam PF09955 Predicted integral membrane protein (DUF2189) 72 198 1.5E-39 T 06-07-2017 IPR018692 Predicted integral membrane protein DUF2189 CDO28_RS24935 68038ca05a23e2551813bf05de9d3295 118 Pfam PF02661 Fic/DOC family 7 71 6.5E-13 T 06-07-2017 IPR003812 Fido domain CDO28_RS24935 68038ca05a23e2551813bf05de9d3295 118 Gene3D G3DSA:1.10.3290.10 2 80 1.2E-18 T 06-07-2017 IPR003812 Fido domain CDO28_RS24935 68038ca05a23e2551813bf05de9d3295 118 SUPERFAMILY SSF140931 7 80 3.92E-17 T 06-07-2017 IPR003812 Fido domain CDO28_RS30070 175c53e4cd0ecea7dd06630d4fefd4aa 166 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 18 154 2.4E-16 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 Gene3D G3DSA:3.40.50.300 6 241 3.7E-78 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 SUPERFAMILY SSF50331 245 358 1.7E-15 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 39 356 7.9E-110 T 06-07-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 Pfam PF08402 TOBE domain 281 357 1.5E-17 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 SUPERFAMILY SSF52540 9 248 8.83E-85 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 Pfam PF00005 ABC transporter 26 168 1.1E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS16040 4986a5504fd1857a19628f52b34e44d8 359 SMART SM00382 33 218 1.5E-20 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS06130 d971c4d7793fbe0b263802672f722ac4 201 Pfam PF02361 Cobalt transport protein 10 199 2.5E-10 T 06-07-2017 IPR003339 ABC/ECF transporter, transmembrane component CDO28_RS09930 0e76f31ad70423312075a5268edc2eaf 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 7.3E-70 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS09930 0e76f31ad70423312075a5268edc2eaf 209 Gene3D G3DSA:3.40.50.2020 4 209 5.8E-79 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS09930 0e76f31ad70423312075a5268edc2eaf 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 45.398 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CDO28_RS09930 0e76f31ad70423312075a5268edc2eaf 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 209 3.7E-83 T 06-07-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CDO28_RS09930 0e76f31ad70423312075a5268edc2eaf 209 SUPERFAMILY SSF53271 4 207 1.57E-68 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS33660 e852e8e7a5e99bcfee8d17bf8ab67f57 1004 Pfam PF13502 AsmA-like C-terminal region 669 857 7.7E-26 T 06-07-2017 IPR032712 AsmA-like, C-terminal CDO28_RS33660 e852e8e7a5e99bcfee8d17bf8ab67f57 1004 Pfam PF05170 AsmA family 6 115 3.8E-9 T 06-07-2017 IPR007844 AsmA CDO28_RS07255 7b4010ce56e1202f69abdf5bf1492209 475 Pfam PF02120 Flagellar hook-length control protein FliK 331 409 1.0E-16 T 06-07-2017 IPR021136 Flagellar hook-length control protein-like, C-terminal CDO28_RS06350 00262ae2b4bd49f6391bb2230a0e53aa 73 Pfam PF09413 Putative prokaryotic signal transducing protein 1 65 7.5E-22 T 06-07-2017 IPR018551 Domain of unknown function DUF2007 CDO28_RS06350 00262ae2b4bd49f6391bb2230a0e53aa 73 Gene3D G3DSA:3.30.70.790 1 73 1.8E-36 T 06-07-2017 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CDO28_RS06350 00262ae2b4bd49f6391bb2230a0e53aa 73 SUPERFAMILY SSF54913 1 72 1.38E-25 T 06-07-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta CDO28_RS25165 7c13a85f23e21dfaf8a212e1191f58fb 66 SUPERFAMILY SSF160935 18 64 1.44E-13 T 06-07-2017 CDO28_RS25165 7c13a85f23e21dfaf8a212e1191f58fb 66 Gene3D G3DSA:2.60.120.600 18 64 2.7E-12 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS14990 fcc910300743b55111623a3addea57ac 290 Gene3D G3DSA:1.10.3720.10 7 281 8.0E-46 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14990 fcc910300743b55111623a3addea57ac 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 288 1.0E-12 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14990 fcc910300743b55111623a3addea57ac 290 SUPERFAMILY SSF161098 53 278 2.35E-47 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14430 e90cc7022387dbfd914865e793b882d1 356 Pfam PF02615 Malate/L-lactate dehydrogenase 10 338 1.0E-99 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS14430 e90cc7022387dbfd914865e793b882d1 356 Gene3D G3DSA:3.30.1370.60 76 281 6.1E-67 T 06-07-2017 CDO28_RS14430 e90cc7022387dbfd914865e793b882d1 356 SUPERFAMILY SSF89733 7 340 5.62E-94 T 06-07-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS14430 e90cc7022387dbfd914865e793b882d1 356 Gene3D G3DSA:1.10.1530.10 6 75 1.9E-16 T 06-07-2017 CDO28_RS29750 d1e3dd3462cb2b829bdcab405fc4efe3 114 Pfam PF03929 PepSY-associated TM region 9 70 2.5E-8 T 06-07-2017 IPR005625 PepSY-associated TM protein CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 SUPERFAMILY SSF51120 115 354 7.59E-18 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 110 124 0.0038 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 50 66 0.44 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 134 150 0.05 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 163 177 0.28 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 244 258 0.032 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 190 206 0.026 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 216 232 0.39 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 77 93 0.17 T 06-07-2017 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Gene3D G3DSA:2.150.10.10 16 141 1.4E-14 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 Gene3D G3DSA:2.150.10.10 142 352 6.4E-26 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 PRINTS PR00313 NodO calcium binding signature 143 151 3.4E-11 T 06-07-2017 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 PRINTS PR00313 NodO calcium binding signature 114 125 3.4E-11 T 06-07-2017 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 PRINTS PR00313 NodO calcium binding signature 170 178 3.4E-11 T 06-07-2017 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 PRINTS PR00313 NodO calcium binding signature 199 208 3.4E-11 T 06-07-2017 CDO28_RS02075 aeb184e679fe9a64f58f592f5b6aa77c 359 SUPERFAMILY SSF51120 18 97 2.04E-5 T 06-07-2017 IPR011049 Serralysin-like metalloprotease, C-terminal CDO28_RS11480 93af39703c243b596b3130b624abfd8a 68 Pfam PF08410 Domain of unknown function (DUF1737) 2 53 8.4E-28 T 06-07-2017 IPR013619 Domain of unknown function DUF1737 CDO28_RS03875 abe71616c87df005cccf2ed1ab9adeae 165 Gene3D G3DSA:3.40.630.30 1 145 1.1E-34 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS03875 abe71616c87df005cccf2ed1ab9adeae 165 Pfam PF13673 Acetyltransferase (GNAT) domain 32 145 9.2E-16 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS03875 abe71616c87df005cccf2ed1ab9adeae 165 SUPERFAMILY SSF55729 2 163 6.97E-26 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 SUPERFAMILY SSF51735 15 249 5.31E-71 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 Gene3D G3DSA:3.40.50.720 13 249 1.1E-72 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 247 3.7E-55 T 06-07-2017 CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 8.7E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.7E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 8.7E-11 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 06-07-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS14355 63f1cf5d419cb37ed9f2109cb5619760 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.1E-35 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS09880 d543dac9dd11c43ed4960367dfa866cc 242 TIGRFAM TIGR02522 pilus_cpaD: pilus (Caulobacter type) biogenesis lipoprotein CpaD 27 229 2.3E-82 T 06-07-2017 IPR013361 Pilus biogenesis CpaD CDO28_RS09880 d543dac9dd11c43ed4960367dfa866cc 242 Pfam PF09476 Pilus biogenesis CpaD protein (pilus_cpaD) 31 228 7.6E-67 T 06-07-2017 IPR019027 Pilus biogenesis CpaD-related CDO28_RS12150 e94f4605602059f6116175400e992c95 298 Pfam PF00480 ROK family 3 298 4.5E-76 T 06-07-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDO28_RS12150 e94f4605602059f6116175400e992c95 298 Gene3D G3DSA:3.30.420.40 132 277 6.4E-43 T 06-07-2017 CDO28_RS12150 e94f4605602059f6116175400e992c95 298 SUPERFAMILY SSF53067 1 297 1.02E-58 T 06-07-2017 CDO28_RS12150 e94f4605602059f6116175400e992c95 298 Gene3D G3DSA:3.30.420.40 1 131 4.6E-37 T 06-07-2017 CDO28_RS09745 42a18de6f36f3cdef9c175bd8b8bd199 122 Gene3D G3DSA:3.40.50.300 1 115 3.8E-16 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09745 42a18de6f36f3cdef9c175bd8b8bd199 122 Pfam PF13671 AAA domain 2 116 5.1E-14 T 06-07-2017 CDO28_RS09745 42a18de6f36f3cdef9c175bd8b8bd199 122 SUPERFAMILY SSF52540 1 120 8.74E-18 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS18445 089867385051a98751c960cf5bd1d330 114 Pfam PF04956 TrbC/VIRB2 family 11 104 4.1E-25 T 06-07-2017 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 CDO28_RS13840 c923aabd3fbab68fd665a2e4a15e2915 232 Gene3D G3DSA:3.40.50.620 57 172 1.4E-12 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS13840 c923aabd3fbab68fd665a2e4a15e2915 232 Pfam PF02698 DUF218 domain 62 199 2.0E-13 T 06-07-2017 IPR003848 Domain of unknown function DUF218 CDO28_RS13840 c923aabd3fbab68fd665a2e4a15e2915 232 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 31 180 3.0E-4 T 06-07-2017 CDO28_RS22305 467921e7ffd76acfa322eb4f165ee774 102 ProDom PD020316 SIMILAR NODULATION 5'REGION NFE1 ORF1 MOSA NIFH PLASMID 1 97 2.0E-40 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 Gene3D G3DSA:3.30.930.10 250 251 4.0E-48 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 Gene3D G3DSA:3.30.930.10 17 162 4.0E-48 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 Gene3D G3DSA:3.30.930.10 287 373 4.0E-48 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 Pfam PF13393 Histidyl-tRNA synthetase 13 369 3.6E-31 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 SUPERFAMILY SSF55681 257 373 8.3E-46 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 SUPERFAMILY SSF55681 17 169 8.3E-46 T 06-07-2017 CDO28_RS06655 a0588a53615deb2a1e3c86dd3aaab1fe 379 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 1 363 23.338 T 06-07-2017 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 Pfam PF07690 Major Facilitator Superfamily 23 413 3.4E-49 T 06-07-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 Gene3D G3DSA:1.20.1250.20 12 199 4.0E-32 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 Gene3D G3DSA:1.20.1250.20 269 424 3.7E-16 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 Gene3D G3DSA:1.20.1250.20 474 498 3.7E-16 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 SUPERFAMILY SSF103473 473 500 6.41E-65 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 SUPERFAMILY SSF103473 8 202 6.41E-65 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 SUPERFAMILY SSF103473 252 423 6.41E-65 T 06-07-2017 IPR020846 Major facilitator superfamily domain CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 5.3E-9 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 113 133 5.3E-9 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 143 167 5.3E-9 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 168 192 5.3E-9 T 06-07-2017 CDO28_RS21220 a96a0a62e893a9bafe7a0f35fa70c08f 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 404 423 5.3E-9 T 06-07-2017 CDO28_RS02640 872e4c89c57f711455313d1e87cbdf5a 66 Pfam PF06568 Domain of unknown function (DUF1127) 22 57 6.4E-16 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS14775 960a32a859669bf18cc06504f81e4a9c 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 284 1.2E-51 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS13900 15a72755a9d53d17ad44128010310f1a 224 Pfam PF08534 Redoxin 85 213 9.4E-17 T 06-07-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CDO28_RS13900 15a72755a9d53d17ad44128010310f1a 224 SUPERFAMILY SSF52833 65 218 7.42E-30 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS13900 15a72755a9d53d17ad44128010310f1a 224 ProSitePatterns PS00194 Thioredoxin family active site. 103 121 - T 06-07-2017 IPR017937 Thioredoxin, conserved site GO:0045454 CDO28_RS13900 15a72755a9d53d17ad44128010310f1a 224 Gene3D G3DSA:3.40.30.10 16 35 6.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS13900 15a72755a9d53d17ad44128010310f1a 224 Gene3D G3DSA:3.40.30.10 72 219 6.2E-33 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS15970 1bf4c9028ff14a09d87e25d2b2a95e4f 275 Gene3D G3DSA:1.10.3720.10 63 265 7.1E-21 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15970 1bf4c9028ff14a09d87e25d2b2a95e4f 275 SUPERFAMILY SSF161098 64 264 1.44E-20 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15970 1bf4c9028ff14a09d87e25d2b2a95e4f 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 263 4.2E-26 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS23230 025cb93896f6b61853f7632a0a55baae 488 Pfam PF00817 impB/mucB/samB family 2 130 9.3E-8 T 06-07-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS23230 025cb93896f6b61853f7632a0a55baae 488 Gene3D G3DSA:1.10.150.20 171 219 3.4E-4 T 06-07-2017 CDO28_RS23230 025cb93896f6b61853f7632a0a55baae 488 SUPERFAMILY SSF56672 4 217 7.45E-36 T 06-07-2017 CDO28_RS31770 d9545a897b0dc1d5808d813eb438693f 346 Gene3D G3DSA:3.90.25.10 183 321 2.3E-55 T 06-07-2017 CDO28_RS31770 d9545a897b0dc1d5808d813eb438693f 346 Gene3D G3DSA:3.40.50.720 7 182 1.5E-51 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31770 d9545a897b0dc1d5808d813eb438693f 346 SUPERFAMILY SSF51735 8 320 1.14E-83 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS31770 d9545a897b0dc1d5808d813eb438693f 346 Pfam PF16363 GDP-mannose 4,6 dehydratase 14 312 3.7E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SUPERFAMILY SSF48452 402 557 3.41E-32 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 12 163 5.0E-12 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 Gene3D G3DSA:1.25.40.10 348 557 8.3E-40 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 Pfam PF13432 Tetratricopeptide repeat 495 551 5.3E-4 T 06-07-2017 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SUPERFAMILY SSF55073 7 181 4.87E-43 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 Gene3D G3DSA:3.30.70.1230 10 183 7.0E-28 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SMART SM00028 421 454 6.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SMART SM00028 523 556 11.0 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SMART SM00028 489 522 8.1 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 SMART SM00028 455 488 4.2E-4 T 06-07-2017 IPR019734 Tetratricopeptide repeat GO:0005515 CDO28_RS24895 196cded401cd44d3d7d3ad20c3c72837 587 Pfam PF13424 Tetratricopeptide repeat 425 486 3.0E-8 T 06-07-2017 CDO28_RS19130 b257be40b85a260317f80f31343a5415 233 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1 28 1.0E-10 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19130 b257be40b85a260317f80f31343a5415 233 Pfam PF12951 Passenger-associated-transport-repeat 1 28 5.9E-9 T 06-07-2017 IPR013425 Autotransporter-associated beta strand repeat CDO28_RS19130 b257be40b85a260317f80f31343a5415 233 Gene3D G3DSA:2.160.20.20 1 38 4.8E-4 T 06-07-2017 IPR012332 P22 tailspike C-terminal domain-like CDO28_RS26220 8e518d388d91bd0a9707d7480672232a 436 SUPERFAMILY SSF53850 33 281 1.19E-22 T 06-07-2017 CDO28_RS26220 8e518d388d91bd0a9707d7480672232a 436 Gene3D G3DSA:3.40.190.10 166 269 4.4E-8 T 06-07-2017 CDO28_RS26220 8e518d388d91bd0a9707d7480672232a 436 Pfam PF13379 NMT1-like family 32 293 1.7E-74 T 06-07-2017 CDO28_RS32710 7fd364e424ca35b457285163e77e8f34 334 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CDO28_RS32710 7fd364e424ca35b457285163e77e8f34 334 Gene3D G3DSA:3.40.50.1100 75 322 3.5E-64 T 06-07-2017 CDO28_RS32710 7fd364e424ca35b457285163e77e8f34 334 SUPERFAMILY SSF53686 8 318 4.71E-84 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS32710 7fd364e424ca35b457285163e77e8f34 334 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 310 2.8E-69 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS32710 7fd364e424ca35b457285163e77e8f34 334 TIGRFAM TIGR02991 ectoine_eutB: ectoine utilization protein EutB 7 324 1.4E-177 T 06-07-2017 IPR014333 Ectoine utilization protein EutB KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDO28_RS31850 9f6e52742790e2ab99e7ede0471b8136 183 Pfam PF06210 Protein of unknown function (DUF1003) 54 151 3.3E-25 T 06-07-2017 IPR010406 Protein of unknown function DUF1003 CDO28_RS18625 13bc80d747350f1fc5fd258b7638b06c 398 Pfam PF06904 Extensin-like protein C-terminus 221 397 6.0E-55 T 06-07-2017 IPR009683 Extensin-like, C-terminal CDO28_RS24885 3d5f3e61965ef5e3c5f2827b8675de2c 170 Pfam PF13629 Pilus formation protein N terminal region 45 110 2.6E-18 T 06-07-2017 IPR032789 Pilus formation protein, N-terminal CDO28_RS33105 ee90879d25a31b1aa763e27b1ac1089a 97 Gene3D G3DSA:3.30.70.1060 18 83 9.3E-5 T 06-07-2017 CDO28_RS33105 ee90879d25a31b1aa763e27b1ac1089a 97 SUPERFAMILY SSF54909 2 75 6.43E-9 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS00770 1e7ef480d67e40194a2ca8b0eae91b50 146 Pfam PF14534 Domain of unknown function (DUF4440) 30 135 2.9E-10 T 06-07-2017 IPR027843 Domain of unknown function DUF4440 CDO28_RS00770 1e7ef480d67e40194a2ca8b0eae91b50 146 Gene3D G3DSA:3.10.450.50 20 140 5.5E-15 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS00770 1e7ef480d67e40194a2ca8b0eae91b50 146 SUPERFAMILY SSF54427 28 146 1.28E-23 T 06-07-2017 IPR032710 NTF2-like domain CDO28_RS12815 c1382da862886201874d7d1bedc0d724 406 SMART SM00044 162 381 0.0046 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS12815 c1382da862886201874d7d1bedc0d724 406 Gene3D G3DSA:3.30.70.1230 217 400 2.4E-25 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS12815 c1382da862886201874d7d1bedc0d724 406 SUPERFAMILY SSF55073 212 401 7.38E-40 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS12815 c1382da862886201874d7d1bedc0d724 406 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 220 392 2.5E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS34590 6817ea932cbfe623c001cdbe79f0656a 155 Gene3D G3DSA:3.40.50.2300 3 115 3.3E-22 T 06-07-2017 CDO28_RS34590 6817ea932cbfe623c001cdbe79f0656a 155 Pfam PF00072 Response regulator receiver domain 6 115 3.1E-8 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS34590 6817ea932cbfe623c001cdbe79f0656a 155 SUPERFAMILY SSF52172 2 116 6.55E-17 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS34590 6817ea932cbfe623c001cdbe79f0656a 155 SMART SM00448 4 115 1.5E-5 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS21645 50ce5123fe41f0fec2d878bac4c8e53c 87 Pfam PF11391 Protein of unknown function (DUF2798) 24 81 1.7E-18 T 06-07-2017 IPR021529 Protein of unknown function DUF2798 CDO28_RS14230 850e4ab451727cf08e895572231bb683 222 Pfam PF00857 Isochorismatase family 28 215 1.7E-33 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS14230 850e4ab451727cf08e895572231bb683 222 Gene3D G3DSA:3.40.50.850 8 219 1.2E-56 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS14230 850e4ab451727cf08e895572231bb683 222 SUPERFAMILY SSF52499 9 220 8.11E-50 T 06-07-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CDO28_RS27565 83c3eab59f02d018d0b66ca7095a2e86 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 8.3E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27565 83c3eab59f02d018d0b66ca7095a2e86 275 Gene3D G3DSA:1.10.3720.10 75 270 1.2E-28 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27565 83c3eab59f02d018d0b66ca7095a2e86 275 SUPERFAMILY SSF161098 75 260 6.54E-36 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS07220 b58d2955c9bb0dbfa534889c7ddc8a07 149 Pfam PF07378 Flagellar protein FlbT 5 128 2.3E-42 T 06-07-2017 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 CDO28_RS07220 b58d2955c9bb0dbfa534889c7ddc8a07 149 PIRSF PIRSF009533 3 147 6.5E-68 T 06-07-2017 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 CDO28_RS07220 b58d2955c9bb0dbfa534889c7ddc8a07 149 Hamap MF_00783 Probable flagellum biosynthesis repressor protein FlbT [flbT]. 5 130 31.961 T 06-07-2017 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 CDO28_RS16580 9524634175b79ca231ed980e8a43a4cb 398 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 79 381 1.3E-71 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS16580 9524634175b79ca231ed980e8a43a4cb 398 SUPERFAMILY SSF111369 92 306 2.75E-34 T 06-07-2017 CDO28_RS16580 9524634175b79ca231ed980e8a43a4cb 398 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 101 300 3.1E-29 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS16580 9524634175b79ca231ed980e8a43a4cb 398 Gene3D G3DSA:2.40.50.100 196 227 7.5E-15 T 06-07-2017 CDO28_RS16580 9524634175b79ca231ed980e8a43a4cb 398 Gene3D G3DSA:2.40.50.100 102 135 7.5E-15 T 06-07-2017 CDO28_RS18640 f104bcd0c35057c76761be5c84167e7e 96 Gene3D G3DSA:1.20.5.780 8 88 5.0E-25 T 06-07-2017 CDO28_RS18640 f104bcd0c35057c76761be5c84167e7e 96 Pfam PF08681 Protein of unknown function (DUF1778) 11 87 1.1E-24 T 06-07-2017 IPR014795 Vibrio phage ICP1, Orf50 CDO28_RS18640 f104bcd0c35057c76761be5c84167e7e 96 SUPERFAMILY SSF47598 8 85 4.22E-18 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS25210 9015bd5e044b9e8b45f055f233d29110 409 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 35 395 6.7E-99 T 06-07-2017 IPR010640 Low temperature requirement A CDO28_RS18400 cd66369a9dc09717a6e626fcffe355eb 288 Pfam PF09347 Domain of unknown function (DUF1989) 52 233 1.1E-56 T 06-07-2017 IPR018959 Domain of unknown function DUF1989 CDO28_RS15575 44c28dd3c9de0f25b80d214218230bbc 300 SUPERFAMILY SSF103481 39 140 2.09E-9 T 06-07-2017 CDO28_RS15575 44c28dd3c9de0f25b80d214218230bbc 300 Pfam PF00892 EamA-like transporter family 149 281 5.1E-14 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS15575 44c28dd3c9de0f25b80d214218230bbc 300 Pfam PF00892 EamA-like transporter family 7 139 5.1E-17 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS15575 44c28dd3c9de0f25b80d214218230bbc 300 SUPERFAMILY SSF103481 194 284 7.45E-12 T 06-07-2017 CDO28_RS07865 0ffeb9a170e01376a98c4a14b2127702 168 Pfam PF02082 Transcriptional regulator 1 83 1.1E-21 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS07865 0ffeb9a170e01376a98c4a14b2127702 168 Gene3D G3DSA:1.10.10.10 1 142 1.7E-32 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS07865 0ffeb9a170e01376a98c4a14b2127702 168 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 137 9.9E-25 T 06-07-2017 IPR000944 Transcription regulator Rrf2-type CDO28_RS07865 0ffeb9a170e01376a98c4a14b2127702 168 SUPERFAMILY SSF46785 4 140 6.48E-30 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS25335 51b34283a79f5fcfa06eca10391e83e1 366 Gene3D G3DSA:1.10.3470.10 38 363 7.0E-97 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25335 51b34283a79f5fcfa06eca10391e83e1 366 SUPERFAMILY SSF81345 36 360 1.57E-77 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS25335 51b34283a79f5fcfa06eca10391e83e1 366 Pfam PF01032 FecCD transport family 51 360 5.4E-87 T 06-07-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CDO28_RS08675 fb4590e31fb15d4e33c6fea409fa81ce 214 Gene3D G3DSA:3.90.950.10 3 210 3.9E-72 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS08675 fb4590e31fb15d4e33c6fea409fa81ce 214 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 9 210 1.6E-46 T 06-07-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 CDO28_RS08675 fb4590e31fb15d4e33c6fea409fa81ce 214 SUPERFAMILY SSF52972 5 211 2.46E-61 T 06-07-2017 IPR029001 Inosine triphosphate pyrophosphatase-like CDO28_RS08675 fb4590e31fb15d4e33c6fea409fa81ce 214 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 7 213 44.851 T 06-07-2017 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 CDO28_RS08675 fb4590e31fb15d4e33c6fea409fa81ce 214 Pfam PF01725 Ham1 family 9 209 6.0E-48 T 06-07-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 CDO28_RS16100 5bd06b607d4ec22565dc868d89b0af23 351 SMART SM01007 9 198 3.3E-32 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16100 5bd06b607d4ec22565dc868d89b0af23 351 SUPERFAMILY SSF53639 14 190 4.71E-22 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16100 5bd06b607d4ec22565dc868d89b0af23 351 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 15 192 2.8E-21 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS16100 5bd06b607d4ec22565dc868d89b0af23 351 Gene3D G3DSA:3.40.225.10 16 193 1.4E-23 T 06-07-2017 IPR001303 Class II aldolase/adducin N-terminal CDO28_RS19220 b37826ad98ff514084f0e071d1b792a7 279 Pfam PF17124 ThiJ/PfpI family-like 44 188 7.9E-14 T 06-07-2017 IPR032633 ThiJ/PfpI family-like CDO28_RS19220 b37826ad98ff514084f0e071d1b792a7 279 SUPERFAMILY SSF52317 24 278 4.91E-54 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS19220 b37826ad98ff514084f0e071d1b792a7 279 Gene3D G3DSA:3.40.50.880 19 279 2.0E-79 T 06-07-2017 IPR029062 Class I glutamine amidotransferase-like CDO28_RS00625 b51d493535cf337accb495857ac341a1 130 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 107 9.3E-19 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS00625 b51d493535cf337accb495857ac341a1 130 Gene3D G3DSA:2.60.300.12 5 100 5.0E-33 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS00625 b51d493535cf337accb495857ac341a1 130 SUPERFAMILY SSF89360 5 100 4.71E-27 T 06-07-2017 IPR000361 FeS cluster biogenesis CDO28_RS00625 b51d493535cf337accb495857ac341a1 130 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 4 111 1.7E-53 T 06-07-2017 IPR011298 FeS assembly scaffold SufA GO:0016226 CDO28_RS00625 b51d493535cf337accb495857ac341a1 130 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 109 8.5E-34 T 06-07-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 CDO28_RS34125 75d51580efb52e522f5dce6c7edd56d8 1261 Gene3D G3DSA:2.40.160.60 787 916 8.5E-4 T 06-07-2017 CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 296 2.9E-12 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 SUPERFAMILY SSF111369 56 303 1.57E-79 T 06-07-2017 CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 Pfam PF00529 HlyD membrane-fusion protein of T1SS 168 363 2.8E-9 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 Gene3D G3DSA:2.40.50.100 68 101 7.1E-23 T 06-07-2017 CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 Gene3D G3DSA:2.40.50.100 176 211 7.1E-23 T 06-07-2017 CDO28_RS09640 26d174770293e42a7386b27d5e2f0553 407 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 378 1.5E-87 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS22885 05f012d01acc831c7bcf48744ce44f97 346 SUPERFAMILY SSF51679 1 344 1.09E-76 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS22885 05f012d01acc831c7bcf48744ce44f97 346 Pfam PF00296 Luciferase-like monooxygenase 1 314 3.7E-51 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS22885 05f012d01acc831c7bcf48744ce44f97 346 Gene3D G3DSA:3.20.20.30 1 345 3.4E-84 T 06-07-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDO28_RS05620 b422fc4aa1d8b1d809bb1c07e137fa35 490 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 5 459 1.3E-128 T 06-07-2017 IPR003846 Uncharacterised protein family UPF0061 CDO28_RS05620 b422fc4aa1d8b1d809bb1c07e137fa35 490 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 2 476 48.494 T 06-07-2017 IPR003846 Uncharacterised protein family UPF0061 CDO28_RS25090 0e4e71c1446180cbf7f1d5182fb009e3 164 Pfam PF06897 Protein of unknown function (DUF1269) 60 158 9.3E-38 T 06-07-2017 IPR009200 Protein of unknown function DUF1269, membrane associated CDO28_RS01015 e2ae4efc28c6d299c9bf2d1a6141ac02 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 280 8.6E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 Gene3D G3DSA:3.40.190.10 122 222 1.9E-16 T 06-07-2017 CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 270 8.2E-48 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 SMART SM00062 35 271 5.0E-33 T 06-07-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 SUPERFAMILY SSF53850 8 271 5.69E-51 T 06-07-2017 CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 Gene3D G3DSA:3.40.190.10 34 121 4.7E-32 T 06-07-2017 CDO28_RS12285 a6ed89211a1bb51118d355d28d8ab17a 275 Gene3D G3DSA:3.40.190.10 230 273 4.7E-32 T 06-07-2017 CDO28_RS33835 8fe8d03f904bebca52a15439cb1b991b 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 306 1.3E-46 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS25995 5d668d99eaf5082c232be404c14d6126 82 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 6 63 3.0E-12 T 06-07-2017 IPR005064 Bordetella uptake gene GO:0030288 CDO28_RS12995 8c22d52f9ee849561b3ae2cb761e6464 293 SUPERFAMILY SSF53187 10 282 3.77E-87 T 06-07-2017 CDO28_RS12995 8c22d52f9ee849561b3ae2cb761e6464 293 Pfam PF05013 N-formylglutamate amidohydrolase 21 251 1.4E-71 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS12995 8c22d52f9ee849561b3ae2cb761e6464 293 Gene3D G3DSA:3.40.630.40 10 283 4.8E-100 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS12820 ccf05dfae85b75d8e6c014b5d540c1f4 157 Pfam PF06186 Protein of unknown function (DUF992) 13 153 1.4E-46 T 06-07-2017 IPR009333 Protein of unknown function DUF992 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 PRINTS PR00169 Potassium channel signature 89 109 2.9E-7 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 PRINTS PR00169 Potassium channel signature 175 197 2.9E-7 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 PRINTS PR00169 Potassium channel signature 63 86 2.9E-7 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 PRINTS PR00169 Potassium channel signature 204 230 2.9E-7 T 06-07-2017 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 Gene3D G3DSA:1.10.287.70 34 227 8.6E-21 T 06-07-2017 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 SUPERFAMILY SSF81324 26 222 1.57E-26 T 06-07-2017 CDO28_RS32390 ff9c415486cef77ce3e7b69c61351222 265 Pfam PF07885 Ion channel 156 227 3.3E-11 T 06-07-2017 IPR013099 Potassium channel domain CDO28_RS08815 eb3517cdad818a95743cc1f239052a6b 327 Gene3D G3DSA:3.40.50.720 1 292 2.0E-38 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08815 eb3517cdad818a95743cc1f239052a6b 327 SUPERFAMILY SSF51735 1 292 7.55E-53 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS08815 eb3517cdad818a95743cc1f239052a6b 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 189 3.1E-25 T 06-07-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 CDO28_RS02555 2ea81d6ce3c6bed99829f7ca71da74c3 69 Gene3D G3DSA:3.40.1620.10 7 34 6.6E-4 T 06-07-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDO28_RS02715 227156d218526e45accd3f143a247b14 215 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.6E-9 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 CDO28_RS02715 227156d218526e45accd3f143a247b14 215 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.6E-9 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 CDO28_RS02715 227156d218526e45accd3f143a247b14 215 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.6E-9 T 06-07-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 CDO28_RS02715 227156d218526e45accd3f143a247b14 215 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 2.1E-30 T 06-07-2017 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CDO28_RS02715 227156d218526e45accd3f143a247b14 215 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 171 18.098 T 06-07-2017 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CDO28_RS02715 227156d218526e45accd3f143a247b14 215 Pfam PF02416 mttA/Hcf106 family 4 34 3.3E-5 T 06-07-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CDO28_RS21750 fd217bc22c95f347282932a5fa3409ca 120 Pfam PF03779 SPW repeat 13 59 7.7E-14 T 06-07-2017 IPR005530 SPW repeat CDO28_RS21750 fd217bc22c95f347282932a5fa3409ca 120 Pfam PF03779 SPW repeat 65 110 5.6E-16 T 06-07-2017 IPR005530 SPW repeat CDO28_RS18685 82727884e1a1c1a2ae848c15770d32fc 137 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 83 94 - T 06-07-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 CDO28_RS18685 82727884e1a1c1a2ae848c15770d32fc 137 Pfam PF01219 Prokaryotic diacylglycerol kinase 31 129 3.7E-22 T 06-07-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 CDO28_RS18685 82727884e1a1c1a2ae848c15770d32fc 137 Gene3D G3DSA:1.10.3830.10 18 131 2.8E-28 T 06-07-2017 CDO28_RS32310 c756ce86e6b55192aaf2e24a8cc40c91 384 Gene3D G3DSA:2.40.50.100 175 207 3.4E-15 T 06-07-2017 CDO28_RS32310 c756ce86e6b55192aaf2e24a8cc40c91 384 Gene3D G3DSA:2.40.50.100 70 100 3.4E-15 T 06-07-2017 CDO28_RS32310 c756ce86e6b55192aaf2e24a8cc40c91 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 275 1.2E-20 T 06-07-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDO28_RS32310 c756ce86e6b55192aaf2e24a8cc40c91 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 362 2.6E-70 T 06-07-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 CDO28_RS32310 c756ce86e6b55192aaf2e24a8cc40c91 384 SUPERFAMILY SSF111369 57 276 6.67E-25 T 06-07-2017 CDO28_RS01180 65a6c96415e682ad3eab7631faee884f 165 SUPERFAMILY SSF53271 7 151 8.52E-35 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS01180 65a6c96415e682ad3eab7631faee884f 165 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 4 163 42.139 T 06-07-2017 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 CDO28_RS01180 65a6c96415e682ad3eab7631faee884f 165 Pfam PF00156 Phosphoribosyl transferase domain 12 153 2.5E-17 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS01180 65a6c96415e682ad3eab7631faee884f 165 Gene3D G3DSA:3.40.50.2020 9 158 1.5E-45 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS26860 8406bb7714a8605136dd7ec1b0328d00 129 Pfam PF01042 Endoribonuclease L-PSP 19 124 1.3E-26 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS26860 8406bb7714a8605136dd7ec1b0328d00 129 SUPERFAMILY SSF55298 5 126 3.3E-36 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS26860 8406bb7714a8605136dd7ec1b0328d00 129 Gene3D G3DSA:3.30.1330.40 12 127 7.0E-36 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS17470 b8c8b95f3432972fb9fe0f4cf0d5eab2 52 Pfam PF08085 Entericidin EcnA/B family 24 43 3.0E-5 T 06-07-2017 IPR012556 Entericidin A/B GO:0009636|GO:0016020 CDO28_RS29590 418ea85cfe3ce1d19caf2c6d9a1901b3 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 294 2.0E-16 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29590 418ea85cfe3ce1d19caf2c6d9a1901b3 310 Gene3D G3DSA:1.10.3720.10 71 300 1.6E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS29590 418ea85cfe3ce1d19caf2c6d9a1901b3 310 SUPERFAMILY SSF161098 66 292 1.18E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS34405 934c531b394cc02a32083f3a9ca89e4b 63 Pfam PF05717 IS66 Orf2 like protein 2 54 6.4E-17 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS29775 0800ae2ee9bdccb4b9cd3e8547d430de 161 Pfam PF09722 Protein of unknown function (DUF2384) 109 158 1.2E-15 T 06-07-2017 IPR024467 Domain of unknown function DUF2384 CDO28_RS29775 0800ae2ee9bdccb4b9cd3e8547d430de 161 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 27 161 3.0E-53 T 06-07-2017 IPR011979 Conserved hypothetical protein CHP02293 CDO28_RS33015 cf87d461a147e3a700d23703869e6009 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 318 2.3E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS12765 6461668256484fefdd641587d60b590e 263 Gene3D G3DSA:3.40.50.10310 19 255 1.1E-69 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 CDO28_RS12765 6461668256484fefdd641587d60b590e 263 Pfam PF02633 Creatinine amidohydrolase 14 250 2.7E-55 T 06-07-2017 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 CDO28_RS12765 6461668256484fefdd641587d60b590e 263 SUPERFAMILY SSF102215 17 255 1.19E-70 T 06-07-2017 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167 CDO28_RS23700 9b51a88b9963bc41416d6fac9ab52984 461 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 257 436 5.0E-30 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS23700 9b51a88b9963bc41416d6fac9ab52984 461 Gene3D G3DSA:3.30.70.1230 259 440 1.8E-40 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS23700 9b51a88b9963bc41416d6fac9ab52984 461 SUPERFAMILY SSF55073 255 438 1.52E-51 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS23700 9b51a88b9963bc41416d6fac9ab52984 461 SMART SM00044 228 418 2.6E-24 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS29325 b280acfae6a50ac6adfaf988516084e7 210 Gene3D G3DSA:1.20.120.80 29 207 3.2E-50 T 06-07-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29325 b280acfae6a50ac6adfaf988516084e7 210 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 30 209 2.4E-82 T 06-07-2017 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 CDO28_RS29325 b280acfae6a50ac6adfaf988516084e7 210 Pfam PF00510 Cytochrome c oxidase subunit III 31 207 7.3E-16 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS29325 b280acfae6a50ac6adfaf988516084e7 210 SUPERFAMILY SSF81452 18 207 2.75E-57 T 06-07-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS32245 e867eee2215b6f77b4bee4917e706f20 303 SUPERFAMILY SSF56436 1 301 1.88E-91 T 06-07-2017 IPR016187 C-type lectin fold CDO28_RS32245 e867eee2215b6f77b4bee4917e706f20 303 Gene3D G3DSA:3.90.1580.10 1 302 1.0E-93 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 CDO28_RS32245 e867eee2215b6f77b4bee4917e706f20 303 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 300 8.9E-81 T 06-07-2017 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 CDO28_RS06465 6a74525ba4831386b1ab610c4614c4b1 306 Pfam PF05035 2-keto-3-deoxy-galactonokinase 11 298 2.4E-97 T 06-07-2017 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 CDO28_RS06465 6a74525ba4831386b1ab610c4614c4b1 306 SUPERFAMILY SSF53067 6 82 2.41E-6 T 06-07-2017 CDO28_RS06465 6a74525ba4831386b1ab610c4614c4b1 306 SUPERFAMILY SSF53067 124 296 2.41E-6 T 06-07-2017 CDO28_RS25630 1ef6b79b6c976edc6b01e9881f5fd4ea 307 Gene3D G3DSA:3.40.50.720 109 273 5.2E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25630 1ef6b79b6c976edc6b01e9881f5fd4ea 307 Gene3D G3DSA:3.40.50.720 10 108 2.1E-20 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25630 1ef6b79b6c976edc6b01e9881f5fd4ea 307 SUPERFAMILY SSF51735 94 273 5.46E-47 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS25630 1ef6b79b6c976edc6b01e9881f5fd4ea 307 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 101 272 5.0E-45 T 06-07-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDO28_RS09310 7f43e372d3202b94202185314eb2d021 212 Gene3D G3DSA:3.40.50.300 2 205 1.8E-60 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09310 7f43e372d3202b94202185314eb2d021 212 Pfam PF02224 Cytidylate kinase 5 196 1.5E-53 T 06-07-2017 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 CDO28_RS09310 7f43e372d3202b94202185314eb2d021 212 Hamap MF_00238 Cytidylate kinase [cmk]. 3 208 29.867 T 06-07-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 CDO28_RS09310 7f43e372d3202b94202185314eb2d021 212 SUPERFAMILY SSF52540 2 207 1.2E-39 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS09310 7f43e372d3202b94202185314eb2d021 212 TIGRFAM TIGR00017 cmk: cytidylate kinase 1 197 3.5E-51 T 06-07-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 CDO28_RS26845 1fea7caf9d5fb4806fb7383d0665111b 127 SUPERFAMILY SSF54593 8 124 5.77E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS26845 1fea7caf9d5fb4806fb7383d0665111b 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 121 1.8E-8 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS26845 1fea7caf9d5fb4806fb7383d0665111b 127 Gene3D G3DSA:3.10.180.10 8 124 1.7E-21 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS25220 9788ad198a4778f2e75e39ce8314d82f 297 Gene3D G3DSA:3.40.800.10 6 294 1.3E-45 T 06-07-2017 IPR023696 Ureohydrolase domain CDO28_RS25220 9788ad198a4778f2e75e39ce8314d82f 297 Pfam PF00491 Arginase family 67 290 7.9E-24 T 06-07-2017 IPR006035 Ureohydrolase GO:0046872 CDO28_RS25220 9788ad198a4778f2e75e39ce8314d82f 297 SUPERFAMILY SSF52768 5 293 3.06E-47 T 06-07-2017 CDO28_RS14035 84e872d6dbad668b5181df7e31b8ffdf 298 Gene3D G3DSA:3.40.50.150 91 263 1.8E-18 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14035 84e872d6dbad668b5181df7e31b8ffdf 298 SUPERFAMILY SSF53335 89 215 1.16E-13 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS14035 84e872d6dbad668b5181df7e31b8ffdf 298 Pfam PF08241 Methyltransferase domain 57 137 5.7E-5 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS22800 cdf2d3045f6e91a18afee76774dc774e 476 SUPERFAMILY SSF53335 284 415 1.34E-11 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS22800 cdf2d3045f6e91a18afee76774dc774e 476 Gene3D G3DSA:3.40.50.150 284 340 2.9E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS15440 839986996e97308efc4486258d31fc2f 101 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 18 95 2.4E-24 T 06-07-2017 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 CDO28_RS15440 839986996e97308efc4486258d31fc2f 101 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 8 95 21.889 T 06-07-2017 IPR022935 ATP-dependent Clp protease adaptor protein ClpS CDO28_RS15440 839986996e97308efc4486258d31fc2f 101 Gene3D G3DSA:3.30.1390.10 3 100 8.8E-33 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS15440 839986996e97308efc4486258d31fc2f 101 SUPERFAMILY SSF54736 15 99 1.67E-24 T 06-07-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDO28_RS31745 ba2c746aa23806beb5a8ae67e283dab8 398 Pfam PF11175 Protein of unknown function (DUF2961) 277 362 5.6E-29 T 06-07-2017 IPR021345 Protein of unknown function DUF2961 CDO28_RS31745 ba2c746aa23806beb5a8ae67e283dab8 398 Pfam PF11175 Protein of unknown function (DUF2961) 70 243 1.3E-51 T 06-07-2017 IPR021345 Protein of unknown function DUF2961 CDO28_RS11340 53f190f0fc8aaea9137c359a61beb521 268 SUPERFAMILY SSF56219 3 268 4.71E-68 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS11340 53f190f0fc8aaea9137c359a61beb521 268 Gene3D G3DSA:3.60.10.10 3 267 1.1E-68 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS11340 53f190f0fc8aaea9137c359a61beb521 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 259 4.5E-25 T 06-07-2017 IPR005135 Endonuclease/exonuclease/phosphatase CDO28_RS11340 53f190f0fc8aaea9137c359a61beb521 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 266 2.0E-51 T 06-07-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CDO28_RS11340 53f190f0fc8aaea9137c359a61beb521 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 06-07-2017 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 CDO28_RS07950 b850fd3012ad43e2e1a733052dd28c48 270 Pfam PF04116 Fatty acid hydroxylase superfamily 96 232 8.0E-27 T 06-07-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 CDO28_RS26065 2e7d28546f66966e3db16fc8e0b529ed 175 Pfam PF14232 Domain of unknown function (DUF4334) 117 171 1.0E-22 T 06-07-2017 IPR025568 Domain of unknown function DUF4334 CDO28_RS26065 2e7d28546f66966e3db16fc8e0b529ed 175 Pfam PF14231 GXWXG protein 17 70 5.3E-20 T 06-07-2017 IPR025951 GXWXG domain CDO28_RS33035 d7f70662146acf43932f27e23d1b06ee 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 303 9.7E-44 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS22275 2598161b91e7885e677e49005008b823 230 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 48 203 1.1E-31 T 06-07-2017 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 CDO28_RS18310 6303a74efe9565ac8c8884eb6eb040dc 104 Pfam PF05284 Protein of unknown function (DUF736) 3 99 1.7E-31 T 06-07-2017 IPR007948 Protein of unknown function DUF736 CDO28_RS26095 d1b5e032ca7c8343fd2dbc8ffeb33c67 386 SUPERFAMILY SSF89796 4 385 2.62E-108 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS26095 d1b5e032ca7c8343fd2dbc8ffeb33c67 386 Gene3D G3DSA:3.30.1540.10 241 309 1.8E-9 T 06-07-2017 CDO28_RS26095 d1b5e032ca7c8343fd2dbc8ffeb33c67 386 Pfam PF02515 CoA-transferase family III 9 376 1.6E-107 T 06-07-2017 IPR003673 CoA-transferase family III GO:0003824 CDO28_RS26095 d1b5e032ca7c8343fd2dbc8ffeb33c67 386 Gene3D G3DSA:3.40.50.10540 310 385 7.0E-95 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS26095 d1b5e032ca7c8343fd2dbc8ffeb33c67 386 Gene3D G3DSA:3.40.50.10540 6 222 7.0E-95 T 06-07-2017 IPR023606 CoA-transferase family III domain CDO28_RS20490 06f9264dc7de9a9c80ff847c223f9659 196 SMART SM01006 27 74 1.1E-8 T 06-07-2017 IPR019432 Siderophore biosynthesis protein, conserved domain CDO28_RS20490 06f9264dc7de9a9c80ff847c223f9659 196 Pfam PF13523 Acetyltransferase (GNAT) domain 32 175 4.3E-48 T 06-07-2017 CDO28_RS20490 06f9264dc7de9a9c80ff847c223f9659 196 Gene3D G3DSA:3.40.630.30 10 194 1.1E-62 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS20490 06f9264dc7de9a9c80ff847c223f9659 196 SUPERFAMILY SSF55729 10 189 8.24E-53 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS10015 6cb99af5db64cdfcb26dd1c72b60f21d 427 SUPERFAMILY SSF53850 29 424 2.63E-53 T 06-07-2017 CDO28_RS10015 6cb99af5db64cdfcb26dd1c72b60f21d 427 Gene3D G3DSA:3.40.190.10 147 320 1.2E-19 T 06-07-2017 CDO28_RS10015 6cb99af5db64cdfcb26dd1c72b60f21d 427 Gene3D G3DSA:3.40.190.10 321 346 4.8E-28 T 06-07-2017 CDO28_RS10015 6cb99af5db64cdfcb26dd1c72b60f21d 427 Gene3D G3DSA:3.40.190.10 31 144 4.8E-28 T 06-07-2017 CDO28_RS10015 6cb99af5db64cdfcb26dd1c72b60f21d 427 Pfam PF13416 Bacterial extracellular solute-binding protein 54 338 4.1E-25 T 06-07-2017 CDO28_RS28005 156c323645b3a7cb7413c3d5d93ab0bd 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 320 8.9E-42 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS12575 93bfe130b3654fcbe79fb0c83d01395f 317 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 306 2.8E-67 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS12575 93bfe130b3654fcbe79fb0c83d01395f 317 Gene3D G3DSA:3.90.245.10 1 314 3.5E-94 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS12575 93bfe130b3654fcbe79fb0c83d01395f 317 SUPERFAMILY SSF53590 1 313 3.79E-88 T 06-07-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CDO28_RS17850 438404a284f319c6b0e7a4fd91f28dc1 250 PRINTS PR01746 Dense granule Gra6 protein signature 51 70 3.6E-5 T 06-07-2017 IPR008119 Dense granule Gra6 protein CDO28_RS17850 438404a284f319c6b0e7a4fd91f28dc1 250 PRINTS PR01746 Dense granule Gra6 protein signature 147 163 3.6E-5 T 06-07-2017 IPR008119 Dense granule Gra6 protein CDO28_RS12960 c421b00f2d6c963601a322e0306296d5 113 Gene3D G3DSA:1.10.760.10 9 111 5.6E-14 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS12960 c421b00f2d6c963601a322e0306296d5 113 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 35 105 3.2E-10 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS12960 c421b00f2d6c963601a322e0306296d5 113 SUPERFAMILY SSF46626 14 110 1.51E-13 T 06-07-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 CDO28_RS34465 0b9566abb1cf4f5bd3c5ccabd9925206 217 Pfam PF04991 LicD family 31 123 4.2E-17 T 06-07-2017 IPR007074 LicD family CDO28_RS21480 22d2dbec805ac8b35ad00ee4af6cc12a 321 Gene3D G3DSA:3.40.50.2300 155 315 3.3E-39 T 06-07-2017 CDO28_RS21480 22d2dbec805ac8b35ad00ee4af6cc12a 321 Gene3D G3DSA:3.40.50.2300 26 154 3.4E-19 T 06-07-2017 CDO28_RS21480 22d2dbec805ac8b35ad00ee4af6cc12a 321 Pfam PF13407 Periplasmic binding protein domain 34 292 5.5E-42 T 06-07-2017 IPR025997 Periplasmic binding protein CDO28_RS21480 22d2dbec805ac8b35ad00ee4af6cc12a 321 SUPERFAMILY SSF53822 11 314 1.68E-56 T 06-07-2017 IPR028082 Periplasmic binding protein-like I CDO28_RS11225 0176335585eafe2ca9dc5ac9b1c7ce63 245 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 27 240 7.1E-67 T 06-07-2017 CDO28_RS27865 e2ec7ac53c00537d1a2ce0918545aa85 285 Pfam PF05013 N-formylglutamate amidohydrolase 37 248 7.8E-29 T 06-07-2017 IPR007709 N-formylglutamate amidohydrolase CDO28_RS27865 e2ec7ac53c00537d1a2ce0918545aa85 285 SUPERFAMILY SSF53187 26 268 1.07E-21 T 06-07-2017 CDO28_RS27865 e2ec7ac53c00537d1a2ce0918545aa85 285 Gene3D G3DSA:3.40.630.40 28 270 1.7E-18 T 06-07-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CDO28_RS23500 a241846a3f9e51942cc14d673335d919 475 Pfam PF13551 Winged helix-turn helix 22 74 3.8E-9 T 06-07-2017 CDO28_RS23500 a241846a3f9e51942cc14d673335d919 475 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 432 461 3.0E-6 T 06-07-2017 CDO28_RS23500 a241846a3f9e51942cc14d673335d919 475 Gene3D G3DSA:3.30.420.10 137 295 1.3E-18 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS23500 a241846a3f9e51942cc14d673335d919 475 SUPERFAMILY SSF53098 137 295 2.88E-17 T 06-07-2017 IPR012337 Ribonuclease H-like domain GO:0003676 CDO28_RS23500 a241846a3f9e51942cc14d673335d919 475 SUPERFAMILY SSF46689 13 119 1.97E-12 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS04090 890e5705b238087f1f8b09126eab5588 347 Pfam PF00146 NADH dehydrogenase 20 337 7.9E-122 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04090 890e5705b238087f1f8b09126eab5588 347 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 225 238 - T 06-07-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS04090 890e5705b238087f1f8b09126eab5588 347 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 344 24.374 T 06-07-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS20800 e394832a872c0c06d286212d72a36430 88 Pfam PF10041 Uncharacterized conserved protein (DUF2277) 1 78 3.3E-38 T 06-07-2017 IPR018735 Protein of unknown function DUF2277 CDO28_RS25720 7ad45741474eb7667c50a771848ca4b5 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 307 1.4E-82 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS25720 7ad45741474eb7667c50a771848ca4b5 323 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 45 58 - T 06-07-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CDO28_RS25720 7ad45741474eb7667c50a771848ca4b5 323 Gene3D G3DSA:3.40.50.1100 73 320 5.5E-73 T 06-07-2017 CDO28_RS25720 7ad45741474eb7667c50a771848ca4b5 323 SUPERFAMILY SSF53686 6 313 1.83E-94 T 06-07-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDO28_RS14980 38ebdd9b282f0e29aa413cf7569f3e55 317 Gene3D G3DSA:3.40.50.1360 59 315 5.1E-72 T 06-07-2017 CDO28_RS14980 38ebdd9b282f0e29aa413cf7569f3e55 317 Pfam PF04198 Putative sugar-binding domain 61 316 3.7E-73 T 06-07-2017 IPR007324 Sugar-binding domain, putative GO:0030246 CDO28_RS14980 38ebdd9b282f0e29aa413cf7569f3e55 317 SUPERFAMILY SSF88659 20 50 7.29E-5 T 06-07-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDO28_RS14980 38ebdd9b282f0e29aa413cf7569f3e55 317 SUPERFAMILY SSF100950 61 316 3.45E-64 T 06-07-2017 CDO28_RS09155 a15081fc2d4837ca5ce7eb61efbf0c33 206 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 38 196 9.9E-66 T 06-07-2017 IPR010319 Transglutaminase-like cysteine peptidase, predicted CDO28_RS10800 c84a195986e98dd2c6f0c68b35f6fc5e 235 Pfam PF01569 PAP2 superfamily 92 205 1.7E-25 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDO28_RS10800 c84a195986e98dd2c6f0c68b35f6fc5e 235 Gene3D G3DSA:1.20.144.10 23 211 3.3E-36 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDO28_RS10800 c84a195986e98dd2c6f0c68b35f6fc5e 235 SMART SM00014 88 202 1.2E-18 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDO28_RS10800 c84a195986e98dd2c6f0c68b35f6fc5e 235 SUPERFAMILY SSF48317 9 211 4.19E-41 T 06-07-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDO28_RS05420 33ed031625a443dc1defcc1ad12a758d 151 Pfam PF03918 Cytochrome C biogenesis protein 8 149 9.8E-53 T 06-07-2017 IPR005616 CcmH/CycL/Ccl2/NrfF family CDO28_RS24075 2d6520394db8050d60f1db71969678e1 95 Pfam PF03927 NapD protein 8 81 2.3E-23 T 06-07-2017 IPR005623 Chaperone NapD, nitrate reductase assembly CDO28_RS08530 296e52c19042f9a80223976e0a85d503 218 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 203 1.6E-51 T 06-07-2017 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 CDO28_RS08530 296e52c19042f9a80223976e0a85d503 218 Pfam PF00814 Glycoprotease family 34 130 2.8E-30 T 06-07-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CDO28_RS08530 296e52c19042f9a80223976e0a85d503 218 SUPERFAMILY SSF53067 112 189 9.32E-5 T 06-07-2017 CDO28_RS08530 296e52c19042f9a80223976e0a85d503 218 SUPERFAMILY SSF53067 1 106 2.81E-28 T 06-07-2017 CDO28_RS08530 296e52c19042f9a80223976e0a85d503 218 Gene3D G3DSA:3.30.420.40 1 134 6.6E-39 T 06-07-2017 CDO28_RS22005 4da4db84ff59e36514dbdd9247dd274b 750 SUPERFAMILY SSF48452 499 700 5.69E-21 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS22005 4da4db84ff59e36514dbdd9247dd274b 750 Gene3D G3DSA:1.25.40.10 495 700 2.5E-23 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS06380 da6d7ee38eb40f27c62bbddadf143e84 183 SUPERFAMILY SSF53448 1 102 7.43E-8 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS13310 1fad86115214015ff3e728e24c3b4bef 125 Pfam PF05164 Cell division protein ZapA 4 109 3.3E-21 T 06-07-2017 IPR007838 Cell division protein ZapA-like CDO28_RS13310 1fad86115214015ff3e728e24c3b4bef 125 SUPERFAMILY SSF102829 3 90 2.35E-22 T 06-07-2017 IPR007838 Cell division protein ZapA-like CDO28_RS09330 58aa8efdc707e236459892203cdf85c7 262 Pfam PF02698 DUF218 domain 80 245 5.0E-24 T 06-07-2017 IPR003848 Domain of unknown function DUF218 CDO28_RS09330 58aa8efdc707e236459892203cdf85c7 262 Gene3D G3DSA:3.40.50.620 73 215 1.5E-24 T 06-07-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDO28_RS03235 e0946d9ec891b07dc2ac37a0ce42fdb7 377 SUPERFAMILY SSF48371 3 138 1.78E-5 T 06-07-2017 IPR016024 Armadillo-type fold GO:0005488 CDO28_RS03235 e0946d9ec891b07dc2ac37a0ce42fdb7 377 PIRSF PIRSF035865 1 377 6.0E-163 T 06-07-2017 IPR014598 Uncharacterised conserved protein UCP035865 CDO28_RS03235 e0946d9ec891b07dc2ac37a0ce42fdb7 377 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 86 342 1.1E-68 T 06-07-2017 IPR019285 Protein of unknown function DUF2336 CDO28_RS28190 e55b371f3249aec7f6f9d4c112818879 266 Gene3D G3DSA:3.40.1190.20 4 261 4.0E-102 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS28190 e55b371f3249aec7f6f9d4c112818879 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 260 6.3E-98 T 06-07-2017 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDO28_RS28190 e55b371f3249aec7f6f9d4c112818879 266 SUPERFAMILY SSF53613 3 265 2.34E-82 T 06-07-2017 IPR029056 Ribokinase-like CDO28_RS28190 e55b371f3249aec7f6f9d4c112818879 266 Pfam PF08543 Phosphomethylpyrimidine kinase 12 258 2.1E-95 T 06-07-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 CDO28_RS09900 75ffb2393a8898719ecdaa2a50caacae 60 Pfam PF04964 Flp/Fap pilin component 9 50 2.6E-20 T 06-07-2017 IPR007047 Flp/Fap pilin component CDO28_RS24675 b85a589ad8ca1f7554c70b374584532b 304 SUPERFAMILY SSF55961 93 294 1.59E-24 T 06-07-2017 CDO28_RS24305 61f9f4ab183430025a840955630ae941 73 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 21 64 7.2E-5 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS09670 047f7c0857851b354af3873dbe0e26d1 214 Pfam PF01865 Protein of unknown function DUF47 4 212 2.3E-72 T 06-07-2017 IPR018445 Putative phosphate transport regulator CDO28_RS09670 047f7c0857851b354af3873dbe0e26d1 214 SUPERFAMILY SSF109755 32 207 5.06E-5 T 06-07-2017 CDO28_RS34070 5905837074be6de6a77d1a0b6a664228 237 SUPERFAMILY SSF52540 61 210 1.25E-14 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34070 5905837074be6de6a77d1a0b6a664228 237 Gene3D G3DSA:3.40.50.300 57 215 4.5E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS34070 5905837074be6de6a77d1a0b6a664228 237 Pfam PF06745 KaiC 60 135 7.3E-8 T 06-07-2017 IPR014774 KaiC-like domain CDO28_RS08845 f8c76783ff01339c6603c88fa5e6ad92 304 Pfam PF00892 EamA-like transporter family 14 139 2.2E-9 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08845 f8c76783ff01339c6603c88fa5e6ad92 304 Pfam PF00892 EamA-like transporter family 154 284 1.1E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS08845 f8c76783ff01339c6603c88fa5e6ad92 304 SUPERFAMILY SSF103481 39 142 7.85E-13 T 06-07-2017 CDO28_RS08845 f8c76783ff01339c6603c88fa5e6ad92 304 SUPERFAMILY SSF103481 189 287 2.22E-10 T 06-07-2017 CDO28_RS23935 e4749d860c1814e5bd15ce86a4b28079 194 SUPERFAMILY SSF53335 7 164 1.72E-22 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS23935 e4749d860c1814e5bd15ce86a4b28079 194 Pfam PF13489 Methyltransferase domain 30 152 8.7E-9 T 06-07-2017 CDO28_RS23935 e4749d860c1814e5bd15ce86a4b28079 194 Gene3D G3DSA:3.40.50.150 8 164 1.2E-19 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS15090 0afd6c2b54cfeae34fbee9676057412e 137 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 38 129 6.0E-25 T 06-07-2017 IPR016772 Uncharacterised conserved protein UCP020408 CDO28_RS01145 5a619bd2f8ba92ad3a8a6628e3a87b12 221 SUPERFAMILY SSF52833 5 213 8.81E-50 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS01145 5a619bd2f8ba92ad3a8a6628e3a87b12 221 Pfam PF01323 DSBA-like thioredoxin domain 6 208 3.4E-47 T 06-07-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 CDO28_RS01145 5a619bd2f8ba92ad3a8a6628e3a87b12 221 Gene3D G3DSA:3.40.30.10 2 211 7.6E-51 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS34035 d0aa0d8050dc47e12a3ca13679f1e839 425 Pfam PF03428 Replication protein C N-terminal domain 13 184 6.8E-45 T 06-07-2017 IPR005090 Replication protein C CDO28_RS34035 d0aa0d8050dc47e12a3ca13679f1e839 425 Pfam PF11800 Replication protein C C-terminal region 217 419 3.8E-38 T 06-07-2017 IPR021760 Replication protein-C C-terminal CDO28_RS34035 d0aa0d8050dc47e12a3ca13679f1e839 425 SUPERFAMILY SSF46785 83 131 5.46E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS06535 41ac2b57ad29d5a35a4e2156c8151819 236 SUPERFAMILY SSF56784 4 234 7.07E-40 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06535 41ac2b57ad29d5a35a4e2156c8151819 236 Gene3D G3DSA:3.40.50.1000 105 235 1.3E-31 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06535 41ac2b57ad29d5a35a4e2156c8151819 236 Gene3D G3DSA:3.40.50.1000 7 21 1.3E-31 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS06535 41ac2b57ad29d5a35a4e2156c8151819 236 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 120 199 9.1E-13 T 06-07-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CDO28_RS06535 41ac2b57ad29d5a35a4e2156c8151819 236 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 202 4.9E-20 T 06-07-2017 IPR023214 HAD-like domain CDO28_RS29340 087d12800b849676aa69621f82f7639c 176 Pfam PF06186 Protein of unknown function (DUF992) 38 172 2.8E-50 T 06-07-2017 IPR009333 Protein of unknown function DUF992 CDO28_RS32450 02ddfd3c42dc104b6a5582c6b2eaf5c8 155 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 19 144 6.4E-24 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS18505 a4de4ee47af18011e7809ede28d69872 129 Pfam PF09722 Protein of unknown function (DUF2384) 78 129 1.4E-10 T 06-07-2017 IPR024467 Domain of unknown function DUF2384 CDO28_RS18505 a4de4ee47af18011e7809ede28d69872 129 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 21 125 4.0E-39 T 06-07-2017 IPR020358 Uncharacterised protein family Y4oB CDO28_RS30930 b3f2ac57c970bc51c992575a3a12a97f 69 SUPERFAMILY SSF89807 5 68 1.57E-26 T 06-07-2017 IPR009923 Dodecin CDO28_RS30930 b3f2ac57c970bc51c992575a3a12a97f 69 Gene3D G3DSA:3.30.1660.10 2 69 2.1E-35 T 06-07-2017 IPR025543 Dodecin-like CDO28_RS30930 b3f2ac57c970bc51c992575a3a12a97f 69 Pfam PF07311 Dodecin 5 68 1.6E-30 T 06-07-2017 IPR009923 Dodecin CDO28_RS11230 2e3e5b4e663a9d1ee77dd13a5ab7cdb4 863 Pfam PF02687 FtsX-like permease family 284 401 7.8E-10 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 CDO28_RS11230 2e3e5b4e663a9d1ee77dd13a5ab7cdb4 863 Pfam PF02687 FtsX-like permease family 743 852 6.0E-10 T 06-07-2017 IPR003838 ABC transporter permease protein domain GO:0016020 CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 SUPERFAMILY SSF46785 13 80 7.76E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 Gene3D G3DSA:1.10.10.10 9 81 2.0E-20 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 Gene3D G3DSA:3.30.450.40 86 254 1.5E-34 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 SMART SM00346 11 100 2.6E-12 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 SUPERFAMILY SSF55781 76 253 2.55E-34 T 06-07-2017 IPR029016 GAF domain-like CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 Pfam PF09339 IclR helix-turn-helix domain 13 62 1.5E-10 T 06-07-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDO28_RS26160 b77fbf16532062971e5fc9f7e4aed6fa 260 Pfam PF01614 Bacterial transcriptional regulator 131 251 4.8E-14 T 06-07-2017 IPR014757 Transcription regulator IclR, C-terminal CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.0E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.0E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.0E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 2.0E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 2.0E-13 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 Gene3D G3DSA:3.40.50.720 2 238 4.3E-50 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 Pfam PF00106 short chain dehydrogenase 1 198 3.1E-27 T 06-07-2017 IPR002347 Short-chain dehydrogenase/reductase SDR CDO28_RS23875 67588fddd2e4da4ab20fc993229e1414 281 SUPERFAMILY SSF51735 2 242 2.86E-52 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS29415 f3dbc8f6d87250efe436751762f43f4f 443 Pfam PF04932 O-Antigen ligase 215 357 1.0E-10 T 06-07-2017 IPR007016 O-antigen ligase-related CDO28_RS14660 52ba1f0bb5b875794e08dadacff2dc1a 62 Gene3D G3DSA:3.40.605.10 4 38 2.6E-4 T 06-07-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CDO28_RS23650 707763923aaa140d527e3ffb2b2096af 371 Gene3D G3DSA:3.60.21.10 145 315 7.6E-26 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS23650 707763923aaa140d527e3ffb2b2096af 371 SUPERFAMILY SSF56300 141 370 7.74E-35 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS23650 707763923aaa140d527e3ffb2b2096af 371 Pfam PF00149 Calcineurin-like phosphoesterase 146 311 2.5E-12 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS11605 fc6229004d265f19e020d6204039f351 73 Pfam PF13619 KTSC domain 11 69 1.4E-22 T 06-07-2017 IPR025309 KTSC domain CDO28_RS20370 f7720842a483935546036c54e1f0b3e0 270 SMART SM00287 23 85 6.1E-4 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS20370 f7720842a483935546036c54e1f0b3e0 270 Pfam PF08239 Bacterial SH3 domain 31 82 8.8E-12 T 06-07-2017 IPR003646 SH3-like domain, bacterial-type CDO28_RS03115 4f46919d04c6ada6df1498a07f020e76 149 Gene3D G3DSA:3.30.530.20 1 148 4.8E-49 T 06-07-2017 IPR023393 START-like domain CDO28_RS03115 4f46919d04c6ada6df1498a07f020e76 149 SUPERFAMILY SSF55961 1 148 4.17E-36 T 06-07-2017 CDO28_RS03115 4f46919d04c6ada6df1498a07f020e76 149 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 140 2.6E-30 T 06-07-2017 IPR005031 Coenzyme Q-binding protein COQ10, START domain CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 Gene3D G3DSA:1.20.58.100 442 509 1.5E-10 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 Pfam PF00890 FAD binding domain 19 129 6.7E-12 T 06-07-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 20 39 4.2E-11 T 06-07-2017 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 336 358 4.2E-11 T 06-07-2017 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 181 199 4.2E-11 T 06-07-2017 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 SUPERFAMILY SSF51905 12 233 2.45E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 SUPERFAMILY SSF51905 336 395 2.45E-39 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 SUPERFAMILY SSF46977 441 534 1.7E-16 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 Gene3D G3DSA:3.50.50.60 336 397 5.2E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 Gene3D G3DSA:3.50.50.60 16 269 5.2E-52 T 06-07-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 351 358 2.9E-7 T 06-07-2017 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 19 41 2.9E-7 T 06-07-2017 CDO28_RS14290 372fe82306843ac58fbfcf1b0b412da3 547 Pfam PF02910 Fumarate reductase flavoprotein C-term 471 514 6.6E-6 T 06-07-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDO28_RS23730 0c376a2636ced9273bf7c9b2278b1c82 136 SUPERFAMILY SSF50891 24 135 5.69E-14 T 06-07-2017 IPR029000 Cyclophilin-like domain CDO28_RS21620 2bfb10c4b939ec63c14d6dc005e0c1ab 178 Pfam PF06776 Invasion associated locus B (IalB) protein 42 172 6.4E-34 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS02410 203dcaf3f2710ece70f0c60d248859b7 267 Gene3D G3DSA:3.20.20.410 3 266 2.7E-76 T 06-07-2017 IPR002763 Protein of unknown function DUF72 CDO28_RS02410 203dcaf3f2710ece70f0c60d248859b7 267 Pfam PF01904 Protein of unknown function DUF72 24 264 2.6E-58 T 06-07-2017 IPR002763 Protein of unknown function DUF72 CDO28_RS02410 203dcaf3f2710ece70f0c60d248859b7 267 SUPERFAMILY SSF117396 6 266 1.57E-71 T 06-07-2017 IPR002763 Protein of unknown function DUF72 CDO28_RS08850 1c3e7eaf5ae6b55ecc2581d27569f2f5 210 PIRSF PIRSF006324 1 209 4.8E-43 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS08850 1c3e7eaf5ae6b55ecc2581d27569f2f5 210 Pfam PF01810 LysE type translocator 17 204 3.4E-26 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS19730 2a54a152222047f928c344e0f80d67e6 200 SUPERFAMILY SSF88723 43 178 5.89E-9 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS01380 3aab0b7e8f0a47b00fc7a7b99aed8358 297 Pfam PF07120 Protein of unknown function (DUF1376) 33 117 9.1E-18 T 06-07-2017 IPR010781 Protein of unknown function DUF1376 CDO28_RS07235 94d58becca368e42297f95b2643c5b0e 472 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 470 3.2E-104 T 06-07-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CDO28_RS07235 94d58becca368e42297f95b2643c5b0e 472 SUPERFAMILY SSF64518 71 271 4.84E-8 T 06-07-2017 CDO28_RS07235 94d58becca368e42297f95b2643c5b0e 472 SUPERFAMILY SSF64518 354 469 4.84E-8 T 06-07-2017 CDO28_RS07235 94d58becca368e42297f95b2643c5b0e 472 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 421 468 1.2E-7 T 06-07-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CDO28_RS08450 445144220735b1349cffdfea9e9c3797 401 Pfam PF02646 RmuC family 90 369 1.5E-57 T 06-07-2017 IPR003798 DNA recombination RmuC CDO28_RS31735 385e7b1b3d0c9a8518d64e157c509e88 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 301 1.6E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31735 385e7b1b3d0c9a8518d64e157c509e88 314 Gene3D G3DSA:1.10.3720.10 76 309 1.9E-58 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31735 385e7b1b3d0c9a8518d64e157c509e88 314 SUPERFAMILY SSF161098 72 299 1.57E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS09685 855dadf3458e365853aa2a54a03aec57 294 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 97 287 9.8E-66 T 06-07-2017 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding CDO28_RS21340 01f5b80b19e6e6ea75aecad700499af1 261 SUPERFAMILY SSF46689 72 144 2.41E-14 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS21340 01f5b80b19e6e6ea75aecad700499af1 261 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 129 5.4E-9 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS21340 01f5b80b19e6e6ea75aecad700499af1 261 Gene3D G3DSA:1.10.357.10 65 257 1.6E-23 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS15240 ad72a69966d2fc0f046b8ee9480cb361 134 Pfam PF04480 Protein of unknown function (DUF559) 7 112 1.3E-34 T 06-07-2017 IPR007569 Domain of unknown function DUF559 CDO28_RS15240 ad72a69966d2fc0f046b8ee9480cb361 134 SUPERFAMILY SSF52980 6 123 7.51E-21 T 06-07-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDO28_RS01215 b0600b6b0b3dbd9103425123edbe6b05 129 Pfam PF03795 YCII-related domain 1 113 1.3E-22 T 06-07-2017 IPR005545 YCII-related CDO28_RS01215 b0600b6b0b3dbd9103425123edbe6b05 129 Gene3D G3DSA:3.30.70.1060 1 112 5.4E-26 T 06-07-2017 CDO28_RS01215 b0600b6b0b3dbd9103425123edbe6b05 129 SUPERFAMILY SSF54909 1 113 2.25E-24 T 06-07-2017 IPR011008 Dimeric alpha-beta barrel CDO28_RS06575 1d8db03df83f2b59e5bedbe84eec710d 299 Gene3D G3DSA:3.40.1090.10 21 193 5.4E-12 T 06-07-2017 CDO28_RS06575 1d8db03df83f2b59e5bedbe84eec710d 299 Pfam PF01734 Patatin-like phospholipase 27 198 1.1E-25 T 06-07-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 CDO28_RS06575 1d8db03df83f2b59e5bedbe84eec710d 299 SUPERFAMILY SSF52151 22 291 3.4E-47 T 06-07-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CDO28_RS11965 8c9c0942ff14dfcfc209976dd835df5c 139 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 51 139 8.8E-35 T 06-07-2017 IPR018678 Protein of unknown function DUF2160, transmembrane CDO28_RS28895 02c23507d45190c62707fb2cc0e617b8 289 Gene3D G3DSA:3.40.50.150 33 270 2.4E-39 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28895 02c23507d45190c62707fb2cc0e617b8 289 Pfam PF08241 Methyltransferase domain 64 158 2.2E-23 T 06-07-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 CDO28_RS28895 02c23507d45190c62707fb2cc0e617b8 289 SUPERFAMILY SSF53335 33 243 3.56E-40 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS30940 77879ee57966d1956bd94ae1fb4798c7 495 Pfam PF01740 STAS domain 398 486 1.2E-8 T 06-07-2017 IPR002645 STAS domain CDO28_RS30940 77879ee57966d1956bd94ae1fb4798c7 495 SUPERFAMILY SSF52091 397 484 4.51E-12 T 06-07-2017 IPR002645 STAS domain CDO28_RS30940 77879ee57966d1956bd94ae1fb4798c7 495 Pfam PF00916 Sulfate permease family 167 345 2.4E-27 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CDO28_RS30940 77879ee57966d1956bd94ae1fb4798c7 495 Pfam PF00916 Sulfate permease family 17 147 5.0E-26 T 06-07-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CDO28_RS30940 77879ee57966d1956bd94ae1fb4798c7 495 Gene3D G3DSA:3.30.750.24 396 484 2.6E-8 T 06-07-2017 IPR002645 STAS domain CDO28_RS22635 317c37700276442f40e8d87053a6bd43 176 Pfam PF07987 Domain of unkown function (DUF1775) 22 169 1.1E-45 T 06-07-2017 IPR012533 GLE1, N-terminal, bacteria CDO28_RS20660 326d5e8595d98387eac1cbf433e90220 401 Pfam PF03428 Replication protein C N-terminal domain 13 185 6.0E-73 T 06-07-2017 IPR005090 Replication protein C CDO28_RS20660 326d5e8595d98387eac1cbf433e90220 401 SUPERFAMILY SSF46785 92 165 3.52E-5 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS20660 326d5e8595d98387eac1cbf433e90220 401 Pfam PF11800 Replication protein C C-terminal region 194 393 7.5E-80 T 06-07-2017 IPR021760 Replication protein-C C-terminal CDO28_RS20660 326d5e8595d98387eac1cbf433e90220 401 Gene3D G3DSA:1.10.10.10 93 123 1.2E-4 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS30415 cd3fea6d3b1e25da49dbc246393d5d73 92 Pfam PF07704 Rv0623-like transcription factor 9 87 3.6E-18 T 06-07-2017 IPR011660 Rv0623-like transcription factor CDO28_RS20250 51ddc77e422a24ec1abc96070a0bf9c8 125 SUPERFAMILY SSF88723 1 119 1.12E-17 T 06-07-2017 IPR029060 PIN domain-like CDO28_RS20250 51ddc77e422a24ec1abc96070a0bf9c8 125 Pfam PF01850 PIN domain 3 119 2.8E-11 T 06-07-2017 IPR002716 PIN domain CDO28_RS26080 b9100188094c27f3b35b0fb6ce948a63 95 Pfam PF07820 TraC-like protein 4 91 1.0E-35 T 06-07-2017 IPR012930 TraC-like GO:0000746 CDO28_RS27420 7e9c0d5327e4af278f4d003905306c14 146 Pfam PF04239 Protein of unknown function (DUF421) 85 145 5.8E-13 T 06-07-2017 IPR007353 Protein of unknown function DUF421 CDO28_RS27420 7e9c0d5327e4af278f4d003905306c14 146 Gene3D G3DSA:3.30.240.20 79 146 2.0E-17 T 06-07-2017 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain CDO28_RS32705 0930223985f7cac2b3df19ff1d390e70 261 TIGRFAM TIGR02990 ectoine_eutA: ectoine utilization protein EutA 16 254 7.4E-139 T 06-07-2017 IPR014332 Ectoine utilization protein EutA CDO28_RS32705 0930223985f7cac2b3df19ff1d390e70 261 PIRSF PIRSF015736 9 257 5.8E-88 T 06-07-2017 IPR026286 Maleate isomerase/Arylmalonate decarboxylase CDO28_RS29285 703b78ee3bcebf996d874dc5071e39a8 93 Pfam PF06823 Protein of unknown function (DUF1236) 33 93 1.9E-19 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS23845 6d3a95f852f3cf54ec316cd59a7dbd64 188 SUPERFAMILY SSF53335 10 119 5.89E-9 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS23845 6d3a95f852f3cf54ec316cd59a7dbd64 188 Gene3D G3DSA:3.40.50.150 10 86 3.3E-6 T 06-07-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS19150 10534eec2cfd67e0639e2589096391e7 562 Gene3D G3DSA:1.25.40.10 333 490 2.6E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS19150 10534eec2cfd67e0639e2589096391e7 562 SUPERFAMILY SSF48452 334 489 2.2E-14 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS13280 1e78816181277a723e0d85b57a1e9ac2 341 Gene3D G3DSA:3.20.20.70 2 336 7.7E-147 T 06-07-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 CDO28_RS13280 1e78816181277a723e0d85b57a1e9ac2 341 Pfam PF00274 Fructose-bisphosphate aldolase class-I 5 338 1.4E-135 T 06-07-2017 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13280 1e78816181277a723e0d85b57a1e9ac2 341 SUPERFAMILY SSF51569 2 339 3.66E-128 T 06-07-2017 CDO28_RS13280 1e78816181277a723e0d85b57a1e9ac2 341 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 214 224 - T 06-07-2017 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDO28_RS13050 cefe73d823e8711b1a796c73421155d3 331 PIRSF PIRSF026166 1 330 2.9E-133 T 06-07-2017 IPR016833 Putative sodium bile acid cotransporter CDO28_RS13050 cefe73d823e8711b1a796c73421155d3 331 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 7 315 5.7E-99 T 06-07-2017 IPR016833 Putative sodium bile acid cotransporter CDO28_RS22035 3bec5d9ef8f2bf25bcde6d94232be4bd 75 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 16 75 3.5E-17 T 06-07-2017 IPR005126 NapC/NirT cytochrome c, N-terminal CDO28_RS22035 3bec5d9ef8f2bf25bcde6d94232be4bd 75 SUPERFAMILY SSF48695 13 75 2.21E-15 T 06-07-2017 IPR011031 Multihaem cytochrome CDO28_RS22035 3bec5d9ef8f2bf25bcde6d94232be4bd 75 Gene3D G3DSA:1.10.3820.10 17 71 2.0E-5 T 06-07-2017 CDO28_RS11210 d8fbde98ef73b73bdd3aa8703fab7a9d 119 SUPERFAMILY SSF55961 8 98 1.1E-12 T 06-07-2017 CDO28_RS11210 d8fbde98ef73b73bdd3aa8703fab7a9d 119 Gene3D G3DSA:3.30.530.20 3 98 9.6E-10 T 06-07-2017 IPR023393 START-like domain CDO28_RS26265 ce195eee88ca09675c2fd37bb380c383 127 Pfam PF01042 Endoribonuclease L-PSP 10 126 9.0E-23 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS26265 ce195eee88ca09675c2fd37bb380c383 127 Gene3D G3DSA:3.30.1330.40 2 126 3.7E-33 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS26265 ce195eee88ca09675c2fd37bb380c383 127 SUPERFAMILY SSF55298 5 126 1.57E-31 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS07015 b82d5feb437eff84c78e19686c91b7a4 148 TIGRFAM TIGR01985 phasin_2: phasin 20 140 2.1E-33 T 06-07-2017 IPR010234 Phasin, subfamily 2 CDO28_RS07015 b82d5feb437eff84c78e19686c91b7a4 148 Pfam PF09361 Phasin protein 40 136 5.8E-19 T 06-07-2017 IPR018968 Phasin CDO28_RS29925 198a9620fef6ba3cacd3ccf520f65fb6 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 3.3E-144 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS16925 6743981db5a46b087c0acd093e311dc3 231 SUPERFAMILY SSF50199 123 217 2.35E-11 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS16925 6743981db5a46b087c0acd093e311dc3 231 Gene3D G3DSA:2.40.50.90 123 212 3.8E-9 T 06-07-2017 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.1E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.1E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 1.1E-9 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 Gene3D G3DSA:1.10.10.10 2 99 6.8E-24 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 SMART SM00418 8 89 1.7E-15 T 06-07-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 SUPERFAMILY SSF46785 5 93 7.85E-23 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS27815 00787f8c5bef4b602106ac0400fe5c84 121 Pfam PF12840 Helix-turn-helix domain 10 69 1.5E-15 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS11170 42354ad2940d677be4d592574acac33f 58 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 1 44 1.2E-16 T 06-07-2017 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CDO28_RS11170 42354ad2940d677be4d592574acac33f 58 Pfam PF04995 Heme exporter protein D (CcmD) 3 44 9.7E-15 T 06-07-2017 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CDO28_RS20460 0efd9131c56c43a752810121a8a31201 28 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 28 6.5E-10 T 06-07-2017 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 CDO28_RS20460 0efd9131c56c43a752810121a8a31201 28 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 28 3.0E-9 T 06-07-2017 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 CDO28_RS23615 216475b255af967455062ef0cc514a8a 299 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 287 8.4E-30 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 SUPERFAMILY SSF53067 233 302 1.84E-9 T 06-07-2017 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 SUPERFAMILY SSF53067 331 424 1.84E-9 T 06-07-2017 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 SUPERFAMILY SSF53067 7 89 1.84E-9 T 06-07-2017 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 241 9.6E-18 T 06-07-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 Gene3D G3DSA:3.30.420.40 1 241 6.1E-17 T 06-07-2017 CDO28_RS07475 40b4143b0b030d563dbb4bad45c54bc4 462 SUPERFAMILY SSF53067 3 240 1.78E-24 T 06-07-2017 CDO28_RS05590 579da2240121221bcde10d5ae50bfb2b 220 Pfam PF03006 Haemolysin-III related 19 207 8.3E-27 T 06-07-2017 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CDO28_RS20020 3a28bcc70bc4f4a24f003aba5d10547a 119 PIRSF PIRSF018634 3 119 1.3E-38 T 06-07-2017 IPR009387 Toxin HigB-2 CDO28_RS20020 3a28bcc70bc4f4a24f003aba5d10547a 119 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 4 115 1.2E-35 T 06-07-2017 IPR009387 Toxin HigB-2 CDO28_RS29045 6e7ac40a9a2ae1a6579930f753382765 130 Pfam PF01042 Endoribonuclease L-PSP 23 128 2.0E-22 T 06-07-2017 IPR006175 YjgF/YER057c/UK114 family CDO28_RS29045 6e7ac40a9a2ae1a6579930f753382765 130 SUPERFAMILY SSF55298 10 129 3.93E-30 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS29045 6e7ac40a9a2ae1a6579930f753382765 130 Gene3D G3DSA:3.30.1330.40 20 128 8.0E-28 T 06-07-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CDO28_RS12865 fa42e47aee874bd9438fef72afa009ad 358 PIRSF PIRSF012608 5 358 4.2E-159 T 06-07-2017 IPR011200 Uncharacterised conserved protein UCP012608 CDO28_RS12865 fa42e47aee874bd9438fef72afa009ad 358 Pfam PF10094 Uncharacterized protein conserved in bacteria (DUF2332) 12 350 1.8E-111 T 06-07-2017 IPR011200 Uncharacterised conserved protein UCP012608 CDO28_RS24270 ee5a6d65c09fdb5112d8bf9689b5c4fa 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 96 164 3.9E-8 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 CDO28_RS24270 ee5a6d65c09fdb5112d8bf9689b5c4fa 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 186 254 1.5E-18 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 CDO28_RS24270 ee5a6d65c09fdb5112d8bf9689b5c4fa 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 13 77 4.2E-14 T 06-07-2017 IPR009597 Domain of unknown function DUF1206 CDO28_RS05485 1fa656ded2741a36a8acdb137c1699af 195 PIRSF PIRSF009471 1 194 1.0E-88 T 06-07-2017 IPR012038 Uncharacterised conserved protein UCP009471 CDO28_RS05485 1fa656ded2741a36a8acdb137c1699af 195 Pfam PF06742 Protein of unknown function (DUF1214) 72 171 5.2E-16 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS05485 1fa656ded2741a36a8acdb137c1699af 195 SUPERFAMILY SSF160935 38 166 1.07E-12 T 06-07-2017 CDO28_RS05485 1fa656ded2741a36a8acdb137c1699af 195 Gene3D G3DSA:2.60.120.600 26 192 8.0E-14 T 06-07-2017 IPR010621 Domain of unknown function DUF1214 CDO28_RS06985 b8f159a239876e61ef71b60190da80a6 370 Pfam PF05987 Bacterial protein of unknown function (DUF898) 25 363 2.2E-106 T 06-07-2017 IPR010295 Protein of unknown function DUF898 CDO28_RS02525 eee94ecfdc999fabcfafb1b54e98373e 75 Pfam PF05901 Excalibur calcium-binding domain 40 75 8.0E-15 T 06-07-2017 IPR008613 Excalibur calcium-binding domain CDO28_RS02525 eee94ecfdc999fabcfafb1b54e98373e 75 SMART SM00894 39 75 1.0E-19 T 06-07-2017 IPR008613 Excalibur calcium-binding domain CDO28_RS02745 b3b5fd795b2293464bd31385b558ce7a 945 Gene3D G3DSA:3.30.70.1070 862 944 9.3E-5 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS02745 b3b5fd795b2293464bd31385b558ce7a 945 SUPERFAMILY SSF110997 866 943 1.44E-5 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS02745 b3b5fd795b2293464bd31385b558ce7a 945 Pfam PF05036 Sporulation related domain 865 944 9.9E-14 T 06-07-2017 IPR007730 Sporulation-related domain GO:0042834 CDO28_RS13005 b11846ab1dced0f660697b4526fa5a5a 327 Pfam PF12146 Serine aminopeptidase, S33 43 295 7.3E-41 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS13005 b11846ab1dced0f660697b4526fa5a5a 327 Gene3D G3DSA:3.40.50.1820 20 308 4.8E-30 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS13005 b11846ab1dced0f660697b4526fa5a5a 327 SUPERFAMILY SSF53474 12 309 1.8E-34 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS00715 396f2fb16fce3011125e3695011b415b 163 Pfam PF02643 Uncharacterized ACR, COG1430 50 152 3.7E-33 T 06-07-2017 IPR003795 Protein of unknown function DUF192 CDO28_RS08550 d7a4cecddb1594304b51dfc27ce7bacb 129 Gene3D G3DSA:3.10.180.10 16 128 1.5E-18 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS08550 d7a4cecddb1594304b51dfc27ce7bacb 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 124 9.9E-14 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS08550 d7a4cecddb1594304b51dfc27ce7bacb 129 SUPERFAMILY SSF54593 7 128 2.82E-24 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS26375 57f6e84b929a7482272897770f762d75 293 Gene3D G3DSA:1.10.3720.10 58 288 5.2E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26375 57f6e84b929a7482272897770f762d75 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 288 2.5E-18 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS26375 57f6e84b929a7482272897770f762d75 293 SUPERFAMILY SSF161098 54 278 1.01E-56 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 SUPERFAMILY SSF52540 39 267 3.26E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 Gene3D G3DSA:3.40.50.300 4 265 6.4E-72 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 266 5.4E-105 T 06-07-2017 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 SMART SM00382 52 249 1.5E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS13620 b1284a0235d6dc4923b77041f4011188 275 Pfam PF00005 ABC transporter 43 191 1.4E-29 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS14635 68ec57a465d037cd34601fe8ea18ea10 398 ProSitePatterns PS01007 Transposases, Mutator family, signature. 230 254 - T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS14635 68ec57a465d037cd34601fe8ea18ea10 398 Pfam PF00872 Transposase, Mutator family 1 377 4.7E-160 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS32445 a03197a2f48f3ef72934ea8c8f55b1cc 425 PIRSF PIRSF006066 1 425 2.0E-122 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS32445 a03197a2f48f3ef72934ea8c8f55b1cc 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 411 6.2E-104 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS32445 a03197a2f48f3ef72934ea8c8f55b1cc 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 420 3.1E-113 T 06-07-2017 IPR004681 TRAP transporter permease protein GO:0016021 CDO28_RS34025 77ebf5db5451664db76a6374ab3884e9 110 Pfam PF05284 Protein of unknown function (DUF736) 20 87 2.2E-10 T 06-07-2017 IPR007948 Protein of unknown function DUF736 CDO28_RS20120 41461b56c5e5e906679f30a3b167085f 94 Pfam PF08388 Group II intron, maturase-specific domain 8 64 9.4E-15 T 06-07-2017 IPR013597 Group II intron, maturase-specific CDO28_RS01395 08f1af57ae0f532a45bf38135c34301d 205 SUPERFAMILY SSF82679 5 118 3.27E-11 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS01395 08f1af57ae0f532a45bf38135c34301d 205 Pfam PF02357 Transcription termination factor nusG 6 115 3.0E-5 T 06-07-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDO28_RS20485 23523f5b57ca21cb952ad4a633fc328e 585 Pfam PF04183 IucA / IucC family 135 369 1.4E-58 T 06-07-2017 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 CDO28_RS20485 23523f5b57ca21cb952ad4a633fc328e 585 Pfam PF06276 Ferric iron reductase FhuF-like transporter 400 558 1.6E-31 T 06-07-2017 IPR022770 Ferric iron reductase FhuF domain CDO28_RS26165 d28f508a842f29448a734e09d3747da0 439 Gene3D G3DSA:3.40.190.10 148 362 7.5E-44 T 06-07-2017 CDO28_RS26165 d28f508a842f29448a734e09d3747da0 439 SUPERFAMILY SSF53850 32 429 8.58E-56 T 06-07-2017 CDO28_RS26165 d28f508a842f29448a734e09d3747da0 439 Pfam PF01547 Bacterial extracellular solute-binding protein 48 346 5.2E-16 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS03755 c3c5d0906cee931c4eb5bf428d07aba0 141 SUPERFAMILY SSF54593 6 133 7.79E-22 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS03755 c3c5d0906cee931c4eb5bf428d07aba0 141 Gene3D G3DSA:3.10.180.10 2 139 4.1E-45 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS17655 744934c441f2f402b69e402a2324647d 95 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 06-07-2017 IPR006162 Phosphopantetheine attachment site CDO28_RS17655 744934c441f2f402b69e402a2324647d 95 SUPERFAMILY SSF47336 1 63 7.98E-16 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS17655 744934c441f2f402b69e402a2324647d 95 Gene3D G3DSA:1.10.1200.10 3 93 2.5E-22 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS17655 744934c441f2f402b69e402a2324647d 95 Pfam PF00550 Phosphopantetheine attachment site 8 61 1.4E-10 T 06-07-2017 IPR009081 Phosphopantetheine binding ACP domain CDO28_RS03495 a506d902eec4d0803b584e2aca13ddbc 216 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 8 203 25.328 T 06-07-2017 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 CDO28_RS03495 a506d902eec4d0803b584e2aca13ddbc 216 Pfam PF01794 Ferric reductase like transmembrane component 51 162 5.9E-14 T 06-07-2017 IPR013130 Ferric reductase transmembrane component-like domain CDO28_RS11080 a01252ba174c9ddc32b641e1e3ea5f95 161 SUPERFAMILY SSF55729 22 133 6.03E-11 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11080 a01252ba174c9ddc32b641e1e3ea5f95 161 Gene3D G3DSA:3.40.630.30 40 121 5.2E-9 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS09755 cab3e3e43ec4d18623164a1ee1ec0575 141 SUPERFAMILY SSF54593 6 123 3.89E-23 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS09755 cab3e3e43ec4d18623164a1ee1ec0575 141 Gene3D G3DSA:3.10.180.10 1 123 1.6E-31 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS09755 cab3e3e43ec4d18623164a1ee1ec0575 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 119 1.0E-7 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS22195 0faf1a5ebc3c07fe10977c05123cddad 74 Pfam PF02371 Transposase IS116/IS110/IS902 family 14 65 3.7E-15 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CDO28_RS06495 7cd675b3bfd2f9f5e52ff4a5101bd8ac 514 PIRSF PIRSF037567 1 512 2.4E-151 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS06495 7cd675b3bfd2f9f5e52ff4a5101bd8ac 514 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 14 509 1.8E-225 T 06-07-2017 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 CDO28_RS19905 3cd1bc1394d82f71c8a098b834b72ea9 141 SUPERFAMILY SSF54593 12 132 1.14E-28 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS19905 3cd1bc1394d82f71c8a098b834b72ea9 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 127 1.9E-15 T 06-07-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDO28_RS19905 3cd1bc1394d82f71c8a098b834b72ea9 141 Gene3D G3DSA:3.10.180.10 11 131 1.7E-30 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS14280 681cb5c251e116ea62e8cdafeea4f8b3 155 SUPERFAMILY SSF46458 24 137 2.24E-25 T 06-07-2017 IPR009050 Globin-like CDO28_RS14280 681cb5c251e116ea62e8cdafeea4f8b3 155 Gene3D G3DSA:1.10.490.10 30 138 1.3E-21 T 06-07-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CDO28_RS03335 401d6872d69d3471a2915156867aed8e 202 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 33 192 3.7E-69 T 06-07-2017 IPR010319 Transglutaminase-like cysteine peptidase, predicted CDO28_RS32260 6fdb3fb8de4f50aec1c63ca411939024 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 3.0E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32260 6fdb3fb8de4f50aec1c63ca411939024 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 3.0E-8 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS32260 6fdb3fb8de4f50aec1c63ca411939024 203 SUPERFAMILY SSF46689 6 90 1.18E-18 T 06-07-2017 IPR009057 Homeodomain-like GO:0003677 CDO28_RS32260 6fdb3fb8de4f50aec1c63ca411939024 203 Gene3D G3DSA:1.10.357.10 6 200 1.8E-35 T 06-07-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 CDO28_RS32260 6fdb3fb8de4f50aec1c63ca411939024 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 1.6E-13 T 06-07-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDO28_RS28265 5c251c293e73dff9af709f0a5d8029e8 183 Gene3D G3DSA:3.10.129.10 30 172 1.1E-27 T 06-07-2017 IPR029069 HotDog domain CDO28_RS28265 5c251c293e73dff9af709f0a5d8029e8 183 SUPERFAMILY SSF54637 28 173 5.6E-32 T 06-07-2017 IPR029069 HotDog domain CDO28_RS28265 5c251c293e73dff9af709f0a5d8029e8 183 Pfam PF01575 MaoC like domain 42 136 4.2E-11 T 06-07-2017 IPR002539 MaoC-like domain CDO28_RS16920 2f8ca63cfcfc59c2c19d7017fcd33925 299 Gene3D G3DSA:3.90.1200.10 103 267 3.4E-37 T 06-07-2017 CDO28_RS16920 2f8ca63cfcfc59c2c19d7017fcd33925 299 Pfam PF01636 Phosphotransferase enzyme family 36 252 1.1E-34 T 06-07-2017 IPR002575 Aminoglycoside phosphotransferase CDO28_RS16920 2f8ca63cfcfc59c2c19d7017fcd33925 299 SUPERFAMILY SSF56112 17 267 2.55E-51 T 06-07-2017 IPR011009 Protein kinase-like domain CDO28_RS12265 c899b298b761570cf5845e1ee393474f 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 8.2E-41 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12265 c899b298b761570cf5845e1ee393474f 308 Gene3D G3DSA:1.10.3720.10 90 300 4.2E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS12265 c899b298b761570cf5845e1ee393474f 308 SUPERFAMILY SSF161098 90 286 3.92E-19 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS15455 8aedb1453cc0f8c52bf2a4ace76af1b1 410 TIGRFAM TIGR00843 benE: benzoate transporter 19 399 1.1E-78 T 06-07-2017 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CDO28_RS15455 8aedb1453cc0f8c52bf2a4ace76af1b1 410 Pfam PF03594 Benzoate membrane transport protein 21 401 1.2E-102 T 06-07-2017 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CDO28_RS18490 493187b2ed17c42e4976a36b50a6b13a 79 Pfam PF10038 Protein of unknown function (DUF2274) 1 71 8.8E-31 T 06-07-2017 IPR018733 Protein of unknown function DUF2274 CDO28_RS18375 b0d0ad2d36608866ee9ee99fd0086663 108 Pfam PF05284 Protein of unknown function (DUF736) 3 100 7.5E-36 T 06-07-2017 IPR007948 Protein of unknown function DUF736 CDO28_RS22835 6c8a8a77eaa46681facac30d66a302fb 185 Pfam PF00293 NUDIX domain 51 168 1.4E-10 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS22835 6c8a8a77eaa46681facac30d66a302fb 185 SUPERFAMILY SSF55811 52 181 1.06E-18 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS22835 6c8a8a77eaa46681facac30d66a302fb 185 Gene3D G3DSA:3.90.79.10 52 181 4.6E-17 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS21080 5d9f270852b514b8d3c0b1b9d2415915 670 Pfam PF01594 Domain of unknown function DUF20 40 378 2.6E-48 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 Pfam PF00005 ABC transporter 22 163 5.1E-34 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 SMART SM00382 30 213 3.3E-18 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 Gene3D G3DSA:3.40.50.300 4 236 9.6E-79 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 SUPERFAMILY SSF50331 241 357 9.36E-14 T 06-07-2017 IPR008995 Molybdate/tungstate binding, C-terminal CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 SUPERFAMILY SSF52540 6 245 1.64E-84 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS22915 0470fb1037ed70cbf2bf4f2d3aaf9072 359 Pfam PF08402 TOBE domain 281 357 3.0E-14 T 06-07-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CDO28_RS04310 9b025196fe190c67344c016398904ccc 712 SUPERFAMILY SSF52540 540 685 1.59E-12 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04310 9b025196fe190c67344c016398904ccc 712 Gene3D G3DSA:3.40.50.300 534 654 1.0E-10 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS04310 9b025196fe190c67344c016398904ccc 712 Pfam PF02706 Chain length determinant protein 11 184 3.2E-18 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 CDO28_RS18465 49edbbf47b09a7c80c334636552030af 101 TIGRFAM TIGR04360 other_trbK: conjugative transfer region protein TrbK 7 81 7.6E-20 T 06-07-2017 IPR027587 Conjugative transfer region protein TrbK CDO28_RS03870 f84509c912e2c6e3b32fd2fa22fe02a8 131 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 26 129 4.4E-26 T 06-07-2017 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 Reactome: R-HSA-6799198 CDO28_RS03130 67c242193f82f043872f4e599aead255 83 Pfam PF04226 Transglycosylase associated protein 36 83 1.2E-9 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 CDO28_RS26075 ab2ee31ff90fe1d7874805be72d8868d 73 Pfam PF06412 Conjugal transfer protein TraD 3 47 2.6E-12 T 06-07-2017 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 CDO28_RS22040 91d6b01514723be81fff0af38b560dc4 313 Pfam PF05035 2-keto-3-deoxy-galactonokinase 14 302 6.7E-82 T 06-07-2017 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 CDO28_RS29440 fcb905ed708948bc082c6bd995d53d80 82 SUPERFAMILY SSF47598 2 71 1.33E-16 T 06-07-2017 IPR010985 Ribbon-helix-helix GO:0006355 CDO28_RS29440 fcb905ed708948bc082c6bd995d53d80 82 Gene3D G3DSA:1.10.1220.10 11 47 3.9E-4 T 06-07-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDO28_RS16315 d4e1584e0a6b8b950d167d65bbb15e0f 211 PIRSF PIRSF006324 1 208 5.6E-61 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS16315 d4e1584e0a6b8b950d167d65bbb15e0f 211 Pfam PF01810 LysE type translocator 15 201 1.4E-31 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS26780 cbfa5b0341c83f435adcb29aa592d76a 142 Pfam PF02566 OsmC-like protein 43 136 3.1E-14 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS26780 cbfa5b0341c83f435adcb29aa592d76a 142 Gene3D G3DSA:3.30.300.20 3 131 1.5E-17 T 06-07-2017 IPR015946 K homology domain-like, alpha/beta CDO28_RS26780 cbfa5b0341c83f435adcb29aa592d76a 142 SUPERFAMILY SSF82784 15 139 5.5E-23 T 06-07-2017 IPR003718 OsmC/Ohr family CDO28_RS31320 d9f71f2fe6567402faed6c35187975c4 304 SUPERFAMILY SSF161098 89 292 4.58E-14 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31320 d9f71f2fe6567402faed6c35187975c4 304 Gene3D G3DSA:1.10.3720.10 88 299 1.5E-11 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31320 d9f71f2fe6567402faed6c35187975c4 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 1.7E-34 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS21270 1657e247ad8b581e9e636e6275d89fec 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 299 3.7E-36 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS24395 f6373be55d25827b9c7724b66650ee25 285 Gene3D G3DSA:3.20.20.150 11 284 9.8E-55 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24395 f6373be55d25827b9c7724b66650ee25 285 Pfam PF01261 Xylose isomerase-like TIM barrel 36 236 6.7E-31 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS24395 f6373be55d25827b9c7724b66650ee25 285 SUPERFAMILY SSF51658 25 267 1.31E-52 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS18245 8dbfa0fc6c6149fb8b5646c2080e0148 97 Pfam PF05717 IS66 Orf2 like protein 1 83 4.3E-29 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS32015 a722c632db957c1d41c3e7a821f45635 235 Pfam PF01925 Sulfite exporter TauE/SafE 11 231 2.7E-24 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS05060 a8f08f14730ce74bfaf331961424eec2 928 PIRSF PIRSF035905 1 923 0.0 T 06-07-2017 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein CDO28_RS05060 a8f08f14730ce74bfaf331961424eec2 928 Pfam PF10101 Predicted membrane protein (DUF2339) 123 912 1.4E-138 T 06-07-2017 IPR019286 Protein of unknown function DUF2339, transmembrane CDO28_RS00560 f398f79b65a0a7eee88df8a3417d6af3 275 Gene3D G3DSA:1.20.1260.10 116 215 3.0E-4 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS00560 f398f79b65a0a7eee88df8a3417d6af3 275 SUPERFAMILY SSF47240 80 226 1.95E-16 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS00560 f398f79b65a0a7eee88df8a3417d6af3 275 Pfam PF04305 Protein of unknown function (DUF455) 20 266 2.0E-97 T 06-07-2017 IPR007402 Protein of unknown function DUF455 CDO28_RS00560 f398f79b65a0a7eee88df8a3417d6af3 275 PIRSF PIRSF012318 5 274 5.0E-110 T 06-07-2017 IPR011197 Uncharacterised conserved protein UCP012318 CDO28_RS28630 998772ac666ec05c70b9e7f53a2fb162 265 PIRSF PIRSF033328 1 237 1.2E-130 T 06-07-2017 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS28630 998772ac666ec05c70b9e7f53a2fb162 265 Pfam PF06299 Protein of unknown function (DUF1045) 62 218 4.7E-53 T 06-07-2017 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 CDO28_RS30270 262c4adda25c2b3149bbb0abe509471a 421 Gene3D G3DSA:3.40.50.300 135 404 1.1E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30270 262c4adda25c2b3149bbb0abe509471a 421 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 25 421 5.7E-197 T 06-07-2017 IPR017818 Plasmid partitioning protein, RepA CDO28_RS30270 262c4adda25c2b3149bbb0abe509471a 421 SUPERFAMILY SSF52540 135 386 9.61E-51 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS30270 262c4adda25c2b3149bbb0abe509471a 421 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 138 361 4.7E-40 T 06-07-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS26230 369770142be7e4b8d2c96f23b9986276 243 Pfam PF07812 TfuA-like protein 47 166 3.8E-44 T 06-07-2017 IPR012924 TfuA-like, core CDO28_RS11565 b833e7955734e3c9bb58b7555914162a 216 Gene3D G3DSA:3.40.630.30 29 206 2.0E-46 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11565 b833e7955734e3c9bb58b7555914162a 216 SUPERFAMILY SSF55729 33 181 2.56E-38 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11565 b833e7955734e3c9bb58b7555914162a 216 Pfam PF13302 Acetyltransferase (GNAT) domain 40 178 2.1E-29 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS28770 0e60217f259295cbf8cb63c06700ec35 453 Pfam PF02653 Branched-chain amino acid transport system / permease component 78 441 7.1E-35 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS21370 02bf9e9dc8a121dc282d9ddd3ce2e41b 183 Gene3D G3DSA:3.10.50.30 57 142 2.3E-8 T 06-07-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDO28_RS21920 c9590acd8ba8b3e913b62128541ff61f 63 Pfam PF05532 CsbD-like 6 57 1.5E-15 T 06-07-2017 IPR008462 CsbD-like CDO28_RS21920 c9590acd8ba8b3e913b62128541ff61f 63 SUPERFAMILY SSF69047 5 61 2.09E-12 T 06-07-2017 IPR008462 CsbD-like CDO28_RS21920 c9590acd8ba8b3e913b62128541ff61f 63 Gene3D G3DSA:1.10.1470.10 5 62 1.6E-14 T 06-07-2017 IPR008462 CsbD-like CDO28_RS05310 32ae675dbbe62f71167062b1cb2189ff 318 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 25 289 8.5E-15 T 06-07-2017 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CDO28_RS12795 42e789feed1d2f907302e2abf9d7be9a 74 Pfam PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV 4 49 1.5E-22 T 06-07-2017 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS12795 42e789feed1d2f907302e2abf9d7be9a 74 SUPERFAMILY SSF81469 11 49 4.97E-13 T 06-07-2017 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS12795 42e789feed1d2f907302e2abf9d7be9a 74 Gene3D G3DSA:1.20.5.160 1 48 2.2E-8 T 06-07-2017 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 CDO28_RS07160 d054acfb57f6f720eb4beb5fe61b1291 458 Pfam PF01547 Bacterial extracellular solute-binding protein 74 371 8.8E-25 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS07160 d054acfb57f6f720eb4beb5fe61b1291 458 Gene3D G3DSA:3.40.190.10 193 390 8.3E-14 T 06-07-2017 CDO28_RS07160 d054acfb57f6f720eb4beb5fe61b1291 458 Gene3D G3DSA:3.40.190.10 65 192 7.1E-14 T 06-07-2017 CDO28_RS07160 d054acfb57f6f720eb4beb5fe61b1291 458 SUPERFAMILY SSF53850 55 457 2.36E-49 T 06-07-2017 CDO28_RS21605 b7941d3542a3ca10bc5c0dfbecd24b67 192 Pfam PF06776 Invasion associated locus B (IalB) protein 59 191 1.3E-21 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS01195 9a6a81c4ca0015d41663861a71d8e42e 80 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 6 65 4.6E-8 T 06-07-2017 IPR018691 Protein of unknown function DUF2188 CDO28_RS23210 b802c2d228a9e62b381f3c4730d850bc 65 Gene3D G3DSA:3.30.1490.100 5 54 2.6E-8 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS23210 b802c2d228a9e62b381f3c4730d850bc 65 SUPERFAMILY SSF100879 5 48 5.1E-6 T 06-07-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDO28_RS05555 136e655e9fcd96ef988edc96dd0c475c 158 Pfam PF01899 Na+/H+ ion antiporter subunit 8 154 1.8E-43 T 06-07-2017 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDO28_RS05555 136e655e9fcd96ef988edc96dd0c475c 158 PIRSF PIRSF019239 1 158 9.2E-40 T 06-07-2017 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDO28_RS11925 2177b5d27d31b3f714213a9642697b49 285 Pfam PF00950 ABC 3 transport family 11 265 1.4E-80 T 06-07-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CDO28_RS11925 2177b5d27d31b3f714213a9642697b49 285 Gene3D G3DSA:1.10.3470.10 44 261 3.6E-8 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS11925 2177b5d27d31b3f714213a9642697b49 285 SUPERFAMILY SSF81345 5 262 1.05E-37 T 06-07-2017 IPR029022 ABC transporter, BtuC-like CDO28_RS04330 5d44972bad1453feec6f61ebb92f69bf 414 Pfam PF04932 O-Antigen ligase 198 338 6.8E-6 T 06-07-2017 IPR007016 O-antigen ligase-related CDO28_RS12075 80a17da93342d470e95652927dd70042 1869 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1519 1869 4.7E-55 T 06-07-2017 IPR007452 Translocation and assembly module TamB CDO28_RS21145 3f6f1b1147e52e2a29e507e8910e9934 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 59 315 2.2E-39 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS32055 c42d08ba72626443f5626c3b61ad42e3 323 SUPERFAMILY SSF53850 18 117 3.93E-5 T 06-07-2017 CDO28_RS32055 c42d08ba72626443f5626c3b61ad42e3 323 SUPERFAMILY SSF53850 153 249 3.93E-5 T 06-07-2017 CDO28_RS32055 c42d08ba72626443f5626c3b61ad42e3 323 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 284 3.8E-64 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS32055 c42d08ba72626443f5626c3b61ad42e3 323 PIRSF PIRSF006470 1 323 3.5E-76 T 06-07-2017 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 CDO28_RS32055 c42d08ba72626443f5626c3b61ad42e3 323 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 306 1.4E-75 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS34260 958c4441c3c3d2535ae610849a9a503c 112 Pfam PF04956 TrbC/VIRB2 family 9 104 9.1E-22 T 06-07-2017 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 CDO28_RS15255 350dbf2c7995c8553b950430b97be9f6 407 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 181 296 2.7E-9 T 06-07-2017 IPR016936 Uncharacterised conserved protein UCP029693 CDO28_RS15255 350dbf2c7995c8553b950430b97be9f6 407 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 312 406 1.2E-5 T 06-07-2017 IPR016936 Uncharacterised conserved protein UCP029693 CDO28_RS07435 6aa9193b85141336e8dfa8dd06fbbe6d 129 SMART SM00448 7 121 2.0E-32 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07435 6aa9193b85141336e8dfa8dd06fbbe6d 129 Gene3D G3DSA:3.40.50.2300 5 125 5.4E-34 T 06-07-2017 CDO28_RS07435 6aa9193b85141336e8dfa8dd06fbbe6d 129 Pfam PF00072 Response regulator receiver domain 9 122 1.3E-25 T 06-07-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDO28_RS07435 6aa9193b85141336e8dfa8dd06fbbe6d 129 SUPERFAMILY SSF52172 5 126 3.98E-34 T 06-07-2017 IPR011006 CheY-like superfamily CDO28_RS33555 b04417ac65c54f21e70759f921571645 227 Pfam PF02397 Bacterial sugar transferase 34 222 1.6E-49 T 06-07-2017 IPR003362 Bacterial sugar transferase CDO28_RS00930 3f887af59426906a222c5d25ba6e0f2c 135 Pfam PF06823 Protein of unknown function (DUF1236) 73 135 3.4E-20 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS25305 f824e4e26ada3dff9d4e19f15c832a6b 352 Pfam PF03601 Conserved hypothetical protein 698 29 323 6.2E-64 T 06-07-2017 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 CDO28_RS19185 5efa756c6890efc155c622b8826e6dcb 151 Pfam PF01638 HxlR-like helix-turn-helix 20 105 4.1E-21 T 06-07-2017 IPR002577 Helix-turn-helix, HxlR type CDO28_RS19185 5efa756c6890efc155c622b8826e6dcb 151 SUPERFAMILY SSF46785 7 135 1.19E-37 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS19185 5efa756c6890efc155c622b8826e6dcb 151 Gene3D G3DSA:1.10.10.10 2 115 3.9E-31 T 06-07-2017 IPR011991 Winged helix-turn-helix DNA-binding domain CDO28_RS05885 208b75d16f5ffee8e9e1bd57276b4f5d 302 Pfam PF07386 Protein of unknown function (DUF1499) 149 292 1.2E-9 T 06-07-2017 IPR010865 Protein of unknown function DUF1499 CDO28_RS27225 ee85bf59fb3a9b335d7331d3c7fd53a9 390 Pfam PF04230 Polysaccharide pyruvyl transferase 48 328 3.2E-20 T 06-07-2017 IPR007345 Polysaccharide pyruvyl transferase CDO28_RS16695 cc261d75d6f8a517da7a601f6d92a91a 191 SUPERFAMILY SSF55729 2 152 1.48E-37 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS16695 cc261d75d6f8a517da7a601f6d92a91a 191 Pfam PF13302 Acetyltransferase (GNAT) domain 8 150 8.4E-32 T 06-07-2017 IPR000182 GNAT domain GO:0008080 CDO28_RS16695 cc261d75d6f8a517da7a601f6d92a91a 191 Gene3D G3DSA:3.40.630.30 2 183 5.3E-49 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS00490 202bda697b95b35add163b3b907dba8c 245 Pfam PF10016 Predicted secreted protein (DUF2259) 41 242 6.7E-64 T 06-07-2017 IPR018725 Protein of unknown function DUF2259, secreted CDO28_RS28985 2970a748d5bbc26f3a30ee6d7d31916b 162 SUPERFAMILY SSF51161 16 159 1.8E-30 T 06-07-2017 IPR011004 Trimeric LpxA-like CDO28_RS28985 2970a748d5bbc26f3a30ee6d7d31916b 162 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 142 7.1E-6 T 06-07-2017 IPR001451 Hexapeptide repeat CDO28_RS28985 2970a748d5bbc26f3a30ee6d7d31916b 162 Gene3D G3DSA:2.160.10.10 20 158 2.8E-32 T 06-07-2017 CDO28_RS17750 0ace7e843b57a494b140693b5c2a4120 253 Gene3D G3DSA:3.20.20.150 4 252 1.3E-44 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS17750 0ace7e843b57a494b140693b5c2a4120 253 SUPERFAMILY SSF51658 3 235 3.91E-36 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS17750 0ace7e843b57a494b140693b5c2a4120 253 Pfam PF01261 Xylose isomerase-like TIM barrel 22 211 3.4E-14 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS20590 9118576dab4dc858132f27947414deb0 471 Gene3D G3DSA:3.90.1300.10 4 462 3.8E-85 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS20590 9118576dab4dc858132f27947414deb0 471 SUPERFAMILY SSF75304 4 456 2.62E-86 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS20590 9118576dab4dc858132f27947414deb0 471 ProSitePatterns PS00571 Amidases signature. 153 184 - T 06-07-2017 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CDO28_RS20590 9118576dab4dc858132f27947414deb0 471 Pfam PF01425 Amidase 23 447 1.7E-64 T 06-07-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDO28_RS26145 1584f09f8181c9af395d4407f97ba94f 292 Pfam PF01522 Polysaccharide deacetylase 60 168 3.3E-15 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26145 1584f09f8181c9af395d4407f97ba94f 292 Gene3D G3DSA:3.20.20.370 12 283 2.6E-76 T 06-07-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDO28_RS26145 1584f09f8181c9af395d4407f97ba94f 292 SUPERFAMILY SSF88713 12 282 1.27E-58 T 06-07-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDO28_RS03960 943446c8530779e6f5e42201d027062c 151 Pfam PF06170 Protein of unknown function (DUF983) 42 126 3.9E-30 T 06-07-2017 IPR009325 Protein of unknown function DUF983 CDO28_RS19370 86262928be2010dd950ecee86dd2c4c3 119 SUPERFAMILY SSF55073 3 114 2.67E-26 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS19370 86262928be2010dd950ecee86dd2c4c3 119 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 10 104 1.4E-7 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS19370 86262928be2010dd950ecee86dd2c4c3 119 Gene3D G3DSA:3.30.70.1230 5 114 1.2E-16 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS10000 a2993130aa5dd517e332b418f3e2cf94 387 SUPERFAMILY SSF51569 57 327 2.2E-9 T 06-07-2017 CDO28_RS10000 a2993130aa5dd517e332b418f3e2cf94 387 Pfam PF06187 Protein of unknown function (DUF993) 6 386 7.3E-189 T 06-07-2017 IPR009334 Protein of unknown function DUF993 CDO28_RS06565 ae4bb56aeae5b73a0102508dbcbce9e3 84 Pfam PF07704 Rv0623-like transcription factor 1 83 7.6E-27 T 06-07-2017 IPR011660 Rv0623-like transcription factor CDO28_RS25490 a8dffc6a98abb1df81f54dafc7493deb 153 SUPERFAMILY SSF51316 8 139 1.46E-19 T 06-07-2017 IPR011057 Mss4-like CDO28_RS25490 a8dffc6a98abb1df81f54dafc7493deb 153 Gene3D G3DSA:3.90.1590.10 7 143 3.2E-17 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS25490 a8dffc6a98abb1df81f54dafc7493deb 153 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 31 122 2.5E-9 T 06-07-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDO28_RS34325 ed5f406ec1732f8ad503987d4fd1850d 77 Gene3D G3DSA:2.40.50.100 52 76 8.4E-4 T 06-07-2017 CDO28_RS22645 a4112c3d0bb68bb86c09c76d27219e93 239 SUPERFAMILY SSF47413 2 44 1.66E-7 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS22645 a4112c3d0bb68bb86c09c76d27219e93 239 Gene3D G3DSA:1.10.260.40 2 79 1.3E-8 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS22645 a4112c3d0bb68bb86c09c76d27219e93 239 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 2 41 8.3E-5 T 06-07-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDO28_RS01315 132d4d7fb387925acaf79212992d3abb 77 Gene3D G3DSA:1.10.260.40 7 58 2.4E-6 T 06-07-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CDO28_RS13990 29e991a9a4c675f4abcbbf82ce81e840 471 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 372 455 1.4E-12 T 06-07-2017 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CDO28_RS13990 29e991a9a4c675f4abcbbf82ce81e840 471 Pfam PF01943 Polysaccharide biosynthesis protein 44 319 3.2E-13 T 06-07-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CDO28_RS16755 d560447a49ecb23935329906b25517fc 197 Pfam PF01810 LysE type translocator 16 190 4.4E-19 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS23335 3e156bf92ebdd9bbb8c8a7a809741654 95 Pfam PF07820 TraC-like protein 4 91 2.3E-35 T 06-07-2017 IPR012930 TraC-like GO:0000746 CDO28_RS33340 2d5bdcf2a97062369cce2968b7767ff5 301 Gene3D G3DSA:3.90.1480.10 70 247 3.9E-4 T 06-07-2017 CDO28_RS08855 a5fe64b594834823e0daadfb2a962b95 205 Pfam PF01810 LysE type translocator 18 202 2.4E-25 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS11930 91a16255e9034099248de0bb4fe6ac2c 311 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 06-07-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CDO28_RS11930 91a16255e9034099248de0bb4fe6ac2c 311 SMART SM00382 47 233 4.6E-11 T 06-07-2017 IPR003593 AAA+ ATPase domain CDO28_RS11930 91a16255e9034099248de0bb4fe6ac2c 311 Gene3D G3DSA:3.40.50.300 14 250 4.7E-59 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11930 91a16255e9034099248de0bb4fe6ac2c 311 SUPERFAMILY SSF52540 16 248 4.13E-55 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS11930 91a16255e9034099248de0bb4fe6ac2c 311 Pfam PF00005 ABC transporter 38 185 2.6E-27 T 06-07-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDO28_RS06120 1aad05eeb98f3b761a6d7ea495913a20 399 Pfam PF06224 Winged helix DNA-binding domain 38 382 5.7E-77 T 06-07-2017 IPR009351 Protein of unknown function DUF1006 CDO28_RS28155 1c08bc23a41e3b00c972240147266ad0 403 SUPERFAMILY SSF53756 16 273 1.66E-6 T 06-07-2017 CDO28_RS08075 63fbd16f7ae0e15068eb7a4fa97270da 221 Pfam PF01066 CDP-alcohol phosphatidyltransferase 40 109 9.0E-7 T 06-07-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDO28_RS07895 809b7192c786dd22a1593ea64fe83f81 308 Pfam PF01925 Sulfite exporter TauE/SafE 18 287 1.9E-50 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS09860 5fe95c0bbec24e1da4bc7ac54c963466 327 Pfam PF00482 Type II secretion system (T2SS), protein F 188 316 2.0E-20 T 06-07-2017 IPR018076 Type II secretion system F domain CDO28_RS16250 44aa3db4451896ed913fa536e3de4948 314 Pfam PF12146 Serine aminopeptidase, S33 26 289 1.9E-51 T 06-07-2017 IPR022742 Serine aminopeptidase, S33 CDO28_RS16250 44aa3db4451896ed913fa536e3de4948 314 Gene3D G3DSA:3.40.50.1820 8 305 7.3E-56 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS16250 44aa3db4451896ed913fa536e3de4948 314 SUPERFAMILY SSF53474 8 305 2.45E-38 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS01960 281b220d1875e0a251c912c0a6c24350 773 Pfam PF06791 Prophage tail length tape measure protein 149 264 1.4E-15 T 06-07-2017 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal CDO28_RS22300 1067e5421dbf9900565b0cfca7ad38bd 65 SUPERFAMILY SSF53720 10 46 5.13E-6 T 06-07-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CDO28_RS00545 52e0ea3ef8e807e8dcfb86e09b3970ee 135 Pfam PF00293 NUDIX domain 17 132 8.1E-22 T 06-07-2017 IPR000086 NUDIX hydrolase domain GO:0016787 CDO28_RS00545 52e0ea3ef8e807e8dcfb86e09b3970ee 135 SUPERFAMILY SSF55811 9 132 1.16E-28 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS00545 52e0ea3ef8e807e8dcfb86e09b3970ee 135 Gene3D G3DSA:3.90.79.10 11 127 1.6E-30 T 06-07-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 CDO28_RS00545 52e0ea3ef8e807e8dcfb86e09b3970ee 135 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 06-07-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CDO28_RS08220 b5fa4b5d4b150b736a3ff34ca093f838 189 Pfam PF06776 Invasion associated locus B (IalB) protein 57 188 1.7E-25 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS01155 ffa2a96b8067d0a5210467f7f8415bbe 209 Pfam PF06776 Invasion associated locus B (IalB) protein 40 169 6.7E-36 T 06-07-2017 IPR010642 Invasion protein B CDO28_RS11485 42b3d5e505789fac9eb7ff276a2b903d 144 Pfam PF06262 Zinicin-like metallopeptidase 42 135 3.5E-33 T 06-07-2017 IPR010428 Zinicin-like metallopeptidase CDO28_RS11485 42b3d5e505789fac9eb7ff276a2b903d 144 Gene3D G3DSA:3.40.390.10 104 131 2.3E-5 T 06-07-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 CDO28_RS11485 42b3d5e505789fac9eb7ff276a2b903d 144 SUPERFAMILY SSF55486 14 135 8.99E-35 T 06-07-2017 CDO28_RS08895 ad765c0d6e372a645726715dc5d6918a 193 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 23 161 6.3E-14 T 06-07-2017 IPR013078 Histidine phosphatase superfamily, clade-1 CDO28_RS08895 ad765c0d6e372a645726715dc5d6918a 193 SUPERFAMILY SSF53254 18 185 3.0E-21 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS08895 ad765c0d6e372a645726715dc5d6918a 193 Gene3D G3DSA:3.40.50.1240 4 191 1.1E-60 T 06-07-2017 IPR029033 Histidine phosphatase superfamily CDO28_RS21410 60d2327f1911399454982f98b2e92ca0 177 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 152 1.0E-28 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS19925 23d3fc6cc86110e4e62e2e79b4c5d083 341 Gene3D G3DSA:3.40.50.2300 154 297 3.1E-32 T 06-07-2017 CDO28_RS19925 23d3fc6cc86110e4e62e2e79b4c5d083 341 Gene3D G3DSA:3.40.50.2300 34 153 8.1E-21 T 06-07-2017 CDO28_RS19925 23d3fc6cc86110e4e62e2e79b4c5d083 341 Pfam PF02608 Basic membrane protein 74 316 1.4E-36 T 06-07-2017 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 CDO28_RS08605 f1e4f4b0be82452610cab4bae8c0a9cb 114 Pfam PF06305 Protein of unknown function (DUF1049) 45 85 1.9E-5 T 06-07-2017 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 CDO28_RS16820 6e30981ec34a9659cdb0d017995bab62 409 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 43 401 2.5E-29 T 06-07-2017 IPR003776 YcaO-like domain CDO28_RS16820 6e30981ec34a9659cdb0d017995bab62 409 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 92 403 1.2E-47 T 06-07-2017 IPR003776 YcaO-like domain CDO28_RS08470 4724e03dadb8613a308eec986936d4c7 143 Pfam PF00011 Hsp20/alpha crystallin family 49 140 5.7E-16 T 06-07-2017 IPR002068 Alpha crystallin/Hsp20 domain CDO28_RS08470 4724e03dadb8613a308eec986936d4c7 143 Gene3D G3DSA:2.60.40.790 49 141 1.8E-12 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS08470 4724e03dadb8613a308eec986936d4c7 143 SUPERFAMILY SSF49764 49 139 1.5E-17 T 06-07-2017 IPR008978 HSP20-like chaperone CDO28_RS20165 f169089e5f6211bcd7c9b44c453fd999 473 Pfam PF14072 DNA-sulfur modification-associated 144 436 4.0E-18 T 06-07-2017 IPR017642 DNA sulphur modification protein DndB CDO28_RS26285 a915d810b467f7d9b1a8a6b05fcca1cc 123 Pfam PF09722 Protein of unknown function (DUF2384) 71 120 4.4E-8 T 06-07-2017 IPR024467 Domain of unknown function DUF2384 CDO28_RS15415 ee4ad4fb8ffa7968a76307e8ea4b5c57 61 Pfam PF06348 Protein of unknown function (DUF1059) 1 56 9.8E-22 T 06-07-2017 IPR009409 Protein of unknown function DUF1059 CDO28_RS24175 9c2186ebc5de2aa79e1dd0e7ad027cee 215 SUPERFAMILY SSF53597 55 197 1.68E-25 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS24175 9c2186ebc5de2aa79e1dd0e7ad027cee 215 SUPERFAMILY SSF53597 9 27 1.68E-25 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS24175 9c2186ebc5de2aa79e1dd0e7ad027cee 215 Gene3D G3DSA:3.40.430.10 8 206 7.6E-39 T 06-07-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CDO28_RS24175 9c2186ebc5de2aa79e1dd0e7ad027cee 215 Pfam PF01872 RibD C-terminal domain 8 190 8.6E-17 T 06-07-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDO28_RS17345 f1bc6ccadc5ca7354ee23f841a751630 469 SMART SM00044 252 446 2.9E-8 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS17345 f1bc6ccadc5ca7354ee23f841a751630 469 SUPERFAMILY SSF55073 297 466 4.55E-41 T 06-07-2017 IPR029787 Nucleotide cyclase CDO28_RS17345 f1bc6ccadc5ca7354ee23f841a751630 469 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 297 433 1.7E-24 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS17345 f1bc6ccadc5ca7354ee23f841a751630 469 Gene3D G3DSA:3.30.70.1230 297 434 1.3E-32 T 06-07-2017 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDO28_RS08960 4ea2d55ca11f220f31f0f13a25663f5c 375 Pfam PF09375 Imelysin 51 344 1.9E-46 T 06-07-2017 CDO28_RS30035 0cbcdfd9ef49a76f97ad04e22ea74511 297 PIRSF PIRSF011468 1 295 4.8E-167 T 06-07-2017 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 CDO28_RS30035 0cbcdfd9ef49a76f97ad04e22ea74511 297 Pfam PF06007 Phosphonate metabolism protein PhnJ 6 277 1.8E-148 T 06-07-2017 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 CDO28_RS33310 7741f7ebb06f7386db51294fc9a2d1cd 281 SUPERFAMILY SSF53448 16 226 2.28E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS00120 721e523dd86937e8bfd334ca2da91eb4 92 Pfam PF04972 BON domain 22 87 1.5E-14 T 06-07-2017 IPR007055 BON domain CDO28_RS06875 bd1c970de6e047588848d2c3e8ffe5d3 121 PIRSF PIRSF034077 1 121 1.3E-51 T 06-07-2017 IPR014587 Uncharacterised conserved protein UCP034077 CDO28_RS28380 d0aac8ae2f3b5694b533ce331966fa40 420 Pfam PF05992 SbmA/BacA-like family 84 397 6.6E-162 T 06-07-2017 IPR009248 SbmA/BacA-like GO:0005215|GO:0006810|GO:0016021 CDO28_RS28380 d0aac8ae2f3b5694b533ce331966fa40 420 SUPERFAMILY SSF90123 95 399 4.71E-6 T 06-07-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CDO28_RS24280 ac93dd9a7ee82892cbc57e9526966d06 60 Pfam PF12244 Protein of unknown function (DUF3606) 3 50 4.2E-10 T 06-07-2017 IPR022037 Protein of unknown function DUF3606 CDO28_RS21740 6be9c74822f129f16d9e05512379665e 64 Gene3D G3DSA:3.40.30.10 8 45 3.4E-7 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS19650 af260509a0fe63d0c6d9b1a30291a5a2 107 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 94 7.5E-15 T 06-07-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDO28_RS01990 1674a11dfdcc39f172aa52259ba74ca1 696 Pfam PF13884 Chaperone of endosialidase 510 574 3.7E-6 T 06-07-2017 IPR030392 Intramolecular chaperone auto-processing domain CDO28_RS11850 352b129adbdaa7ab0aeb7080f0670e3d 389 Pfam PF04575 Protein of unknown function (DUF560) 269 389 4.0E-13 T 06-07-2017 IPR007655 Protein of unknown function DUF560 CDO28_RS21685 aa0e32fbe59749d5d45ed38b1ad9cc85 90 Pfam PF11154 Protein of unknown function (DUF2934) 48 83 7.5E-11 T 06-07-2017 IPR021327 Protein of unknown function DUF2934 CDO28_RS15815 6a11902b927dc517675f508b78e9bdb7 393 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 371 1.5E-46 T 06-07-2017 IPR003776 YcaO-like domain CDO28_RS15815 6a11902b927dc517675f508b78e9bdb7 393 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 372 5.5E-69 T 06-07-2017 IPR003776 YcaO-like domain CDO28_RS10990 5b2f94d734048aceb7763eda4a9397da 215 Pfam PF01810 LysE type translocator 22 212 5.3E-30 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS23980 e32eedfdb877644dbafb4fcd480c7e3a 89 SMART SM00966 18 58 4.3E-6 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS23980 e32eedfdb877644dbafb4fcd480c7e3a 89 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 18 55 8.9E-10 T 06-07-2017 IPR007159 SpoVT-AbrB domain GO:0003677 CDO28_RS23980 e32eedfdb877644dbafb4fcd480c7e3a 89 Gene3D G3DSA:2.10.260.10 15 74 1.0E-6 T 06-07-2017 CDO28_RS23980 e32eedfdb877644dbafb4fcd480c7e3a 89 SUPERFAMILY SSF89447 15 74 5.75E-12 T 06-07-2017 CDO28_RS13165 e9129d0623b0ebd0f8a279db0f898f17 145 Pfam PF06282 Protein of unknown function (DUF1036) 23 135 6.4E-43 T 06-07-2017 IPR009380 Protein of unknown function DUF1036 CDO28_RS04245 89397200421d7442b2a665252f98f417 295 Pfam PF00892 EamA-like transporter family 158 292 9.4E-13 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS04245 89397200421d7442b2a665252f98f417 295 SUPERFAMILY SSF103481 56 153 7.59E-12 T 06-07-2017 CDO28_RS04245 89397200421d7442b2a665252f98f417 295 SUPERFAMILY SSF103481 198 294 5.89E-13 T 06-07-2017 CDO28_RS27775 4ba892f60b1786f4d0e91b0cf4ade3ce 90 Pfam PF06233 Usg-like family 10 89 3.0E-42 T 06-07-2017 IPR009354 Usg-like CDO28_RS06850 97e681ac007d4fdbd2f456c0e1a0112d 122 Pfam PF06823 Protein of unknown function (DUF1236) 60 121 8.7E-17 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS11220 3f38e46c6497312b0860232074e40aaa 185 Gene3D G3DSA:3.40.630.30 2 171 6.2E-39 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11220 3f38e46c6497312b0860232074e40aaa 185 SUPERFAMILY SSF55729 4 167 2.33E-29 T 06-07-2017 IPR016181 Acyl-CoA N-acyltransferase CDO28_RS11220 3f38e46c6497312b0860232074e40aaa 185 Pfam PF13420 Acetyltransferase (GNAT) domain 5 158 9.4E-21 T 06-07-2017 CDO28_RS02160 fa85ce123df45a5a784e0db32bbd053f 278 Pfam PF12706 Beta-lactamase superfamily domain 54 240 3.2E-33 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS02160 fa85ce123df45a5a784e0db32bbd053f 278 SMART SM00849 38 217 9.0E-6 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS02160 fa85ce123df45a5a784e0db32bbd053f 278 SUPERFAMILY SSF56281 7 268 7.58E-43 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS02160 fa85ce123df45a5a784e0db32bbd053f 278 Gene3D G3DSA:3.60.15.10 7 269 2.1E-59 T 06-07-2017 IPR001279 Metallo-beta-lactamase CDO28_RS29335 8045ae5ec83a232e23fbef0e11d4c264 263 Pfam PF02104 SURF1 family 25 230 2.4E-45 T 06-07-2017 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDO28_RS23315 0aa1a42fb2efbb34fdffa41312d53850 107 Pfam PF05284 Protein of unknown function (DUF736) 4 106 5.1E-23 T 06-07-2017 IPR007948 Protein of unknown function DUF736 CDO28_RS30650 b2e31497b0b09b8ec3aaf5a3d92f4c94 318 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 307 6.4E-44 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS17200 49de257d5c3ae5c31a99b414379662c5 121 Pfam PF07886 BA14K-like protein 88 117 1.5E-13 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS08205 34fbc03c89092ec2227f0dbee1d555cf 225 Pfam PF04191 Phospholipid methyltransferase 109 203 7.7E-15 T 06-07-2017 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 CDO28_RS16680 842aa760c87c855596eb6fbcf01da7d2 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 4 59 4.9E-16 T 06-07-2017 IPR019201 Protein of unknown function DUF2065 CDO28_RS27760 2795e239ce205c03f2f3681a0f164a17 248 Pfam PF05988 Bacterial protein of unknown function (DUF899) 5 223 6.9E-82 T 06-07-2017 IPR010296 Protein of unknown function DUF899, thioredoxin-like CDO28_RS27760 2795e239ce205c03f2f3681a0f164a17 248 SUPERFAMILY SSF52833 85 176 7.5E-5 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS17855 6117a2b4fdce52309e21b7b08f6244cb 77 Pfam PF00872 Transposase, Mutator family 7 44 1.1E-10 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS21830 04d241ea52111df5c6c2d62c48f50716 163 Gene3D G3DSA:1.20.1260.10 93 159 6.6E-6 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS21830 04d241ea52111df5c6c2d62c48f50716 163 Pfam PF13628 Domain of unknown function (DUF4142) 25 160 4.2E-40 T 06-07-2017 IPR025419 Domain of unknown function DUF4142 CDO28_RS32345 5d6d4bdbdac6cf1b57818a32fff9a2d8 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 332 2.8E-48 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS00935 8c0e4ea92467c31f9de721601e3d6b88 133 Pfam PF06823 Protein of unknown function (DUF1236) 72 132 2.7E-20 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS27495 e11f07c0569ff30983848ed6991d75a4 320 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 309 3.0E-45 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS21915 88de07d47c98df0fdd97d05655e53af4 102 Pfam PF04221 RelB antitoxin 4 51 4.0E-16 T 06-07-2017 IPR007337 RelB antitoxin/Antitoxin DinJ CDO28_RS21915 88de07d47c98df0fdd97d05655e53af4 102 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 56 3.8E-18 T 06-07-2017 IPR007337 RelB antitoxin/Antitoxin DinJ CDO28_RS06930 d7c23bd900958516b7dc48cf3152c576 376 Pfam PF01594 Domain of unknown function DUF20 47 364 4.5E-34 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS25415 bbc696ca2c35d9052c20f080716ea281 83 Pfam PF04226 Transglycosylase associated protein 34 81 2.6E-14 T 06-07-2017 IPR007341 Transglycosylase-associated protein GO:0016021 CDO28_RS14575 f3f535cb40da3999597bb763d94843c3 119 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 28 97 1.4E-12 T 06-07-2017 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 CDO28_RS06270 a885de2edd0c9705486fdcf8c0fa5ff8 268 Pfam PF06629 MltA-interacting protein MipA 37 263 1.2E-42 T 06-07-2017 IPR010583 MltA-interacting MipA CDO28_RS13305 623530c8ad7623eb95e4b278f084c926 89 Pfam PF13747 Domain of unknown function (DUF4164) 3 89 1.4E-31 T 06-07-2017 IPR025310 Protein of unknown function DUF4164 CDO28_RS27925 aa9368a98f2e98df9c02cd570e491de1 300 Pfam PF01261 Xylose isomerase-like TIM barrel 27 218 3.0E-30 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS27925 aa9368a98f2e98df9c02cd570e491de1 300 SUPERFAMILY SSF51658 23 291 8.84E-40 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS27925 aa9368a98f2e98df9c02cd570e491de1 300 Gene3D G3DSA:3.20.20.150 7 291 3.9E-52 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS33365 973e7ee90b049459067dad9a6f32d4ed 677 Pfam PF01757 Acyltransferase family 16 336 1.9E-29 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 CDO28_RS12185 34bee7875a59296093ffea8bd0061eb3 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 1.8E-40 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS29205 4e2581ddb9f23cf0e8077dce42d70e70 169 Pfam PF06169 Protein of unknown function (DUF982) 94 165 9.0E-26 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS19660 d066a457b5698ffd30f07655d3693e18 149 Pfam PF07506 RepB plasmid partitioning protein 1 131 4.2E-25 T 06-07-2017 IPR011111 RepB plasmid partition CDO28_RS31875 7a22067205510467aca262ff97e7a716 130 Pfam PF06803 Protein of unknown function (DUF1232) 34 69 2.5E-14 T 06-07-2017 IPR010652 Protein of unknown function DUF1232 CDO28_RS04550 92e53d2aef8f20928a43aaf7786b71bc 452 Pfam PF13449 Esterase-like activity of phytase 90 423 1.2E-60 T 06-07-2017 IPR027372 Phytase-like domain CDO28_RS33345 18629f8981446ea96f2cf54bf0cd5666 229 Gene3D G3DSA:3.90.550.10 24 217 2.4E-6 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS33345 18629f8981446ea96f2cf54bf0cd5666 229 SUPERFAMILY SSF53448 1 222 6.75E-27 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS20220 1b99f032473d2b93563a953fba17bd42 149 SMART SM00901 28 124 2.7E-30 T 06-07-2017 IPR014966 FRG domain CDO28_RS20220 1b99f032473d2b93563a953fba17bd42 149 Pfam PF08867 FRG domain 30 118 3.8E-23 T 06-07-2017 IPR014966 FRG domain CDO28_RS04570 89e98cbdf56ac5884619cf9b860e47fb 371 Pfam PF01594 Domain of unknown function DUF20 13 344 2.5E-68 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS32455 a51bae4b7ec233bb9ce84784334e95e7 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 309 6.4E-62 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS30810 763f5b200ba8daf1bdc4095c8515c554 280 SUPERFAMILY SSF53448 16 222 2.19E-13 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS24340 b4093535670637288607b05168269406 306 SUPERFAMILY SSF161098 90 292 4.58E-15 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS24340 b4093535670637288607b05168269406 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 8.6E-35 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14040 aeff375ed58c82ff09ab64788449ed32 248 Gene3D G3DSA:3.40.50.2020 85 243 3.3E-29 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS14040 aeff375ed58c82ff09ab64788449ed32 248 SUPERFAMILY SSF53271 73 246 3.54E-31 T 06-07-2017 IPR029057 Phosphoribosyltransferase-like CDO28_RS14040 aeff375ed58c82ff09ab64788449ed32 248 Pfam PF00156 Phosphoribosyl transferase domain 188 244 1.2E-8 T 06-07-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDO28_RS29655 b16f8c7d8a875727ba4dea98b7933019 440 Pfam PF02653 Branched-chain amino acid transport system / permease component 149 390 2.9E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS29655 b16f8c7d8a875727ba4dea98b7933019 440 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 115 3.6E-8 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS27395 09b2425f62e23e39ab73898460ace97d 172 Pfam PF09990 Predicted membrane protein (DUF2231) 50 150 2.7E-25 T 06-07-2017 IPR019251 Domain of unknown function DUF2231, transmembrane CDO28_RS27395 09b2425f62e23e39ab73898460ace97d 172 PIRSF PIRSF029509 6 155 4.1E-64 T 06-07-2017 IPR016923 Uncharacterised conserved protein UCP029509, membrane CDO28_RS01535 f6597669c72a342c612c4f564ea5505c 142 Pfam PF13554 Bacteriophage related domain of unknown function 9 137 2.8E-26 T 06-07-2017 IPR025395 Protein of unknown function DUF4128 CDO28_RS09105 e1a49ad3cedae335f75e8bdd1c1ffd1b 163 SUPERFAMILY SSF47240 3 154 1.19E-55 T 06-07-2017 IPR009078 Ferritin-like superfamily CDO28_RS09105 e1a49ad3cedae335f75e8bdd1c1ffd1b 163 Pfam PF05974 Domain of unknown function (DUF892) 6 163 1.2E-62 T 06-07-2017 IPR010287 Domain of unknown function DUF892 CDO28_RS09105 e1a49ad3cedae335f75e8bdd1c1ffd1b 163 Gene3D G3DSA:1.20.1260.10 2 163 1.0E-68 T 06-07-2017 IPR012347 Ferritin-related CDO28_RS18350 393933eb3af545a852489e0ddd3e602f 140 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 29 136 1.2E-23 T 06-07-2017 IPR018754 Protein of unknown function DUF2285 CDO28_RS12095 20f040594b1edc9bc32224587c4abf32 83 Pfam PF13488 Glycine zipper 23 65 7.6E-11 T 06-07-2017 CDO28_RS14820 638ce47d084f12196eecc7794a6594d0 277 Pfam PF01774 UreD urease accessory protein 53 255 4.1E-43 T 06-07-2017 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 CDO28_RS14820 638ce47d084f12196eecc7794a6594d0 277 Hamap MF_01384 Urease accessory protein UreD [ureD]. 12 266 25.156 T 06-07-2017 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 CDO28_RS07190 aeb02385806dd643254cfd3ee75f4593 184 Pfam PF10135 Rod binding protein 94 139 1.5E-11 T 06-07-2017 IPR019301 Flagellar protein FlgJ, N-terminal CDO28_RS14995 baf2f4d8f1ad31ea854e64ca2ee8b20b 276 Gene3D G3DSA:1.10.3720.10 6 264 1.5E-51 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14995 baf2f4d8f1ad31ea854e64ca2ee8b20b 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 268 3.0E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS14995 baf2f4d8f1ad31ea854e64ca2ee8b20b 276 SUPERFAMILY SSF161098 9 276 2.09E-60 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30775 f0624b756c2131c21ad05af408499cca 286 SUPERFAMILY SSF53223 9 112 1.61E-25 T 06-07-2017 CDO28_RS30775 f0624b756c2131c21ad05af408499cca 286 Gene3D G3DSA:3.40.50.720 118 283 3.5E-41 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS30775 f0624b756c2131c21ad05af408499cca 286 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 13 100 1.3E-22 T 06-07-2017 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDO28_RS30775 f0624b756c2131c21ad05af408499cca 286 Gene3D G3DSA:3.40.192.10 10 117 4.7E-34 T 06-07-2017 CDO28_RS30775 f0624b756c2131c21ad05af408499cca 286 SUPERFAMILY SSF51735 113 283 4.26E-35 T 06-07-2017 IPR016040 NAD(P)-binding domain CDO28_RS01885 3895cd6a27e9cd28768dd8f8e1ce242a 573 Pfam PF03354 Phage Terminase 67 549 1.3E-27 T 06-07-2017 IPR005021 Phage terminase CDO28_RS17440 699c4c5ad5857a3cc111a557603bdb06 100 Pfam PF13769 Virulence factor 7 92 6.3E-29 T 06-07-2017 IPR025989 Virulence factor domain CDO28_RS13250 ed546778f2d627a90113fb6ffafba3d9 172 Pfam PF07323 Protein of unknown function (DUF1465) 15 169 6.4E-62 T 06-07-2017 IPR010848 Protein of unknown function DUF1465 CDO28_RS25805 4d305bc38bc3c7e50ffbd14f77abc2ca 328 Gene3D G3DSA:3.40.50.300 222 260 0.001 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS21475 90e39572b8234da7a1ed3c8dffd40f82 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 322 2.8E-42 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS12595 21be1c97789932c94b9e1a48f9b45bcb 250 Pfam PF03741 Integral membrane protein TerC family 18 209 1.8E-52 T 06-07-2017 IPR005496 Integral membrane protein TerC GO:0016021 CDO28_RS17700 0dacaf55c21b28eb632f02c524164ee2 296 SMART SM00342 193 277 3.0E-4 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS17700 0dacaf55c21b28eb632f02c524164ee2 296 Pfam PF12833 Helix-turn-helix domain 199 278 6.2E-14 T 06-07-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDO28_RS15795 79910d1d0096422d6d50e23bef9803a2 272 SUPERFAMILY SSF110710 8 241 2.41E-67 T 06-07-2017 CDO28_RS15795 79910d1d0096422d6d50e23bef9803a2 272 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 28 234 3.1E-55 T 06-07-2017 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 CDO28_RS03445 9709079c8b460c7c6b557e9d3778949d 219 Pfam PF07077 Protein of unknown function (DUF1345) 35 205 3.2E-49 T 06-07-2017 IPR009781 Protein of unknown function DUF1345 CDO28_RS12300 aa7ae1be3ff803eeca355e7a5f4ca53e 293 SUPERFAMILY SSF103481 197 292 2.75E-9 T 06-07-2017 CDO28_RS12300 aa7ae1be3ff803eeca355e7a5f4ca53e 293 Pfam PF00892 EamA-like transporter family 20 151 1.0E-10 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS12300 aa7ae1be3ff803eeca355e7a5f4ca53e 293 Pfam PF00892 EamA-like transporter family 161 291 5.3E-8 T 06-07-2017 IPR000620 EamA domain GO:0016020|GO:0016021 CDO28_RS12300 aa7ae1be3ff803eeca355e7a5f4ca53e 293 SUPERFAMILY SSF103481 58 154 1.01E-12 T 06-07-2017 CDO28_RS34160 770bd11d8525f661329e665a138a5cd9 190 SUPERFAMILY SSF53474 4 184 2.19E-21 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS34160 770bd11d8525f661329e665a138a5cd9 190 Gene3D G3DSA:3.40.50.1820 4 188 8.1E-30 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS08690 57c3083b92eebef7f120e87312870068 160 Gene3D G3DSA:3.30.530.20 8 159 1.6E-58 T 06-07-2017 IPR023393 START-like domain CDO28_RS08690 57c3083b92eebef7f120e87312870068 160 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 22 157 1.4E-39 T 06-07-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CDO28_RS08690 57c3083b92eebef7f120e87312870068 160 SUPERFAMILY SSF55961 12 159 5.24E-52 T 06-07-2017 CDO28_RS22055 324d55f5dabf2c1ce5613e70d040a46b 421 SUPERFAMILY SSF53850 19 420 1.41E-60 T 06-07-2017 CDO28_RS22055 324d55f5dabf2c1ce5613e70d040a46b 421 Gene3D G3DSA:3.40.190.10 160 344 1.2E-34 T 06-07-2017 CDO28_RS22055 324d55f5dabf2c1ce5613e70d040a46b 421 Pfam PF01547 Bacterial extracellular solute-binding protein 44 330 8.7E-26 T 06-07-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 CDO28_RS22055 324d55f5dabf2c1ce5613e70d040a46b 421 Gene3D G3DSA:3.40.190.10 29 159 5.7E-17 T 06-07-2017 CDO28_RS31675 e444217c2fbf8ab3e063583a93f1da90 100 SUPERFAMILY SSF53474 1 98 3.2E-19 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS31675 e444217c2fbf8ab3e063583a93f1da90 100 Gene3D G3DSA:3.40.50.1820 1 99 5.2E-29 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS08080 67c547e1bba218c02b782459a9e0bc09 391 Pfam PF01594 Domain of unknown function DUF20 39 368 6.6E-34 T 06-07-2017 IPR002549 Transmembrane protein TqsA-like CDO28_RS18360 dd64baba45c36817c4ca366b61046dd6 290 Pfam PF10134 Replication initiator protein A 25 254 6.4E-95 T 06-07-2017 IPR018777 Replication initiator protein A CDO28_RS34050 28b33ba7193eb9b9b1a16a9c50be9dea 192 Gene3D G3DSA:1.20.1290.10 66 176 7.5E-19 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS34050 28b33ba7193eb9b9b1a16a9c50be9dea 192 SUPERFAMILY SSF69118 2 177 7.34E-28 T 06-07-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDO28_RS07225 396c203bf76d4c4861b2fa892c91d5fc 115 Pfam PF07309 Flagellar protein FlaF 2 114 4.8E-34 T 06-07-2017 IPR010845 Flagellar FlaF GO:0044781 CDO28_RS33495 3ec9bc2f36db58f44ca6bd54447d32f2 511 Pfam PF04932 O-Antigen ligase 246 376 2.7E-6 T 06-07-2017 IPR007016 O-antigen ligase-related CDO28_RS14530 60142f4fec034b4c16119070f25fca6f 332 Pfam PF04116 Fatty acid hydroxylase superfamily 179 309 7.9E-19 T 06-07-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 CDO28_RS31120 61335bb423ce27064b6c4a5ec5fc6505 252 Pfam PF01925 Sulfite exporter TauE/SafE 7 236 5.2E-25 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS02735 9bec299ff80dd2796e0075c1c77687fa 272 Pfam PF02616 Segregation and condensation protein ScpA 37 252 6.5E-10 T 06-07-2017 IPR003768 Segregation and condensation protein A CDO28_RS15565 038cc469c21e9fffffc45700b285c42c 141 Pfam PF07886 BA14K-like protein 110 139 5.7E-14 T 06-07-2017 IPR012413 BA14k family GO:0009405 CDO28_RS03885 20306c1215754f5833f0878317e618b9 84 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 84 29.093 T 06-07-2017 IPR018654 Putative toxin of bacterial toxin-antitoxin pair CDO28_RS03885 20306c1215754f5833f0878317e618b9 84 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 84 1.5E-39 T 06-07-2017 IPR018654 Putative toxin of bacterial toxin-antitoxin pair CDO28_RS32205 968ab1e65bc8987109234742772e5a05 118 Pfam PF03779 SPW repeat 13 59 9.0E-15 T 06-07-2017 IPR005530 SPW repeat CDO28_RS32205 968ab1e65bc8987109234742772e5a05 118 Pfam PF03779 SPW repeat 65 110 1.3E-16 T 06-07-2017 IPR005530 SPW repeat CDO28_RS20580 f12b70799a4e6b93b26e130d4ab45aaa 258 Pfam PF01925 Sulfite exporter TauE/SafE 8 249 4.4E-40 T 06-07-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 CDO28_RS19285 ecf15254830ce165c17d306edb93c8f0 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 313 2.8E-39 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS17940 6429710588ec838096bf456143273a13 47 Pfam PF05717 IS66 Orf2 like protein 1 36 3.2E-6 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS01540 ad6f7be05bc29d70587d30208c834763 164 Pfam PF08813 Phage tail tube protein, TTP 15 104 2.9E-8 T 06-07-2017 IPR014918 Phage tail tube protein 3 CDO28_RS06715 ea0c7abd46b4cbda4ea4fde78b999962 422 Pfam PF11902 Protein of unknown function (DUF3422) 11 418 9.6E-156 T 06-07-2017 IPR021830 Protein of unknown function DUF3422 CDO28_RS09915 009ae04513acba0684d0797734aca107 194 Pfam PF07811 TadE-like protein 24 63 1.9E-6 T 06-07-2017 IPR012495 TadE-like CDO28_RS17255 e5ee20e53406f06da0a210989a96672e 477 Pfam PF03237 Terminase-like family 61 456 1.4E-86 T 06-07-2017 IPR004921 Terminase, large subunit CDO28_RS29210 b97f9610c36adfa41436bf1085930a6e 93 Pfam PF06169 Protein of unknown function (DUF982) 8 77 6.1E-23 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS07215 b9547bfc49c9eebafa702af3e4ed15dc 138 Pfam PF03963 Flagellar hook capping protein - N-terminal region 8 80 7.9E-24 T 06-07-2017 IPR005648 Flagellar hook capping protein CDO28_RS30060 6325b54e0c900c866c9743e2202c8793 313 Pfam PF01261 Xylose isomerase-like TIM barrel 56 251 1.5E-22 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS30060 6325b54e0c900c866c9743e2202c8793 313 Gene3D G3DSA:3.20.20.150 16 309 1.3E-40 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS30060 6325b54e0c900c866c9743e2202c8793 313 SUPERFAMILY SSF51658 34 304 9.12E-33 T 06-07-2017 IPR013022 Xylose isomerase-like, TIM barrel domain CDO28_RS29955 770c7b3ea21c0f1af614ad963242012d 61 Pfam PF10931 Protein of unknown function (DUF2735) 9 59 1.4E-19 T 06-07-2017 IPR021232 Protein of unknown function DUF2735 CDO28_RS32800 14cc94ce512ae5aadf77f263e8891d92 139 Pfam PF06823 Protein of unknown function (DUF1236) 77 139 2.3E-19 T 06-07-2017 IPR009642 Protein of unknown function DUF1236 CDO28_RS30435 2d2c05e41f4a3de70a8b2c6e1dd01983 305 SUPERFAMILY SSF161098 64 292 2.62E-53 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30435 2d2c05e41f4a3de70a8b2c6e1dd01983 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 297 5.5E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS30435 2d2c05e41f4a3de70a8b2c6e1dd01983 305 Gene3D G3DSA:1.10.3720.10 13 294 5.7E-55 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20600 7073c44df7bddac2e28673e80d63e716 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 334 2.5E-37 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS09115 e8a38cc1158f725a14796c28ce946bf9 326 Gene3D G3DSA:3.20.20.100 1 322 9.1E-118 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS09115 e8a38cc1158f725a14796c28ce946bf9 326 Pfam PF00248 Aldo/keto reductase family 15 309 6.9E-80 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS09115 e8a38cc1158f725a14796c28ce946bf9 326 SUPERFAMILY SSF51430 1 312 1.11E-103 T 06-07-2017 IPR023210 NADP-dependent oxidoreductase domain CDO28_RS03270 cb2212707b261c9e388049d2d32c33b0 145 Pfam PF10025 Uncharacterized conserved protein (DUF2267) 18 136 4.3E-20 T 06-07-2017 IPR018727 Protein of unknown function DUF2267 CDO28_RS27515 5349c780cae90e764c141dd2644af0db 124 Pfam PF04248 Domain of unknown function (DUF427) 25 116 3.2E-35 T 06-07-2017 IPR007361 Domain of unknown function DUF427 CDO28_RS07550 b8cb6183f08c033e4fe2dee2e8615559 366 SUPERFAMILY SSF53795 182 279 3.36E-15 T 06-07-2017 CDO28_RS07550 b8cb6183f08c033e4fe2dee2e8615559 366 Gene3D G3DSA:3.40.50.300 183 331 2.3E-13 T 06-07-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDO28_RS12620 4ecda4eefff34f918fc176bcc8bb4ce8 361 Pfam PF00149 Calcineurin-like phosphoesterase 30 303 1.1E-12 T 06-07-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 CDO28_RS12620 4ecda4eefff34f918fc176bcc8bb4ce8 361 SUPERFAMILY SSF56300 28 353 3.59E-23 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS12620 4ecda4eefff34f918fc176bcc8bb4ce8 361 Gene3D G3DSA:3.60.21.10 81 303 9.6E-17 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS12620 4ecda4eefff34f918fc176bcc8bb4ce8 361 Gene3D G3DSA:3.60.21.10 29 40 9.6E-17 T 06-07-2017 IPR029052 Metallo-dependent phosphatase-like CDO28_RS28820 d9a9c834bb352f175cfad1539c2b040b 57 Pfam PF12244 Protein of unknown function (DUF3606) 3 54 1.8E-14 T 06-07-2017 IPR022037 Protein of unknown function DUF3606 CDO28_RS06730 26e01a090937ecba0e0bf6ebb7fda321 501 Pfam PF01384 Phosphate transporter family 78 489 2.1E-108 T 06-07-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CDO28_RS04100 2d42e2cd70a9bd839d4af9cc5405495a 214 Gene3D G3DSA:1.10.150.20 145 197 4.5E-5 T 06-07-2017 CDO28_RS20395 7abb43ad77aea5de11fe87ff1e1c1dbc 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 272 1.4E-10 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20395 7abb43ad77aea5de11fe87ff1e1c1dbc 283 SUPERFAMILY SSF161098 14 283 8.9E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS20395 7abb43ad77aea5de11fe87ff1e1c1dbc 283 Gene3D G3DSA:1.10.3720.10 13 270 2.7E-52 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS27890 d983b780f9f711412d468e362170ab44 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 312 1.4E-39 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS28175 eec1bf95c164c70c458f237c39f24321 301 SUPERFAMILY SSF53448 8 280 1.35E-57 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28175 eec1bf95c164c70c458f237c39f24321 301 Gene3D G3DSA:3.90.550.10 8 297 8.1E-61 T 06-07-2017 IPR029044 Nucleotide-diphospho-sugar transferases CDO28_RS28175 eec1bf95c164c70c458f237c39f24321 301 Pfam PF00483 Nucleotidyl transferase 9 269 1.5E-21 T 06-07-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDO28_RS11830 9dde160b0de3d1fdac03ff9e37055edb 358 Pfam PF01963 TraB family 84 356 1.4E-65 T 06-07-2017 IPR002816 Pheromone shutdown, TraB CDO28_RS34290 07acf5700d0a1419886d6f87435b7542 342 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 258 2.0E-40 T 06-07-2017 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 CDO28_RS24680 fb60b870d0d934ea3b73a4b9842e643e 288 SUPERFAMILY SSF55961 77 280 3.02E-27 T 06-07-2017 CDO28_RS28100 0195f4af19327dfdfd9b94230e73ca48 98 ProDom PD594998 EXOPOLYSACCHARIDE REPRESSOR PLASMID PRODUCTION TRANSMEMBRANE MEMBRANE NODULATION SYNTHESIS SYRA PSIA 5 58 8.0E-24 T 06-07-2017 IPR024239 Exopolysaccharide production repressor CDO28_RS28100 0195f4af19327dfdfd9b94230e73ca48 98 Pfam PF11089 Exopolysaccharide production repressor 18 55 1.2E-17 T 06-07-2017 IPR024239 Exopolysaccharide production repressor CDO28_RS31235 a0ccda74beb74c27e832c9cd05ca4e30 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 74 350 6.9E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS03920 b95af77f6ca106bdbb94fea43eb70a93 311 Pfam PF03547 Membrane transport protein 160 300 9.7E-15 T 06-07-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CDO28_RS05545 3b1e4492cb568503147895ad3b46d977 116 Pfam PF03334 Na+/H+ antiporter subunit 14 92 3.2E-25 T 06-07-2017 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CDO28_RS05545 3b1e4492cb568503147895ad3b46d977 116 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 13 107 1.1E-32 T 06-07-2017 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CDO28_RS28410 5cb3a234310e4102b134c2f5e6abb01e 148 Pfam PF08818 Domain of unknown function (DU1801) 35 129 1.5E-19 T 06-07-2017 IPR014922 Domain of unknown function DUF1801 CDO28_RS28410 5cb3a234310e4102b134c2f5e6abb01e 148 SUPERFAMILY SSF159888 22 135 8.24E-18 T 06-07-2017 CDO28_RS00845 867ea7e1b2ef1655b53be5744acc6287 284 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 22 274 7.4E-42 T 06-07-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDO28_RS00845 867ea7e1b2ef1655b53be5744acc6287 284 Gene3D G3DSA:3.40.50.970 3 281 5.1E-82 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS00845 867ea7e1b2ef1655b53be5744acc6287 284 SUPERFAMILY SSF52518 14 282 1.97E-75 T 06-07-2017 IPR029061 Thiamin diphosphate-binding fold CDO28_RS17735 549188a6109bbbb8f1f5615efafd514b 305 SUPERFAMILY SSF161098 27 305 4.49E-62 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17735 549188a6109bbbb8f1f5615efafd514b 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 298 1.8E-17 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS17735 549188a6109bbbb8f1f5615efafd514b 305 Gene3D G3DSA:1.10.3720.10 20 289 4.9E-57 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS06015 fb476d8c0d62c99a8a05b1f2ccf5a542 127 Pfam PF06170 Protein of unknown function (DUF983) 31 115 1.1E-32 T 06-07-2017 IPR009325 Protein of unknown function DUF983 CDO28_RS21320 8dfe0ec11add24ef1267a274398545fa 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 85 346 6.3E-46 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS13610 88769f3384c99ab3cb685c9979a490eb 441 Pfam PF07670 Nucleoside recognition 127 227 6.8E-6 T 06-07-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CDO28_RS29745 601c362e1e637ea54a022a4c14f6c4c4 105 Pfam PF03929 PepSY-associated TM region 32 84 2.4E-12 T 06-07-2017 IPR005625 PepSY-associated TM protein CDO28_RS13520 4578661d6ef67f4237f8abb4f40d0a12 221 Pfam PF10090 Histidine phosphotransferase 32 209 4.1E-60 T 06-07-2017 IPR018762 Histidine phosphotransferase CDO28_RS20875 d2f5b9b2196e977262c7f76a96816416 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 308 1.6E-47 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS19280 366e362d5a7c83df5e6dd9b267a2135a 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 306 4.6E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS30760 293e50c33dca42afc24574d3bedfca29 187 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 147 4.9E-23 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS32620 b3bfae8d7e32bcd5046f55b3e78f560d 157 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 8.6E-62 T 06-07-2017 IPR018729 Protein of unknown function DUF2269, transmembrane CDO28_RS00095 9a3731fc6bab2c0cd4fe2af453808f50 379 Pfam PF02405 Permease MlaE 162 372 2.1E-67 T 06-07-2017 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 CDO28_RS00095 9a3731fc6bab2c0cd4fe2af453808f50 379 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 161 372 8.4E-64 T 06-07-2017 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CDO28_RS25935 96a1e17471c0e4f3d69dbf7c12de15be 138 SUPERFAMILY SSF51182 25 129 4.57E-18 T 06-07-2017 IPR011051 RmlC-like cupin domain CDO28_RS25935 96a1e17471c0e4f3d69dbf7c12de15be 138 Gene3D G3DSA:2.60.120.10 36 130 2.0E-19 T 06-07-2017 IPR014710 RmlC-like jelly roll fold CDO28_RS25935 96a1e17471c0e4f3d69dbf7c12de15be 138 Pfam PF07883 Cupin domain 51 124 1.9E-15 T 06-07-2017 IPR013096 Cupin 2, conserved barrel CDO28_RS17925 c99e46372fe10e8064ddff51d639ef35 105 SUPERFAMILY SSF48295 15 78 9.42E-17 T 06-07-2017 IPR010921 Trp repressor/replication initiator GO:0043565 CDO28_RS17925 c99e46372fe10e8064ddff51d639ef35 105 Pfam PF13518 Helix-turn-helix domain 24 78 5.7E-16 T 06-07-2017 CDO28_RS17930 7305af67a68cff5b58d969b411f49204 142 Pfam PF13276 HTH-like domain 27 81 1.5E-19 T 06-07-2017 IPR025948 HTH-like domain CDO28_RS27270 97f63198c52ca335e66a4ecd9a066688 95 Pfam PF11154 Protein of unknown function (DUF2934) 6 42 2.9E-14 T 06-07-2017 IPR021327 Protein of unknown function DUF2934 CDO28_RS00435 19b315a0dc0274ad1aa152bcbaacd722 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 19 436 5.8E-137 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS34265 e1bf1f46041ebf80aefb995be1b83c70 99 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 12 93 1.1E-22 T 06-07-2017 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB CDO28_RS06865 d8a7406f9f73e21c66a778122eb87d10 271 Gene3D G3DSA:3.40.30.10 55 149 1.9E-5 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS06865 d8a7406f9f73e21c66a778122eb87d10 271 SUPERFAMILY SSF52833 40 153 7.04E-12 T 06-07-2017 IPR012336 Thioredoxin-like fold CDO28_RS06865 d8a7406f9f73e21c66a778122eb87d10 271 Pfam PF05988 Bacterial protein of unknown function (DUF899) 2 268 1.6E-90 T 06-07-2017 IPR010296 Protein of unknown function DUF899, thioredoxin-like CDO28_RS28275 123f52dd9815beaac353fbbdff6ad66b 170 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 31 152 6.1E-22 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS04660 4e081797263730696329ed006d641722 298 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 288 5.0E-27 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS18185 31e872f961332220f1ee34faf67b2ce4 160 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 154 1.9E-23 T 06-07-2017 IPR000914 Solute-binding protein family 5 domain CDO28_RS18185 31e872f961332220f1ee34faf67b2ce4 160 SUPERFAMILY SSF53850 24 154 8.14E-34 T 06-07-2017 CDO28_RS18185 31e872f961332220f1ee34faf67b2ce4 160 Gene3D G3DSA:3.90.76.10 42 153 6.2E-28 T 06-07-2017 CDO28_RS33135 4534ed823fd23f99c12fcc8393cdcf9e 212 Pfam PF06532 Protein of unknown function (DUF1109) 10 212 2.0E-54 T 06-07-2017 IPR009495 Protein of unknown function DUF1109 CDO28_RS29920 0a7230feff40f0d54b692115af73f6c2 163 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 20 154 7.0E-21 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS07930 5d4b7291f58606bd8201ed04135f7739 361 Pfam PF01699 Sodium/calcium exchanger protein 36 184 6.3E-16 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CDO28_RS07930 5d4b7291f58606bd8201ed04135f7739 361 Pfam PF01699 Sodium/calcium exchanger protein 216 357 1.4E-6 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CDO28_RS16190 e92fb758c468357eb7d64b8f17fa71d1 515 Pfam PF13520 Amino acid permease 30 476 2.8E-49 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS16190 e92fb758c468357eb7d64b8f17fa71d1 515 PIRSF PIRSF006060 2 501 6.3E-47 T 06-07-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CDO28_RS31315 9d4dae1bac0cd4098bd0f88cb27d1ab3 307 SUPERFAMILY SSF161098 90 280 7.72E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31315 9d4dae1bac0cd4098bd0f88cb27d1ab3 307 Gene3D G3DSA:1.10.3720.10 89 292 4.4E-29 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS31315 9d4dae1bac0cd4098bd0f88cb27d1ab3 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 293 1.8E-30 T 06-07-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CDO28_RS16505 8ea7aa59ddc49fabbeea83c3ea0c27b6 53 Gene3D G3DSA:3.40.50.1390 4 47 2.2E-4 T 06-07-2017 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDO28_RS25065 f80bad16d73a1dab1cb2ddc8b09a6746 159 Pfam PF03350 Uncharacterized protein family, UPF0114 7 118 8.4E-17 T 06-07-2017 IPR005134 Uncharacterised protein family UPF0114 CDO28_RS32120 b6f1359f9fa4747bc507e87b7e0d880a 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 313 8.9E-32 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS30510 1bba74c8068bae33851216b0f7aff9ce 171 Pfam PF06186 Protein of unknown function (DUF992) 28 168 2.4E-49 T 06-07-2017 IPR009333 Protein of unknown function DUF992 CDO28_RS10600 0ddcb3bd8949bb9beb65bda10c8fd368 191 Pfam PF04186 FxsA cytoplasmic membrane protein 8 115 1.4E-30 T 06-07-2017 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 CDO28_RS24495 e2085790aef3ea7877f4f1c554abaa7e 172 Gene3D G3DSA:3.10.180.10 2 150 6.7E-29 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS24495 e2085790aef3ea7877f4f1c554abaa7e 172 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 124 7.0E-12 T 06-07-2017 CDO28_RS24495 e2085790aef3ea7877f4f1c554abaa7e 172 SUPERFAMILY SSF54593 2 151 2.1E-25 T 06-07-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDO28_RS06420 a9f5d8c1aa7c717b3357c9c74cdabf4f 148 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 72 123 4.8E-17 T 06-07-2017 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter CDO28_RS28370 d25e4bb04afc5966cc553e44a9cecbe8 194 Pfam PF07298 NnrU protein 3 191 6.6E-58 T 06-07-2017 IPR009915 NnrU domain CDO28_RS07310 b190c16b033d525a5527876b7dc926e9 179 Gene3D G3DSA:1.10.220.30 116 168 5.5E-5 T 06-07-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical CDO28_RS29050 b6cee100824774c490d21255b51c49a5 144 Pfam PF13767 Domain of unknown function (DUF4168) 52 129 1.1E-17 T 06-07-2017 IPR025433 Domain of unknown function DUF4168 CDO28_RS17960 5a685da3d5914199404871f3e06e284b 109 Pfam PF05717 IS66 Orf2 like protein 5 99 3.1E-31 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS01415 f34f9656962eacbe5841d229fbaebc88 60 Pfam PF04964 Flp/Fap pilin component 10 53 8.0E-19 T 06-07-2017 IPR007047 Flp/Fap pilin component CDO28_RS04395 596f9dea0eaab512f1a8a9894741e149 168 Pfam PF04355 SmpA / OmlA family 42 116 1.7E-20 T 06-07-2017 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 CDO28_RS31030 5ae8b49a6bd72e87f622f95fe51b1c89 100 Pfam PF13670 Peptidase propeptide and YPEB domain 14 92 1.3E-8 T 06-07-2017 IPR025711 PepSY domain CDO28_RS25115 45ea5a3afcd1e6ccadd1fc620ab27de8 93 SUPERFAMILY SSF82689 4 56 2.35E-6 T 06-07-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDO28_RS23755 b3ec70fd8f22473e04116bd46a46279d 126 Pfam PF10012 Uncharacterized protein conserved in bacteria (DUF2255) 49 117 5.6E-18 T 06-07-2017 IPR016888 Uncharacterised conserved protein UCP028498 CDO28_RS14030 c3e62b6968f15c04014c18724c3d15db 57 Pfam PF04964 Flp/Fap pilin component 8 51 2.9E-16 T 06-07-2017 IPR007047 Flp/Fap pilin component CDO28_RS27745 26da80ee05b01388aadb28551473b2a1 183 Pfam PF07813 LTXXQ motif family protein 73 173 5.2E-21 T 06-07-2017 IPR012899 LTXXQ motif family protein GO:0042597 CDO28_RS29890 1d96dc888c390113c661ff0198f34519 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 326 7.9E-41 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS28080 a00bee4a054f83fefaa091f0e4f2f930 335 Pfam PF01757 Acyltransferase family 4 304 6.5E-18 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 CDO28_RS34565 66c1248804ad92058b4704a5bdb48285 67 Gene3D G3DSA:1.10.150.20 2 55 3.7E-5 T 06-07-2017 CDO28_RS34565 66c1248804ad92058b4704a5bdb48285 67 SUPERFAMILY SSF47789 2 57 3.92E-7 T 06-07-2017 CDO28_RS01970 4af8a8fba906bd224d50ef5e0c9a6859 194 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 3 73 9.3E-5 T 06-07-2017 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal CDO28_RS17375 5e2efacad4035630b0ca7b4cb2f728fd 199 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 131 189 1.2E-19 T 06-07-2017 CDO28_RS01270 8bb61edc50dda4cea1157e59cca9469e 176 Pfam PF05565 Siphovirus Gp157 15 174 1.2E-23 T 06-07-2017 IPR008840 Siphovirus Gp157 CDO28_RS32060 cfe3ebb0a714ba3b8f3cee98e8db9f85 172 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 26 154 1.1E-27 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS08620 422e2cf834a4cc21a5b9450fd39fca10 222 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 83 212 3.0E-6 T 06-07-2017 IPR010664 Lipopolysaccharide assembly, LptC-related CDO28_RS20535 d4e1b86cccbf96061a34326af3a49118 137 Pfam PF11512 Agrobacterium tumefaciens protein Atu4866 57 130 1.6E-39 T 06-07-2017 IPR020955 Uncharacterised protein family Atu4866 CDO28_RS29395 3976f94f5b7fce6cd14c433ea857ea92 120 PIRSF PIRSF033367 1 119 1.3E-45 T 06-07-2017 IPR017015 Uncharacterised conserved protein UCP033367, VanZ, Bll3170 CDO28_RS18230 2212318e00f5beccaed3ce1a06127f6d 93 Pfam PF00872 Transposase, Mutator family 8 72 2.7E-24 T 06-07-2017 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 CDO28_RS34215 57e1951899f3414239a3343812f12859 337 Gene3D G3DSA:3.40.50.1820 105 314 8.1E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS34215 57e1951899f3414239a3343812f12859 337 SUPERFAMILY SSF53474 104 318 1.87E-20 T 06-07-2017 IPR029058 Alpha/Beta hydrolase fold CDO28_RS09425 d7236c2864e775b867ddbfb9d7156c9d 203 Pfam PF01810 LysE type translocator 16 201 1.3E-22 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS32975 fc23358e85908dae63e7025eb439ba74 81 Pfam PF06568 Domain of unknown function (DUF1127) 46 66 1.3E-4 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS10680 ffe4aaf4a65899724d55fd1a6702a01f 181 Pfam PF04390 Lipopolysaccharide-assembly 21 172 6.8E-10 T 06-07-2017 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 CDO28_RS17680 86db0b5bf491eaf664a7dddd19b2f5b1 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 16 302 2.7E-41 T 06-07-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDO28_RS17910 af8beca0985d1741b2c763e3a346a5e7 67 Gene3D G3DSA:1.20.5.40 16 37 1.3E-7 T 06-07-2017 CDO28_RS07390 680df8305176067ae7fe3f57f1a4c3d5 148 PIRSF PIRSF034217 3 146 2.6E-75 T 06-07-2017 IPR017024 Uncharacterised conserved protein UCP034217 CDO28_RS34425 569e597202ad7fff578f5e627db9fcb7 78 Pfam PF05717 IS66 Orf2 like protein 44 74 7.2E-8 T 06-07-2017 IPR008878 Transposase IS66, Orf2 CDO28_RS04040 869c3a999dcd221573fc53d8042a11f4 89 Pfam PF07330 Protein of unknown function (DUF1467) 1 81 3.9E-30 T 06-07-2017 IPR009935 Protein of unknown function DUF1467 CDO28_RS05490 e0a8e816830099e4aa0e52fa80ae0443 181 PIRSF PIRSF010244 1 181 1.1E-54 T 06-07-2017 IPR014456 Uncharacterised conserved protein UCP010244, integral membrane protein CDO28_RS24155 8d404dceb1e7cbbfdaa83a92db3bb18f 223 Pfam PF01464 Transglycosylase SLT domain 9 109 5.6E-6 T 06-07-2017 IPR008258 Transglycosylase SLT domain 1 CDO28_RS24700 6b7404cacc9bcc65dfe29550bf374a60 340 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 324 1.6E-40 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS26565 93ea6dc0df5b1bf640dd8ce569e684d4 322 Pfam PF14099 Polysaccharide lyase 55 305 8.4E-58 T 06-07-2017 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 CDO28_RS28120 e85756d72d03bb35b5e89330a2785723 494 Pfam PF13440 Polysaccharide biosynthesis protein 34 323 3.8E-65 T 06-07-2017 CDO28_RS28685 2ed3ef78baa4ceba17c86205ea111fb6 313 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 309 2.7E-90 T 06-07-2017 IPR007296 Domain of unknown function DUF403 CDO28_RS07545 3ebe3f9a51ba761a698dc1b7d3ece7e9 360 Pfam PF14907 Uncharacterised nucleotidyltransferase 23 277 9.3E-28 T 06-07-2017 CDO28_RS13825 50a5c243b546ddca3edd687281582373 337 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 34 335 5.7E-70 T 06-07-2017 IPR018666 Protein of unknown function DUF2125 CDO28_RS16935 b730db5a1b842b094d5c52477ed8d1d4 196 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 38 192 1.8E-54 T 06-07-2017 IPR010319 Transglutaminase-like cysteine peptidase, predicted CDO28_RS07300 41075ed629fb13df724a3d91e25c938c 163 Pfam PF03748 Flagellar basal body-associated protein FliL 74 163 1.0E-12 T 06-07-2017 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 CDO28_RS05655 19237cd812a13188932df9abe1266145 212 Pfam PF01810 LysE type translocator 18 203 1.1E-23 T 06-07-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 CDO28_RS27015 cbc39ab285589f5597b17fe64a84ed38 377 Pfam PF01757 Acyltransferase family 8 335 4.4E-27 T 06-07-2017 IPR002656 Acyltransferase 3 GO:0016747 CDO28_RS18850 fd72022e8012dc811df371ba3c6a9759 577 Pfam PF09977 Putative Tad-like Flp pilus-assembly 60 168 4.7E-13 T 06-07-2017 IPR018705 Domain of unknown function DUF2134, membrane CDO28_RS34595 7dc82332bc07f18541e5cd874755a6fe 642 SUPERFAMILY SSF48452 464 613 9.86E-15 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS34595 7dc82332bc07f18541e5cd874755a6fe 642 Gene3D G3DSA:1.25.40.10 419 612 8.4E-19 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS29460 656ab4e85b0cc968da39e617bd538ce6 436 Pfam PF01943 Polysaccharide biosynthesis protein 31 269 1.7E-10 T 06-07-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CDO28_RS18530 88427df1de59e25af807b2c2553c0073 894 Pfam PF12705 PD-(D/E)XK nuclease superfamily 616 888 1.2E-21 T 06-07-2017 CDO28_RS23545 4357b4e988df8dcc8a3bdf1fa48fed3c 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 12 144 3.5E-18 T 06-07-2017 IPR009936 Protein of unknown function DUF1468 CDO28_RS16825 5508e89f6dfc6e7444bf949c29a01fbe 260 Pfam PF07812 TfuA-like protein 55 180 1.7E-43 T 06-07-2017 IPR012924 TfuA-like, core CDO28_RS29220 387590885fcd616803a2e634684f4e24 140 Pfam PF04120 Low affinity iron permease 7 129 1.5E-47 T 06-07-2017 IPR007251 Low affinity iron permease, Fet4 GO:0055085 CDO28_RS21565 0b1cb1d1f0bb3b27e95f5483debdb832 66 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 1 43 3.2E-10 T 06-07-2017 IPR019239 Bacterial antitoxin of type II TA system, VapB CDO28_RS00390 8a5bf03413e46bb65c351e5598c74fc8 80 Pfam PF06568 Domain of unknown function (DUF1127) 35 71 1.0E-8 T 06-07-2017 IPR009506 Protein of unknown function DUF1127 CDO28_RS33115 c53e8addaa165b33fd9a8709357624d8 266 Pfam PF09836 Putative DNA-binding domain 21 108 1.1E-23 T 06-07-2017 IPR018640 Putative DNA-binding domain, bacteria CDO28_RS02935 db29c35436432eb2b9144cf93d910b70 248 Pfam PF03591 AzlC protein 32 163 2.2E-14 T 06-07-2017 IPR011606 Branched-chain amino acid transport, permease CDO28_RS07570 4aca4c5502cf7a9e8605a1261d902f6b 87 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 82 4.4E-15 T 06-07-2017 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system CDO28_RS06520 e4756940010a9b49340cf84adcda03fd 77 Pfam PF09866 Uncharacterized protein conserved in bacteria (DUF2093) 24 64 4.8E-22 T 06-07-2017 IPR018661 Protein of unknown function DUF2093 CDO28_RS16480 8ba8efc0b6fed962f92f13963b6e5254 102 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 9 98 1.5E-13 T 06-07-2017 IPR008407 Branched-chain amino acid transport, AzlD CDO28_RS33535 bf1fcb6ca4e585eac437a86a8ee59ba4 518 Pfam PF02706 Chain length determinant protein 5 153 6.3E-11 T 06-07-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 CDO28_RS24860 6f7af72c570ea12b9401689756fefee5 141 Pfam PF07811 TadE-like protein 17 59 6.6E-16 T 06-07-2017 IPR012495 TadE-like CDO28_RS27465 298e27f5f46d053b78641a41cb5ecdc6 357 Pfam PF01699 Sodium/calcium exchanger protein 14 152 1.3E-5 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CDO28_RS27465 298e27f5f46d053b78641a41cb5ecdc6 357 Pfam PF01699 Sodium/calcium exchanger protein 203 346 5.6E-8 T 06-07-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CDO28_RS03165 0879023e5b63b1bc83ebe3efd0557e93 106 Pfam PF04977 Septum formation initiator 23 100 4.6E-19 T 06-07-2017 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 CDO28_RS28365 719697682a50c1b91fc9edc4ae1ad176 222 SUPERFAMILY SSF48452 98 221 1.33E-5 T 06-07-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CDO28_RS28365 719697682a50c1b91fc9edc4ae1ad176 222 Pfam PF09976 Tetratricopeptide repeat-like domain 22 212 2.5E-17 T 06-07-2017 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038 CDO28_RS00055 24128e6b8cda52d8fed1a270c1978c5c 375 Pfam PF11064 Protein of unknown function (DUF2865) 206 297 4.8E-29 T 06-07-2017 IPR021293 Protein of unknown function DUF2865 CDO28_RS34475 03f9cad321ef9d19e3a49bf64d742d57 268 Pfam PF06182 ABC-2 family transporter protein 37 267 1.3E-39 T 06-07-2017 IPR010390 Protein of unknown function DUF990 CDO28_RS03370 dea2aea901a83a2dc72572bd90bc6727 340 Pfam PF07786 Protein of unknown function (DUF1624) 23 246 1.3E-75 T 06-07-2017 IPR012429 Protein of unknown function DUF1624 KEGG: 00531+2.3.1.78|Reactome: R-HSA-2024096|Reactome: R-HSA-2206291 CDO28_RS06075 51475937006e122df8d2a4ef7d26ab12 86 Pfam PF07076 Protein of unknown function (DUF1344) 24 83 7.5E-30 T 06-07-2017 IPR009780 Protein of unknown function DUF1344 CDO28_RS16615 f4c02005b41ce12f20635bdc0e0f72da 71 Pfam PF13770 Domain of unknown function (DUF4169) 3 56 2.6E-23 T 06-07-2017 IPR025227 Protein of unknown function DUF4169 CDO28_RS32150 9162bfe58d9a4e6f7ecd1482b994ad82 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 314 7.0E-56 T 06-07-2017 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 CDO28_RS33485 7b72c21c543a1af7891cab7bf162f079 719 Pfam PF13524 Glycosyl transferases group 1 229 302 4.0E-13 T 06-07-2017 CDO28_RS19450 5deee2f64c333f63ca53e089ee299215 175 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 24 164 1.0E-38 T 06-07-2017 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase CDO28_RS03865 cd79c98b658ad0c429fe356b5c212c6d 150 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 44 135 1.6E-36 T 06-07-2017 IPR019225 Protein of unknown function DUF2155 CDO28_RS18555 8be20848b00310c697ccdecfc378177d 289 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 38 261 9.3E-40 T 06-07-2017 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system CDO28_RS08475 a77a04d95193d7aacfbf144145799c27 85 Pfam PF06620 Protein of unknown function (DUF1150) 10 85 9.8E-31 T 06-07-2017 IPR009531 Protein of unknown function DUF1150 CDO28_RS33195 52c31ebc227cabeb8dda364bf43180ed 81 Pfam PF06169 Protein of unknown function (DUF982) 7 78 4.9E-22 T 06-07-2017 IPR010385 Protein of unknown function DUF982 CDO28_RS29865 0538e6d471185017ebbe2bbd1b008c91 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 328 1.2E-47 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS00835 c7e64d5f0da7738633dabc09db65d1d1 188 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 44 171 1.5E-21 T 06-07-2017 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component CDO28_RS30065 2e4f450e9ee3626b67e3c897667a9701 512 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 9.9E-129 T 06-07-2017 IPR002823 Protein of unknown function DUF112, transmembrane CDO28_RS07490 3f77fc7102a795659c9915c2b3457802 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 305 7.9E-48 T 06-07-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 CDO28_RS13230 69a93176b6380ac702b1f36d6eecb311 368 Pfam PF01618 MotA/TolQ/ExbB proton channel family 121 220 2.5E-5 T 06-07-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 CDO28_RS13710 d53b7181a0a99ae035516c1347223434 480 SUPERFAMILY SSF141523 54 175 3.66E-9 T 06-07-2017 CDO28_RS28790 9864ec1ced9777d48b49a573f7b5323d 141 Pfam PF02371 Transposase IS116/IS110/IS902 family 113 140 7.2E-6 T 06-07-2017 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CDO28_RS05530 c164229eb02d78632c2233de9a91b07d 145 ProDom PD102069 BLL3070 ATU0920 MEMBRANE AGR_C_1676P PRECURSOR TRANSMEMBRANE R01001 MLL7648 SIGNAL 1 124 2.0E-67 T 06-07-2017 CDO28_RS32750 5a28b4a9e4221bfdb6f9e8e026468f1f 468 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 255 455 4.2E-72 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS32750 5a28b4a9e4221bfdb6f9e8e026468f1f 468 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 248 9.4E-78 T 06-07-2017 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDO28_RS23285 be2b650e7c41d25891d2bde3ab6be955 313 Pfam PF10686 Protein of unknown function (DUF2493) 196 262 1.7E-27 T 06-07-2017 IPR019627 Mycobacteriophage D29, Gp61 CDO28_RS24795 0d9c0b8e42237d31dbac308c5241499d 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 160 3.8E-36 T 06-07-2017 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDO28_RS14830 22837055834f4e2f48a23da9c5901cae 84 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 3.1E-30 T 06-07-2017 IPR010696 Protein of unknown function DUF1272 CDO28_RS30560 c334f674ae9fe57b038bfef49672cbd5 82 Pfam PF07704 Rv0623-like transcription factor 6 52 6.9E-7 T 06-07-2017 IPR011660 Rv0623-like transcription factor