locus-tag	class	description
CJD35_RS00030	COG0246	Mannitol dehydrogenase
CJD35_RS00035	COG1904	glucuronate isomerase
CJD35_RS00040	COG2271	Major facilitator Superfamily
CJD35_RS00045	COG1609	Transcriptional regulator
CJD35_RS00050	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CJD35_RS00065	COG0477	Major facilitator Superfamily
CJD35_RS00080	COG0284	orotidine-5'-phosphate decarboxylase activity
CJD35_RS00095	COG0729	surface antigen
CJD35_RS00140	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CJD35_RS00145	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CJD35_RS00155	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJD35_RS00160	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJD35_RS00175	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJD35_RS00210	COG0009	L-threonylcarbamoyladenylate synthase
CJD35_RS00220	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJD35_RS00225	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS00235	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS00275	COG0670	Belongs to the BI1 family
CJD35_RS00280	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CJD35_RS00285	COG2032	superoxide dismutase activity
CJD35_RS00290	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CJD35_RS00290	COG2885	chlorophyll binding
CJD35_RS00380	COG4695	Portal protein
CJD35_RS00400	COG2234	aminopeptidase activity
CJD35_RS00400	COG4935	Belongs to the peptidase S8 family
CJD35_RS00435	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJD35_RS00450	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJD35_RS00455	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS00475	COG0436	Aminotransferase
CJD35_RS00485	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CJD35_RS00490	COG0129	dihydroxy-acid dehydratase activity
CJD35_RS00495	COG0837	glucose binding
CJD35_RS00500	COG0800	Aldolase
CJD35_RS00510	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CJD35_RS00515	COG0113	porphobilinogen synthase activity
CJD35_RS00520	COG0346	lactoylglutathione lyase activity
CJD35_RS00540	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJD35_RS00545	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJD35_RS00560	COG4149	molybdate abc transporter
CJD35_RS00565	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CJD35_RS00570	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS00585	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJD35_RS00590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD35_RS00600	COG0612	Peptidase, M16
CJD35_RS00605	COG0513	Belongs to the DEAD box helicase family
CJD35_RS00620	COG1214	PFAM Peptidase M22, glycoprotease
CJD35_RS00625	COG1214	PFAM Peptidase M22, glycoprotease
CJD35_RS00625	COG0456	acetyltransferase
CJD35_RS00630	COG4957	zinc ion binding
CJD35_RS00645	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJD35_RS00650	COG1702	phosphate starvation-inducible protein PhoH
CJD35_RS00655	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CJD35_RS00660	COG1253	flavin adenine dinucleotide binding
CJD35_RS00675	COG0564	pseudouridine synthase activity
CJD35_RS00680	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJD35_RS00700	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJD35_RS00705	COG0740	serine-type endopeptidase activity
CJD35_RS00715	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJD35_RS00740	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CJD35_RS00745	COG0004	ammonium transporteR
CJD35_RS00755	COG0477	Major facilitator Superfamily
CJD35_RS00760	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJD35_RS00770	COG1845	cytochrome c oxidase, subunit III
CJD35_RS00775	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CJD35_RS00790	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CJD35_RS00800	COG1002	Type II restriction enzyme, methylase subunits
CJD35_RS00805	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD35_RS00810	COG4191	Histidine kinase
CJD35_RS00810	COG0784	Response regulator, receiver
CJD35_RS00835	COG1045	serine acetyltransferase
CJD35_RS00840	COG0730	response to heat
CJD35_RS00845	COG0583	DNA-binding transcription factor activity
CJD35_RS00860	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CJD35_RS00880	COG2081	HI0933 family
CJD35_RS00885	COG1671	Belongs to the UPF0178 family
CJD35_RS00895	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJD35_RS00895	COG0475	glutathione-regulated potassium exporter activity
CJD35_RS00900	COG2363	Small membrane protein
CJD35_RS00910	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJD35_RS00920	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJD35_RS00925	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CJD35_RS00930	COG0196	riboflavin kinase activity
CJD35_RS00945	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CJD35_RS00955	COG0588	phosphoglycerate mutase activity
CJD35_RS00960	COG0616	signal peptide processing
CJD35_RS00965	COG2860	membrane
CJD35_RS00975	COG0386	Belongs to the glutathione peroxidase family
CJD35_RS00985	COG0488	(ABC) transporter
CJD35_RS01010	COG2832	Protein of unknown function (DUF454)
CJD35_RS01030	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJD35_RS01035	COG5487	UPF0391 membrane protein
CJD35_RS01050	COG1049	propionate catabolic process, 2-methylcitrate cycle
CJD35_RS01075	COG1228	amidohydrolase
CJD35_RS01095	COG2188	Transcriptional regulator
CJD35_RS01105	COG2204	response regulator
CJD35_RS01110	COG0784	Response regulator, receiver
CJD35_RS01110	COG2205	protein histidine kinase activity
CJD35_RS01115	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJD35_RS01130	COG0784	Response regulator, receiver
CJD35_RS01140	COG0343	queuine tRNA-ribosyltransferase activity
CJD35_RS01155	COG5001	Diguanylate cyclase
CJD35_RS01155	COG3300	MHYT domain
CJD35_RS01160	COG0456	acetyltransferase
CJD35_RS01165	COG0459	protein refolding
CJD35_RS01170	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJD35_RS01175	COG0589	response to stress
CJD35_RS01180	COG0625	glutathione transferase activity
CJD35_RS01185	COG2910	NAD(P)H-binding
CJD35_RS01195	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJD35_RS01205	COG0497	DNA recombination
CJD35_RS01210	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJD35_RS01225	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJD35_RS01230	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CJD35_RS01235	COG1435	thymidine kinase activity
CJD35_RS01245	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CJD35_RS01250	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CJD35_RS01270	COG0779	Required for maturation of 30S ribosomal subunits
CJD35_RS01275	COG2133	pyrroloquinoline quinone binding
CJD35_RS01280	COG0504	CTP synthase activity
CJD35_RS01290	COG0149	triose-phosphate isomerase activity
CJD35_RS01300	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJD35_RS01315	COG0583	DNA-binding transcription factor activity
CJD35_RS01320	COG0129	dihydroxy-acid dehydratase activity
CJD35_RS01330	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CJD35_RS01340	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CJD35_RS01350	COG1309	transcriptional regulator
CJD35_RS01355	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CJD35_RS01365	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJD35_RS01375	COG1722	exodeoxyribonuclease VII activity
CJD35_RS01390	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJD35_RS01400	COG4106	trans-aconitate 2-methyltransferase activity
CJD35_RS01400	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJD35_RS01420	COG0494	nUDIX hydrolase
CJD35_RS01440	COG0825	malonyl-CoA metabolic process
CJD35_RS01445	COG4974	Belongs to the 'phage' integrase family
CJD35_RS01460	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CJD35_RS01465	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CJD35_RS01475	COG0254	rRNA binding
CJD35_RS01480	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJD35_RS01495	COG0750	zinc metalloprotease
CJD35_RS01500	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJD35_RS01510	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CJD35_RS01515	COG0233	cytoplasmic translational termination
CJD35_RS01520	COG0528	UMP kinase activity
CJD35_RS01525	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJD35_RS01530	COG0052	Belongs to the universal ribosomal protein uS2 family
CJD35_RS01540	COG1183	phosphatidylcholine synthase activity
CJD35_RS01550	COG0538	isocitrate dehydrogenase activity
CJD35_RS01555	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD35_RS01555	COG3153	acetyltransferase
CJD35_RS01560	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJD35_RS01565	COG1408	metallophosphoesterase
CJD35_RS01570	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJD35_RS01575	COG0546	phosphoglycolate phosphatase activity
CJD35_RS01580	COG1024	Enoyl-CoA hydratase
CJD35_RS01585	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD35_RS01595	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD35_RS01605	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJD35_RS01610	COG0039	L-malate dehydrogenase activity
CJD35_RS01615	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CJD35_RS01625	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJD35_RS01645	COG1213	nucleotidyl transferase
CJD35_RS01655	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJD35_RS01660	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJD35_RS01670	COG1612	heme a metabolic process
CJD35_RS01675	COG0800	Aldolase
CJD35_RS01680	COG3734	2-keto-3-deoxy-galactonokinase
CJD35_RS01685	COG0129	dihydroxy-acid dehydratase activity
CJD35_RS01700	COG2186	Transcriptional regulator
CJD35_RS01730	COG3128	pkhd-type hydroxylase
CJD35_RS01740	COG4774	siderophore transport
CJD35_RS01750	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS01755	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CJD35_RS01765	COG1832	CoA-binding protein
CJD35_RS01770	COG0489	protein tyrosine kinase activity
CJD35_RS01775	COG0330	HflC and HflK could
CJD35_RS01780	COG0330	HflC and HflK could
CJD35_RS01790	COG0433	COG0433 Predicted ATPase
CJD35_RS01820	COG0085	RNA polymerase activity
CJD35_RS01825	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CJD35_RS01910	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CJD35_RS01920	COG4774	siderophore transport
CJD35_RS01935	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS01940	COG0531	amino acid
CJD35_RS01945	COG0484	heat shock protein binding
CJD35_RS01950	COG0443	Heat shock 70 kDa protein
CJD35_RS01970	COG1053	succinate dehydrogenase
CJD35_RS02000	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CJD35_RS02005	COG0217	transcriptional regulatory protein
CJD35_RS02010	COG0393	Putative heavy-metal-binding
CJD35_RS02015	COG3750	Belongs to the UPF0335 family
CJD35_RS02025	COG0469	pyruvate kinase activity
CJD35_RS02030	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJD35_RS02040	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CJD35_RS02045	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CJD35_RS02055	COG1420	regulation of RNA biosynthetic process
CJD35_RS02060	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CJD35_RS02080	COG2866	Carboxypeptidase
CJD35_RS02090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJD35_RS02100	COG3682	Transcriptional regulator
CJD35_RS02105	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CJD35_RS02120	COG0066	3-isopropylmalate dehydratase activity
CJD35_RS02125	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CJD35_RS02175	COG5507	3-demethylubiquinone-9 3-methyltransferase
CJD35_RS02185	COG2070	2-Nitropropane dioxygenase
CJD35_RS02195	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJD35_RS02205	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJD35_RS02235	COG3920	Histidine kinase
CJD35_RS02240	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CJD35_RS02255	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJD35_RS02280	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CJD35_RS02305	COG1217	gtp-binding protein TYPA
CJD35_RS02340	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CJD35_RS02350	COG1530	ribonuclease E activity
CJD35_RS02365	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJD35_RS02370	COG0594	ribonuclease P activity
CJD35_RS02375	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CJD35_RS02380	COG0706	membrane insertase activity
CJD35_RS02385	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CJD35_RS02390	COG2824	Alkylphosphonate utilization operon protein PhnA
CJD35_RS02400	COG1966	Carbon starvation protein
CJD35_RS02405	COG2879	small protein
CJD35_RS02410	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CJD35_RS02450	COG0693	protein deglycase activity
CJD35_RS02465	COG4948	Mandelate Racemase Muconate Lactonizing
CJD35_RS02470	COG1132	(ABC) transporter
CJD35_RS02515	COG1494	fructose-1,6-bisphosphatase
CJD35_RS02530	COG0753	catalase activity
CJD35_RS02535	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CJD35_RS02545	COG3243	poly(R)-hydroxyalkanoic acid synthase
CJD35_RS02550	COG0436	Aminotransferase
CJD35_RS02565	COG4251	negative regulation of phosphorylation
CJD35_RS02590	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
CJD35_RS02635	COG2176	DNA-directed DNA polymerase activity
CJD35_RS02695	COG3328	transposase activity
CJD35_RS02705	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJD35_RS02725	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS02745	COG4191	Histidine kinase
CJD35_RS02745	COG0784	Response regulator, receiver
CJD35_RS02750	COG0028	Belongs to the TPP enzyme family
CJD35_RS02780	COG4221	oxidoreductase activity
CJD35_RS02855	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJD35_RS02860	COG0745	RESPONSE REGULATOR receiver
CJD35_RS02875	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CJD35_RS02880	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJD35_RS02885	COG0741	lytic transglycosylase activity
CJD35_RS02905	COG2326	polyphosphate kinase activity
CJD35_RS02910	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CJD35_RS02915	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CJD35_RS02930	COG1253	flavin adenine dinucleotide binding
CJD35_RS02935	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJD35_RS02940	COG2755	lipolytic protein G-D-S-L family
CJD35_RS02940	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CJD35_RS02955	COG1301	dicarboxylic acid transport
CJD35_RS02970	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CJD35_RS02990	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CJD35_RS02995	COG0408	coproporphyrinogen oxidase activity
CJD35_RS03010	COG0321	lipoyl(octanoyl) transferase activity
CJD35_RS03025	COG0602	queuosine metabolic process
CJD35_RS03030	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJD35_RS03045	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJD35_RS03050	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJD35_RS03075	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJD35_RS03080	COG1684	flagellar biosynthetic protein fliR
CJD35_RS03085	COG1987	bacterial-type flagellum assembly
CJD35_RS03135	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJD35_RS03145	COG1677	Flagellar hook-basal body complex protein FliE
CJD35_RS03160	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJD35_RS03175	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJD35_RS03205	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CJD35_RS03215	COG1558	bacterial-type flagellum-dependent cell motility
CJD35_RS03220	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJD35_RS03225	COG4786	Flagellar basal body rod
CJD35_RS03230	COG4787	bacterial-type flagellum-dependent cell motility
CJD35_RS03245	COG1706	bacterial-type flagellum-dependent cell motility
CJD35_RS03270	COG1360	Flagellar Motor Protein
CJD35_RS03275	COG0545	Peptidyl-prolyl cis-trans isomerase
CJD35_RS03280	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJD35_RS03285	COG0235	Class ii aldolase
CJD35_RS03290	COG2319	Wd-40 repeat
CJD35_RS03310	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJD35_RS03385	COG2239	Acts as a magnesium transporter
CJD35_RS03410	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CJD35_RS03425	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJD35_RS03430	COG0776	regulation of translation
CJD35_RS03435	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJD35_RS03440	COG0416	fatty acid biosynthetic process
CJD35_RS03445	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJD35_RS03455	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJD35_RS03465	COG0584	glycerophosphoryl diester phosphodiesterase
CJD35_RS03470	COG1393	Belongs to the ArsC family
CJD35_RS03520	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD35_RS03520	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD35_RS03530	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJD35_RS03530	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CJD35_RS03570	COG0556	nucleotide-excision repair
CJD35_RS03575	COG5265	(ABC) transporter
CJD35_RS03625	COG0275	rRNA processing
CJD35_RS03630	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJD35_RS03635	COG0583	DNA-binding transcription factor activity
CJD35_RS03650	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJD35_RS03665	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CJD35_RS03680	COG0072	phenylalanine-tRNA ligase activity
CJD35_RS03685	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJD35_RS03695	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJD35_RS03700	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJD35_RS03730	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJD35_RS03755	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJD35_RS03760	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CJD35_RS03770	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD35_RS03785	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJD35_RS03790	COG4152	abc transporter atp-binding protein
CJD35_RS03800	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJD35_RS03815	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
CJD35_RS03825	COG0138	bifunctional purine biosynthesis protein purh
CJD35_RS03870	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJD35_RS03875	COG0629	single-stranded DNA binding
CJD35_RS03900	COG1902	pentaerythritol trinitrate reductase activity
CJD35_RS03905	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJD35_RS03910	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJD35_RS03910	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJD35_RS03920	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJD35_RS03920	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJD35_RS03935	COG2733	membrane
CJD35_RS03945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD35_RS03950	COG2261	transglycosylase associated protein
CJD35_RS03975	COG0482	sulfurtransferase activity
CJD35_RS03985	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CJD35_RS03990	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CJD35_RS03995	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJD35_RS04025	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJD35_RS04035	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJD35_RS04040	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJD35_RS04045	COG0424	maF-like protein
CJD35_RS04055	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CJD35_RS04065	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJD35_RS04085	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJD35_RS04100	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CJD35_RS04125	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJD35_RS04130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJD35_RS04135	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
CJD35_RS04150	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CJD35_RS04165	COG5001	Diguanylate cyclase
CJD35_RS04175	COG2201	protein-glutamate methylesterase activity
CJD35_RS04195	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CJD35_RS04230	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CJD35_RS04235	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJD35_RS04250	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CJD35_RS04260	COG4771	TonB-dependent receptor
CJD35_RS04275	COG2813	Specifically methylates the guanine in position
CJD35_RS04275	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJD35_RS04280	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJD35_RS04285	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJD35_RS04290	COG0287	Prephenate dehydrogenase
CJD35_RS04310	COG2884	Cell division ATP-binding protein ftsE
CJD35_RS04320	COG1741	Belongs to the pirin family
CJD35_RS04340	COG0443	Heat shock 70 kDa protein
CJD35_RS04370	COG0783	Belongs to the Dps family
CJD35_RS04375	COG2119	membrane
CJD35_RS04385	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJD35_RS04425	COG2814	Major facilitator Superfamily
CJD35_RS04430	COG0531	amino acid
CJD35_RS04435	COG1496	oxidoreductase activity
CJD35_RS04455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD35_RS04460	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
CJD35_RS04490	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS04495	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CJD35_RS04495	COG2755	lipolytic protein G-D-S-L family
CJD35_RS04510	COG0477	Major facilitator Superfamily
CJD35_RS04520	COG0527	aspartate kinase activity
CJD35_RS04525	COG5285	phytanoyl-CoA dioxygenase
CJD35_RS04530	COG1917	Cupin 2, conserved barrel domain protein
CJD35_RS04535	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CJD35_RS04550	COG2207	Transcriptional regulator
CJD35_RS04555	COG0667	Aldo Keto reductase
CJD35_RS04590	COG2244	polysaccharide biosynthetic process
CJD35_RS04595	COG0517	IMP dehydrogenase activity
CJD35_RS04625	COG2890	protein-(glutamine-N5) methyltransferase activity
CJD35_RS04630	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CJD35_RS04635	COG0124	histidyl-tRNA synthetase
CJD35_RS04645	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJD35_RS04650	COG0405	Gamma-glutamyltransferase
CJD35_RS04695	COG1842	Phage shock protein A
CJD35_RS04700	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CJD35_RS04705	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJD35_RS04710	COG0824	Thioesterase
CJD35_RS04730	COG0823	Involved in the tonB-independent uptake of proteins
CJD35_RS04735	COG2885	chlorophyll binding
CJD35_RS04750	COG0612	Peptidase, M16
CJD35_RS04755	COG0542	response to heat
CJD35_RS04795	COG1570	exodeoxyribonuclease VII activity
CJD35_RS04800	COG0151	Belongs to the GarS family
CJD35_RS04805	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJD35_RS04805	COG3743	rRNA binding
CJD35_RS04815	COG0483	inositol monophosphate 1-phosphatase activity
CJD35_RS04820	COG0312	modulator of DNA gyrase
CJD35_RS04825	COG2816	NAD+ diphosphatase activity
CJD35_RS04830	COG1194	a g-specific adenine glycosylase
CJD35_RS04865	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJD35_RS04905	COG0632	four-way junction helicase activity
CJD35_RS04915	COG2255	four-way junction helicase activity
CJD35_RS04935	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJD35_RS04955	COG0596	Alpha beta hydrolase
CJD35_RS04965	COG0582	viral genome integration into host DNA
CJD35_RS04990	COG0823	Involved in the tonB-independent uptake of proteins
CJD35_RS04990	COG1506	peptidase
CJD35_RS05030	COG0657	acetylesterase activity
CJD35_RS05035	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS05090	COG3916	Acyl-homoserine-lactone synthase
CJD35_RS05095	COG2771	luxR family
CJD35_RS05110	COG1401	restriction endodeoxyribonuclease activity
CJD35_RS05125	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CJD35_RS05150	COG4227	nucleotidyltransferase activity
CJD35_RS05160	COG1475	DNA binding
CJD35_RS05190	COG0739	heme binding
CJD35_RS05190	COG0741	lytic transglycosylase activity
CJD35_RS05190	COG1196	nuclear chromosome segregation
CJD35_RS05215	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CJD35_RS05250	COG3177	Filamentation induced by cAMP protein fic
CJD35_RS05275	COG4962	Type ii secretion system protein e
CJD35_RS05280	COG3838	Conjugal transfer protein Trbc
CJD35_RS05290	COG3451	type IV secretory pathway VirB4
CJD35_RS05300	COG3846	protein secretion by the type IV secretion system
CJD35_RS05315	COG2948	multi-organism process
CJD35_RS05380	COG0582	viral genome integration into host DNA
CJD35_RS05425	COG0443	Heat shock 70 kDa protein
CJD35_RS05470	COG0798	PFAM Bile acid sodium symporter
CJD35_RS05475	COG1393	Belongs to the ArsC family
CJD35_RS05495	COG0701	Predicted permease
CJD35_RS05505	COG2072	flavoprotein involved in K transport
CJD35_RS05510	COG0582	viral genome integration into host DNA
CJD35_RS05525	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CJD35_RS05565	COG3509	depolymerase
CJD35_RS05565	COG3693	PFAM glycoside hydrolase, family 10
CJD35_RS05570	COG1482	cell wall glycoprotein biosynthetic process
CJD35_RS05610	COG1674	ftsk spoiiie
CJD35_RS05625	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJD35_RS05630	COG2067	long-chain fatty acid transport protein
CJD35_RS05645	COG1192	Involved in chromosome partitioning
CJD35_RS05650	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CJD35_RS05655	COG1981	membrane
CJD35_RS05660	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CJD35_RS05665	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CJD35_RS05670	COG0424	maF-like protein
CJD35_RS05675	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJD35_RS05680	COG0237	dephospho-CoA kinase activity
CJD35_RS05690	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CJD35_RS05695	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD35_RS05725	COG1999	signal sequence binding
CJD35_RS05730	COG2983	Belongs to the UPF0260 family
CJD35_RS05755	COG4771	TonB-dependent receptor
CJD35_RS05760	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJD35_RS05770	COG2827	Endonuclease containing a URI domain
CJD35_RS05785	COG0495	leucyl-tRNA aminoacylation
CJD35_RS05810	COG0644	oxidoreductase
CJD35_RS05815	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJD35_RS05830	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJD35_RS05835	COG0861	Integral membrane protein TerC family
CJD35_RS05855	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CJD35_RS05860	COG0445	tRNA wobble uridine modification
CJD35_RS05865	COG0357	Ribosomal RNA small subunit methyltransferase G
CJD35_RS05880	COG0308	aminopeptidase N
CJD35_RS05900	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CJD35_RS05935	COG0281	malic enzyme
CJD35_RS05935	COG0280	phosphate acetyltransferase
CJD35_RS05940	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CJD35_RS05945	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CJD35_RS05960	COG1127	ABC transporter
CJD35_RS05965	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJD35_RS05980	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJD35_RS05990	COG1201	RNA secondary structure unwinding
CJD35_RS06020	COG2364	Membrane
CJD35_RS06025	COG0436	Aminotransferase
CJD35_RS06030	COG0167	dihydroorotate dehydrogenase activity
CJD35_RS06045	COG0719	Fe-S assembly protein
CJD35_RS06060	COG0396	ATPase activity
CJD35_RS06065	COG0719	Fe-S assembly protein
CJD35_RS06070	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJD35_RS06075	COG2151	metal-sulfur cluster biosynthetic enzyme
CJD35_RS06080	COG0316	Belongs to the HesB IscA family
CJD35_RS06100	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CJD35_RS06110	COG0793	Belongs to the peptidase S41A family
CJD35_RS06120	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CJD35_RS06125	COG0799	negative regulation of ribosome biogenesis
CJD35_RS06130	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CJD35_RS06160	COG2205	protein histidine kinase activity
CJD35_RS06160	COG2202	Pas domain
CJD35_RS06175	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS06205	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJD35_RS06210	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CJD35_RS06215	COG2080	2 iron, 2 sulfur cluster binding
CJD35_RS06245	COG4771	TonB-dependent receptor
CJD35_RS06250	COG0511	ligase activity, forming carbon-carbon bonds
CJD35_RS06255	COG0439	Biotin carboxylase
CJD35_RS06265	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJD35_RS06270	COG1024	Enoyl-CoA hydratase
CJD35_RS06275	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJD35_RS06290	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CJD35_RS06300	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CJD35_RS06305	COG1024	Enoyl-CoA hydratase
CJD35_RS06315	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06345	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06350	COG0183	Belongs to the thiolase family
CJD35_RS06360	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS06385	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJD35_RS06390	COG1024	Enoyl-CoA hydratase
CJD35_RS06395	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS06400	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS06425	COG5016	pyruvate
CJD35_RS06425	COG0511	ligase activity, forming carbon-carbon bonds
CJD35_RS06445	COG4993	Dehydrogenase
CJD35_RS06450	COG0583	DNA-binding transcription factor activity
CJD35_RS06455	COG0702	epimerase
CJD35_RS06460	COG1733	regulation of RNA biosynthetic process
CJD35_RS06470	COG2249	NAD(P)H dehydrogenase (quinone) activity
CJD35_RS06500	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS06510	COG4569	acetaldehyde dehydrogenase (acetylating) activity
CJD35_RS06535	COG0596	Alpha beta hydrolase
CJD35_RS06540	COG0596	Alpha beta hydrolase
CJD35_RS06550	COG1484	DNA-dependent DNA replication
CJD35_RS06555	COG4584	PFAM Integrase catalytic
CJD35_RS06565	COG0457	Tetratricopeptide repeat
CJD35_RS06575	COG0489	protein tyrosine kinase activity
CJD35_RS06590	COG1215	transferase activity, transferring glycosyl groups
CJD35_RS06600	COG1596	polysaccharide export
CJD35_RS06655	COG0730	response to heat
CJD35_RS06675	COG1862	Preprotein translocase
CJD35_RS06685	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJD35_RS06700	COG2119	membrane
CJD35_RS06710	COG1968	undecaprenyl-diphosphatase activity
CJD35_RS06755	COG0798	PFAM Bile acid sodium symporter
CJD35_RS06775	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CJD35_RS06780	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJD35_RS06785	COG0202	RNA polymerase activity
CJD35_RS06790	COG0203	ribosomal protein L17
CJD35_RS06795	COG1505	serine-type exopeptidase activity
CJD35_RS06815	COG0519	Catalyzes the synthesis of GMP from XMP
CJD35_RS06815	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJD35_RS06830	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS06835	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06845	COG1024	Enoyl-CoA hydratase
CJD35_RS06855	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS06865	COG4771	TonB-dependent receptor
CJD35_RS06870	COG2814	Major facilitator Superfamily
CJD35_RS06880	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06890	COG0183	Belongs to the thiolase family
CJD35_RS06895	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS06900	COG0183	Belongs to the thiolase family
CJD35_RS06920	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06930	COG0300	oxidoreductase activity
CJD35_RS06935	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS06955	COG1024	Enoyl-CoA hydratase
CJD35_RS06960	COG3328	transposase activity
CJD35_RS06975	COG1322	Protein conserved in bacteria
CJD35_RS06995	COG2897	thiosulfate sulfurtransferase activity
CJD35_RS07005	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJD35_RS07030	COG1297	OPT oligopeptide transporter protein
CJD35_RS07065	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
CJD35_RS07070	COG0302	gtp cyclohydrolase
CJD35_RS07075	COG4566	intracellular signal transduction
CJD35_RS07095	COG2171	N-acyltransferase activity
CJD35_RS07105	COG1611	Belongs to the LOG family
CJD35_RS07115	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJD35_RS07120	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJD35_RS07125	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CJD35_RS07135	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJD35_RS07150	COG1301	dicarboxylic acid transport
CJD35_RS07155	COG3781	membrane
CJD35_RS07160	COG1301	dicarboxylic acid transport
CJD35_RS07165	COG0259	pyridoxamine-phosphate oxidase activity
CJD35_RS07175	COG0484	heat shock protein binding
CJD35_RS07180	COG1295	ribonuclease BN
CJD35_RS07185	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CJD35_RS07200	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJD35_RS07220	COG3273	potassium ion transport
CJD35_RS07220	COG0471	metal ion transport
CJD35_RS07245	COG2827	Endonuclease containing a URI domain
CJD35_RS07250	COG0514	ATP-dependent DNA helicase (RecQ)
CJD35_RS07270	COG1230	cation diffusion facilitator family transporter
CJD35_RS07300	COG0004	ammonium transporteR
CJD35_RS07305	COG0347	Belongs to the P(II) protein family
CJD35_RS07315	COG0312	modulator of DNA gyrase
CJD35_RS07335	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CJD35_RS07355	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJD35_RS07360	COG1137	ATPase activity
CJD35_RS07365	COG1522	sequence-specific DNA binding
CJD35_RS07370	COG3186	Phenylalanine-4-hydroxylase
CJD35_RS07380	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CJD35_RS07385	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJD35_RS07395	COG3940	Belongs to the glycosyl hydrolase 43 family
CJD35_RS07405	COG3534	alpha-L-arabinofuranosidase
CJD35_RS07420	COG2186	Transcriptional regulator
CJD35_RS07435	COG3386	PFAM SMP-30 Gluconolaconase
CJD35_RS07440	COG0488	(ABC) transporter
CJD35_RS07450	COG0215	cysteine-tRNA ligase activity
CJD35_RS07455	COG0670	Belongs to the BI1 family
CJD35_RS07470	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJD35_RS07470	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJD35_RS07475	COG2367	Beta-lactamase
CJD35_RS07495	COG1131	(ABC) transporter
CJD35_RS07500	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJD35_RS07505	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJD35_RS07520	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CJD35_RS07525	COG0248	Ppx GppA phosphatase
CJD35_RS07535	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJD35_RS07550	COG1872	DUF167
CJD35_RS07555	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJD35_RS07565	COG2095	MarC family integral membrane protein
CJD35_RS07575	COG1253	flavin adenine dinucleotide binding
CJD35_RS07590	COG3474	cytochrome
CJD35_RS07595	COG0077	Prephenate dehydratase
CJD35_RS07595	COG1605	Chorismate mutase
CJD35_RS07620	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJD35_RS07625	COG2835	tetraacyldisaccharide 4'-kinase activity
CJD35_RS07645	COG0165	Argininosuccinate lyase
CJD35_RS07655	COG0019	diaminopimelate decarboxylase activity
CJD35_RS07660	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJD35_RS07660	COG1648	precorrin-2 dehydrogenase activity
CJD35_RS07680	COG0745	RESPONSE REGULATOR receiver
CJD35_RS07690	COG1538	Outer membrane efflux protein
CJD35_RS07700	COG2814	Major facilitator Superfamily
CJD35_RS07705	COG0746	molybdenum cofactor guanylyltransferase activity
CJD35_RS07725	COG3383	formate dehydrogenase (NAD+) activity
CJD35_RS07740	COG4206	TonB-dependent receptor
CJD35_RS07750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJD35_RS07755	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CJD35_RS07765	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CJD35_RS07770	COG0792	nuclease activity
CJD35_RS07775	COG0189	ligase activity
CJD35_RS07780	COG0586	Pfam SNARE associated Golgi protein
CJD35_RS07785	COG4974	Belongs to the 'phage' integrase family
CJD35_RS07795	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CJD35_RS07815	COG4166	transmembrane transport
CJD35_RS07820	COG2205	protein histidine kinase activity
CJD35_RS07825	COG0745	RESPONSE REGULATOR receiver
CJD35_RS07830	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CJD35_RS07855	COG0840	transmembrane signaling receptor activity
CJD35_RS07865	COG0330	HflC and HflK could
CJD35_RS07870	COG2301	Belongs to the HpcH HpaI aldolase family
CJD35_RS07880	COG0392	lysyltransferase activity
CJD35_RS07880	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CJD35_RS07900	COG0745	RESPONSE REGULATOR receiver
CJD35_RS07905	COG2205	protein histidine kinase activity
CJD35_RS07915	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJD35_RS07920	COG3119	arylsulfatase activity
CJD35_RS07925	COG3119	arylsulfatase activity
CJD35_RS07930	COG3119	arylsulfatase activity
CJD35_RS07935	COG2814	Major facilitator Superfamily
CJD35_RS07940	COG4771	TonB-dependent receptor
CJD35_RS07970	COG3119	arylsulfatase activity
CJD35_RS07985	COG1609	Transcriptional regulator
CJD35_RS07990	COG3119	arylsulfatase activity
CJD35_RS08000	COG3119	arylsulfatase activity
CJD35_RS08005	COG0583	DNA-binding transcription factor activity
CJD35_RS08015	COG0251	oxidation-reduction process
CJD35_RS08025	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJD35_RS08045	COG4771	TonB-dependent receptor
CJD35_RS08060	COG0686	Belongs to the AlaDH PNT family
CJD35_RS08070	COG0745	RESPONSE REGULATOR receiver
CJD35_RS08090	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJD35_RS08095	COG1758	RNA polymerase activity
CJD35_RS08105	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CJD35_RS08140	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CJD35_RS08140	COG0517	IMP dehydrogenase activity
CJD35_RS08145	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJD35_RS08150	COG0406	alpha-ribazole phosphatase activity
CJD35_RS08170	COG1278	Cold shock
CJD35_RS08180	COG1396	sequence-specific DNA binding
CJD35_RS08180	COG3800	Transcriptional regulator
CJD35_RS08190	COG0306	phosphate transporter
CJD35_RS08195	COG1392	Phosphate transport regulator
CJD35_RS08200	COG0583	DNA-binding transcription factor activity
CJD35_RS08225	COG0137	argininosuccinate synthase activity
CJD35_RS08245	COG2205	protein histidine kinase activity
CJD35_RS08250	COG0628	permease
CJD35_RS08255	COG0681	Belongs to the peptidase S26 family
CJD35_RS08260	COG0736	holo-[acyl-carrier-protein] synthase activity
CJD35_RS08265	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CJD35_RS08270	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CJD35_RS08280	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJD35_RS08285	COG0109	protoheme IX farnesyltransferase activity
CJD35_RS08290	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CJD35_RS08330	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CJD35_RS08350	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CJD35_RS08355	COG0564	pseudouridine synthase activity
CJD35_RS08360	COG0546	phosphoglycolate phosphatase activity
CJD35_RS08395	COG0123	including yeast histone deacetylase and acetoin utilization protein
CJD35_RS08405	COG0140	phosphoribosyl-ATP diphosphatase activity
CJD35_RS08415	COG0107	imidazoleglycerol-phosphate synthase activity
CJD35_RS08420	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CJD35_RS08425	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CJD35_RS08430	COG0131	Imidazoleglycerol-phosphate dehydratase
CJD35_RS08460	COG0114	fumarate hydratase activity
CJD35_RS08475	COG0194	GDP metabolic process
CJD35_RS08485	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CJD35_RS08495	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CJD35_RS08515	COG0739	heme binding
CJD35_RS08520	COG5001	Diguanylate cyclase
CJD35_RS08520	COG3300	MHYT domain
CJD35_RS08525	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJD35_RS08530	COG0049	tRNA binding
CJD35_RS08535	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CJD35_RS08540	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJD35_RS08545	COG0051	transcription antitermination factor activity, RNA binding
CJD35_RS08550	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJD35_RS08555	COG0088	Forms part of the polypeptide exit tunnel
CJD35_RS08560	COG0089	rRNA binding
CJD35_RS08565	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CJD35_RS08570	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJD35_RS08575	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CJD35_RS08580	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJD35_RS08585	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJD35_RS08590	COG0255	Belongs to the universal ribosomal protein uL29 family
CJD35_RS08595	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJD35_RS08600	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJD35_RS08605	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJD35_RS08610	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJD35_RS08615	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJD35_RS08620	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJD35_RS08625	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJD35_RS08630	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJD35_RS08635	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJD35_RS08640	COG1841	ribosomal large subunit assembly
CJD35_RS08645	COG0200	Binds to the 23S rRNA
CJD35_RS08650	COG0201	protein transport
CJD35_RS08655	COG0563	adenylate kinase activity
CJD35_RS08675	COG0481	GTPase activity
CJD35_RS08685	COG1192	Involved in chromosome partitioning
CJD35_RS08695	COG3328	transposase activity
CJD35_RS08755	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CJD35_RS08800	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJD35_RS08810	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJD35_RS08815	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CJD35_RS08825	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CJD35_RS08835	COG0756	dUTP diphosphatase activity
CJD35_RS08840	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CJD35_RS08855	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CJD35_RS08860	COG2226	methyltransferase
CJD35_RS08865	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CJD35_RS08870	COG0268	Binds directly to 16S ribosomal RNA
CJD35_RS08875	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJD35_RS08885	COG1301	dicarboxylic acid transport
CJD35_RS08895	COG0180	Tryptophanyl-tRNA synthetase
CJD35_RS08905	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CJD35_RS08930	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJD35_RS08940	COG1619	proteins homologs of microcin C7 resistance protein MccF
CJD35_RS08950	COG0175	sulfate reduction
CJD35_RS08960	COG1218	3'(2'),5'-bisphosphate nucleotidase
CJD35_RS08975	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJD35_RS09000	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS09005	COG5001	Diguanylate cyclase
CJD35_RS09010	COG1192	Involved in chromosome partitioning
CJD35_RS09020	COG0439	Biotin carboxylase
CJD35_RS09025	COG0511	ligase activity, forming carbon-carbon bonds
CJD35_RS09035	COG2022	thiamine diphosphate biosynthetic process
CJD35_RS09055	COG0537	adenosine 5'-monophosphoramidase activity
CJD35_RS09060	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS09075	COG0725	ABC transporter, periplasmic molybdate-binding protein
CJD35_RS09085	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS09100	COG0494	nUDIX hydrolase
CJD35_RS09120	COG1970	mechanosensitive ion channel activity
CJD35_RS09130	COG2198	Histidine kinase
CJD35_RS09130	COG0784	Response regulator, receiver
CJD35_RS09130	COG0643	Histidine kinase
CJD35_RS09140	COG0745	RESPONSE REGULATOR receiver
CJD35_RS09145	COG2201	protein-glutamate methylesterase activity
CJD35_RS09150	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJD35_RS09155	COG3023	N-Acetylmuramoyl-L-alanine amidase
CJD35_RS09165	COG0484	heat shock protein binding
CJD35_RS09180	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJD35_RS09190	COG0552	protein localization to endoplasmic reticulum
CJD35_RS09195	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJD35_RS09200	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CJD35_RS09210	COG0531	amino acid
CJD35_RS09220	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJD35_RS09225	COG0228	four-way junction DNA binding
CJD35_RS09230	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJD35_RS09250	COG0336	Belongs to the RNA methyltransferase TrmD family
CJD35_RS09255	COG0335	large ribosomal subunit rRNA binding
CJD35_RS09275	COG0477	Major facilitator Superfamily
CJD35_RS09280	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJD35_RS09285	COG0628	permease
CJD35_RS09290	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD35_RS09295	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD35_RS09295	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD35_RS09300	COG1660	Displays ATPase and GTPase activities
CJD35_RS09305	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CJD35_RS09315	COG0222	ribosome binding
CJD35_RS09320	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CJD35_RS09330	COG1733	regulation of RNA biosynthetic process
CJD35_RS09335	COG3275	phosphorelay sensor kinase activity
CJD35_RS09340	COG3279	Response regulator of the LytR AlgR family
CJD35_RS09360	COG0590	tRNA wobble adenosine to inosine editing
CJD35_RS09370	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJD35_RS09405	COG1410	methionine synthase
CJD35_RS09405	COG0646	methionine synthase
CJD35_RS09410	COG0646	methionine synthase
CJD35_RS09410	COG1410	methionine synthase
CJD35_RS09415	COG3128	pkhd-type hydroxylase
CJD35_RS09420	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJD35_RS09425	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJD35_RS09445	COG0037	tRNA processing
CJD35_RS09465	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CJD35_RS09475	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CJD35_RS09480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJD35_RS09485	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJD35_RS09490	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CJD35_RS09495	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJD35_RS09505	COG0105	UTP biosynthetic process
CJD35_RS09595	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJD35_RS09615	COG0525	valine-tRNA ligase activity
CJD35_RS09620	COG0534	Mate efflux family protein
CJD35_RS09630	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CJD35_RS09635	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJD35_RS09650	COG1160	GTP binding
CJD35_RS09655	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJD35_RS09665	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CJD35_RS09670	COG4771	TonB-dependent receptor
CJD35_RS09690	COG1764	response to oxidative stress
CJD35_RS09695	COG0697	spore germination
CJD35_RS09715	COG0463	Glycosyl transferase, family 2
CJD35_RS09720	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJD35_RS09735	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJD35_RS09740	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJD35_RS09745	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CJD35_RS09750	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CJD35_RS09755	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJD35_RS09765	COG2169	Transcriptional regulator
CJD35_RS09765	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJD35_RS09790	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CJD35_RS09805	COG0101	tRNA pseudouridine synthase activity
CJD35_RS09810	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJD35_RS09815	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CJD35_RS09820	COG0242	peptide deformylase activity
CJD35_RS09825	COG0745	RESPONSE REGULATOR receiver
CJD35_RS09830	COG0704	Plays a role in the regulation of phosphate uptake
CJD35_RS09835	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CJD35_RS09845	COG0573	inorganic phosphate transmembrane transporter activity
CJD35_RS09855	COG5002	protein histidine kinase activity
CJD35_RS09895	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS09925	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJD35_RS09930	COG2833	Protein of unknown function (DUF455)
CJD35_RS09935	COG0741	lytic transglycosylase activity
CJD35_RS09935	COG0739	heme binding
CJD35_RS09935	COG1196	nuclear chromosome segregation
CJD35_RS09940	COG0316	Belongs to the HesB IscA family
CJD35_RS09980	COG0456	acetyltransferase
CJD35_RS09990	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJD35_RS10000	COG2226	methyltransferase
CJD35_RS10010	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CJD35_RS10015	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD35_RS10095	COG0598	Magnesium transport protein CorA
CJD35_RS10130	COG2205	protein histidine kinase activity
CJD35_RS10145	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CJD35_RS10150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD35_RS10155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJD35_RS10160	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
CJD35_RS10175	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CJD35_RS10180	COG0252	asparaginase activity
CJD35_RS10190	COG1329	Transcriptional regulator
CJD35_RS10195	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJD35_RS10210	COG0739	heme binding
CJD35_RS10220	COG3300	MHYT domain
CJD35_RS10220	COG5001	Diguanylate cyclase
CJD35_RS10240	COG3237	CsbD-like
CJD35_RS10245	COG1115	amino acid carrier protein
CJD35_RS10250	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJD35_RS10255	COG3813	Protein conserved in bacteria
CJD35_RS10260	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CJD35_RS10260	COG0352	thiamine-phosphate diphosphorylase activity
CJD35_RS10260	COG0351	phosphomethylpyrimidine kinase
CJD35_RS10265	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJD35_RS10300	COG1309	transcriptional regulator
CJD35_RS10305	COG0328	RNA-DNA hybrid ribonuclease activity
CJD35_RS10310	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CJD35_RS10315	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CJD35_RS10350	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CJD35_RS10355	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CJD35_RS10360	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJD35_RS10365	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJD35_RS10370	COG0805	protein transport
CJD35_RS10380	COG3409	Peptidoglycan-binding domain 1 protein
CJD35_RS10380	COG3773	Cell wall hydrolase
CJD35_RS10385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJD35_RS10405	COG0275	rRNA processing
CJD35_RS10420	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJD35_RS10430	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJD35_RS10435	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJD35_RS10445	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CJD35_RS10450	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJD35_RS10460	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CJD35_RS10465	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJD35_RS10470	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CJD35_RS10475	COG0849	cell division
CJD35_RS10480	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CJD35_RS10490	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CJD35_RS10495	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CJD35_RS10500	COG0509	glycine decarboxylation via glycine cleavage system
CJD35_RS10505	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJD35_RS10510	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJD35_RS10530	COG0156	8-amino-7-oxononanoate synthase activity
CJD35_RS10545	COG1643	Atp-dependent helicase
CJD35_RS10550	COG4191	Histidine kinase
CJD35_RS10550	COG0784	Response regulator, receiver
CJD35_RS10560	COG0142	geranyltranstransferase activity
CJD35_RS10565	COG1605	Chorismate mutase
CJD35_RS10565	COG0287	Prephenate dehydrogenase
CJD35_RS10575	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD35_RS10580	COG4133	protoheme IX ABC transporter activity
CJD35_RS10590	COG2154	pterin-4-alpha-carbinolamine dehydratase
CJD35_RS10600	COG1752	Esterase of the alpha-beta hydrolase superfamily
CJD35_RS10600	COG1752	Esterase of the alpha-beta hydrolase superfamily
CJD35_RS10620	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD35_RS10625	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CJD35_RS10630	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CJD35_RS10660	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJD35_RS10665	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJD35_RS10675	COG4651	solute:proton antiporter activity
CJD35_RS10675	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJD35_RS10680	COG3046	protein related to deoxyribodipyrimidine photolyase
CJD35_RS10690	COG0081	regulation of translation
CJD35_RS10695	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJD35_RS10700	COG0250	Participates in transcription elongation, termination and antitermination
CJD35_RS10715	COG1295	ribonuclease BN
CJD35_RS10720	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CJD35_RS10725	COG0540	Belongs to the ATCase OTCase family
CJD35_RS10740	COG0385	Bile acid
CJD35_RS10760	COG1846	Transcriptional regulator
CJD35_RS10800	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJD35_RS10820	COG2972	Histidine kinase
CJD35_RS10840	COG0363	glucosamine-6-phosphate deaminase activity
CJD35_RS10855	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJD35_RS10855	COG1024	Enoyl-CoA hydratase
CJD35_RS10860	COG0183	Belongs to the thiolase family
CJD35_RS10865	COG2814	Major facilitator Superfamily
CJD35_RS10875	COG0302	gtp cyclohydrolase
CJD35_RS10880	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS10885	COG1024	Enoyl-CoA hydratase
CJD35_RS10905	COG1024	Enoyl-CoA hydratase
CJD35_RS10935	COG1131	(ABC) transporter
CJD35_RS10940	COG0842	Transport permease protein
CJD35_RS10950	COG0534	Mate efflux family protein
CJD35_RS10955	COG2354	Protein conserved in bacteria
CJD35_RS10970	COG0640	Transcriptional regulator
CJD35_RS10975	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CJD35_RS10980	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJD35_RS11050	COG4964	Belongs to the GSP D family
CJD35_RS11075	COG3422	double-strand break repair
CJD35_RS11080	COG0359	binds to the 23S rRNA
CJD35_RS11085	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJD35_RS11090	COG0360	Binds together with S18 to 16S ribosomal RNA
CJD35_RS11110	COG1136	(ABC) transporter
CJD35_RS11110	COG0577	efflux transmembrane transporter activity
CJD35_RS11115	COG1136	(ABC) transporter
CJD35_RS11115	COG0577	efflux transmembrane transporter activity
CJD35_RS11130	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CJD35_RS11135	COG1024	Enoyl-CoA hydratase
CJD35_RS11150	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJD35_RS11155	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJD35_RS11160	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CJD35_RS11195	COG0582	viral genome integration into host DNA
CJD35_RS11215	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJD35_RS11245	COG1215	transferase activity, transferring glycosyl groups
CJD35_RS11255	COG0463	Glycosyl transferase, family 2
CJD35_RS11265	COG4771	TonB-dependent receptor
CJD35_RS11270	COG0583	DNA-binding transcription factor activity
CJD35_RS11275	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS11285	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CJD35_RS11290	COG2852	Protein conserved in bacteria
CJD35_RS11295	COG4770	biotin carboxylase activity
CJD35_RS11300	COG2030	dehydratase
CJD35_RS11470	COG0740	serine-type endopeptidase activity
CJD35_RS11505	COG0358	DNA primase activity
CJD35_RS11535	COG1475	DNA binding
CJD35_RS11590	COG1215	transferase activity, transferring glycosyl groups
CJD35_RS11595	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJD35_RS11610	COG0045	succinate-CoA ligase (ADP-forming) activity
CJD35_RS11615	COG2086	electron transfer activity
CJD35_RS11640	COG1278	Cold shock
CJD35_RS11655	COG2308	Evidence 4 Homologs of previously reported genes of
CJD35_RS11665	COG1305	Transglutaminase-like
CJD35_RS11675	COG0492	ferredoxin-NADP+ reductase activity
CJD35_RS11680	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJD35_RS11690	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS11695	COG0019	diaminopimelate decarboxylase activity
CJD35_RS11720	COG3267	Type II secretory pathway component ExeA
CJD35_RS11720	COG3409	Peptidoglycan-binding domain 1 protein
CJD35_RS11740	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS11750	COG0367	asparagine synthase
CJD35_RS11755	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJD35_RS11790	COG1574	metal-dependent hydrolase with the TIM-barrel fold
CJD35_RS11795	COG2084	Dehydrogenase
CJD35_RS11800	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJD35_RS11805	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJD35_RS11820	COG1956	GAF domain-containing protein
CJD35_RS11835	COG0564	pseudouridine synthase activity
CJD35_RS11845	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CJD35_RS11845	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD35_RS11850	COG2957	Belongs to the agmatine deiminase family
CJD35_RS11875	COG1741	Belongs to the pirin family
CJD35_RS11890	COG0657	acetylesterase activity
CJD35_RS11905	COG1595	DNA-templated transcription, initiation
CJD35_RS11920	COG4771	TonB-dependent receptor
CJD35_RS11925	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CJD35_RS11930	COG0717	Belongs to the dCTP deaminase family
CJD35_RS11935	COG0295	cytidine deaminase activity
CJD35_RS11940	COG3757	hydrolase, family 25
CJD35_RS11945	COG5328	Belongs to the UPF0262 family
CJD35_RS11950	COG0305	Participates in initiation and elongation during chromosome replication
CJD35_RS11960	COG0175	sulfate reduction
CJD35_RS11970	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJD35_RS11980	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJD35_RS11980	COG1648	precorrin-2 dehydrogenase activity
CJD35_RS11985	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS11990	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CJD35_RS12020	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS12075	COG0653	protein targeting
CJD35_RS12100	COG0277	FAD linked oxidase domain protein
CJD35_RS12110	COG0513	Belongs to the DEAD box helicase family
CJD35_RS12120	COG2003	Belongs to the UPF0758 family
CJD35_RS12145	COG0356	it plays a direct role in the translocation of protons across the membrane
CJD35_RS12150	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJD35_RS12160	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CJD35_RS12165	COG0322	excinuclease ABC activity
CJD35_RS12170	COG1381	Involved in DNA repair and RecF pathway recombination
CJD35_RS12175	COG0473	3-isopropylmalate dehydrogenase activity
CJD35_RS12185	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJD35_RS12195	COG2967	ApaG domain
CJD35_RS12200	COG0583	DNA-binding transcription factor activity
CJD35_RS12210	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJD35_RS12210	COG0475	glutathione-regulated potassium exporter activity
CJD35_RS12220	COG0776	regulation of translation
CJD35_RS12225	COG0539	negative regulation of cytoplasmic translation
CJD35_RS12230	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CJD35_RS12240	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJD35_RS12270	COG0210	DNA helicase
CJD35_RS12285	COG1959	2 iron, 2 sulfur cluster binding
CJD35_RS12295	COG0742	ribosomal rna small subunit methyltransferase
CJD35_RS12300	COG1187	pseudouridine synthase activity
CJD35_RS12325	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJD35_RS12330	COG0159	tryptophan synthase activity
CJD35_RS12335	COG0133	tryptophan synthase activity
CJD35_RS12340	COG0135	phosphoribosylanthranilate isomerase activity
CJD35_RS12375	COG1522	sequence-specific DNA binding
CJD35_RS12380	COG2205	protein histidine kinase activity
CJD35_RS12395	COG2207	Transcriptional regulator
CJD35_RS12415	COG0745	RESPONSE REGULATOR receiver
CJD35_RS12420	COG5002	protein histidine kinase activity
CJD35_RS12430	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJD35_RS12435	COG3047	cAMP biosynthetic process
CJD35_RS12475	COG1309	transcriptional regulator
CJD35_RS12490	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CJD35_RS12495	COG4221	oxidoreductase activity
CJD35_RS12515	COG0693	protein deglycase activity
CJD35_RS12535	COG1309	transcriptional regulator
CJD35_RS12540	COG0656	L-ascorbic acid biosynthetic process
CJD35_RS12550	COG0772	Belongs to the SEDS family
CJD35_RS12575	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJD35_RS12585	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS12585	COG2030	dehydratase
CJD35_RS12600	COG0012	GTP binding
CJD35_RS12605	COG0033	Phosphoglucomutase
CJD35_RS12610	COG0193	aminoacyl-tRNA hydrolase activity
CJD35_RS12615	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CJD35_RS12630	COG0752	glycyl-tRNA synthetase alpha subunit
CJD35_RS12635	COG0751	glycine-tRNA ligase activity
CJD35_RS12640	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJD35_RS12640	COG0574	Belongs to the PEP-utilizing enzyme family
CJD35_RS12645	COG0052	Belongs to the universal ribosomal protein uS2 family
CJD35_RS12660	COG1492	cobalamin metabolic process
CJD35_RS12685	COG3724	N-succinylarginine dihydrolase activity
CJD35_RS12690	COG3138	arginine N-succinyltransferase
CJD35_RS12705	COG1051	belongs to the nudix hydrolase family
CJD35_RS12710	COG0415	Belongs to the DNA photolyase family
CJD35_RS12715	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJD35_RS12720	COG4221	oxidoreductase activity
CJD35_RS12725	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CJD35_RS12735	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD35_RS12740	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
CJD35_RS12750	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJD35_RS12755	COG3088	subunit of a heme lyase
CJD35_RS12765	COG3158	transport of potassium into the cell
CJD35_RS12770	COG0071	Belongs to the small heat shock protein (HSP20) family
CJD35_RS12780	COG1136	(ABC) transporter
CJD35_RS12795	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJD35_RS12800	COG0741	lytic transglycosylase activity
CJD35_RS12820	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CJD35_RS12835	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJD35_RS12835	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CJD35_RS12840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJD35_RS12855	COG1748	Saccharopine dehydrogenase
CJD35_RS12860	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
CJD35_RS12865	COG1793	dna ligase
CJD35_RS12885	COG0156	8-amino-7-oxononanoate synthase activity
CJD35_RS12890	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJD35_RS12900	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CJD35_RS12910	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJD35_RS12910	COG1754	DNA topoisomerase type I activity
CJD35_RS12915	COG3706	GGDEF domain
CJD35_RS12920	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJD35_RS12925	COG0571	ribonuclease III activity
CJD35_RS12935	COG0166	Belongs to the GPI family
CJD35_RS12950	COG1396	sequence-specific DNA binding
CJD35_RS12950	COG3800	Transcriptional regulator
CJD35_RS12955	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CJD35_RS12960	COG0346	lactoylglutathione lyase activity
CJD35_RS12965	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CJD35_RS12965	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CJD35_RS12970	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJD35_RS12975	COG4770	biotin carboxylase activity
CJD35_RS13005	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
CJD35_RS13020	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CJD35_RS13025	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CJD35_RS13050	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CJD35_RS13060	COG2267	carboxylic ester hydrolase activity
CJD35_RS13075	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJD35_RS13080	COG0678	peroxiredoxin activity
CJD35_RS13080	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CJD35_RS13085	COG1678	Uncharacterized ACR, COG1678
CJD35_RS13090	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CJD35_RS13095	COG2205	protein histidine kinase activity
CJD35_RS13100	COG0802	atpase or kinase
CJD35_RS13105	COG3178	'Phosphotransferase
CJD35_RS13110	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJD35_RS13120	COG1074	ATP-dependent DNA helicase activity
CJD35_RS13130	COG0483	inositol monophosphate 1-phosphatase activity
CJD35_RS13135	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CJD35_RS13140	COG0653	protein targeting
CJD35_RS13155	COG2951	lytic endotransglycosylase activity
CJD35_RS13165	COG1686	Belongs to the peptidase S11 family
CJD35_RS13170	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CJD35_RS13175	COG0470	DNA polymerase III
CJD35_RS13185	COG0084	hydrolase, TatD family'
CJD35_RS13200	COG0477	Major facilitator Superfamily
CJD35_RS13205	COG3956	TIGRFAM MazG family protein
CJD35_RS13220	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CJD35_RS13225	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJD35_RS13235	COG0352	thiamine-phosphate diphosphorylase activity
CJD35_RS13240	COG3588	fructose-bisphosphate aldolase
CJD35_RS13245	COG0126	phosphoglycerate kinase activity
CJD35_RS13250	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJD35_RS13270	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CJD35_RS13290	COG0628	permease
CJD35_RS13315	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CJD35_RS13345	COG0714	Associated with various cellular activities
CJD35_RS13380	COG1546	Belongs to the CinA family
CJD35_RS13380	COG1058	Belongs to the CinA family
CJD35_RS13385	COG0024	Methionine aminopeptidase
CJD35_RS13390	COG0347	Belongs to the P(II) protein family
CJD35_RS13395	COG0174	glutamine synthetase
CJD35_RS13405	COG0671	phosphoesterase, PA-phosphatase related
CJD35_RS13410	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD35_RS13415	COG1607	acyl-coa hydrolase
CJD35_RS13420	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD35_RS13440	COG2258	MOSC domain
CJD35_RS13450	COG0297	glycogen (starch) synthase activity
CJD35_RS13455	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJD35_RS13610	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
CJD35_RS13640	COG1783	phage Terminase large subunit
CJD35_RS13820	COG0617	tRNA 3'-terminal CCA addition
CJD35_RS13825	COG5001	Diguanylate cyclase
CJD35_RS13830	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CJD35_RS13845	COG0583	DNA-binding transcription factor activity
CJD35_RS13860	COG3387	PFAM Glycoside hydrolase 15-related
CJD35_RS13865	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CJD35_RS13870	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJD35_RS13885	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJD35_RS13890	COG0047	phosphoribosylformylglycinamidine synthase activity
CJD35_RS13905	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CJD35_RS13915	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJD35_RS13935	COG0187	DNA topoisomerase II activity
CJD35_RS13950	COG2217	Heavy metal translocating P-type atpase
CJD35_RS13965	COG2010	Cytochrome c
CJD35_RS13985	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJD35_RS13990	COG4566	intracellular signal transduction
CJD35_RS13995	COG4191	Histidine kinase
CJD35_RS14020	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CJD35_RS14025	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CJD35_RS14035	COG0668	transmembrane transport
CJD35_RS14045	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CJD35_RS14050	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJD35_RS14075	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJD35_RS14080	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CJD35_RS14090	COG2066	Belongs to the glutaminase family
CJD35_RS14095	COG1923	regulation of RNA biosynthetic process
CJD35_RS14100	COG2204	response regulator
CJD35_RS14105	COG5000	phosphorelay sensor kinase activity
CJD35_RS14125	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJD35_RS14125	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJD35_RS14130	COG1546	Belongs to the CinA family
CJD35_RS14130	COG1058	Belongs to the CinA family
CJD35_RS14135	COG2867	negative regulation of translational initiation
CJD35_RS14140	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CJD35_RS14145	COG0288	reversible hydration of carbon dioxide
CJD35_RS14155	COG0488	(ABC) transporter
CJD35_RS14225	COG4970	Tfp pilus assembly protein FimT
CJD35_RS14290	COG0659	secondary active sulfate transmembrane transporter activity
CJD35_RS14295	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJD35_RS14300	COG0134	indole-3-glycerol-phosphate synthase activity
CJD35_RS14305	COG0315	cyclic pyranopterin monophosphate synthase activity
CJD35_RS14315	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CJD35_RS14320	COG0658	competence protein
CJD35_RS14320	COG2333	competence protein COMEC
CJD35_RS14325	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJD35_RS14330	COG0372	Belongs to the citrate synthase family
CJD35_RS14335	COG2205	protein histidine kinase activity
CJD35_RS14370	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CJD35_RS14380	COG1007	ATP synthesis coupled electron transport
CJD35_RS14395	COG0713	ATP synthesis coupled electron transport
CJD35_RS14405	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD35_RS14410	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CJD35_RS14420	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CJD35_RS14425	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CJD35_RS14430	COG0649	NAD binding
CJD35_RS14435	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD35_RS14440	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD35_RS14445	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD35_RS14450	COG0483	inositol monophosphate 1-phosphatase activity
CJD35_RS14455	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJD35_RS14460	COG0739	heme binding
CJD35_RS14475	COG0583	DNA-binding transcription factor activity
CJD35_RS14480	COG0280	phosphate acetyltransferase
CJD35_RS14480	COG0281	malic enzyme
CJD35_RS14490	COG2814	Major facilitator Superfamily
CJD35_RS14510	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJD35_RS14525	COG0776	regulation of translation
CJD35_RS14535	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJD35_RS14540	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJD35_RS14570	COG2945	thiolester hydrolase activity
CJD35_RS14580	COG0698	ribose 5-phosphate isomerase
CJD35_RS14585	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CJD35_RS14590	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CJD35_RS14605	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CJD35_RS14615	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJD35_RS14630	COG1523	belongs to the glycosyl hydrolase 13 family
CJD35_RS14640	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CJD35_RS14650	COG0058	SHG alpha-glucan phosphorylase activity
CJD35_RS14680	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJD35_RS14690	COG0154	amidase activity
CJD35_RS14695	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJD35_RS14705	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CJD35_RS14720	COG0560	Phosphoserine phosphatase
CJD35_RS14720	COG3830	Belongs to the UPF0237 family
CJD35_RS14725	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CJD35_RS14730	COG0028	Belongs to the TPP enzyme family
CJD35_RS14745	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CJD35_RS14755	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJD35_RS14765	COG1301	dicarboxylic acid transport
CJD35_RS14770	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
CJD35_RS14800	COG0022	dehydrogenase e1 component
CJD35_RS14800	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD35_RS14805	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CJD35_RS14815	COG0148	phosphopyruvate hydratase activity
CJD35_RS14850	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJD35_RS14865	COG0505	Belongs to the CarA family
CJD35_RS14870	COG1610	YqeY-like protein
CJD35_RS14875	COG2852	Protein conserved in bacteria
CJD35_RS14885	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJD35_RS14895	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJD35_RS14915	COG2175	clavaminate synthase activity
CJD35_RS14935	COG0784	Response regulator, receiver
CJD35_RS14935	COG4191	Histidine kinase
CJD35_RS14945	COG0633	Ferredoxin
CJD35_RS14970	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS14985	COG0028	Belongs to the TPP enzyme family
CJD35_RS15010	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS15020	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15030	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJD35_RS15035	COG0583	DNA-binding transcription factor activity
CJD35_RS15040	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS15045	COG4771	TonB-dependent receptor
CJD35_RS15085	COG0366	Alpha amylase catalytic
CJD35_RS15090	COG1082	Xylose isomerase domain protein TIM barrel
CJD35_RS15105	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS15110	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CJD35_RS15125	COG3547	Transposase (IS116 IS110 IS902 family)
CJD35_RS15130	COG4771	TonB-dependent receptor
CJD35_RS15165	COG1136	(ABC) transporter
CJD35_RS15185	COG0523	cobalamin synthesis protein
CJD35_RS15210	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJD35_RS15220	COG2030	dehydratase
CJD35_RS15225	COG2301	Belongs to the HpcH HpaI aldolase family
CJD35_RS15245	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CJD35_RS15255	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJD35_RS15325	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15330	COG4771	TonB-dependent receptor
CJD35_RS15340	COG2271	Major facilitator Superfamily
CJD35_RS15355	COG2814	Major facilitator Superfamily
CJD35_RS15380	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15420	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15445	COG1309	transcriptional regulator
CJD35_RS15465	COG1053	succinate dehydrogenase
CJD35_RS15475	COG1920	GTP binding
CJD35_RS15480	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CJD35_RS15485	COG0778	Nitroreductase
CJD35_RS15485	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
CJD35_RS15495	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CJD35_RS15505	COG4771	TonB-dependent receptor
CJD35_RS15510	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJD35_RS15525	COG0604	alcohol dehydrogenase
CJD35_RS15540	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15545	COG2030	dehydratase
CJD35_RS15550	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS15560	COG0183	Belongs to the thiolase family
CJD35_RS15565	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS15570	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15580	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJD35_RS15605	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS15650	COG4993	Dehydrogenase
CJD35_RS15660	COG2130	NADP-dependent
CJD35_RS15665	COG4221	oxidoreductase activity
CJD35_RS15670	COG1902	pentaerythritol trinitrate reductase activity
CJD35_RS15690	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJD35_RS15695	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15700	COG1309	transcriptional regulator
CJD35_RS15710	COG1063	alcohol dehydrogenase
CJD35_RS15725	COG2124	cytochrome p450
CJD35_RS15730	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS15775	COG0596	Alpha beta hydrolase
CJD35_RS15795	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15805	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15810	COG0625	glutathione transferase activity
CJD35_RS15820	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15855	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS15865	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJD35_RS15885	COG0667	Aldo Keto reductase
CJD35_RS15890	COG0402	S-adenosylhomocysteine deaminase activity
CJD35_RS15895	COG3547	Transposase (IS116 IS110 IS902 family)
CJD35_RS15900	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CJD35_RS15920	COG2271	Major facilitator Superfamily
CJD35_RS15925	COG4771	TonB-dependent receptor
CJD35_RS15945	COG4771	TonB-dependent receptor
CJD35_RS15960	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS15965	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS16040	COG3214	Protein conserved in bacteria
CJD35_RS16050	COG0776	regulation of translation
CJD35_RS16085	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJD35_RS16095	COG4974	Belongs to the 'phage' integrase family
CJD35_RS16100	COG0582	viral genome integration into host DNA
CJD35_RS16105	COG4974	Belongs to the 'phage' integrase family
CJD35_RS16115	COG1475	DNA binding
CJD35_RS16140	COG3001	Fructosamine kinase
CJD35_RS16155	COG0776	regulation of translation
CJD35_RS16215	COG0582	viral genome integration into host DNA
CJD35_RS16220	COG3328	transposase activity
CJD35_RS16225	COG0582	viral genome integration into host DNA
CJD35_RS16280	COG4771	TonB-dependent receptor
CJD35_RS16330	COG1024	Enoyl-CoA hydratase
CJD35_RS16350	COG0477	Major facilitator Superfamily
CJD35_RS16355	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJD35_RS16365	COG0326	Molecular chaperone. Has ATPase activity
CJD35_RS16375	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CJD35_RS16385	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CJD35_RS16395	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJD35_RS16410	COG2814	Major facilitator Superfamily
CJD35_RS16430	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS16450	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS16500	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJD35_RS16540	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD35_RS16540	COG2205	protein histidine kinase activity
CJD35_RS16545	COG4566	intracellular signal transduction
CJD35_RS16590	COG0473	3-isopropylmalate dehydrogenase activity
CJD35_RS16600	COG1522	sequence-specific DNA binding
CJD35_RS16605	COG1473	amidohydrolase
CJD35_RS16645	COG0583	DNA-binding transcription factor activity
CJD35_RS16665	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS16680	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CJD35_RS16690	COG2132	Multicopper oxidase
CJD35_RS16730	COG4181	ATPase activity
CJD35_RS16740	COG1192	Involved in chromosome partitioning
CJD35_RS16765	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS16775	COG0667	Aldo Keto reductase
CJD35_RS16790	COG5001	Diguanylate cyclase
CJD35_RS16790	COG3300	MHYT domain
CJD35_RS16795	COG3618	amidohydrolase
CJD35_RS16805	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJD35_RS16820	COG2159	amidohydrolase
CJD35_RS16850	COG2814	Major facilitator Superfamily
CJD35_RS16910	COG1566	PFAM secretion protein HlyD family protein
CJD35_RS16940	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJD35_RS16955	COG0523	cobalamin synthesis protein
CJD35_RS16960	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJD35_RS16995	COG3707	response regulator
CJD35_RS17000	COG1116	anion transmembrane transporter activity
CJD35_RS17000	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJD35_RS17005	COG2223	nitrite transmembrane transporter activity
CJD35_RS17015	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJD35_RS17025	COG0243	molybdopterin cofactor binding
CJD35_RS17030	COG1648	precorrin-2 dehydrogenase activity
CJD35_RS17030	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJD35_RS17035	COG3800	Transcriptional regulator
CJD35_RS17035	COG1396	sequence-specific DNA binding
CJD35_RS17045	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CJD35_RS17070	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CJD35_RS17085	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJD35_RS17110	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJD35_RS17115	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJD35_RS17130	COG1301	dicarboxylic acid transport
CJD35_RS17145	COG4191	Histidine kinase
CJD35_RS17150	COG2204	response regulator
CJD35_RS17155	COG1940	carbohydrate kinase activity
CJD35_RS17160	COG1621	beta-fructofuranosidase activity
CJD35_RS17175	COG1609	Transcriptional regulator
CJD35_RS17195	COG0174	glutamine synthetase
CJD35_RS17200	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CJD35_RS17215	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJD35_RS17215	COG0519	Catalyzes the synthesis of GMP from XMP
CJD35_RS17225	COG1802	Transcriptional regulator
CJD35_RS17230	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJD35_RS17255	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJD35_RS17260	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJD35_RS17290	COG1294	oxidase, subunit
CJD35_RS17295	COG1271	oxidase subunit
CJD35_RS17325	COG0450	alkyl hydroperoxide reductase
CJD35_RS17330	COG0640	Transcriptional regulator
CJD35_RS17340	COG0438	transferase activity, transferring glycosyl groups
CJD35_RS17375	COG0385	Bile acid
CJD35_RS17385	COG2252	PERMEase
CJD35_RS17405	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CJD35_RS17425	COG2072	flavoprotein involved in K transport
CJD35_RS17430	COG2351	hydroxyisourate hydrolase activity
CJD35_RS17440	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJD35_RS17445	COG3608	succinylglutamate desuccinylase aspartoacylase
CJD35_RS17445	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CJD35_RS17450	COG0402	S-adenosylhomocysteine deaminase activity
CJD35_RS17475	COG0583	DNA-binding transcription factor activity
CJD35_RS17525	COG1522	sequence-specific DNA binding
CJD35_RS17530	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJD35_RS17535	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJD35_RS17540	COG0251	oxidation-reduction process
CJD35_RS17545	COG0776	regulation of translation
CJD35_RS17550	COG0339	signal peptide processing
CJD35_RS17555	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CJD35_RS17590	COG4771	TonB-dependent receptor
CJD35_RS17615	COG0625	glutathione transferase activity
CJD35_RS17625	COG1309	transcriptional regulator
CJD35_RS17630	COG1960	acyl-CoA dehydrogenase activity
CJD35_RS17635	COG0183	Belongs to the thiolase family
CJD35_RS17645	COG1024	Enoyl-CoA hydratase
CJD35_RS17660	COG0366	Alpha amylase catalytic
CJD35_RS17675	COG3246	L-lysine catabolic process to acetate
CJD35_RS17700	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS17710	COG0625	glutathione transferase activity
CJD35_RS17715	COG4771	TonB-dependent receptor
CJD35_RS17730	COG2814	Major facilitator Superfamily
CJD35_RS17775	COG0745	RESPONSE REGULATOR receiver
CJD35_RS17830	COG4771	TonB-dependent receptor
CJD35_RS17835	COG0457	Tetratricopeptide repeat
CJD35_RS17885	COG1162	GTPase activity
CJD35_RS17890	COG2721	sulfolactate sulfo-lyase activity
CJD35_RS17925	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CJD35_RS17945	COG2267	carboxylic ester hydrolase activity
CJD35_RS17950	COG4771	TonB-dependent receptor
CJD35_RS17955	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
CJD35_RS17960	COG1285	pathogenesis
CJD35_RS17990	COG4944	Protein of unknown function (DUF1109)
CJD35_RS18000	COG3220	belongs to the UPF0276 family
CJD35_RS18015	COG0028	Belongs to the TPP enzyme family
CJD35_RS18020	COG0069	glutamate synthase activity
CJD35_RS18065	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS18075	COG4566	intracellular signal transduction
CJD35_RS18080	COG4191	Histidine kinase
CJD35_RS18105	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD35_RS18105	COG1017	nitric oxide dioxygenase activity
CJD35_RS18115	COG0589	response to stress
CJD35_RS18125	COG2111	Na H antiporter
CJD35_RS18125	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJD35_RS18130	COG1006	Multisubunit Na H antiporter MnhC subunit
CJD35_RS18140	COG1863	multisubunit Na H antiporter MnhE subunit
CJD35_RS18145	COG2212	antiporter activity
CJD35_RS18150	COG1320	monovalent cation:proton antiporter activity
CJD35_RS18155	COG5001	Diguanylate cyclase
CJD35_RS18155	COG3300	MHYT domain
CJD35_RS18180	COG1902	pentaerythritol trinitrate reductase activity
CJD35_RS18190	COG4221	oxidoreductase activity
CJD35_RS18205	COG0693	protein deglycase activity
CJD35_RS18215	COG3328	transposase activity
CJD35_RS18235	COG1309	transcriptional regulator
CJD35_RS18290	COG0484	heat shock protein binding
CJD35_RS18300	COG0183	Belongs to the thiolase family
CJD35_RS18315	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS18320	COG2080	2 iron, 2 sulfur cluster binding
CJD35_RS18325	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CJD35_RS18330	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJD35_RS18360	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CJD35_RS18370	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJD35_RS18380	COG1278	Cold shock
CJD35_RS18465	COG0784	Response regulator, receiver
CJD35_RS18490	COG0326	Molecular chaperone. Has ATPase activity
CJD35_RS18495	COG1872	DUF167
CJD35_RS18505	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJD35_RS18515	COG2205	protein histidine kinase activity
CJD35_RS18540	COG0741	lytic transglycosylase activity
CJD35_RS18665	COG0670	Belongs to the BI1 family
CJD35_RS18675	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJD35_RS18695	COG2824	Alkylphosphonate utilization operon protein PhnA
CJD35_RS18700	COG0025	NhaP-type Na H and K H
CJD35_RS18710	COG0745	RESPONSE REGULATOR receiver
CJD35_RS18720	COG1305	Transglutaminase-like
CJD35_RS18755	COG5425	PFAM Usg family protein
CJD35_RS18765	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJD35_RS18770	COG0459	protein refolding
CJD35_RS18775	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CJD35_RS18775	COG0662	Cupin 2, conserved barrel domain protein
CJD35_RS18780	COG1482	cell wall glycoprotein biosynthetic process
CJD35_RS18800	COG4191	Histidine kinase
CJD35_RS18800	COG0784	Response regulator, receiver
CJD35_RS18815	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJD35_RS18825	COG0071	Belongs to the small heat shock protein (HSP20) family
CJD35_RS18830	COG0071	Belongs to the small heat shock protein (HSP20) family
CJD35_RS18845	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJD35_RS18860	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJD35_RS18865	COG5001	Diguanylate cyclase
CJD35_RS18865	COG3300	MHYT domain
CJD35_RS18870	COG3328	transposase activity
CJD35_RS18900	COG3920	Histidine kinase
CJD35_RS18900	COG2202	Pas domain
CJD35_RS18985	COG0471	metal ion transport
CJD35_RS18985	COG0490	domain, Protein
CJD35_RS19035	COG0783	Belongs to the Dps family
CJD35_RS19100	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19200	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19205	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19210	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19220	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19225	COG0582	viral genome integration into host DNA
CJD35_RS19230	COG4974	Belongs to the 'phage' integrase family
CJD35_RS19280	COG0297	glycogen (starch) synthase activity
CJD35_RS19300	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJD35_RS19355	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS19370	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS19435	COG1846	Transcriptional regulator
CJD35_RS19455	COG1846	Transcriptional regulator
CJD35_RS19460	COG2963	transposase activity
CJD35_RS19490	COG3328	transposase activity
CJD35_RS19505	COG2207	Transcriptional regulator
CJD35_RS19510	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CJD35_RS19520	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJD35_RS19535	COG0746	molybdenum cofactor guanylyltransferase activity
CJD35_RS19545	COG3618	amidohydrolase
CJD35_RS19555	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJD35_RS19570	COG2159	amidohydrolase
CJD35_RS19600	COG0667	Aldo Keto reductase
CJD35_RS19610	COG1012	belongs to the aldehyde dehydrogenase family
CJD35_RS19615	COG1484	DNA-dependent DNA replication
CJD35_RS19620	COG4584	PFAM Integrase catalytic
CJD35_RS19630	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJD35_RS19825	COG0776	regulation of translation
CJD35_RS19835	COG3621	Patatin-like phospholipase
CJD35_RS19880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD35_RS19885	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD35_RS19890	COG0022	dehydrogenase e1 component
CJD35_RS19890	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD35_RS19895	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CJD35_RS19900	COG0583	DNA-binding transcription factor activity
CJD35_RS19985	COG2824	Alkylphosphonate utilization operon protein PhnA
CJD35_RS19990	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
CJD35_RS20000	COG0659	secondary active sulfate transmembrane transporter activity
CJD35_RS20085	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJD35_RS20100	COG4957	zinc ion binding
CJD35_RS20135	COG1475	DNA binding
CJD35_RS20170	COG1017	nitric oxide dioxygenase activity
CJD35_RS20170	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD35_RS20175	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJD35_RS20195	COG4957	zinc ion binding
CJD35_RS20280	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20360	COG4227	nucleotidyltransferase activity
CJD35_RS20375	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20380	COG4227	nucleotidyltransferase activity
CJD35_RS20395	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20400	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20405	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20415	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20420	COG0582	viral genome integration into host DNA
CJD35_RS20425	COG4974	Belongs to the 'phage' integrase family
CJD35_RS20440	COG1192	Involved in chromosome partitioning
CJD35_RS20465	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS20480	COG4771	TonB-dependent receptor
CJD35_RS20515	COG3504	Conjugal transfer protein
CJD35_RS20520	COG2948	multi-organism process
CJD35_RS20535	COG4644	lycopene metabolic process
CJD35_RS20600	COG2132	Multicopper oxidase
CJD35_RS20605	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS20615	COG0583	DNA-binding transcription factor activity
CJD35_RS20640	COG0318	PFAM AMP-dependent synthetase and ligase
CJD35_RS20645	COG3284	Transcriptional regulator
CJD35_RS20720	COG0326	Molecular chaperone. Has ATPase activity
CJD35_RS20725	COG1872	DUF167
CJD35_RS20735	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CJD35_RS20745	COG2205	protein histidine kinase activity
CJD35_RS20765	COG1024	Enoyl-CoA hydratase
CJD35_RS20775	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJD35_RS20775	COG1024	Enoyl-CoA hydratase
CJD35_RS20780	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS20790	COG4771	TonB-dependent receptor
CJD35_RS20800	COG1484	DNA-dependent DNA replication
CJD35_RS20805	COG4584	PFAM Integrase catalytic
CJD35_RS20810	COG4644	lycopene metabolic process
CJD35_RS20815	COG4644	lycopene metabolic process
CJD35_RS20825	COG4221	oxidoreductase activity
CJD35_RS20850	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
CJD35_RS20855	COG2948	multi-organism process
CJD35_RS20860	COG3504	Conjugal transfer protein
CJD35_RS20865	COG3736	Type IV secretory pathway, component VirB8
CJD35_RS20890	COG3451	type IV secretory pathway VirB4
CJD35_RS20895	COG3702	type iv secretory pathway
CJD35_RS20980	COG4227	nucleotidyltransferase activity
CJD35_RS21080	COG1476	TRANSCRIPTIONal
CJD35_RS21095	COG0629	single-stranded DNA binding
CJD35_RS21110	COG1192	Involved in chromosome partitioning
CJD35_RS21115	COG1475	DNA binding
CJD35_RS21135	COG4644	lycopene metabolic process
CJD35_RS21145	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS21185	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS21195	COG4566	intracellular signal transduction
CJD35_RS21200	COG4191	Histidine kinase
CJD35_RS21225	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD35_RS21225	COG1017	nitric oxide dioxygenase activity
CJD35_RS21235	COG0589	response to stress
CJD35_RS21245	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJD35_RS21245	COG2111	Na H antiporter
CJD35_RS21250	COG1006	Multisubunit Na H antiporter MnhC subunit
CJD35_RS21260	COG1863	multisubunit Na H antiporter MnhE subunit
CJD35_RS21265	COG2212	antiporter activity
CJD35_RS21270	COG1320	monovalent cation:proton antiporter activity
CJD35_RS21275	COG5001	Diguanylate cyclase
CJD35_RS21275	COG3300	MHYT domain
CJD35_RS21300	COG1902	pentaerythritol trinitrate reductase activity
CJD35_RS21310	COG4221	oxidoreductase activity
CJD35_RS21325	COG0693	protein deglycase activity
CJD35_RS21335	COG3328	transposase activity
CJD35_RS21355	COG1309	transcriptional regulator
CJD35_RS21410	COG0484	heat shock protein binding
CJD35_RS21420	COG0183	Belongs to the thiolase family
CJD35_RS21435	COG1028	Short-chain dehydrogenase reductase Sdr
CJD35_RS21440	COG2080	2 iron, 2 sulfur cluster binding
CJD35_RS21445	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CJD35_RS21450	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJD35_RS21480	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CJD35_RS21490	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJD35_RS21500	COG1278	Cold shock
CJD35_RS21615	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJD35_RS21640	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CJD35_RS21650	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS21670	COG3328	transposase activity
CJD35_RS21705	COG0789	Transcriptional regulator
CJD35_RS21745	COG1677	Flagellar hook-basal body complex protein FliE
CJD35_RS21750	COG3781	membrane
CJD35_RS21780	COG1285	pathogenesis
CJD35_RS21790	COG0586	Pfam SNARE associated Golgi protein
CJD35_RS21805	COG4227	nucleotidyltransferase activity
CJD35_RS21875	COG3451	type IV secretory pathway VirB4
CJD35_RS21895	COG3736	Type IV secretory pathway, component VirB8
CJD35_RS21900	COG3504	Conjugal transfer protein
CJD35_RS21910	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
CJD35_RS21915	COG3505	Type IV secretory pathway VirD4
CJD35_RS21945	COG1475	DNA binding
CJD35_RS21975	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS21980	COG0789	Transcriptional regulator
CJD35_RS22030	COG4221	oxidoreductase activity
CJD35_RS22035	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS22155	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
CJD35_RS22160	COG1088	dTDP-glucose 4,6-dehydratase activity
CJD35_RS22165	COG1091	dTDP-4-dehydrorhamnose reductase activity
CJD35_RS22170	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CJD35_RS22245	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD35_RS22250	COG0662	Cupin 2, conserved barrel domain protein
CJD35_RS22250	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CJD35_RS22280	COG1216	Glycosyl transferase, family 2
CJD35_RS22280	COG0438	transferase activity, transferring glycosyl groups