locus-tag	class	description
CSC55_RS00015	COG2501	S4 domain
CSC55_RS00035	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CSC55_RS00065	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CSC55_RS00075	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CSC55_RS00085	COG0305	Participates in initiation and elongation during chromosome replication
CSC55_RS00120	COG4863	YycH protein
CSC55_RS00130	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CSC55_RS00135	COG0737	Belongs to the 5'-nucleotidase family
CSC55_RS00160	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CSC55_RS00160	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CSC55_RS00200	COG3425	synthase
CSC55_RS00210	COG0584	glycerophosphoryl diester phosphodiesterase
CSC55_RS00215	COG2030	dehydratase
CSC55_RS00265	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CSC55_RS00310	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CSC55_RS00315	COG1353	crispr-associated protein
CSC55_RS00320	COG1421	Csm2 Type III-A
CSC55_RS00325	COG1337	RAMP superfamily
CSC55_RS00330	COG1567	CRISPR-associated RAMP protein, Csm4 family
CSC55_RS00335	COG1332	CRISPR-associated RAMP protein, Csm5 family
CSC55_RS00360	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CSC55_RS00430	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CSC55_RS00435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CSC55_RS00470	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CSC55_RS00530	COG1401	restriction endodeoxyribonuclease activity
CSC55_RS00535	COG4268	DNA restriction-modification system
CSC55_RS00560	COG2814	Major facilitator Superfamily
CSC55_RS00585	COG0456	acetyltransferase
CSC55_RS00620	COG0823	Involved in the tonB-independent uptake of proteins
CSC55_RS00635	COG1473	amidohydrolase
CSC55_RS00645	COG1283	sodium-dependent phosphate transmembrane transporter activity
CSC55_RS00650	COG4716	Myosin-crossreactive antigen
CSC55_RS00660	COG1620	l-lactate permease
CSC55_RS00680	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS00685	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS00690	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CSC55_RS00700	COG2423	ornithine cyclodeaminase activity
CSC55_RS00705	COG4264	IucA IucC family
CSC55_RS00710	COG2814	Major facilitator Superfamily
CSC55_RS00715	COG4264	IucA IucC family
CSC55_RS00720	COG4264	IucA IucC family
CSC55_RS00730	COG0019	diaminopimelate decarboxylase activity
CSC55_RS00735	COG1475	DNA binding
CSC55_RS00760	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CSC55_RS00765	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CSC55_RS00770	COG0438	transferase activity, transferring glycosyl groups
CSC55_RS00805	COG0813	purine-nucleoside phosphorylase activity
CSC55_RS00810	COG2814	Major facilitator Superfamily
CSC55_RS00830	COG3639	organic phosphonate transmembrane transporter activity
CSC55_RS00850	COG0737	Belongs to the 5'-nucleotidase family
CSC55_RS00865	COG1454	alcohol dehydrogenase
CSC55_RS00865	COG1012	belongs to the aldehyde dehydrogenase family
CSC55_RS00890	COG1086	Polysaccharide biosynthesis protein
CSC55_RS00900	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CSC55_RS00930	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CSC55_RS00940	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CSC55_RS00945	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CSC55_RS00955	COG2832	Protein of unknown function (DUF454)
CSC55_RS00990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CSC55_RS00995	COG1960	acyl-CoA dehydrogenase activity
CSC55_RS01000	COG5609	conserved protein (DUF2294)
CSC55_RS01050	COG1114	Component of the transport system for branched-chain amino acids
CSC55_RS01055	COG1335	isochorismatase
CSC55_RS01060	COG3961	Belongs to the TPP enzyme family
CSC55_RS01090	COG1737	Transcriptional regulator
CSC55_RS01115	COG0601	transmembrane transport
CSC55_RS01120	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CSC55_RS01130	COG0405	Gamma-glutamyltransferase
CSC55_RS01145	COG3842	ATPase activity
CSC55_RS01155	COG1175	transmembrane transport
CSC55_RS01160	COG3833	ABC-type maltose transport systems, permease component
CSC55_RS01165	COG0673	inositol 2-dehydrogenase activity
CSC55_RS01170	COG0673	inositol 2-dehydrogenase activity
CSC55_RS01180	COG1755	Isoprenylcysteine carboxyl methyltransferase
CSC55_RS01235	COG0183	Belongs to the thiolase family
CSC55_RS01245	COG1960	acyl-CoA dehydrogenase activity
CSC55_RS01250	COG0318	PFAM AMP-dependent synthetase and ligase
CSC55_RS01270	COG0747	negative chemotaxis
CSC55_RS01275	COG3189	MarR family transcriptional regulator
CSC55_RS01310	COG1263	PTS System
CSC55_RS01310	COG2190	(PTS) system
CSC55_RS01310	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS01315	COG1957	nucleoside hydrolase
CSC55_RS01335	COG3414	Phosphotransferase system galactitol-specific IIB component
CSC55_RS01340	COG3775	system Galactitol-specific IIC component
CSC55_RS01345	COG1063	alcohol dehydrogenase
CSC55_RS01355	COG1063	alcohol dehydrogenase
CSC55_RS01365	COG1063	alcohol dehydrogenase
CSC55_RS01370	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CSC55_RS01385	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CSC55_RS01395	COG1063	alcohol dehydrogenase
CSC55_RS01400	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CSC55_RS01440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CSC55_RS01450	COG2190	(PTS) system
CSC55_RS01450	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS01450	COG1263	PTS System
CSC55_RS01455	COG2723	6-phospho-beta-galactosidase activity
CSC55_RS01465	COG2226	methyltransferase
CSC55_RS01515	COG1131	(ABC) transporter
CSC55_RS01535	COG3942	CHAP domain
CSC55_RS01535	COG1388	LysM domain
CSC55_RS01685	COG1114	Component of the transport system for branched-chain amino acids
CSC55_RS01695	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
CSC55_RS01705	COG0577	efflux transmembrane transporter activity
CSC55_RS01735	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CSC55_RS01740	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CSC55_RS01765	COG3314	Sporulation integral membrane protein YlbJ
CSC55_RS01790	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CSC55_RS01820	COG3037	sugar-specific permease SgaT UlaA
CSC55_RS01830	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CSC55_RS01835	COG3711	transcriptional antiterminator
CSC55_RS01860	COG2271	Major facilitator Superfamily
CSC55_RS01865	COG0346	lactoylglutathione lyase activity
CSC55_RS01870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CSC55_RS01890	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CSC55_RS01895	COG2822	iron ion transport
CSC55_RS01905	COG0672	)-iron permease
CSC55_RS01910	COG0805	protein transport
CSC55_RS01915	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CSC55_RS01925	COG1476	TRANSCRIPTIONal
CSC55_RS01935	COG1131	(ABC) transporter
CSC55_RS01965	COG0646	methionine synthase
CSC55_RS01965	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CSC55_RS01970	COG0626	cystathionine gamma-synthase activity
CSC55_RS01975	COG0626	cystathionine gamma-synthase activity
CSC55_RS01985	COG1475	DNA binding
CSC55_RS01990	COG0668	transmembrane transport
CSC55_RS01995	COG4481	Protein conserved in bacteria
CSC55_RS02000	COG0012	GTP binding
CSC55_RS02100	COG1823	symporter activity
CSC55_RS02135	COG2233	PERMEase
CSC55_RS02175	COG3759	membrane
CSC55_RS02300	COG0523	cobalamin synthesis protein
CSC55_RS02325	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CSC55_RS02335	COG5609	conserved protein (DUF2294)
CSC55_RS02350	COG1647	Serine aminopeptidase, S33
CSC55_RS02360	COG0733	neurotransmitter:sodium symporter activity
CSC55_RS02365	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CSC55_RS02370	COG0626	cystathionine gamma-synthase activity
CSC55_RS02380	COG2011	ABC-type metal ion transport system permease component
CSC55_RS02385	COG1464	Belongs to the NlpA lipoprotein family
CSC55_RS02420	COG0583	DNA-binding transcription factor activity
CSC55_RS02425	COG0067	glutamate synthase
CSC55_RS02425	COG0069	glutamate synthase activity
CSC55_RS02425	COG0070	glutamate synthase
CSC55_RS02430	COG0493	'glutamate synthase
CSC55_RS02440	COG1263	PTS System
CSC55_RS02440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS02445	COG0366	Alpha amylase catalytic
CSC55_RS02450	COG2188	Transcriptional regulator
CSC55_RS02470	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CSC55_RS02505	COG1982	Orn Lys Arg decarboxylase major
CSC55_RS02515	COG3870	Protein conserved in bacteria
CSC55_RS02520	COG0470	DNA polymerase III
CSC55_RS02525	COG1774	PSP1 C-terminal conserved region
CSC55_RS02535	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CSC55_RS02545	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CSC55_RS02555	COG0084	hydrolase, TatD family'
CSC55_RS02560	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CSC55_RS02570	COG4466	Protein conserved in bacteria
CSC55_RS02580	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CSC55_RS02585	COG0251	oxidation-reduction process
CSC55_RS02630	COG2244	polysaccharide biosynthetic process
CSC55_RS02635	COG3956	TIGRFAM MazG family protein
CSC55_RS02640	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CSC55_RS02650	COG1098	S1 RNA binding domain
CSC55_RS02665	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CSC55_RS02690	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CSC55_RS02790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CSC55_RS02810	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CSC55_RS02820	COG3880	PFAM UvrB UvrC protein
CSC55_RS02835	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CSC55_RS02840	COG4956	integral membrane protein (PIN domain superfamily)
CSC55_RS02865	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CSC55_RS02925	COG2813	Specifically methylates the guanine in position
CSC55_RS02965	COG1473	amidohydrolase
CSC55_RS02995	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CSC55_RS03000	COG1428	Deoxynucleoside kinase
CSC55_RS03005	COG1428	Deoxynucleoside kinase
CSC55_RS03015	COG0561	phosphatase activity
CSC55_RS03060	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CSC55_RS03110	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS03140	COG1674	ftsk spoiiie
CSC55_RS03145	COG0433	COG0433 Predicted ATPase
CSC55_RS03165	COG2946	Replication initiation factor
CSC55_RS03250	COG0095	Lipoate-protein ligase
CSC55_RS03255	COG0083	homoserine kinase activity
CSC55_RS03275	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CSC55_RS03315	COG0667	Aldo Keto reductase
CSC55_RS03320	COG0655	NAD(P)H dehydrogenase (quinone) activity
CSC55_RS03330	COG1078	dGTPase activity
CSC55_RS03365	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CSC55_RS03370	COG4139	cobalamin transport
CSC55_RS03465	COG2814	Major facilitator Superfamily
CSC55_RS03475	COG0803	Belongs to the bacterial solute-binding protein 9 family
CSC55_RS03480	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CSC55_RS03485	COG1121	(ABC) transporter
CSC55_RS03490	COG1321	iron dependent repressor
CSC55_RS03510	COG1682	transport, permease protein
CSC55_RS03515	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CSC55_RS03525	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CSC55_RS03530	COG1686	Belongs to the peptidase S11 family
CSC55_RS03535	COG1132	(ABC) transporter
CSC55_RS03540	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CSC55_RS03550	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CSC55_RS03555	COG1120	ATPase activity
CSC55_RS03560	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS03565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS03570	COG2376	Dihydroxyacetone kinase
CSC55_RS03590	COG3949	Membrane
CSC55_RS03615	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CSC55_RS03630	COG1136	(ABC) transporter
CSC55_RS03635	COG0577	efflux transmembrane transporter activity
CSC55_RS03640	COG1392	Phosphate transport regulator
CSC55_RS03645	COG0306	phosphate transporter
CSC55_RS03650	COG3942	CHAP domain
CSC55_RS03650	COG1388	LysM domain
CSC55_RS03660	COG4977	sequence-specific DNA binding
CSC55_RS03660	COG1917	Cupin 2, conserved barrel domain protein
CSC55_RS03690	COG0583	DNA-binding transcription factor activity
CSC55_RS03695	COG2814	Major facilitator Superfamily
CSC55_RS03700	COG2839	Protein conserved in bacteria
CSC55_RS03735	COG1611	Belongs to the LOG family
CSC55_RS03755	COG4988	ABC transporter
CSC55_RS03760	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CSC55_RS03770	COG0523	cobalamin synthesis protein
CSC55_RS03775	COG4989	oxidoreductase activity
CSC55_RS03785	COG0471	metal ion transport
CSC55_RS03790	COG0415	Belongs to the DNA photolyase family
CSC55_RS03820	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CSC55_RS03825	COG1349	DNA-binding transcription factor activity
CSC55_RS03830	COG1105	Belongs to the carbohydrate kinase PfkB family
CSC55_RS03835	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CSC55_RS03835	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CSC55_RS03835	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CSC55_RS03840	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CSC55_RS03845	COG1253	flavin adenine dinucleotide binding
CSC55_RS03850	COG0656	L-ascorbic acid biosynthetic process
CSC55_RS03855	COG0463	Glycosyl transferase, family 2
CSC55_RS03890	COG0720	synthase
CSC55_RS03900	COG0512	Glutamine amidotransferase of anthranilate synthase
CSC55_RS03900	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CSC55_RS03905	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CSC55_RS03935	COG0488	(ABC) transporter
CSC55_RS03940	COG0514	ATP-dependent DNA helicase (RecQ)
CSC55_RS03945	COG1125	glycine betaine transport
CSC55_RS03945	COG0517	IMP dehydrogenase activity
CSC55_RS03950	COG1174	glycine betaine transport
CSC55_RS03975	COG3104	oligopeptide transport
CSC55_RS04005	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CSC55_RS04010	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CSC55_RS04015	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS04020	COG4605	iron ion homeostasis
CSC55_RS04025	COG4604	ABC transporter, ATP-binding protein
CSC55_RS04030	COG4607	ABC-type enterochelin transport system periplasmic component
CSC55_RS04085	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CSC55_RS04090	COG1739	Uncharacterized protein family UPF0029
CSC55_RS04100	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CSC55_RS04105	COG1040	competence protein
CSC55_RS04135	COG1388	LysM domain
CSC55_RS04135	COG3942	CHAP domain
CSC55_RS04195	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CSC55_RS04205	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS04220	COG0281	malic enzyme
CSC55_RS04270	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CSC55_RS04275	COG1647	Serine aminopeptidase, S33
CSC55_RS04280	COG0557	exoribonuclease II activity
CSC55_RS04370	COG5484	DNA packaging
CSC55_RS04370	COG3728	DNA packaging
CSC55_RS04460	COG1278	Cold shock
CSC55_RS04500	COG0406	alpha-ribazole phosphatase activity
CSC55_RS04505	COG1279	arginine transmembrane transporter activity
CSC55_RS04530	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CSC55_RS04535	COG1393	Belongs to the ArsC family
CSC55_RS04550	COG3878	Protein conserved in bacteria
CSC55_RS04560	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CSC55_RS04575	COG2011	ABC-type metal ion transport system permease component
CSC55_RS04580	COG1464	Belongs to the NlpA lipoprotein family
CSC55_RS04605	COG0396	ATPase activity
CSC55_RS04610	COG0719	Fe-S assembly protein
CSC55_RS04620	COG0822	iron-sulfur transferase activity
CSC55_RS04645	COG1253	flavin adenine dinucleotide binding
CSC55_RS04655	COG1801	Protein of unknown function DUF72
CSC55_RS04660	COG0730	response to heat
CSC55_RS04675	COG4470	Protein conserved in bacteria
CSC55_RS04685	COG2445	Protein of unknown function DUF86
CSC55_RS04715	COG1696	Membrane protein involved in D-alanine export
CSC55_RS04725	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CSC55_RS04730	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CSC55_RS04735	COG4837	Protein of unknown function (DUF1462)
CSC55_RS04740	COG1252	NADH dehydrogenase
CSC55_RS04750	COG0316	Belongs to the HesB IscA family
CSC55_RS04760	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CSC55_RS04765	COG2056	Na+-H+ antiporter family
CSC55_RS04770	COG2050	protein possibly involved in aromatic compounds catabolism
CSC55_RS04825	COG1098	S1 RNA binding domain
CSC55_RS04830	COG1902	pentaerythritol trinitrate reductase activity
CSC55_RS04845	COG0584	glycerophosphoryl diester phosphodiesterase
CSC55_RS04865	COG0398	Pfam SNARE associated Golgi protein
CSC55_RS04910	COG0561	phosphatase activity
CSC55_RS04935	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CSC55_RS04950	COG1881	PFAM PEBP family protein
CSC55_RS04980	COG0601	transmembrane transport
CSC55_RS04985	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CSC55_RS04990	COG0444	Belongs to the ABC transporter superfamily
CSC55_RS04995	COG4608	Belongs to the ABC transporter superfamily
CSC55_RS05000	COG4166	transmembrane transport
CSC55_RS05010	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS05015	COG0747	negative chemotaxis
CSC55_RS05020	COG0444	Belongs to the ABC transporter superfamily
CSC55_RS05025	COG4608	Belongs to the ABC transporter superfamily
CSC55_RS05030	COG0601	transmembrane transport
CSC55_RS05035	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CSC55_RS05070	COG1164	Oligoendopeptidase f
CSC55_RS05080	COG2346	COG2346, Truncated hemoglobins
CSC55_RS05095	COG2357	RelA SpoT domain protein
CSC55_RS05105	COG0564	pseudouridine synthase activity
CSC55_RS05110	COG2239	Acts as a magnesium transporter
CSC55_RS05115	COG0475	glutathione-regulated potassium exporter activity
CSC55_RS05115	COG0569	domain protein
CSC55_RS05130	COG0628	permease
CSC55_RS05135	COG1115	amino acid carrier protein
CSC55_RS05185	COG0861	Integral membrane protein TerC family
CSC55_RS05195	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CSC55_RS05200	COG0737	Belongs to the 5'-nucleotidase family
CSC55_RS05215	COG4903	ComK protein
CSC55_RS05230	COG4873	Protein conserved in bacteria
CSC55_RS05290	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CSC55_RS05300	COG2314	TM2 domain
CSC55_RS05305	COG0456	acetyltransferase
CSC55_RS05310	COG1575	Belongs to the MenA family. Type 1 subfamily
CSC55_RS05320	COG1169	isochorismate synthase
CSC55_RS05330	COG2267	carboxylic ester hydrolase activity
CSC55_RS05360	COG0436	Aminotransferase
CSC55_RS05365	COG3594	Acyltransferase
CSC55_RS05395	COG1316	TRANSCRIPTIONal
CSC55_RS05445	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CSC55_RS05460	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CSC55_RS05505	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CSC55_RS05510	COG4172	Belongs to the ABC transporter superfamily
CSC55_RS05515	COG4721	ABC-type cobalt transport system, permease component
CSC55_RS05535	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CSC55_RS05560	COG1271	oxidase subunit
CSC55_RS05565	COG1294	oxidase, subunit
CSC55_RS05570	COG0569	domain protein
CSC55_RS05635	COG1176	ABC-type spermidine putrescine transport system, permease component I
CSC55_RS05640	COG1177	transmembrane transport
CSC55_RS05645	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CSC55_RS05670	COG0483	inositol monophosphate 1-phosphatase activity
CSC55_RS05680	COG1217	gtp-binding protein TYPA
CSC55_RS05690	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CSC55_RS05700	COG0772	Belongs to the SEDS family
CSC55_RS05730	COG2340	Cysteine-rich secretory protein family
CSC55_RS05735	COG3679	Belongs to the UPF0342 family
CSC55_RS05740	COG0584	glycerophosphoryl diester phosphodiesterase
CSC55_RS05755	COG0742	ribosomal rna small subunit methyltransferase
CSC55_RS05875	COG1484	DNA-dependent DNA replication
CSC55_RS05955	COG1783	phage Terminase large subunit
CSC55_RS06080	COG1388	LysM domain
CSC55_RS06080	COG5632	N-Acetylmuramoyl-L-alanine amidase
CSC55_RS06120	COG4509	Sortase family
CSC55_RS06135	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CSC55_RS06170	COG1796	DNA polymerase
CSC55_RS06170	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CSC55_RS06195	COG2009	succinate dehydrogenase
CSC55_RS06200	COG1053	succinate dehydrogenase
CSC55_RS06205	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CSC55_RS06330	COG1288	antiporter activity
CSC55_RS06360	COG1011	Hydrolase
CSC55_RS06385	COG4839	cell division protein FtsL
CSC55_RS06390	COG0768	penicillin binding
CSC55_RS06425	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CSC55_RS06435	COG0762	integral membrane protein
CSC55_RS06440	COG2302	S4 RNA-binding domain
CSC55_RS06445	COG3599	regulation of cell shape
CSC55_RS06455	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS06460	COG2514	catechol 2,3-dioxygenase activity
CSC55_RS06470	COG0564	pseudouridine synthase activity
CSC55_RS06480	COG2233	PERMEase
CSC55_RS06525	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CSC55_RS06540	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CSC55_RS06545	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CSC55_RS06555	COG2314	TM2 domain
CSC55_RS06570	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CSC55_RS06570	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CSC55_RS06580	COG0631	protein serine/threonine phosphatase activity
CSC55_RS06595	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CSC55_RS06610	COG1302	Protein conserved in bacteria
CSC55_RS06660	COG1196	nuclear chromosome segregation
CSC55_RS06665	COG0552	protein localization to endoplasmic reticulum
CSC55_RS06675	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CSC55_RS06730	COG2348	transferase activity, transferring amino-acyl groups
CSC55_RS06735	COG0758	DNA mediated transformation
CSC55_RS06835	COG0195	Participates in both transcription termination and antitermination
CSC55_RS06840	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CSC55_RS06865	COG0196	riboflavin kinase activity
CSC55_RS06895	COG2188	Transcriptional regulator
CSC55_RS06900	COG0612	Peptidase, M16
CSC55_RS06905	COG0612	Peptidase, M16
CSC55_RS06910	COG0300	oxidoreductase activity
CSC55_RS06930	COG1058	Belongs to the CinA family
CSC55_RS06930	COG1546	Belongs to the CinA family
CSC55_RS06955	COG1692	metallophosphoesterase
CSC55_RS06960	COG0674	pyruvate-flavodoxin oxidoreductase activity
CSC55_RS06960	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CSC55_RS06965	COG1013	pyruvate-flavodoxin oxidoreductase activity
CSC55_RS07000	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CSC55_RS07005	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CSC55_RS07030	COG1923	regulation of RNA biosynthetic process
CSC55_RS07040	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CSC55_RS07045	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CSC55_RS07050	COG0789	Transcriptional regulator
CSC55_RS07085	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS07195	COG1131	(ABC) transporter
CSC55_RS07210	COG2197	response regulator
CSC55_RS07225	COG1525	nuclease
CSC55_RS07240	COG0527	aspartate kinase activity
CSC55_RS07245	COG0460	homoserine dehydrogenase
CSC55_RS07250	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CSC55_RS07275	COG0833	amino acid
CSC55_RS07340	COG4846	Membrane protein involved in cytochrome C biogenesis
CSC55_RS07360	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CSC55_RS07370	COG0824	Thioesterase
CSC55_RS07410	COG1115	amino acid carrier protein
CSC55_RS07425	COG0628	permease
CSC55_RS07455	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CSC55_RS07465	COG1363	Peptidase, m42
CSC55_RS07490	COG2946	Replication initiation factor
CSC55_RS07510	COG0433	COG0433 Predicted ATPase
CSC55_RS07515	COG1674	ftsk spoiiie
CSC55_RS07545	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS07555	COG0512	Glutamine amidotransferase of anthranilate synthase
CSC55_RS07640	COG0704	Plays a role in the regulation of phosphate uptake
CSC55_RS07650	COG0581	inorganic phosphate transmembrane transporter activity
CSC55_RS07655	COG0573	inorganic phosphate transmembrane transporter activity
CSC55_RS07670	COG0488	(ABC) transporter
CSC55_RS07675	COG0527	aspartate kinase activity
CSC55_RS07680	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CSC55_RS07755	COG4548	von Willebrand factor, type A
CSC55_RS07760	COG0714	Associated with various cellular activities
CSC55_RS07805	COG0671	phosphoesterase, PA-phosphatase related
CSC55_RS07825	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS07885	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CSC55_RS07905	COG0531	amino acid
CSC55_RS07920	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CSC55_RS07925	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CSC55_RS07945	COG0116	Belongs to the methyltransferase superfamily
CSC55_RS07980	COG4499	WXG100 protein secretion system (Wss), protein YukC
CSC55_RS07980	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CSC55_RS07990	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CSC55_RS07995	COG3935	DnaD domain protein
CSC55_RS08020	COG0438	transferase activity, transferring glycosyl groups
CSC55_RS08025	COG1694	Mazg nucleotide pyrophosphohydrolase
CSC55_RS08030	COG2738	Putative neutral zinc metallopeptidase
CSC55_RS08035	COG4347	Protein of unknown function (DUF1405)
CSC55_RS08070	COG0142	geranyltranstransferase activity
CSC55_RS08205	COG0741	lytic transglycosylase activity
CSC55_RS08205	COG0791	NLP P60 protein
CSC55_RS08235	COG2946	Replication initiation factor
CSC55_RS08245	COG1674	ftsk spoiiie
CSC55_RS08290	COG0492	ferredoxin-NADP+ reductase activity
CSC55_RS08305	COG0514	ATP-dependent DNA helicase (RecQ)
CSC55_RS08315	COG1141	Ferredoxin
CSC55_RS08365	COG0745	RESPONSE REGULATOR receiver
CSC55_RS08370	COG1187	pseudouridine synthase activity
CSC55_RS08395	COG0735	belongs to the Fur family
CSC55_RS08400	COG0494	nUDIX hydrolase
CSC55_RS08405	COG0667	Aldo Keto reductase
CSC55_RS08415	COG4221	oxidoreductase activity
CSC55_RS08430	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CSC55_RS08440	COG0366	Alpha amylase catalytic
CSC55_RS08445	COG1609	Transcriptional regulator
CSC55_RS08485	COG2195	Cleaves the N-terminal amino acid of tripeptides
CSC55_RS08495	COG4129	membrane
CSC55_RS08505	COG0508	dehydrogenase complex catalyzes the overall conversion of
CSC55_RS08510	COG0022	dehydrogenase e1 component
CSC55_RS08515	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CSC55_RS08520	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CSC55_RS08525	COG0497	DNA recombination
CSC55_RS08555	COG1302	Protein conserved in bacteria
CSC55_RS08560	COG0439	Biotin carboxylase
CSC55_RS08565	COG0511	ligase activity, forming carbon-carbon bonds
CSC55_RS08575	COG0006	proline dipeptidase activity
CSC55_RS08590	COG0095	Lipoate-protein ligase
CSC55_RS08595	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CSC55_RS08640	COG4537	Required for transformation and DNA binding
CSC55_RS08645	COG1459	type II secretion system
CSC55_RS08650	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CSC55_RS08655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CSC55_RS08660	COG0011	TIGRFAM Protein of
CSC55_RS08665	COG1940	carbohydrate kinase activity
CSC55_RS08670	COG4483	Protein conserved in bacteria
CSC55_RS08680	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CSC55_RS08690	COG0768	penicillin binding
CSC55_RS08705	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CSC55_RS08710	COG1121	(ABC) transporter
CSC55_RS08720	COG0513	Belongs to the DEAD box helicase family
CSC55_RS08730	COG2384	SAM-dependent methyltransferase
CSC55_RS08750	COG0517	IMP dehydrogenase activity
CSC55_RS08770	COG0295	cytidine deaminase activity
CSC55_RS08785	COG1702	phosphate starvation-inducible protein PhoH
CSC55_RS08800	COG1030	water channel activity
CSC55_RS08810	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CSC55_RS08815	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CSC55_RS08845	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CSC55_RS08865	COG1466	dna polymerase III delta subunit
CSC55_RS08870	COG0658	competence protein
CSC55_RS08870	COG2333	competence protein COMEC
CSC55_RS08875	COG2131	deaminase
CSC55_RS08885	COG2226	methyltransferase
CSC55_RS08890	COG0799	negative regulation of ribosome biogenesis
CSC55_RS08895	COG1713	HD superfamily hydrolase involved in NAD metabolism
CSC55_RS08905	COG1534	Rna-binding protein
CSC55_RS08915	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CSC55_RS08920	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CSC55_RS08950	COG2946	Replication initiation factor
CSC55_RS08970	COG0433	COG0433 Predicted ATPase
CSC55_RS08975	COG1674	ftsk spoiiie
CSC55_RS09005	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS09020	COG3177	Filamentation induced by cAMP protein fic
CSC55_RS09025	COG1914	H( )-stimulated, divalent metal cation uptake system
CSC55_RS09035	COG0439	Biotin carboxylase
CSC55_RS09040	COG0511	ligase activity, forming carbon-carbon bonds
CSC55_RS09045	COG1984	allophanate hydrolase subunit 2
CSC55_RS09050	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CSC55_RS09065	COG0826	peptidase U32
CSC55_RS09070	COG0826	peptidase U32
CSC55_RS09100	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CSC55_RS09115	COG1104	cysteine desulfurase activity
CSC55_RS09120	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CSC55_RS09130	COG3237	CsbD-like
CSC55_RS09135	COG1959	2 iron, 2 sulfur cluster binding
CSC55_RS09140	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CSC55_RS09145	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CSC55_RS09190	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CSC55_RS09190	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CSC55_RS09195	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CSC55_RS09195	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CSC55_RS09200	COG1862	Preprotein translocase
CSC55_RS09240	COG2868	ribosomal protein
CSC55_RS09285	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CSC55_RS09330	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CSC55_RS09340	COG0285	dihydrofolate synthase activity
CSC55_RS09350	COG2818	Glycosylase
CSC55_RS09385	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CSC55_RS09420	COG4112	unkown
CSC55_RS09445	COG0833	amino acid
CSC55_RS09460	COG1484	DNA-dependent DNA replication
CSC55_RS09490	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CSC55_RS09490	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CSC55_RS09500	COG5002	protein histidine kinase activity
CSC55_RS09505	COG0745	RESPONSE REGULATOR receiver
CSC55_RS09520	COG0372	Belongs to the citrate synthase family
CSC55_RS09525	COG1113	amino acid transport
CSC55_RS09550	COG0281	malic enzyme
CSC55_RS09560	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CSC55_RS09565	COG4109	DRTGG domain
CSC55_RS09605	COG0827	DNA restriction-modification system
CSC55_RS09615	COG0730	response to heat
CSC55_RS09625	COG1104	cysteine desulfurase activity
CSC55_RS09640	COG1956	GAF domain-containing protein
CSC55_RS09660	COG0584	glycerophosphoryl diester phosphodiesterase
CSC55_RS09665	COG1764	response to oxidative stress
CSC55_RS09670	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CSC55_RS09675	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CSC55_RS09690	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS09690	COG1263	PTS System
CSC55_RS09695	COG0204	Acyl-transferase
CSC55_RS09700	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CSC55_RS09730	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CSC55_RS09735	COG0454	-acetyltransferase
CSC55_RS09755	COG1605	Chorismate mutase
CSC55_RS09755	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CSC55_RS09780	COG1674	ftsk spoiiie
CSC55_RS09785	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CSC55_RS09795	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CSC55_RS09800	COG1363	Peptidase, m42
CSC55_RS09810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CSC55_RS09820	COG0510	thiamine kinase activity
CSC55_RS09840	COG1187	pseudouridine synthase activity
CSC55_RS09845	COG2244	polysaccharide biosynthetic process
CSC55_RS09850	COG2081	HI0933 family
CSC55_RS09870	COG2814	Major facilitator Superfamily
CSC55_RS09875	COG1242	4 iron, 4 sulfur cluster binding
CSC55_RS09880	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CSC55_RS09890	COG2267	carboxylic ester hydrolase activity
CSC55_RS09925	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CSC55_RS09925	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CSC55_RS09945	COG5632	N-Acetylmuramoyl-L-alanine amidase
CSC55_RS09945	COG4193	domain, Protein
CSC55_RS09945	COG3266	domain, Protein
CSC55_RS09980	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CSC55_RS10000	COG0656	L-ascorbic acid biosynthetic process
CSC55_RS10020	COG1506	peptidase
CSC55_RS10025	COG2816	NAD+ diphosphatase activity
CSC55_RS10120	COG5492	domain, Protein
CSC55_RS10315	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
CSC55_RS10345	COG1131	(ABC) transporter
CSC55_RS10350	COG0537	adenosine 5'-monophosphoramidase activity
CSC55_RS10380	COG0420	3'-5' exonuclease activity
CSC55_RS10405	COG2197	response regulator
CSC55_RS10410	COG2203	Gaf domain
CSC55_RS10410	COG4585	Histidine kinase
CSC55_RS10415	COG0564	pseudouridine synthase activity
CSC55_RS10445	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CSC55_RS10450	COG1126	abc transporter atp-binding protein
CSC55_RS10455	COG0765	amino acid transport
CSC55_RS10620	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CSC55_RS10625	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CSC55_RS10635	COG4129	membrane
CSC55_RS10650	COG1194	a g-specific adenine glycosylase
CSC55_RS10655	COG1988	membrane-bound metal-dependent
CSC55_RS10670	COG1134	teichoic acid transport
CSC55_RS10670	COG1388	LysM domain
CSC55_RS10700	COG0535	radical SAM domain protein
CSC55_RS10705	COG1607	acyl-coa hydrolase
CSC55_RS10710	COG2309	aminopeptidase activity
CSC55_RS10730	COG1295	ribonuclease BN
CSC55_RS10850	COG4851	CamS sex pheromone cAM373 precursor
CSC55_RS10870	COG4496	protein, YerC YecD
CSC55_RS10905	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CSC55_RS10935	COG1335	isochorismatase
CSC55_RS10950	COG1012	belongs to the aldehyde dehydrogenase family
CSC55_RS10960	COG3682	Transcriptional regulator
CSC55_RS10990	COG4974	Belongs to the 'phage' integrase family
CSC55_RS11040	COG1131	(ABC) transporter
CSC55_RS11055	COG1725	Transcriptional regulator
CSC55_RS11130	COG5632	N-Acetylmuramoyl-L-alanine amidase
CSC55_RS11130	COG1388	LysM domain
CSC55_RS11180	COG0739	heme binding
CSC55_RS11230	COG0740	serine-type endopeptidase activity
CSC55_RS11400	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CSC55_RS11455	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CSC55_RS11530	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CSC55_RS11535	COG1621	beta-fructofuranosidase activity
CSC55_RS11540	COG1609	Transcriptional regulator
CSC55_RS11545	COG0004	ammonium transporteR
CSC55_RS11550	COG0425	Belongs to the sulfur carrier protein TusA family
CSC55_RS11555	COG2391	methyltransferase activity
CSC55_RS11565	COG0488	(ABC) transporter
CSC55_RS11575	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CSC55_RS11585	COG0456	acetyltransferase
CSC55_RS11590	COG1214	PFAM Peptidase M22, glycoprotease
CSC55_RS11595	COG0802	atpase or kinase
CSC55_RS11610	COG0028	Belongs to the TPP enzyme family
CSC55_RS11690	COG2183	response to ionizing radiation
CSC55_RS11695	COG1191	sigma factor activity
CSC55_RS11705	COG1366	Belongs to the anti-sigma-factor antagonist family
CSC55_RS11710	COG2208	phosphoserine phosphatase activity
CSC55_RS11745	COG3428	Bacterial PH domain
CSC55_RS11775	COG2205	protein histidine kinase activity
CSC55_RS11780	COG0745	RESPONSE REGULATOR receiver
CSC55_RS11790	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CSC55_RS11800	COG0772	Belongs to the SEDS family
CSC55_RS11820	COG1937	Protein conserved in bacteria
CSC55_RS11830	COG1418	mRNA catabolic process
CSC55_RS11880	COG0629	single-stranded DNA binding
CSC55_RS11965	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CSC55_RS11990	COG0009	L-threonylcarbamoyladenylate synthase
CSC55_RS11995	COG2890	protein-(glutamine-N5) methyltransferase activity
CSC55_RS12020	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CSC55_RS12060	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CSC55_RS12110	COG0813	purine-nucleoside phosphorylase activity
CSC55_RS12115	COG0783	Belongs to the Dps family
CSC55_RS12135	COG1482	cell wall glycoprotein biosynthetic process
CSC55_RS12140	COG0702	epimerase
CSC55_RS12145	COG0640	Transcriptional regulator
CSC55_RS12180	COG0561	phosphatase activity
CSC55_RS12185	COG1119	ATPase activity
CSC55_RS12205	COG3711	transcriptional antiterminator
CSC55_RS12235	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CSC55_RS12295	COG0489	protein tyrosine kinase activity
CSC55_RS12300	COG2814	Major facilitator Superfamily
CSC55_RS12315	COG1272	protein, Hemolysin III
CSC55_RS12325	COG1988	membrane-bound metal-dependent
CSC55_RS12335	COG3314	Sporulation integral membrane protein YlbJ
CSC55_RS12340	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS12345	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CSC55_RS12350	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CSC55_RS12360	COG3457	Alanine racemase
CSC55_RS12365	COG4264	IucA IucC family
CSC55_RS12370	COG2814	Major facilitator Superfamily
CSC55_RS12395	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CSC55_RS12405	COG2130	NADP-dependent
CSC55_RS12475	COG0656	L-ascorbic acid biosynthetic process
CSC55_RS12480	COG0789	Transcriptional regulator
CSC55_RS12490	COG5492	domain, Protein
CSC55_RS12510	COG3527	Alpha-acetolactate decarboxylase
CSC55_RS12515	COG0028	Belongs to the TPP enzyme family
CSC55_RS12610	COG0201	protein transport
CSC55_RS12725	COG2252	PERMEase
CSC55_RS12770	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CSC55_RS12835	COG1763	Mo-molybdopterin cofactor biosynthetic process
CSC55_RS12855	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CSC55_RS12860	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CSC55_RS12865	COG4149	molybdate abc transporter
CSC55_RS12870	COG0725	ABC transporter, periplasmic molybdate-binding protein
CSC55_RS12885	COG1268	BioY protein
CSC55_RS12900	COG1960	acyl-CoA dehydrogenase activity
CSC55_RS12905	COG4413	Urea transporter
CSC55_RS12980	COG1757	Na H antiporter
CSC55_RS12995	COG2826	transposase and inactivated derivatives, IS30 family
CSC55_RS13000	COG3942	CHAP domain
CSC55_RS13075	COG1113	amino acid transport
CSC55_RS13095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CSC55_RS13100	COG0385	Bile acid
CSC55_RS13110	COG1263	PTS System
CSC55_RS13110	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS13115	COG1737	Transcriptional regulator
CSC55_RS13135	COG1028	Short-chain dehydrogenase reductase Sdr
CSC55_RS13140	COG1473	amidohydrolase
CSC55_RS13155	COG0583	DNA-binding transcription factor activity
CSC55_RS13180	COG2258	MOSC domain
CSC55_RS13200	COG1668	transmembrane transport
CSC55_RS13205	COG4152	abc transporter atp-binding protein
CSC55_RS13225	COG0786	glutamate:sodium symporter activity
CSC55_RS13235	COG0598	Magnesium transport protein CorA
CSC55_RS13250	COG0657	acetylesterase activity
CSC55_RS13260	COG2814	Major facilitator Superfamily
CSC55_RS13265	COG1566	PFAM secretion protein HlyD family protein
CSC55_RS13280	COG2814	Major facilitator Superfamily
CSC55_RS13345	COG1131	(ABC) transporter
CSC55_RS13360	COG1620	l-lactate permease
CSC55_RS13380	COG0604	alcohol dehydrogenase
CSC55_RS13410	COG1511	domain protein
CSC55_RS13425	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CSC55_RS13425	COG1263	PTS System
CSC55_RS13440	COG3871	stress protein (general stress protein 26)
CSC55_RS13485	COG0789	Transcriptional regulator
CSC55_RS13505	COG2181	nitrate reductase activity
CSC55_RS13515	COG1140	nitrate reductase beta subunit
CSC55_RS13520	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CSC55_RS13530	COG2146	nitrite reductase [NAD(P)H] activity
CSC55_RS13535	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CSC55_RS13545	COG0454	-acetyltransferase
CSC55_RS13550	COG2116	formate transmembrane transporter activity
CSC55_RS13565	COG3443	Belongs to the bacterial solute-binding protein 9 family
CSC55_RS13565	COG0803	Belongs to the bacterial solute-binding protein 9 family
CSC55_RS13600	COG1126	abc transporter atp-binding protein
CSC55_RS13605	COG0765	amino acid transport
CSC55_RS13610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CSC55_RS13615	COG2814	Major facilitator Superfamily
CSC55_RS13635	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CSC55_RS13685	COG0156	8-amino-7-oxononanoate synthase activity
CSC55_RS13695	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CSC55_RS13700	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CSC55_RS13715	COG1132	(ABC) transporter
CSC55_RS13720	COG2375	cellular response to nickel ion
CSC55_RS13720	COG1132	(ABC) transporter
CSC55_RS13740	COG1929	Belongs to the glycerate kinase type-1 family
CSC55_RS13750	COG2814	Major facilitator Superfamily
CSC55_RS13770	COG1113	amino acid transport
CSC55_RS13785	COG0531	amino acid
CSC55_RS13805	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CSC55_RS13815	COG1174	glycine betaine transport
CSC55_RS13825	COG1174	glycine betaine transport
CSC55_RS13845	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
CSC55_RS13850	COG0531	amino acid
CSC55_RS13855	COG2272	Belongs to the type-B carboxylesterase lipase family
CSC55_RS13860	COG2814	Major facilitator Superfamily
CSC55_RS13865	COG0390	transport system, permease component
CSC55_RS13870	COG4619	ABC transporter
CSC55_RS13875	COG1363	Peptidase, m42
CSC55_RS13895	COG4808	Protein conserved in bacteria
CSC55_RS13900	COG0069	glutamate synthase activity
CSC55_RS13915	COG1124	(ABC) transporter
CSC55_RS13925	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CSC55_RS13930	COG0601	transmembrane transport
CSC55_RS13935	COG0747	negative chemotaxis
CSC55_RS13955	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CSC55_RS13960	COG1028	Short-chain dehydrogenase reductase Sdr
CSC55_RS13965	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CSC55_RS13970	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CSC55_RS14050	COG0494	nUDIX hydrolase
CSC55_RS14105	COG1070	Carbohydrate kinase
CSC55_RS14110	COG1802	Transcriptional regulator
CSC55_RS14115	COG0789	Transcriptional regulator
CSC55_RS14120	COG2357	RelA SpoT domain protein
CSC55_RS14125	COG4876	unkown
CSC55_RS14135	COG2271	Major facilitator Superfamily
CSC55_RS14140	COG0586	Pfam SNARE associated Golgi protein
CSC55_RS14145	COG1279	arginine transmembrane transporter activity
CSC55_RS14165	COG1131	(ABC) transporter
CSC55_RS14185	COG0400	carboxylic ester hydrolase activity
CSC55_RS14190	COG0346	lactoylglutathione lyase activity
CSC55_RS14195	COG1846	Transcriptional regulator
CSC55_RS14205	COG2514	catechol 2,3-dioxygenase activity
CSC55_RS14225	COG0561	phosphatase activity
CSC55_RS14230	COG3764	Sortase (surface protein transpeptidase)
CSC55_RS14250	COG1760	l-serine dehydratase
CSC55_RS14255	COG1760	l-serine dehydratase
CSC55_RS14270	COG0697	spore germination
CSC55_RS14275	COG0657	acetylesterase activity
CSC55_RS14295	COG0028	Belongs to the TPP enzyme family
CSC55_RS14310	COG0583	DNA-binding transcription factor activity
CSC55_RS14320	COG3942	CHAP domain
CSC55_RS14330	COG3425	synthase
CSC55_RS14335	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CSC55_RS14360	COG2409	Drug exporters of the RND superfamily
CSC55_RS14410	COG0436	Aminotransferase
CSC55_RS14545	COG3001	Fructosamine kinase
CSC55_RS14550	COG0167	dihydroorotate dehydrogenase activity
CSC55_RS14600	COG3527	Alpha-acetolactate decarboxylase
CSC55_RS14615	COG0531	amino acid
CSC55_RS14645	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CSC55_RS14665	COG1012	belongs to the aldehyde dehydrogenase family
CSC55_RS14675	COG1510	regulation of RNA biosynthetic process
CSC55_RS14680	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CSC55_RS14705	COG2851	Citrate transporter
CSC55_RS14720	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CSC55_RS14730	COG0386	Belongs to the glutathione peroxidase family
CSC55_RS14755	COG1136	(ABC) transporter
CSC55_RS14760	COG2205	protein histidine kinase activity
CSC55_RS14765	COG0745	RESPONSE REGULATOR receiver
CSC55_RS14775	COG1785	Belongs to the alkaline phosphatase family
CSC55_RS14785	COG1846	Transcriptional regulator
CSC55_RS14830	COG1438	arginine binding
CSC55_RS14850	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CSC55_RS14850	COG3711	transcriptional antiterminator
CSC55_RS14855	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CSC55_RS14855	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CSC55_RS14855	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CSC55_RS14860	COG1482	cell wall glycoprotein biosynthetic process
CSC55_RS14870	COG1705	Flagellar rod assembly protein muramidase FlgJ
CSC55_RS14870	COG3942	CHAP domain
CSC55_RS14875	COG1535	isochorismatase
CSC55_RS14875	COG3433	isochorismatase activity
CSC55_RS14890	COG0438	transferase activity, transferring glycosyl groups
CSC55_RS14905	COG1073	alpha beta
CSC55_RS14925	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CSC55_RS14950	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CSC55_RS15040	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CSC55_RS15120	COG0471	metal ion transport
CSC55_RS15125	COG2962	Rard protein
CSC55_RS15135	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CSC55_RS15150	COG1136	(ABC) transporter
CSC55_RS15155	COG0577	efflux transmembrane transporter activity
CSC55_RS15180	COG1404	Belongs to the peptidase S8 family
CSC55_RS15185	COG1278	Cold shock
CSC55_RS15205	COG1475	DNA binding