CJD35_RS00030	PWY-6531	mannitol cycle
CJD35_RS00035	PWY-7247	β-D-glucuronide and D-glucuronate degradation
CJD35_RS00035	PWY-7248	pectin degradation III
CJD35_RS00050	PWY-6123	inosine-5'-phosphate biosynthesis I
CJD35_RS00050	PWY-6124	inosine-5'-phosphate biosynthesis II
CJD35_RS00050	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS00050	PWY-7234	inosine-5'-phosphate biosynthesis III
CJD35_RS00080	PWY-5686	UMP biosynthesis
CJD35_RS00080	PWY-7790	CJD35_RS00080
CJD35_RS00080	PWY-7791	CJD35_RS00080
CJD35_RS00140	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJD35_RS00145	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS00145	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJD35_RS00145	PWY-6596	adenosine nucleotides degradation I
CJD35_RS00145	PWY-6606	guanosine nucleotides degradation II
CJD35_RS00145	PWY-6607	guanosine nucleotides degradation I
CJD35_RS00145	PWY-6608	guanosine nucleotides degradation III
CJD35_RS00145	PWY-7185	UTP and CTP dephosphorylation I
CJD35_RS00145	PWY-7821	CJD35_RS00145
CJD35_RS00190	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS00190	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS00285	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS00435	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJD35_RS00435	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CJD35_RS00485	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJD35_RS00490	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS00490	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS00490	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS00490	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS00495	PWY-2722	trehalose degradation IV
CJD35_RS00495	PWY-2723	trehalose degradation V
CJD35_RS00495	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJD35_RS00495	PWY-5661	GDP-glucose biosynthesis
CJD35_RS00495	PWY-621	sucrose degradation III (sucrose invertase)
CJD35_RS00495	PWY-7238	sucrose biosynthesis II
CJD35_RS00495	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJD35_RS00500	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJD35_RS00500	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJD35_RS00500	PWY-7242	D-fructuronate degradation
CJD35_RS00500	PWY-7310	D-glucosaminate degradation
CJD35_RS00500	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CJD35_RS00515	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJD35_RS00515	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJD35_RS00540	PWY-2941	L-lysine biosynthesis II
CJD35_RS00540	PWY-2942	L-lysine biosynthesis III
CJD35_RS00540	PWY-5097	L-lysine biosynthesis VI
CJD35_RS00620	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CJD35_RS00620	PWY-5368	dimorphecolate biosynthesis
CJD35_RS00620	PWY-5995	linoleate biosynthesis I (plants)
CJD35_RS00620	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CJD35_RS00620	PWY-6803	phosphatidylcholine acyl editing
CJD35_RS00620	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CJD35_RS00620	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CJD35_RS00620	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CJD35_RS00620	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CJD35_RS00620	PWY-7470	phosphatidylcholine biosynthesis VII
CJD35_RS00620	PWY-7618	ricinoleate biosynthesis
CJD35_RS00820	PWY-723	alkylnitronates degradation
CJD35_RS00835	PWY-6936	seleno-amino acid biosynthesis
CJD35_RS00835	PWY-7274	D-cycloserine biosynthesis
CJD35_RS00860	PWY-5269	cardiolipin biosynthesis II
CJD35_RS00860	PWY-5668	cardiolipin biosynthesis I
CJD35_RS00860	PWY-7817	CJD35_RS00860
CJD35_RS00910	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS00910	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS00910	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS00930	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CJD35_RS00930	PWY-6167	flavin biosynthesis II (archaea)
CJD35_RS00930	PWY-6168	flavin biosynthesis III (fungi)
CJD35_RS00930	PWY-7863	CJD35_RS00930
CJD35_RS00940	PWY-3841	folate transformations II
CJD35_RS00940	PWY-6614	tetrahydrofolate biosynthesis
CJD35_RS00950	PWY-6123	inosine-5'-phosphate biosynthesis I
CJD35_RS00950	PWY-7234	inosine-5'-phosphate biosynthesis III
CJD35_RS00955	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS00955	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS01050	PWY-5747	2-methylcitrate cycle II
CJD35_RS01100	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJD35_RS01100	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CJD35_RS01140	PWY-6700	queuosine biosynthesis
CJD35_RS01235	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJD35_RS01280	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJD35_RS01280	PWY-7177	UTP and CTP dephosphorylation II
CJD35_RS01280	PWY-7185	UTP and CTP dephosphorylation I
CJD35_RS01290	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS01290	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS01290	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS01290	PWY-7003	glycerol degradation to butanol
CJD35_RS01300	PWY-5958	acridone alkaloid biosynthesis
CJD35_RS01300	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJD35_RS01300	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJD35_RS01320	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS01320	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS01320	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS01320	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS01330	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS01340	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS01340	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJD35_RS01340	PWY-5057	L-valine degradation II
CJD35_RS01340	PWY-5076	L-leucine degradation III
CJD35_RS01340	PWY-5078	L-isoleucine degradation II
CJD35_RS01340	PWY-5079	L-phenylalanine degradation III
CJD35_RS01340	PWY-5082	L-methionine degradation III
CJD35_RS01340	PWY-5480	pyruvate fermentation to ethanol I
CJD35_RS01340	PWY-5486	pyruvate fermentation to ethanol II
CJD35_RS01340	PWY-5751	phenylethanol biosynthesis
CJD35_RS01340	PWY-6313	serotonin degradation
CJD35_RS01340	PWY-6333	acetaldehyde biosynthesis I
CJD35_RS01340	PWY-6342	noradrenaline and adrenaline degradation
CJD35_RS01340	PWY-6454	vancomycin resistance I
CJD35_RS01340	PWY-6587	pyruvate fermentation to ethanol III
CJD35_RS01340	PWY-6802	salidroside biosynthesis
CJD35_RS01340	PWY-6871	3-methylbutanol biosynthesis
CJD35_RS01340	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS01340	PWY-7013	L-1,2-propanediol degradation
CJD35_RS01340	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS01340	PWY-7118	chitin degradation to ethanol
CJD35_RS01340	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJD35_RS01340	PWY-7798	CJD35_RS01340
CJD35_RS01355	PWY-6700	queuosine biosynthesis
CJD35_RS01365	PWY-7851	CJD35_RS01365
CJD35_RS01390	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS01390	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS01390	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS01440	PWY-6679	jadomycin biosynthesis
CJD35_RS01440	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS01460	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS01465	PWY-6164	3-dehydroquinate biosynthesis I
CJD35_RS01480	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJD35_RS01480	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJD35_RS01480	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJD35_RS01480	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJD35_RS01480	PWY-6113	superpathway of mycolate biosynthesis
CJD35_RS01480	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJD35_RS01480	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJD35_RS01480	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS01480	PWY-7663	gondoate biosynthesis (anaerobic)
CJD35_RS01480	PWY-7664	oleate biosynthesis IV (anaerobic)
CJD35_RS01480	PWY-7858	CJD35_RS01480
CJD35_RS01480	PWYG-321	mycolate biosynthesis
CJD35_RS01500	PWY-7294	xylose degradation IV
CJD35_RS01500	PWY-7295	L-arabinose degradation IV
CJD35_RS01500	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS01505	PWY-5667	CDP-diacylglycerol biosynthesis I
CJD35_RS01505	PWY-5981	CDP-diacylglycerol biosynthesis III
CJD35_RS01505	PWY-7817	CJD35_RS01505
CJD35_RS01550	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS01550	PWY-6549	L-glutamine biosynthesis III
CJD35_RS01550	PWY-6728	methylaspartate cycle
CJD35_RS01550	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS01550	PWY-7124	ethylene biosynthesis V (engineered)
CJD35_RS01550	PWY-7254	TCA cycle VII (acetate-producers)
CJD35_RS01550	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJD35_RS01560	PWY-6749	CMP-legionaminate biosynthesis I
CJD35_RS01570	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJD35_RS01570	PWY-5667	CDP-diacylglycerol biosynthesis I
CJD35_RS01570	PWY-6453	stigma estolide biosynthesis
CJD35_RS01570	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CJD35_RS01570	PWY-7587	oleate biosynthesis III (cyanobacteria)
CJD35_RS01575	PWY-181	photorespiration
CJD35_RS01585	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJD35_RS01585	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJD35_RS01595	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJD35_RS01600	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJD35_RS01605	PWY-5392	reductive TCA cycle II
CJD35_RS01605	PWY-5537	pyruvate fermentation to acetate V
CJD35_RS01605	PWY-5538	pyruvate fermentation to acetate VI
CJD35_RS01605	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS01605	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS01605	PWY-6728	methylaspartate cycle
CJD35_RS01605	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS01605	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS01610	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS01610	PWY-5392	reductive TCA cycle II
CJD35_RS01610	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS01610	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS01610	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS01610	PWY-6728	methylaspartate cycle
CJD35_RS01610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS01610	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJD35_RS01610	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS01625	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS01625	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJD35_RS01625	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS01625	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS01625	PWY-6728	methylaspartate cycle
CJD35_RS01625	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS01625	PWY-7254	TCA cycle VII (acetate-producers)
CJD35_RS01625	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS01675	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJD35_RS01675	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJD35_RS01675	PWY-7242	D-fructuronate degradation
CJD35_RS01675	PWY-7310	D-glucosaminate degradation
CJD35_RS01675	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CJD35_RS01680	PWY-7130	L-glucose degradation
CJD35_RS01685	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS01685	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS01685	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS01685	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS01750	PWY-5676	acetyl-CoA fermentation to butanoate II
CJD35_RS01750	PWY-5741	ethylmalonyl-CoA pathway
CJD35_RS01750	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS01800	PWY-6936	seleno-amino acid biosynthesis
CJD35_RS01970	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS01970	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJD35_RS01970	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS01970	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS01970	PWY-6728	methylaspartate cycle
CJD35_RS01970	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS01970	PWY-7254	TCA cycle VII (acetate-producers)
CJD35_RS01970	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS02025	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS02025	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJD35_RS02025	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS02025	PWY-5723	Rubisco shunt
CJD35_RS02025	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS02025	PWY-6886	1-butanol autotrophic biosynthesis
CJD35_RS02025	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS02025	PWY-7003	glycerol degradation to butanol
CJD35_RS02025	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJD35_RS02025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS02140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS02185	PWY-723	alkylnitronates degradation
CJD35_RS02190	PWY-2941	L-lysine biosynthesis II
CJD35_RS02190	PWY-2942	L-lysine biosynthesis III
CJD35_RS02190	PWY-5097	L-lysine biosynthesis VI
CJD35_RS02190	PWY-6559	spermidine biosynthesis II
CJD35_RS02190	PWY-6562	norspermidine biosynthesis
CJD35_RS02190	PWY-7153	grixazone biosynthesis
CJD35_RS02195	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CJD35_RS02195	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CJD35_RS02195	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CJD35_RS02195	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CJD35_RS02195	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CJD35_RS02195	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CJD35_RS02195	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CJD35_RS02195	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CJD35_RS02195	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CJD35_RS02195	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CJD35_RS02240	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS02240	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS02265	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CJD35_RS02265	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CJD35_RS02265	PWY-6268	adenosylcobalamin salvage from cobalamin
CJD35_RS02265	PWY-6269	adenosylcobalamin salvage from cobinamide II
CJD35_RS02465	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS02465	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS02465	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJD35_RS02465	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS02465	PWY-5723	Rubisco shunt
CJD35_RS02465	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS02465	PWY-6886	1-butanol autotrophic biosynthesis
CJD35_RS02465	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS02465	PWY-7003	glycerol degradation to butanol
CJD35_RS02465	PWY-7124	ethylene biosynthesis V (engineered)
CJD35_RS02465	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJD35_RS02515	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS02590	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJD35_RS02880	PWY-2941	L-lysine biosynthesis II
CJD35_RS02880	PWY-2942	L-lysine biosynthesis III
CJD35_RS02880	PWY-5097	L-lysine biosynthesis VI
CJD35_RS02935	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS02970	PWY-6605	adenine and adenosine salvage II
CJD35_RS02970	PWY-6610	adenine and adenosine salvage IV
CJD35_RS02970	PWY-7805	CJD35_RS02970
CJD35_RS02970	PWY-7807	CJD35_RS02970
CJD35_RS02985	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS02985	PWY-6692	Fe(II) oxidation
CJD35_RS02985	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CJD35_RS02985	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS02990	PWY-6004	glycine betaine biosynthesis V (from glycine)
CJD35_RS02995	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJD35_RS03010	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJD35_RS03010	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJD35_RS03025	PWY-6703	preQ<sub>0</sub> biosynthesis
CJD35_RS03030	PWY-6703	preQ<sub>0</sub> biosynthesis
CJD35_RS03045	PWY-4981	L-proline biosynthesis II (from arginine)
CJD35_RS03045	PWY-4984	urea cycle
CJD35_RS03045	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS03125	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS03410	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS03410	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS03410	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS03410	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS03410	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CJD35_RS03410	PWY-6549	L-glutamine biosynthesis III
CJD35_RS03410	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJD35_RS03410	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS03410	PWY-7124	ethylene biosynthesis V (engineered)
CJD35_RS03435	PWY-4381	fatty acid biosynthesis initiation I
CJD35_RS03520	PWY-5392	reductive TCA cycle II
CJD35_RS03520	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS03520	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS03520	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS03520	PWY-6728	methylaspartate cycle
CJD35_RS03520	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS03520	PWY-7254	TCA cycle VII (acetate-producers)
CJD35_RS03520	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS03530	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJD35_RS03530	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS03530	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJD35_RS03530	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJD35_RS03530	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS03530	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS03530	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS03530	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJD35_RS03540	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJD35_RS03540	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS03540	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJD35_RS03540	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJD35_RS03540	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS03540	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS03540	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS03540	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJD35_RS03650	PWY-5132	humulone biosynthesis
CJD35_RS03650	PWY-5133	cohumulone biosynthesis
CJD35_RS03650	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJD35_RS03650	PWY-7118	chitin degradation to ethanol
CJD35_RS03650	PWY-7857	CJD35_RS03650
CJD35_RS03665	PWY-5057	L-valine degradation II
CJD35_RS03665	PWY-5076	L-leucine degradation III
CJD35_RS03665	PWY-5078	L-isoleucine degradation II
CJD35_RS03665	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS03665	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS03665	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS03665	PWY-5108	L-isoleucine biosynthesis V
CJD35_RS03665	PWY-7767	CJD35_RS03665
CJD35_RS03725	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS03725	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJD35_RS03725	PWY-7761	CJD35_RS03725
CJD35_RS03730	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJD35_RS03745	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJD35_RS03745	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJD35_RS03755	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CJD35_RS03755	PWY-5368	dimorphecolate biosynthesis
CJD35_RS03755	PWY-5995	linoleate biosynthesis I (plants)
CJD35_RS03755	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CJD35_RS03755	PWY-6803	phosphatidylcholine acyl editing
CJD35_RS03755	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CJD35_RS03755	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CJD35_RS03755	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CJD35_RS03755	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CJD35_RS03755	PWY-7470	phosphatidylcholine biosynthesis VII
CJD35_RS03755	PWY-7618	ricinoleate biosynthesis
CJD35_RS03760	PWY-5667	CDP-diacylglycerol biosynthesis I
CJD35_RS03760	PWY-5981	CDP-diacylglycerol biosynthesis III
CJD35_RS03785	PWY-6700	queuosine biosynthesis
CJD35_RS03825	PWY-6123	inosine-5'-phosphate biosynthesis I
CJD35_RS03825	PWY-6124	inosine-5'-phosphate biosynthesis II
CJD35_RS03825	PWY-7234	inosine-5'-phosphate biosynthesis III
CJD35_RS03840	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJD35_RS03840	PWY-5723	Rubisco shunt
CJD35_RS03850	PWY-6825	phosphatidylcholine biosynthesis V
CJD35_RS03905	PWY-6167	flavin biosynthesis II (archaea)
CJD35_RS03905	PWY-6168	flavin biosynthesis III (fungi)
CJD35_RS03910	PWY-6167	flavin biosynthesis II (archaea)
CJD35_RS03910	PWY-6168	flavin biosynthesis III (fungi)
CJD35_RS03910	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJD35_RS03915	PWY-6167	flavin biosynthesis II (archaea)
CJD35_RS03915	PWY-6168	flavin biosynthesis III (fungi)
CJD35_RS03915	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS03920	PWY-5525	D-glucuronate degradation I
CJD35_RS04000	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJD35_RS04000	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJD35_RS04000	PWY-6896	thiamin salvage I
CJD35_RS04000	PWY-6897	thiamin salvage II
CJD35_RS04025	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJD35_RS04150	PWY-2201	folate transformations I
CJD35_RS04195	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CJD35_RS04230	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJD35_RS04230	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CJD35_RS04235	PWY-3341	L-proline biosynthesis III
CJD35_RS04235	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJD35_RS04280	PWY-5344	L-homocysteine biosynthesis
CJD35_RS04290	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CJD35_RS04345	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CJD35_RS04360	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CJD35_RS04530	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS04530	PWY-6416	quinate degradation II
CJD35_RS04530	PWY-6707	gallate biosynthesis
CJD35_RS04535	PWY-6409	pyoverdine I biosynthesis
CJD35_RS04535	PWY-6562	norspermidine biosynthesis
CJD35_RS04535	PWY-761	rhizobactin 1021 biosynthesis
CJD35_RS04535	PWY-7855	CJD35_RS04535
CJD35_RS04645	PWY-7805	CJD35_RS04645
CJD35_RS04645	PWY-7807	CJD35_RS04645
CJD35_RS04650	PWY-4041	&gamma;-glutamyl cycle
CJD35_RS04650	PWY-5826	hypoglycin biosynthesis
CJD35_RS04705	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJD35_RS04705	PWY-5109	2-methylbutanoate biosynthesis
CJD35_RS04705	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJD35_RS04705	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJD35_RS04705	PWY-5177	glutaryl-CoA degradation
CJD35_RS04705	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS04705	PWY-6435	4-hydroxybenzoate biosynthesis V
CJD35_RS04705	PWY-6583	pyruvate fermentation to butanol I
CJD35_RS04705	PWY-6863	pyruvate fermentation to hexanol
CJD35_RS04705	PWY-6883	pyruvate fermentation to butanol II
CJD35_RS04705	PWY-6944	androstenedione degradation
CJD35_RS04705	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJD35_RS04705	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJD35_RS04705	PWY-7007	methyl ketone biosynthesis
CJD35_RS04705	PWY-7046	4-coumarate degradation (anaerobic)
CJD35_RS04705	PWY-7094	fatty acid salvage
CJD35_RS04705	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS04705	PWY-735	jasmonic acid biosynthesis
CJD35_RS04705	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJD35_RS04705	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJD35_RS04705	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJD35_RS04705	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJD35_RS04705	PWY-7726	CJD35_RS04705
CJD35_RS04705	PWY-7778	CJD35_RS04705
CJD35_RS04705	PWY-7779	CJD35_RS04705
CJD35_RS04705	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CJD35_RS04800	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS04800	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS04800	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS04825	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS04825	PWY-7761	CJD35_RS04825
CJD35_RS04875	PWY-2201	folate transformations I
CJD35_RS04880	PWY-6840	homoglutathione biosynthesis
CJD35_RS04880	PWY-7255	ergothioneine biosynthesis I (bacteria)
CJD35_RS04935	PWY-5386	methylglyoxal degradation I
CJD35_RS05090	PWY-6157	autoinducer AI-1 biosynthesis
CJD35_RS05340	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS05475	PWY-4202	arsenate detoxification I (glutaredoxin)
CJD35_RS05475	PWY-4621	arsenate detoxification II (glutaredoxin)
CJD35_RS05570	PWY-3861	mannitol degradation II
CJD35_RS05570	PWY-3881	mannitol biosynthesis
CJD35_RS05570	PWY-5659	GDP-mannose biosynthesis
CJD35_RS05570	PWY-6992	1,5-anhydrofructose degradation
CJD35_RS05570	PWY-7456	mannan degradation
CJD35_RS05570	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CJD35_RS05570	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJD35_RS05575	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CJD35_RS05575	PWY-7820	CJD35_RS05575
CJD35_RS05585	PWY-6168	flavin biosynthesis III (fungi)
CJD35_RS05585	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJD35_RS05635	PWY-6749	CMP-legionaminate biosynthesis I
CJD35_RS05660	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CJD35_RS05660	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJD35_RS05660	PWY-7766	CJD35_RS05660
CJD35_RS05675	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS05680	PWY-7851	CJD35_RS05680
CJD35_RS05760	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS05765	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJD35_RS05765	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJD35_RS05765	PWY-6897	thiamin salvage II
CJD35_RS05765	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJD35_RS05765	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJD35_RS05765	PWY-7356	thiamin salvage IV (yeast)
CJD35_RS05765	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJD35_RS05830	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS05935	PWY-1281	sulfoacetaldehyde degradation I
CJD35_RS05935	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS05935	PWY-5482	pyruvate fermentation to acetate II
CJD35_RS05935	PWY-5485	pyruvate fermentation to acetate IV
CJD35_RS05935	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS05935	PWY-6637	sulfolactate degradation II
CJD35_RS05935	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS06030	PWY-5686	UMP biosynthesis
CJD35_RS06070	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS06070	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS06070	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS06070	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJD35_RS06120	PWY-6825	phosphatidylcholine biosynthesis V
CJD35_RS06130	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS06130	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJD35_RS06130	PWY-7761	CJD35_RS06130
CJD35_RS06265	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJD35_RS06265	PWY-5109	2-methylbutanoate biosynthesis
CJD35_RS06265	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJD35_RS06265	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJD35_RS06265	PWY-5177	glutaryl-CoA degradation
CJD35_RS06265	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS06265	PWY-6435	4-hydroxybenzoate biosynthesis V
CJD35_RS06265	PWY-6583	pyruvate fermentation to butanol I
CJD35_RS06265	PWY-6863	pyruvate fermentation to hexanol
CJD35_RS06265	PWY-6883	pyruvate fermentation to butanol II
CJD35_RS06265	PWY-6944	androstenedione degradation
CJD35_RS06265	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJD35_RS06265	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJD35_RS06265	PWY-7007	methyl ketone biosynthesis
CJD35_RS06265	PWY-7046	4-coumarate degradation (anaerobic)
CJD35_RS06265	PWY-7094	fatty acid salvage
CJD35_RS06265	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS06265	PWY-735	jasmonic acid biosynthesis
CJD35_RS06265	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJD35_RS06265	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJD35_RS06265	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJD35_RS06265	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJD35_RS06265	PWY-7726	CJD35_RS06265
CJD35_RS06265	PWY-7778	CJD35_RS06265
CJD35_RS06265	PWY-7779	CJD35_RS06265
CJD35_RS06265	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CJD35_RS06275	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJD35_RS06280	PWY-723	alkylnitronates degradation
CJD35_RS06440	PWY-5386	methylglyoxal degradation I
CJD35_RS06495	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
CJD35_RS06495	PWY-5644	4-nitrotoluene degradation II
CJD35_RS06495	PWY-5645	4-chloronitrobenzene degradation
CJD35_RS06495	PWY-5647	2-nitrobenzoate degradation I
CJD35_RS06495	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
CJD35_RS06495	PWY-6210	2-aminophenol degradation
CJD35_RS06495	PWY-6214	3-chlorocatechol degradation III (<i>meta</i> pathway)
CJD35_RS06495	PWY-6336	protocatechuate degradation III (<I>para</I>-cleavage pathway)
CJD35_RS06495	PWY-7006	4-amino-3-hydroxybenzoate degradation
CJD35_RS06495	PWY-7480	2,3-dihydroxybenzoate degradation
CJD35_RS06510	PWY-5162	2-oxopentenoate degradation
CJD35_RS06510	PWY-5436	L-threonine degradation IV
CJD35_RS06510	PWY-5480	pyruvate fermentation to ethanol I
CJD35_RS06510	PWY-6587	pyruvate fermentation to ethanol III
CJD35_RS06510	PWY-7085	triethylamine degradation
CJD35_RS06510	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CJD35_RS06515	PWY-5162	2-oxopentenoate degradation
CJD35_RS06520	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
CJD35_RS06520	PWY-5641	2-nitrotoluene degradation
CJD35_RS06605	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CJD35_RS06605	PWY-622	starch biosynthesis
CJD35_RS06710	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CJD35_RS06760	PWY-4202	arsenate detoxification I (glutaredoxin)
CJD35_RS06760	PWY-4621	arsenate detoxification II (glutaredoxin)
CJD35_RS06815	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS06825	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJD35_RS06825	PWY-5109	2-methylbutanoate biosynthesis
CJD35_RS06825	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJD35_RS06825	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJD35_RS06825	PWY-5177	glutaryl-CoA degradation
CJD35_RS06825	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS06825	PWY-6435	4-hydroxybenzoate biosynthesis V
CJD35_RS06825	PWY-6583	pyruvate fermentation to butanol I
CJD35_RS06825	PWY-6863	pyruvate fermentation to hexanol
CJD35_RS06825	PWY-6883	pyruvate fermentation to butanol II
CJD35_RS06825	PWY-6944	androstenedione degradation
CJD35_RS06825	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJD35_RS06825	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJD35_RS06825	PWY-7007	methyl ketone biosynthesis
CJD35_RS06825	PWY-7046	4-coumarate degradation (anaerobic)
CJD35_RS06825	PWY-7094	fatty acid salvage
CJD35_RS06825	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS06825	PWY-735	jasmonic acid biosynthesis
CJD35_RS06825	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJD35_RS06825	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJD35_RS06825	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJD35_RS06825	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJD35_RS06825	PWY-7726	CJD35_RS06825
CJD35_RS06825	PWY-7778	CJD35_RS06825
CJD35_RS06825	PWY-7779	CJD35_RS06825
CJD35_RS06825	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CJD35_RS06990	PWY-6936	seleno-amino acid biosynthesis
CJD35_RS06995	PWY-5350	thiosulfate disproportionation III (rhodanese)
CJD35_RS07005	PWY-6700	queuosine biosynthesis
CJD35_RS07015	PWY-4702	phytate degradation I
CJD35_RS07070	PWY-5663	tetrahydrobiopterin biosynthesis I
CJD35_RS07070	PWY-5664	tetrahydrobiopterin biosynthesis II
CJD35_RS07070	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJD35_RS07070	PWY-6703	preQ<sub>0</sub> biosynthesis
CJD35_RS07070	PWY-6983	tetrahydrobiopterin biosynthesis III
CJD35_RS07070	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJD35_RS07070	PWY-7852	CJD35_RS07070
CJD35_RS07135	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS07165	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CJD35_RS07165	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJD35_RS07185	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJD35_RS07185	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJD35_RS07185	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJD35_RS07185	PWY-6113	superpathway of mycolate biosynthesis
CJD35_RS07185	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJD35_RS07185	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJD35_RS07185	PWY-7663	gondoate biosynthesis (anaerobic)
CJD35_RS07185	PWY-7664	oleate biosynthesis IV (anaerobic)
CJD35_RS07185	PWY-7858	CJD35_RS07185
CJD35_RS07185	PWYG-321	mycolate biosynthesis
CJD35_RS07200	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS07370	PWY-6134	L-tyrosine biosynthesis IV
CJD35_RS07370	PWY-7158	L-phenylalanine degradation V
CJD35_RS07430	PWY-6317	galactose degradation I (Leloir pathway)
CJD35_RS07500	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS07500	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJD35_RS07505	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS07505	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS07505	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS07535	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS07535	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS07555	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJD35_RS07555	PWY-2201	folate transformations I
CJD35_RS07555	PWY-3841	folate transformations II
CJD35_RS07555	PWY-5030	L-histidine degradation III
CJD35_RS07555	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS07555	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJD35_RS07595	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CJD35_RS07645	PWY-4983	L-citrulline-nitric oxide cycle
CJD35_RS07645	PWY-4984	urea cycle
CJD35_RS07645	PWY-5	canavanine biosynthesis
CJD35_RS07645	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS07645	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS07655	PWY-2941	L-lysine biosynthesis II
CJD35_RS07655	PWY-2942	L-lysine biosynthesis III
CJD35_RS07655	PWY-5097	L-lysine biosynthesis VI
CJD35_RS07660	PWY-5194	siroheme biosynthesis
CJD35_RS07660	PWY-5196	factor 430 biosynthesis
CJD35_RS07660	PWY-5441	S-methyl-L-methionine cycle
CJD35_RS07660	PWY-702	L-methionine biosynthesis II
CJD35_RS07660	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJD35_RS07725	PWY-1881	formate oxidation to CO<sub>2</sub>
CJD35_RS07725	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS07725	PWY-6696	oxalate degradation III
CJD35_RS07765	PWY-2201	folate transformations I
CJD35_RS07795	PWY-5316	nicotine biosynthesis
CJD35_RS07795	PWY-7342	superpathway of nicotine biosynthesis
CJD35_RS07800	PWY-5316	nicotine biosynthesis
CJD35_RS07800	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS07800	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJD35_RS07800	PWY-7342	superpathway of nicotine biosynthesis
CJD35_RS07830	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS07830	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS08010	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS08145	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJD35_RS08225	PWY-4983	L-citrulline-nitric oxide cycle
CJD35_RS08225	PWY-4984	urea cycle
CJD35_RS08225	PWY-5	canavanine biosynthesis
CJD35_RS08225	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS08225	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS08260	PWY-6012	acyl carrier protein metabolism I
CJD35_RS08260	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CJD35_RS08270	PWY-5686	UMP biosynthesis
CJD35_RS08270	PWY-7790	CJD35_RS08270
CJD35_RS08270	PWY-7791	CJD35_RS08270
CJD35_RS08280	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS08280	PWY-4521	arsenite oxidation I (respiratory)
CJD35_RS08280	PWY-6692	Fe(II) oxidation
CJD35_RS08280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS08330	PWY-5686	UMP biosynthesis
CJD35_RS08330	PWY-7790	CJD35_RS08330
CJD35_RS08330	PWY-7791	CJD35_RS08330
CJD35_RS08460	PWY-5392	reductive TCA cycle II
CJD35_RS08460	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJD35_RS08460	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS08460	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS08460	PWY-6728	methylaspartate cycle
CJD35_RS08460	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS08460	PWY-7254	TCA cycle VII (acetate-producers)
CJD35_RS08460	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS08475	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS08655	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS08755	PWY-6164	3-dehydroquinate biosynthesis I
CJD35_RS08785	PWY-5958	acridone alkaloid biosynthesis
CJD35_RS08785	PWY-6543	4-aminobenzoate biosynthesis
CJD35_RS08785	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJD35_RS08785	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJD35_RS08860	PWY-5839	menaquinol-7 biosynthesis
CJD35_RS08860	PWY-5844	menaquinol-9 biosynthesis
CJD35_RS08860	PWY-5849	menaquinol-6 biosynthesis
CJD35_RS08860	PWY-5890	menaquinol-10 biosynthesis
CJD35_RS08860	PWY-5891	menaquinol-11 biosynthesis
CJD35_RS08860	PWY-5892	menaquinol-12 biosynthesis
CJD35_RS08860	PWY-5895	menaquinol-13 biosynthesis
CJD35_RS08950	PWY-5278	sulfite oxidation III
CJD35_RS08950	PWY-5340	sulfate activation for sulfonation
CJD35_RS08950	PWY-6683	sulfate reduction III (assimilatory)
CJD35_RS08950	PWY-6932	selenate reduction
CJD35_RS08955	PWY-5278	sulfite oxidation III
CJD35_RS08955	PWY-5340	sulfate activation for sulfonation
CJD35_RS08955	PWY-6683	sulfate reduction III (assimilatory)
CJD35_RS08955	PWY-6932	selenate reduction
CJD35_RS08965	PWY-7533	gliotoxin biosynthesis
CJD35_RS08975	PWY-7801	CJD35_RS08975
CJD35_RS09015	PWY-4202	arsenate detoxification I (glutaredoxin)
CJD35_RS09015	PWY-4621	arsenate detoxification II (glutaredoxin)
CJD35_RS09030	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS09030	PWY-6416	quinate degradation II
CJD35_RS09030	PWY-6707	gallate biosynthesis
CJD35_RS09035	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS09035	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS09180	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS09200	PWY-2941	L-lysine biosynthesis II
CJD35_RS09200	PWY-5097	L-lysine biosynthesis VI
CJD35_RS09250	PWY-6829	tRNA methylation (yeast)
CJD35_RS09250	PWY-7285	methylwyosine biosynthesis
CJD35_RS09250	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CJD35_RS09400	PWY-2201	folate transformations I
CJD35_RS09400	PWY-3841	folate transformations II
CJD35_RS09410	PWY-2201	folate transformations I
CJD35_RS09410	PWY-3841	folate transformations II
CJD35_RS09460	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJD35_RS09460	PWY-6596	adenosine nucleotides degradation I
CJD35_RS09460	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS09465	PWY-6825	phosphatidylcholine biosynthesis V
CJD35_RS09480	PWY-7294	xylose degradation IV
CJD35_RS09480	PWY-7295	L-arabinose degradation IV
CJD35_RS09505	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJD35_RS09505	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJD35_RS09505	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS09505	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS09505	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJD35_RS09505	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJD35_RS09505	PWY-7205	CMP phosphorylation
CJD35_RS09505	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJD35_RS09505	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS09505	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS09505	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS09505	PWY-7224	purine deoxyribonucleosides salvage
CJD35_RS09505	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS09505	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJD35_RS09665	PWY-6654	phosphopantothenate biosynthesis III
CJD35_RS09740	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS09750	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJD35_RS09790	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJD35_RS09790	PWY-5723	Rubisco shunt
CJD35_RS10110	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS10110	PWY-5743	3-hydroxypropanoate cycle
CJD35_RS10110	PWY-5744	glyoxylate assimilation
CJD35_RS10110	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS10110	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS10110	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJD35_RS10110	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS10135	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJD35_RS10135	PWY-5491	diethylphosphate degradation
CJD35_RS10175	PWY-3341	L-proline biosynthesis III
CJD35_RS10175	PWY-4981	L-proline biosynthesis II (from arginine)
CJD35_RS10175	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJD35_RS10250	PWY-6749	CMP-legionaminate biosynthesis I
CJD35_RS10260	PWY-6910	hydroxymethylpyrimidine salvage
CJD35_RS10260	PWY-7356	thiamin salvage IV (yeast)
CJD35_RS10260	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJD35_RS10310	PWY-702	L-methionine biosynthesis II
CJD35_RS10315	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS10405	PWY-2201	folate transformations I
CJD35_RS10425	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS10425	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS10430	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJD35_RS10430	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJD35_RS10430	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJD35_RS10435	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS10435	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS10445	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJD35_RS10445	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJD35_RS10445	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJD35_RS10445	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJD35_RS10450	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS10450	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS10460	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS10460	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS10465	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS10465	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS10565	PWY-3461	L-tyrosine biosynthesis II
CJD35_RS10565	PWY-3462	L-phenylalanine biosynthesis II
CJD35_RS10565	PWY-6120	L-tyrosine biosynthesis III
CJD35_RS10565	PWY-6627	salinosporamide A biosynthesis
CJD35_RS10565	PWY-7626	bacilysin biosynthesis
CJD35_RS10590	PWY-7158	L-phenylalanine degradation V
CJD35_RS10625	PWY-3341	L-proline biosynthesis III
CJD35_RS10625	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJD35_RS10725	PWY-5686	UMP biosynthesis
CJD35_RS10725	PWY-7790	CJD35_RS10725
CJD35_RS10725	PWY-7791	CJD35_RS10725
CJD35_RS10795	PWY-5022	4-aminobutanoate degradation V
CJD35_RS10795	PWY-6728	methylaspartate cycle
CJD35_RS10795	PWY-7126	ethylene biosynthesis IV
CJD35_RS10840	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJD35_RS10840	PWY-6855	chitin degradation I (archaea)
CJD35_RS10840	PWY-6906	chitin derivatives degradation
CJD35_RS10850	PWY-3821	galactose degradation III
CJD35_RS10850	PWY-6317	galactose degradation I (Leloir pathway)
CJD35_RS10850	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJD35_RS10850	PWY-6527	stachyose degradation
CJD35_RS10850	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJD35_RS10850	PWY-7344	UDP-D-galactose biosynthesis
CJD35_RS10855	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJD35_RS10855	PWY-5109	2-methylbutanoate biosynthesis
CJD35_RS10855	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJD35_RS10855	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJD35_RS10855	PWY-5177	glutaryl-CoA degradation
CJD35_RS10855	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS10855	PWY-6435	4-hydroxybenzoate biosynthesis V
CJD35_RS10855	PWY-6583	pyruvate fermentation to butanol I
CJD35_RS10855	PWY-6863	pyruvate fermentation to hexanol
CJD35_RS10855	PWY-6883	pyruvate fermentation to butanol II
CJD35_RS10855	PWY-6944	androstenedione degradation
CJD35_RS10855	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJD35_RS10855	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJD35_RS10855	PWY-7007	methyl ketone biosynthesis
CJD35_RS10855	PWY-7046	4-coumarate degradation (anaerobic)
CJD35_RS10855	PWY-7094	fatty acid salvage
CJD35_RS10855	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS10855	PWY-735	jasmonic acid biosynthesis
CJD35_RS10855	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJD35_RS10855	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJD35_RS10855	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJD35_RS10855	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJD35_RS10855	PWY-7726	CJD35_RS10855
CJD35_RS10855	PWY-7778	CJD35_RS10855
CJD35_RS10855	PWY-7779	CJD35_RS10855
CJD35_RS10855	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CJD35_RS10875	PWY-5663	tetrahydrobiopterin biosynthesis I
CJD35_RS10875	PWY-5664	tetrahydrobiopterin biosynthesis II
CJD35_RS10875	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJD35_RS10875	PWY-6703	preQ<sub>0</sub> biosynthesis
CJD35_RS10875	PWY-6983	tetrahydrobiopterin biosynthesis III
CJD35_RS10875	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJD35_RS10875	PWY-7852	CJD35_RS10875
CJD35_RS10920	PWY-5642	2,4-dinitrotoluene degradation
CJD35_RS10920	PWY-6373	acrylate degradation
CJD35_RS10980	PWY-6614	tetrahydrofolate biosynthesis
CJD35_RS10995	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS10995	PWY-4521	arsenite oxidation I (respiratory)
CJD35_RS10995	PWY-6692	Fe(II) oxidation
CJD35_RS10995	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS11130	PWY-4381	fatty acid biosynthesis initiation I
CJD35_RS11130	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CJD35_RS11130	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS11215	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CJD35_RS11215	PWY-5940	streptomycin biosynthesis
CJD35_RS11220	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CJD35_RS11285	PWY-6679	jadomycin biosynthesis
CJD35_RS11285	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS11610	PWY-5392	reductive TCA cycle II
CJD35_RS11610	PWY-5537	pyruvate fermentation to acetate V
CJD35_RS11610	PWY-5538	pyruvate fermentation to acetate VI
CJD35_RS11610	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS11610	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS11610	PWY-6728	methylaspartate cycle
CJD35_RS11610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS11610	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS11805	PWY-7799	CJD35_RS11805
CJD35_RS11845	PWY-43	putrescine biosynthesis II
CJD35_RS11850	PWY-43	putrescine biosynthesis II
CJD35_RS11870	PWY-7731	CJD35_RS11870
CJD35_RS11930	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS11935	PWY-6556	pyrimidine ribonucleosides salvage II
CJD35_RS11935	PWY-7181	pyrimidine deoxyribonucleosides degradation
CJD35_RS11935	PWY-7193	pyrimidine ribonucleosides salvage I
CJD35_RS11935	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJD35_RS11970	PWY-6683	sulfate reduction III (assimilatory)
CJD35_RS11980	PWY-5194	siroheme biosynthesis
CJD35_RS11980	PWY-5196	factor 430 biosynthesis
CJD35_RS11980	PWY-5441	S-methyl-L-methionine cycle
CJD35_RS11980	PWY-702	L-methionine biosynthesis II
CJD35_RS11980	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJD35_RS12005	PWY-723	alkylnitronates degradation
CJD35_RS12175	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJD35_RS12230	PWY-7205	CMP phosphorylation
CJD35_RS12240	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJD35_RS12275	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS12320	PWY-2161	folate polyglutamylation
CJD35_RS12325	PWY-6679	jadomycin biosynthesis
CJD35_RS12325	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS12350	PWY-5129	sphingolipid biosynthesis (plants)
CJD35_RS12350	PWY-7836	CJD35_RS12350
CJD35_RS12350	PWY-7838	CJD35_RS12350
CJD35_RS12350	PWY-7839	CJD35_RS12350
CJD35_RS12350	PWY-7841	CJD35_RS12350
CJD35_RS12525	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS12525	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJD35_RS12525	PWY-5057	L-valine degradation II
CJD35_RS12525	PWY-5076	L-leucine degradation III
CJD35_RS12525	PWY-5078	L-isoleucine degradation II
CJD35_RS12525	PWY-5079	L-phenylalanine degradation III
CJD35_RS12525	PWY-5082	L-methionine degradation III
CJD35_RS12525	PWY-5480	pyruvate fermentation to ethanol I
CJD35_RS12525	PWY-5486	pyruvate fermentation to ethanol II
CJD35_RS12525	PWY-5751	phenylethanol biosynthesis
CJD35_RS12525	PWY-6313	serotonin degradation
CJD35_RS12525	PWY-6333	acetaldehyde biosynthesis I
CJD35_RS12525	PWY-6342	noradrenaline and adrenaline degradation
CJD35_RS12525	PWY-6454	vancomycin resistance I
CJD35_RS12525	PWY-6587	pyruvate fermentation to ethanol III
CJD35_RS12525	PWY-6802	salidroside biosynthesis
CJD35_RS12525	PWY-6871	3-methylbutanol biosynthesis
CJD35_RS12525	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS12525	PWY-7013	L-1,2-propanediol degradation
CJD35_RS12525	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS12525	PWY-7118	chitin degradation to ethanol
CJD35_RS12525	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJD35_RS12525	PWY-7798	CJD35_RS12525
CJD35_RS12605	PWY-6749	CMP-legionaminate biosynthesis I
CJD35_RS12610	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CJD35_RS12640	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS12640	PWY-6549	L-glutamine biosynthesis III
CJD35_RS12640	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJD35_RS12640	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS12725	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS12725	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS12725	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS12725	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJD35_RS12820	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS12835	PWY-6938	NADH repair
CJD35_RS12850	PWY-6562	norspermidine biosynthesis
CJD35_RS12885	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJD35_RS12885	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
CJD35_RS12890	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJD35_RS12890	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJD35_RS12935	PWY-3801	sucrose degradation II (sucrose synthase)
CJD35_RS12935	PWY-5054	sorbitol biosynthesis I
CJD35_RS12935	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CJD35_RS12935	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJD35_RS12935	PWY-5659	GDP-mannose biosynthesis
CJD35_RS12935	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS12935	PWY-621	sucrose degradation III (sucrose invertase)
CJD35_RS12935	PWY-622	starch biosynthesis
CJD35_RS12935	PWY-6981	chitin biosynthesis
CJD35_RS12935	PWY-6992	1,5-anhydrofructose degradation
CJD35_RS12935	PWY-7238	sucrose biosynthesis II
CJD35_RS12935	PWY-7347	sucrose biosynthesis III
CJD35_RS12935	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJD35_RS12940	PWY-4081	glutathione redox reactions I
CJD35_RS12955	PWY-6679	jadomycin biosynthesis
CJD35_RS12955	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJD35_RS12960	PWY-5741	ethylmalonyl-CoA pathway
CJD35_RS12960	PWY-5743	3-hydroxypropanoate cycle
CJD35_RS12960	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS12960	PWY-6728	methylaspartate cycle
CJD35_RS12960	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS12960	PWY-7854	CJD35_RS12960
CJD35_RS12970	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJD35_RS13050	PWY-2941	L-lysine biosynthesis II
CJD35_RS13050	PWY-2942	L-lysine biosynthesis III
CJD35_RS13050	PWY-5097	L-lysine biosynthesis VI
CJD35_RS13050	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS13050	PWY-6559	spermidine biosynthesis II
CJD35_RS13050	PWY-6562	norspermidine biosynthesis
CJD35_RS13050	PWY-7153	grixazone biosynthesis
CJD35_RS13050	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS13075	PWY-6617	adenosine nucleotides degradation III
CJD35_RS13090	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJD35_RS13135	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS13165	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJD35_RS13165	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJD35_RS13170	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJD35_RS13170	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS13170	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS13170	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJD35_RS13170	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJD35_RS13170	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJD35_RS13235	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJD35_RS13235	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJD35_RS13235	PWY-6897	thiamin salvage II
CJD35_RS13235	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJD35_RS13235	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJD35_RS13235	PWY-7356	thiamin salvage IV (yeast)
CJD35_RS13235	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJD35_RS13240	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS13240	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJD35_RS13240	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS13240	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS13240	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJD35_RS13245	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS13245	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS13245	PWY-6886	1-butanol autotrophic biosynthesis
CJD35_RS13245	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS13245	PWY-7003	glycerol degradation to butanol
CJD35_RS13250	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS13250	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS13250	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS13250	PWY-7003	glycerol degradation to butanol
CJD35_RS13255	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJD35_RS13255	PWY-5723	Rubisco shunt
CJD35_RS13255	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS13255	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS13255	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS13255	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS13310	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJD35_RS13315	PWY-3841	folate transformations II
CJD35_RS13315	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJD35_RS13315	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJD35_RS13315	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJD35_RS13315	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJD35_RS13315	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJD35_RS13385	PWY-7799	CJD35_RS13385
CJD35_RS13385	PWY-7800	CJD35_RS13385
CJD35_RS13395	PWY-381	nitrate reduction II (assimilatory)
CJD35_RS13395	PWY-5675	nitrate reduction V (assimilatory)
CJD35_RS13395	PWY-6549	L-glutamine biosynthesis III
CJD35_RS13395	PWY-6963	ammonia assimilation cycle I
CJD35_RS13395	PWY-6964	ammonia assimilation cycle II
CJD35_RS13410	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJD35_RS13410	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJD35_RS13800	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJD35_RS13800	PWY-6148	tetrahydromethanopterin biosynthesis
CJD35_RS13800	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJD35_RS13800	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJD35_RS13870	PWY-6123	inosine-5'-phosphate biosynthesis I
CJD35_RS13870	PWY-6124	inosine-5'-phosphate biosynthesis II
CJD35_RS13870	PWY-7234	inosine-5'-phosphate biosynthesis III
CJD35_RS13885	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS13885	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS13885	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS13890	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJD35_RS13890	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJD35_RS13890	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJD35_RS13980	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS13980	PWY-4521	arsenite oxidation I (respiratory)
CJD35_RS13980	PWY-6692	Fe(II) oxidation
CJD35_RS13980	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS14080	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJD35_RS14080	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJD35_RS14080	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJD35_RS14125	PWY-7560	methylerythritol phosphate pathway II
CJD35_RS14140	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJD35_RS14140	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJD35_RS14145	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS14145	PWY-5743	3-hydroxypropanoate cycle
CJD35_RS14145	PWY-5744	glyoxylate assimilation
CJD35_RS14145	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS14145	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS14145	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJD35_RS14145	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS14285	PWY-5958	acridone alkaloid biosynthesis
CJD35_RS14285	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJD35_RS14285	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJD35_RS14310	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS14325	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJD35_RS14370	PWY-3961	phosphopantothenate biosynthesis II
CJD35_RS14385	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS14385	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJD35_RS14385	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJD35_RS14385	PWY-6692	Fe(II) oxidation
CJD35_RS14390	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS14390	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJD35_RS14390	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJD35_RS14390	PWY-6692	Fe(II) oxidation
CJD35_RS14450	PWY-2301	<i>myo</i>-inositol biosynthesis
CJD35_RS14450	PWY-4702	phytate degradation I
CJD35_RS14450	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CJD35_RS14470	PWY-6728	methylaspartate cycle
CJD35_RS14470	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS14470	PWY-7118	chitin degradation to ethanol
CJD35_RS14470	PWY-7294	xylose degradation IV
CJD35_RS14470	PWY-7295	L-arabinose degradation IV
CJD35_RS14470	PWY-7854	CJD35_RS14470
CJD35_RS14480	PWY-1281	sulfoacetaldehyde degradation I
CJD35_RS14480	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJD35_RS14480	PWY-5482	pyruvate fermentation to acetate II
CJD35_RS14480	PWY-5485	pyruvate fermentation to acetate IV
CJD35_RS14480	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS14480	PWY-6637	sulfolactate degradation II
CJD35_RS14480	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJD35_RS14560	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS14560	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS14560	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS14560	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJD35_RS14565	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS14565	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS14565	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS14565	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJD35_RS14585	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS14585	PWY-181	photorespiration
CJD35_RS14585	PWY-2161	folate polyglutamylation
CJD35_RS14585	PWY-2201	folate transformations I
CJD35_RS14585	PWY-3661	glycine betaine degradation I
CJD35_RS14585	PWY-3661-1	glycine betaine degradation II (mammalian)
CJD35_RS14585	PWY-3841	folate transformations II
CJD35_RS14585	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS14595	PWY-6004	glycine betaine biosynthesis V (from glycine)
CJD35_RS14600	PWY-3461	L-tyrosine biosynthesis II
CJD35_RS14600	PWY-3462	L-phenylalanine biosynthesis II
CJD35_RS14600	PWY-6120	L-tyrosine biosynthesis III
CJD35_RS14600	PWY-6406	salicylate biosynthesis I
CJD35_RS14600	PWY-6627	salinosporamide A biosynthesis
CJD35_RS14600	PWY-7626	bacilysin biosynthesis
CJD35_RS14615	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJD35_RS14615	PWY-6148	tetrahydromethanopterin biosynthesis
CJD35_RS14615	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJD35_RS14615	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJD35_RS14615	PWY-7852	CJD35_RS14615
CJD35_RS14615	PWY-7853	CJD35_RS14615
CJD35_RS14640	PWY-622	starch biosynthesis
CJD35_RS14650	PWY-5941	glycogen degradation II (eukaryotic)
CJD35_RS14650	PWY-6731	starch degradation III
CJD35_RS14650	PWY-6737	starch degradation V
CJD35_RS14650	PWY-7238	sucrose biosynthesis II
CJD35_RS14690	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJD35_RS14725	PWY-2781	<i>cis</i>-zeatin biosynthesis
CJD35_RS14730	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS14730	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS14730	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS14730	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJD35_RS14730	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJD35_RS14730	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJD35_RS14730	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS14740	PWY-5101	L-isoleucine biosynthesis II
CJD35_RS14740	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS14740	PWY-5104	L-isoleucine biosynthesis IV
CJD35_RS14740	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJD35_RS14740	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJD35_RS14740	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJD35_RS14740	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS14745	PWY-5103	L-isoleucine biosynthesis III
CJD35_RS14745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS14755	PWY-6871	3-methylbutanol biosynthesis
CJD35_RS14815	PWY-1042	glycolysis IV (plant cytosol)
CJD35_RS14815	PWY-1622	formaldehyde assimilation I (serine pathway)
CJD35_RS14815	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJD35_RS14815	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJD35_RS14815	PWY-5723	Rubisco shunt
CJD35_RS14815	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJD35_RS14815	PWY-6886	1-butanol autotrophic biosynthesis
CJD35_RS14815	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS14815	PWY-7003	glycerol degradation to butanol
CJD35_RS14815	PWY-7124	ethylene biosynthesis V (engineered)
CJD35_RS14815	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJD35_RS14855	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS14855	PWY-5686	UMP biosynthesis
CJD35_RS14855	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS14855	PWY-7790	CJD35_RS14855
CJD35_RS14855	PWY-7791	CJD35_RS14855
CJD35_RS14865	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJD35_RS14865	PWY-5686	UMP biosynthesis
CJD35_RS14865	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJD35_RS14865	PWY-7790	CJD35_RS14865
CJD35_RS14865	PWY-7791	CJD35_RS14865
CJD35_RS15100	PWY-5941	glycogen degradation II (eukaryotic)
CJD35_RS15100	PWY-6724	starch degradation II
CJD35_RS15100	PWY-6737	starch degradation V
CJD35_RS15100	PWY-7238	sucrose biosynthesis II
CJD35_RS15245	PWY-6834	spermidine biosynthesis III
CJD35_RS15475	PWY-5198	factor 420 biosynthesis
CJD35_RS15480	PWY-5198	factor 420 biosynthesis
CJD35_RS15485	PWY-5199	factor 420 polyglutamylation
CJD35_RS15495	PWY-5198	factor 420 biosynthesis
CJD35_RS15555	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJD35_RS15555	PWY-5109	2-methylbutanoate biosynthesis
CJD35_RS15555	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJD35_RS15555	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJD35_RS15555	PWY-5177	glutaryl-CoA degradation
CJD35_RS15555	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJD35_RS15555	PWY-6435	4-hydroxybenzoate biosynthesis V
CJD35_RS15555	PWY-6583	pyruvate fermentation to butanol I
CJD35_RS15555	PWY-6863	pyruvate fermentation to hexanol
CJD35_RS15555	PWY-6883	pyruvate fermentation to butanol II
CJD35_RS15555	PWY-6944	androstenedione degradation
CJD35_RS15555	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJD35_RS15555	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJD35_RS15555	PWY-7007	methyl ketone biosynthesis
CJD35_RS15555	PWY-7046	4-coumarate degradation (anaerobic)
CJD35_RS15555	PWY-7094	fatty acid salvage
CJD35_RS15555	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJD35_RS15555	PWY-735	jasmonic acid biosynthesis
CJD35_RS15555	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJD35_RS15555	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJD35_RS15555	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJD35_RS15555	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJD35_RS15555	PWY-7726	CJD35_RS15555
CJD35_RS15555	PWY-7778	CJD35_RS15555
CJD35_RS15555	PWY-7779	CJD35_RS15555
CJD35_RS15555	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CJD35_RS15880	PWY-7723	CJD35_RS15880
CJD35_RS15905	PWY-7723	CJD35_RS15905
CJD35_RS16165	PWY-6157	autoinducer AI-1 biosynthesis
CJD35_RS16335	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJD35_RS16335	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJD35_RS16335	PWY-6936	seleno-amino acid biosynthesis
CJD35_RS16335	PWY-702	L-methionine biosynthesis II
CJD35_RS16360	PWY-7255	ergothioneine biosynthesis I (bacteria)
CJD35_RS16360	PWY-7550	ergothioneine biosynthesis II (fungi)
CJD35_RS16385	PWY-2201	folate transformations I
CJD35_RS16385	PWY-3841	folate transformations II
CJD35_RS16390	PWY-2201	folate transformations I
CJD35_RS16390	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS16395	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJD35_RS16395	PWY-2201	folate transformations I
CJD35_RS16395	PWY-3841	folate transformations II
CJD35_RS16395	PWY-5030	L-histidine degradation III
CJD35_RS16395	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS16395	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJD35_RS16400	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJD35_RS16400	PWY-6148	tetrahydromethanopterin biosynthesis
CJD35_RS16400	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJD35_RS16400	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJD35_RS16440	PWY-5392	reductive TCA cycle II
CJD35_RS16440	PWY-5537	pyruvate fermentation to acetate V
CJD35_RS16440	PWY-5538	pyruvate fermentation to acetate VI
CJD35_RS16440	PWY-5690	TCA cycle II (plants and fungi)
CJD35_RS16440	PWY-5913	TCA cycle VI (obligate autotrophs)
CJD35_RS16440	PWY-6728	methylaspartate cycle
CJD35_RS16440	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJD35_RS16440	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJD35_RS16495	PWY-7425	2-chloroacrylate degradation I
CJD35_RS16720	PWY-5692	allantoin degradation to glyoxylate II
CJD35_RS16720	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CJD35_RS16805	PWY-7701	CJD35_RS16805
CJD35_RS16825	PWY-6216	3-chlorobenzoate degradation II (via protocatechuate)
CJD35_RS16825	PWY-6217	3,4-dichlorobenzoate degradation
CJD35_RS16940	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS17015	PWY-6683	sulfate reduction III (assimilatory)
CJD35_RS17030	PWY-5194	siroheme biosynthesis
CJD35_RS17030	PWY-5196	factor 430 biosynthesis
CJD35_RS17030	PWY-5441	S-methyl-L-methionine cycle
CJD35_RS17030	PWY-702	L-methionine biosynthesis II
CJD35_RS17030	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJD35_RS17045	PWY-5747	2-methylcitrate cycle II
CJD35_RS17070	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJD35_RS17070	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJD35_RS17070	PWY-6936	seleno-amino acid biosynthesis
CJD35_RS17070	PWY-702	L-methionine biosynthesis II
CJD35_RS17100	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CJD35_RS17100	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CJD35_RS17100	PWY-7717	CJD35_RS17100
CJD35_RS17100	PWY-7733	CJD35_RS17100
CJD35_RS17100	PWY-7734	CJD35_RS17100
CJD35_RS17100	PWY-7765	CJD35_RS17100
CJD35_RS17195	PWY-381	nitrate reduction II (assimilatory)
CJD35_RS17195	PWY-5675	nitrate reduction V (assimilatory)
CJD35_RS17195	PWY-6549	L-glutamine biosynthesis III
CJD35_RS17195	PWY-6963	ammonia assimilation cycle I
CJD35_RS17195	PWY-6964	ammonia assimilation cycle II
CJD35_RS17380	PWY-5169	cyanurate degradation
CJD35_RS17380	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJD35_RS17395	PWY-4041	&gamma;-glutamyl cycle
CJD35_RS17395	PWY-5826	hypoglycin biosynthesis
CJD35_RS17405	PWY-6832	2-aminoethylphosphonate degradation II
CJD35_RS17420	PWY-5691	urate degradation to allantoin I
CJD35_RS17420	PWY-7394	urate degradation to allantoin II
CJD35_RS17420	PWY-7849	CJD35_RS17420
CJD35_RS17430	PWY-5691	urate degradation to allantoin I
CJD35_RS17430	PWY-7394	urate degradation to allantoin II
CJD35_RS17430	PWY-7849	CJD35_RS17430
CJD35_RS17435	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS17435	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJD35_RS17435	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CJD35_RS17435	PWY-6596	adenosine nucleotides degradation I
CJD35_RS17435	PWY-6606	guanosine nucleotides degradation II
CJD35_RS17435	PWY-6607	guanosine nucleotides degradation I
CJD35_RS17435	PWY-6608	guanosine nucleotides degradation III
CJD35_RS17435	PWY-6999	theophylline degradation
CJD35_RS17440	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS17440	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJD35_RS17440	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CJD35_RS17440	PWY-6596	adenosine nucleotides degradation I
CJD35_RS17440	PWY-6606	guanosine nucleotides degradation II
CJD35_RS17440	PWY-6607	guanosine nucleotides degradation I
CJD35_RS17440	PWY-6608	guanosine nucleotides degradation III
CJD35_RS17440	PWY-6999	theophylline degradation
CJD35_RS17450	PWY-5497	purine nucleobases degradation II (anaerobic)
CJD35_RS17450	PWY-6606	guanosine nucleotides degradation II
CJD35_RS17450	PWY-6608	guanosine nucleotides degradation III
CJD35_RS17450	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJD35_RS17455	PWY-6610	adenine and adenosine salvage IV
CJD35_RS17530	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS17555	PWY-6899	base-degraded thiamin salvage
CJD35_RS17555	PWY-7356	thiamin salvage IV (yeast)
CJD35_RS17655	PWY-723	alkylnitronates degradation
CJD35_RS17805	PWY-6967	methylamine degradation I
CJD35_RS17820	PWY-6967	methylamine degradation I
CJD35_RS17925	PWY-4261	glycerol degradation I
CJD35_RS17930	PWY-4261	glycerol degradation I
CJD35_RS17930	PWY-6118	glycerol-3-phosphate shuttle
CJD35_RS17930	PWY-6952	glycerophosphodiester degradation
CJD35_RS18220	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS18220	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJD35_RS18220	PWY-5057	L-valine degradation II
CJD35_RS18220	PWY-5076	L-leucine degradation III
CJD35_RS18220	PWY-5078	L-isoleucine degradation II
CJD35_RS18220	PWY-5079	L-phenylalanine degradation III
CJD35_RS18220	PWY-5082	L-methionine degradation III
CJD35_RS18220	PWY-5480	pyruvate fermentation to ethanol I
CJD35_RS18220	PWY-5486	pyruvate fermentation to ethanol II
CJD35_RS18220	PWY-5751	phenylethanol biosynthesis
CJD35_RS18220	PWY-6313	serotonin degradation
CJD35_RS18220	PWY-6333	acetaldehyde biosynthesis I
CJD35_RS18220	PWY-6342	noradrenaline and adrenaline degradation
CJD35_RS18220	PWY-6454	vancomycin resistance I
CJD35_RS18220	PWY-6587	pyruvate fermentation to ethanol III
CJD35_RS18220	PWY-6802	salidroside biosynthesis
CJD35_RS18220	PWY-6871	3-methylbutanol biosynthesis
CJD35_RS18220	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS18220	PWY-7013	L-1,2-propanediol degradation
CJD35_RS18220	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS18220	PWY-7118	chitin degradation to ethanol
CJD35_RS18220	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJD35_RS18220	PWY-7798	CJD35_RS18220
CJD35_RS18425	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS18425	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS18425	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS18425	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJD35_RS18775	PWY-5659	GDP-mannose biosynthesis
CJD35_RS18775	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJD35_RS18795	PWY-6749	CMP-legionaminate biosynthesis I
CJD35_RS19130	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS19145	PWY-6700	queuosine biosynthesis
CJD35_RS19410	PWY-5316	nicotine biosynthesis
CJD35_RS19410	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS19410	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJD35_RS19410	PWY-7342	superpathway of nicotine biosynthesis
CJD35_RS19555	PWY-7701	CJD35_RS19555
CJD35_RS19580	PWY-6216	3-chlorobenzoate degradation II (via protocatechuate)
CJD35_RS19580	PWY-6217	3,4-dichlorobenzoate degradation
CJD35_RS19655	PWY-5316	nicotine biosynthesis
CJD35_RS19655	PWY-5381	pyridine nucleotide cycling (plants)
CJD35_RS19655	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJD35_RS19655	PWY-7342	superpathway of nicotine biosynthesis
CJD35_RS19880	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJD35_RS19880	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJD35_RS19990	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJD35_RS20155	PWY-3781	aerobic respiration I (cytochrome c)
CJD35_RS20155	PWY-4521	arsenite oxidation I (respiratory)
CJD35_RS20155	PWY-6692	Fe(II) oxidation
CJD35_RS20155	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJD35_RS20310	PWY-6854	ethylene biosynthesis III (microbes)
CJD35_RS20325	PWY-6700	queuosine biosynthesis
CJD35_RS21340	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJD35_RS21340	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJD35_RS21340	PWY-5057	L-valine degradation II
CJD35_RS21340	PWY-5076	L-leucine degradation III
CJD35_RS21340	PWY-5078	L-isoleucine degradation II
CJD35_RS21340	PWY-5079	L-phenylalanine degradation III
CJD35_RS21340	PWY-5082	L-methionine degradation III
CJD35_RS21340	PWY-5480	pyruvate fermentation to ethanol I
CJD35_RS21340	PWY-5486	pyruvate fermentation to ethanol II
CJD35_RS21340	PWY-5751	phenylethanol biosynthesis
CJD35_RS21340	PWY-6313	serotonin degradation
CJD35_RS21340	PWY-6333	acetaldehyde biosynthesis I
CJD35_RS21340	PWY-6342	noradrenaline and adrenaline degradation
CJD35_RS21340	PWY-6454	vancomycin resistance I
CJD35_RS21340	PWY-6587	pyruvate fermentation to ethanol III
CJD35_RS21340	PWY-6802	salidroside biosynthesis
CJD35_RS21340	PWY-6871	3-methylbutanol biosynthesis
CJD35_RS21340	PWY-6901	superpathway of glucose and xylose degradation
CJD35_RS21340	PWY-7013	L-1,2-propanediol degradation
CJD35_RS21340	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJD35_RS21340	PWY-7118	chitin degradation to ethanol
CJD35_RS21340	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJD35_RS21340	PWY-7798	CJD35_RS21340
CJD35_RS21545	PWY-6823	molybdenum cofactor biosynthesis
CJD35_RS21545	PWY-6891	thiazole biosynthesis II (Bacillus)
CJD35_RS21545	PWY-6892	thiazole biosynthesis I (E. coli)
CJD35_RS21545	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJD35_RS21610	PWY-4202	arsenate detoxification I (glutaredoxin)
CJD35_RS21610	PWY-4621	arsenate detoxification II (glutaredoxin)
CJD35_RS21775	PWY-5659	GDP-mannose biosynthesis
CJD35_RS21775	PWY-7456	mannan degradation
CJD35_RS21775	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CJD35_RS21775	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJD35_RS22160	PWY-3221	dTDP-L-rhamnose biosynthesis II
CJD35_RS22160	PWY-6808	dTDP-D-forosamine biosynthesis
CJD35_RS22160	PWY-6942	dTDP-D-desosamine biosynthesis
CJD35_RS22160	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CJD35_RS22160	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJD35_RS22160	PWY-6974	dTDP-L-olivose biosynthesis
CJD35_RS22160	PWY-6976	dTDP-L-mycarose biosynthesis
CJD35_RS22160	PWY-7104	dTDP-L-megosamine biosynthesis
CJD35_RS22160	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CJD35_RS22160	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CJD35_RS22160	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CJD35_RS22160	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CJD35_RS22160	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CJD35_RS22160	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CJD35_RS22160	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CJD35_RS22160	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CJD35_RS22160	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CJD35_RS22160	PWY-7688	CJD35_RS22160
CJD35_RS22160	PWY-7814	CJD35_RS22160
CJD35_RS22170	PWY-3221	dTDP-L-rhamnose biosynthesis II
CJD35_RS22170	PWY-6808	dTDP-D-forosamine biosynthesis
CJD35_RS22170	PWY-6942	dTDP-D-desosamine biosynthesis
CJD35_RS22170	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CJD35_RS22170	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJD35_RS22170	PWY-6974	dTDP-L-olivose biosynthesis
CJD35_RS22170	PWY-6976	dTDP-L-mycarose biosynthesis
CJD35_RS22170	PWY-7104	dTDP-L-megosamine biosynthesis
CJD35_RS22170	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CJD35_RS22170	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CJD35_RS22170	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CJD35_RS22170	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CJD35_RS22170	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CJD35_RS22170	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CJD35_RS22170	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CJD35_RS22170	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CJD35_RS22170	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CJD35_RS22170	PWY-7688	CJD35_RS22170
CJD35_RS22170	PWY-7814	CJD35_RS22170
CJD35_RS22250	PWY-5659	GDP-mannose biosynthesis
CJD35_RS22250	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)