locus-tag	class	description
FFX42_RS00015	COG2501	S4 domain
FFX42_RS00035	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FFX42_RS00060	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FFX42_RS00070	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
FFX42_RS00080	COG0305	Participates in initiation and elongation during chromosome replication
FFX42_RS00110	COG4863	YycH protein
FFX42_RS00120	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FFX42_RS00125	COG0737	Belongs to the 5'-nucleotidase family
FFX42_RS00180	COG0584	glycerophosphoryl diester phosphodiesterase
FFX42_RS00185	COG2030	dehydratase
FFX42_RS00210	COG1940	carbohydrate kinase activity
FFX42_RS00210	COG1846	Transcriptional regulator
FFX42_RS00220	COG2210	Belongs to the sulfur carrier protein TusA family
FFX42_RS00225	COG1937	Protein conserved in bacteria
FFX42_RS00230	COG0730	response to heat
FFX42_RS00240	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FFX42_RS00280	COG2003	Belongs to the UPF0758 family
FFX42_RS00335	COG0745	RESPONSE REGULATOR receiver
FFX42_RS00340	COG2205	protein histidine kinase activity
FFX42_RS00415	COG0730	response to heat
FFX42_RS00420	COG1937	Protein conserved in bacteria
FFX42_RS00425	COG2210	Belongs to the sulfur carrier protein TusA family
FFX42_RS00430	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FFX42_RS00485	COG0823	Involved in the tonB-independent uptake of proteins
FFX42_RS00515	COG1473	amidohydrolase
FFX42_RS00525	COG1283	sodium-dependent phosphate transmembrane transporter activity
FFX42_RS00530	COG4716	Myosin-crossreactive antigen
FFX42_RS00535	COG0697	spore germination
FFX42_RS00550	COG1620	l-lactate permease
FFX42_RS00565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS00570	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS00575	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FFX42_RS00585	COG2423	ornithine cyclodeaminase activity
FFX42_RS00590	COG4264	IucA IucC family
FFX42_RS00595	COG2814	Major facilitator Superfamily
FFX42_RS00600	COG4264	IucA IucC family
FFX42_RS00605	COG4264	IucA IucC family
FFX42_RS00615	COG0019	diaminopimelate decarboxylase activity
FFX42_RS00620	COG1475	DNA binding
FFX42_RS00640	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FFX42_RS00645	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FFX42_RS00650	COG0438	transferase activity, transferring glycosyl groups
FFX42_RS00680	COG0813	purine-nucleoside phosphorylase activity
FFX42_RS00685	COG2814	Major facilitator Superfamily
FFX42_RS00705	COG3639	organic phosphonate transmembrane transporter activity
FFX42_RS00725	COG0737	Belongs to the 5'-nucleotidase family
FFX42_RS00740	COG1454	alcohol dehydrogenase
FFX42_RS00740	COG1012	belongs to the aldehyde dehydrogenase family
FFX42_RS00765	COG1086	Polysaccharide biosynthesis protein
FFX42_RS00775	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FFX42_RS00805	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FFX42_RS00815	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FFX42_RS00820	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FFX42_RS00830	COG2832	Protein of unknown function (DUF454)
FFX42_RS00865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FFX42_RS00870	COG1960	acyl-CoA dehydrogenase activity
FFX42_RS00875	COG5609	conserved protein (DUF2294)
FFX42_RS00925	COG1114	Component of the transport system for branched-chain amino acids
FFX42_RS00930	COG1335	isochorismatase
FFX42_RS00935	COG3961	Belongs to the TPP enzyme family
FFX42_RS00965	COG1737	Transcriptional regulator
FFX42_RS00990	COG1136	(ABC) transporter
FFX42_RS00995	COG0577	efflux transmembrane transporter activity
FFX42_RS00995	COG1136	(ABC) transporter
FFX42_RS01015	COG1131	(ABC) transporter
FFX42_RS01030	COG0601	transmembrane transport
FFX42_RS01035	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FFX42_RS01045	COG0405	Gamma-glutamyltransferase
FFX42_RS01065	COG3842	ATPase activity
FFX42_RS01075	COG1175	transmembrane transport
FFX42_RS01080	COG3833	ABC-type maltose transport systems, permease component
FFX42_RS01085	COG0673	inositol 2-dehydrogenase activity
FFX42_RS01090	COG0673	inositol 2-dehydrogenase activity
FFX42_RS01100	COG1755	Isoprenylcysteine carboxyl methyltransferase
FFX42_RS01155	COG0183	Belongs to the thiolase family
FFX42_RS01165	COG1960	acyl-CoA dehydrogenase activity
FFX42_RS01170	COG0318	PFAM AMP-dependent synthetase and ligase
FFX42_RS01185	COG0747	negative chemotaxis
FFX42_RS01190	COG3189	MarR family transcriptional regulator
FFX42_RS01215	COG2190	(PTS) system
FFX42_RS01215	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS01215	COG1263	PTS System
FFX42_RS01220	COG1957	nucleoside hydrolase
FFX42_RS01240	COG3414	Phosphotransferase system galactitol-specific IIB component
FFX42_RS01245	COG3775	system Galactitol-specific IIC component
FFX42_RS01250	COG1063	alcohol dehydrogenase
FFX42_RS01260	COG1063	alcohol dehydrogenase
FFX42_RS01270	COG1063	alcohol dehydrogenase
FFX42_RS01275	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FFX42_RS01280	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FFX42_RS01290	COG1063	alcohol dehydrogenase
FFX42_RS01295	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FFX42_RS01330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FFX42_RS01335	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS01335	COG1263	PTS System
FFX42_RS01335	COG2190	(PTS) system
FFX42_RS01340	COG2723	6-phospho-beta-galactosidase activity
FFX42_RS01345	COG2226	methyltransferase
FFX42_RS01400	COG1131	(ABC) transporter
FFX42_RS01420	COG1388	LysM domain
FFX42_RS01420	COG3942	CHAP domain
FFX42_RS01540	COG1114	Component of the transport system for branched-chain amino acids
FFX42_RS01550	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
FFX42_RS01560	COG0577	efflux transmembrane transporter activity
FFX42_RS01590	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FFX42_RS01595	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FFX42_RS01620	COG3314	Sporulation integral membrane protein YlbJ
FFX42_RS01645	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FFX42_RS01675	COG3037	sugar-specific permease SgaT UlaA
FFX42_RS01685	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FFX42_RS01690	COG3711	transcriptional antiterminator
FFX42_RS01710	COG2271	Major facilitator Superfamily
FFX42_RS01715	COG0346	lactoylglutathione lyase activity
FFX42_RS01720	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FFX42_RS01725	COG0431	NADPH-dependent FMN reductase
FFX42_RS01735	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FFX42_RS01740	COG2822	iron ion transport
FFX42_RS01750	COG0672	)-iron permease
FFX42_RS01755	COG0805	protein transport
FFX42_RS01760	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FFX42_RS01770	COG1476	TRANSCRIPTIONal
FFX42_RS01780	COG1131	(ABC) transporter
FFX42_RS01810	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FFX42_RS01810	COG0646	methionine synthase
FFX42_RS01815	COG0626	cystathionine gamma-synthase activity
FFX42_RS01820	COG0626	cystathionine gamma-synthase activity
FFX42_RS01830	COG1475	DNA binding
FFX42_RS01835	COG0668	transmembrane transport
FFX42_RS01840	COG4481	Protein conserved in bacteria
FFX42_RS01845	COG0012	GTP binding
FFX42_RS01945	COG1823	symporter activity
FFX42_RS01980	COG2233	PERMEase
FFX42_RS02015	COG3759	membrane
FFX42_RS02175	COG0523	cobalamin synthesis protein
FFX42_RS02200	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FFX42_RS02210	COG5609	conserved protein (DUF2294)
FFX42_RS02225	COG1647	Serine aminopeptidase, S33
FFX42_RS02230	COG0733	neurotransmitter:sodium symporter activity
FFX42_RS02235	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FFX42_RS02240	COG0626	cystathionine gamma-synthase activity
FFX42_RS02250	COG2011	ABC-type metal ion transport system permease component
FFX42_RS02255	COG1464	Belongs to the NlpA lipoprotein family
FFX42_RS02290	COG0583	DNA-binding transcription factor activity
FFX42_RS02300	COG0493	'glutamate synthase
FFX42_RS02310	COG1263	PTS System
FFX42_RS02310	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS02315	COG0366	Alpha amylase catalytic
FFX42_RS02320	COG2188	Transcriptional regulator
FFX42_RS02340	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FFX42_RS02380	COG1982	Orn Lys Arg decarboxylase major
FFX42_RS02390	COG3870	Protein conserved in bacteria
FFX42_RS02395	COG0470	DNA polymerase III
FFX42_RS02400	COG1774	PSP1 C-terminal conserved region
FFX42_RS02410	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FFX42_RS02420	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FFX42_RS02430	COG0084	hydrolase, TatD family'
FFX42_RS02435	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FFX42_RS02445	COG4466	Protein conserved in bacteria
FFX42_RS02455	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FFX42_RS02460	COG0251	oxidation-reduction process
FFX42_RS02500	COG2244	polysaccharide biosynthetic process
FFX42_RS02505	COG3956	TIGRFAM MazG family protein
FFX42_RS02510	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FFX42_RS02520	COG1098	S1 RNA binding domain
FFX42_RS02535	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FFX42_RS02560	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FFX42_RS02655	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FFX42_RS02670	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FFX42_RS02680	COG3880	PFAM UvrB UvrC protein
FFX42_RS02695	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FFX42_RS02700	COG4956	integral membrane protein (PIN domain superfamily)
FFX42_RS02720	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
FFX42_RS02780	COG2813	Specifically methylates the guanine in position
FFX42_RS02820	COG1473	amidohydrolase
FFX42_RS02850	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FFX42_RS02855	COG1428	Deoxynucleoside kinase
FFX42_RS02860	COG1428	Deoxynucleoside kinase
FFX42_RS02870	COG0561	phosphatase activity
FFX42_RS02910	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FFX42_RS02925	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
FFX42_RS03025	COG0095	Lipoate-protein ligase
FFX42_RS03030	COG0083	homoserine kinase activity
FFX42_RS03050	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FFX42_RS03085	COG0667	Aldo Keto reductase
FFX42_RS03095	COG0655	NAD(P)H dehydrogenase (quinone) activity
FFX42_RS03105	COG1078	dGTPase activity
FFX42_RS03145	COG4139	cobalamin transport
FFX42_RS03195	COG4974	Belongs to the 'phage' integrase family
FFX42_RS03245	COG0803	Belongs to the bacterial solute-binding protein 9 family
FFX42_RS03250	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FFX42_RS03255	COG1121	(ABC) transporter
FFX42_RS03260	COG1321	iron dependent repressor
FFX42_RS03270	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
FFX42_RS03280	COG1682	transport, permease protein
FFX42_RS03285	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FFX42_RS03295	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FFX42_RS03300	COG1686	Belongs to the peptidase S11 family
FFX42_RS03305	COG1132	(ABC) transporter
FFX42_RS03310	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FFX42_RS03320	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FFX42_RS03325	COG1120	ATPase activity
FFX42_RS03330	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS03335	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS03340	COG2376	Dihydroxyacetone kinase
FFX42_RS03350	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
FFX42_RS03360	COG3949	Membrane
FFX42_RS03380	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FFX42_RS03395	COG1136	(ABC) transporter
FFX42_RS03400	COG0577	efflux transmembrane transporter activity
FFX42_RS03410	COG1392	Phosphate transport regulator
FFX42_RS03415	COG0306	phosphate transporter
FFX42_RS03420	COG3942	CHAP domain
FFX42_RS03420	COG1388	LysM domain
FFX42_RS03430	COG4977	sequence-specific DNA binding
FFX42_RS03430	COG1917	Cupin 2, conserved barrel domain protein
FFX42_RS03460	COG0583	DNA-binding transcription factor activity
FFX42_RS03465	COG2814	Major facilitator Superfamily
FFX42_RS03470	COG2839	Protein conserved in bacteria
FFX42_RS03500	COG1611	Belongs to the LOG family
FFX42_RS03520	COG4988	ABC transporter
FFX42_RS03525	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FFX42_RS03535	COG0523	cobalamin synthesis protein
FFX42_RS03540	COG4989	oxidoreductase activity
FFX42_RS03550	COG0471	metal ion transport
FFX42_RS03555	COG0415	Belongs to the DNA photolyase family
FFX42_RS03585	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FFX42_RS03590	COG1349	DNA-binding transcription factor activity
FFX42_RS03595	COG1105	Belongs to the carbohydrate kinase PfkB family
FFX42_RS03600	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FFX42_RS03600	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FFX42_RS03600	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FFX42_RS03605	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FFX42_RS03610	COG1253	flavin adenine dinucleotide binding
FFX42_RS03615	COG0656	L-ascorbic acid biosynthetic process
FFX42_RS03620	COG0463	Glycosyl transferase, family 2
FFX42_RS03655	COG0720	synthase
FFX42_RS03665	COG0512	Glutamine amidotransferase of anthranilate synthase
FFX42_RS03665	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FFX42_RS03670	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FFX42_RS03700	COG0488	(ABC) transporter
FFX42_RS03705	COG0514	ATP-dependent DNA helicase (RecQ)
FFX42_RS03710	COG0517	IMP dehydrogenase activity
FFX42_RS03710	COG1125	glycine betaine transport
FFX42_RS03715	COG1174	glycine betaine transport
FFX42_RS03745	COG3104	oligopeptide transport
FFX42_RS03775	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FFX42_RS03780	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FFX42_RS03790	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS03795	COG4605	iron ion homeostasis
FFX42_RS03800	COG4604	ABC transporter, ATP-binding protein
FFX42_RS03805	COG4607	ABC-type enterochelin transport system periplasmic component
FFX42_RS03860	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FFX42_RS03865	COG1739	Uncharacterized protein family UPF0029
FFX42_RS03875	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
FFX42_RS03880	COG1040	competence protein
FFX42_RS03910	COG3942	CHAP domain
FFX42_RS03910	COG1388	LysM domain
FFX42_RS03965	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FFX42_RS04035	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FFX42_RS04040	COG1647	Serine aminopeptidase, S33
FFX42_RS04045	COG0557	exoribonuclease II activity
FFX42_RS04120	COG1278	Cold shock
FFX42_RS04160	COG0406	alpha-ribazole phosphatase activity
FFX42_RS04165	COG1279	arginine transmembrane transporter activity
FFX42_RS04195	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FFX42_RS04200	COG1393	Belongs to the ArsC family
FFX42_RS04215	COG3878	Protein conserved in bacteria
FFX42_RS04225	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FFX42_RS04240	COG2011	ABC-type metal ion transport system permease component
FFX42_RS04245	COG1464	Belongs to the NlpA lipoprotein family
FFX42_RS04260	COG0396	ATPase activity
FFX42_RS04265	COG0719	Fe-S assembly protein
FFX42_RS04275	COG0822	iron-sulfur transferase activity
FFX42_RS04310	COG1396	sequence-specific DNA binding
FFX42_RS04385	COG1484	DNA-dependent DNA replication
FFX42_RS04615	COG1388	LysM domain
FFX42_RS04615	COG0860	N-Acetylmuramoyl-L-alanine amidase
FFX42_RS04655	COG1253	flavin adenine dinucleotide binding
FFX42_RS04670	COG1801	Protein of unknown function DUF72
FFX42_RS04675	COG0730	response to heat
FFX42_RS04690	COG4470	Protein conserved in bacteria
FFX42_RS04705	COG2445	Protein of unknown function DUF86
FFX42_RS04735	COG1696	Membrane protein involved in D-alanine export
FFX42_RS04745	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FFX42_RS04750	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FFX42_RS04755	COG4837	Protein of unknown function (DUF1462)
FFX42_RS04760	COG1252	NADH dehydrogenase
FFX42_RS04770	COG0316	Belongs to the HesB IscA family
FFX42_RS04780	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FFX42_RS04785	COG2056	Na+-H+ antiporter family
FFX42_RS04790	COG2050	protein possibly involved in aromatic compounds catabolism
FFX42_RS04845	COG1098	S1 RNA binding domain
FFX42_RS04850	COG1902	pentaerythritol trinitrate reductase activity
FFX42_RS04865	COG0584	glycerophosphoryl diester phosphodiesterase
FFX42_RS04885	COG0398	Pfam SNARE associated Golgi protein
FFX42_RS04925	COG0561	phosphatase activity
FFX42_RS04950	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FFX42_RS04965	COG1881	PFAM PEBP family protein
FFX42_RS04995	COG0601	transmembrane transport
FFX42_RS05000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FFX42_RS05005	COG0444	Belongs to the ABC transporter superfamily
FFX42_RS05010	COG4608	Belongs to the ABC transporter superfamily
FFX42_RS05015	COG4166	transmembrane transport
FFX42_RS05020	COG0747	negative chemotaxis
FFX42_RS05025	COG0444	Belongs to the ABC transporter superfamily
FFX42_RS05030	COG4608	Belongs to the ABC transporter superfamily
FFX42_RS05035	COG0601	transmembrane transport
FFX42_RS05040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FFX42_RS05065	COG1164	Oligoendopeptidase f
FFX42_RS05075	COG2346	COG2346, Truncated hemoglobins
FFX42_RS05090	COG2357	RelA SpoT domain protein
FFX42_RS05100	COG0564	pseudouridine synthase activity
FFX42_RS05105	COG2239	Acts as a magnesium transporter
FFX42_RS05110	COG0475	glutathione-regulated potassium exporter activity
FFX42_RS05110	COG0569	domain protein
FFX42_RS05120	COG0628	permease
FFX42_RS05125	COG1115	amino acid carrier protein
FFX42_RS05165	COG0861	Integral membrane protein TerC family
FFX42_RS05175	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FFX42_RS05180	COG0737	Belongs to the 5'-nucleotidase family
FFX42_RS05195	COG4903	ComK protein
FFX42_RS05210	COG4873	Protein conserved in bacteria
FFX42_RS05265	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FFX42_RS05275	COG2314	TM2 domain
FFX42_RS05280	COG0456	acetyltransferase
FFX42_RS05285	COG1575	Belongs to the MenA family. Type 1 subfamily
FFX42_RS05295	COG1169	isochorismate synthase
FFX42_RS05305	COG2267	carboxylic ester hydrolase activity
FFX42_RS05330	COG0436	Aminotransferase
FFX42_RS05335	COG3594	Acyltransferase
FFX42_RS05365	COG1316	TRANSCRIPTIONal
FFX42_RS05410	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FFX42_RS05425	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FFX42_RS05465	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FFX42_RS05470	COG4172	Belongs to the ABC transporter superfamily
FFX42_RS05475	COG4721	ABC-type cobalt transport system, permease component
FFX42_RS05500	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FFX42_RS05520	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FFX42_RS05525	COG1271	oxidase subunit
FFX42_RS05530	COG1294	oxidase, subunit
FFX42_RS05535	COG0569	domain protein
FFX42_RS05600	COG1176	ABC-type spermidine putrescine transport system, permease component I
FFX42_RS05605	COG1177	transmembrane transport
FFX42_RS05610	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FFX42_RS05635	COG0483	inositol monophosphate 1-phosphatase activity
FFX42_RS05645	COG1217	gtp-binding protein TYPA
FFX42_RS05655	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FFX42_RS05665	COG0772	Belongs to the SEDS family
FFX42_RS05695	COG3679	Belongs to the UPF0342 family
FFX42_RS05715	COG0742	ribosomal rna small subunit methyltransferase
FFX42_RS05775	COG4509	Sortase family
FFX42_RS05790	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FFX42_RS05820	COG1796	DNA polymerase
FFX42_RS05820	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FFX42_RS05845	COG2009	succinate dehydrogenase
FFX42_RS05850	COG1053	succinate dehydrogenase
FFX42_RS05855	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FFX42_RS05975	COG1288	antiporter activity
FFX42_RS06010	COG1011	Hydrolase
FFX42_RS06035	COG4839	cell division protein FtsL
FFX42_RS06040	COG0768	penicillin binding
FFX42_RS06055	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FFX42_RS06060	COG0849	cell division
FFX42_RS06075	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FFX42_RS06085	COG0762	integral membrane protein
FFX42_RS06090	COG2302	S4 RNA-binding domain
FFX42_RS06095	COG3599	regulation of cell shape
FFX42_RS06105	COG2514	catechol 2,3-dioxygenase activity
FFX42_RS06125	COG0564	pseudouridine synthase activity
FFX42_RS06135	COG2233	PERMEase
FFX42_RS06180	COG1293	RNA-binding protein homologous to eukaryotic snRNP
FFX42_RS06195	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FFX42_RS06200	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FFX42_RS06210	COG2314	TM2 domain
FFX42_RS06225	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FFX42_RS06225	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FFX42_RS06235	COG0631	protein serine/threonine phosphatase activity
FFX42_RS06250	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FFX42_RS06265	COG1302	Protein conserved in bacteria
FFX42_RS06310	COG1196	nuclear chromosome segregation
FFX42_RS06315	COG0552	protein localization to endoplasmic reticulum
FFX42_RS06325	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FFX42_RS06380	COG2348	transferase activity, transferring amino-acyl groups
FFX42_RS06480	COG0195	Participates in both transcription termination and antitermination
FFX42_RS06485	COG2740	Nucleic-acid-binding protein implicated in transcription termination
FFX42_RS06510	COG0196	riboflavin kinase activity
FFX42_RS06535	COG2188	Transcriptional regulator
FFX42_RS06540	COG0612	Peptidase, M16
FFX42_RS06545	COG0612	Peptidase, M16
FFX42_RS06550	COG0300	oxidoreductase activity
FFX42_RS06570	COG1546	Belongs to the CinA family
FFX42_RS06570	COG1058	Belongs to the CinA family
FFX42_RS06590	COG1692	metallophosphoesterase
FFX42_RS06595	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
FFX42_RS06595	COG0674	pyruvate-flavodoxin oxidoreductase activity
FFX42_RS06600	COG1013	pyruvate-flavodoxin oxidoreductase activity
FFX42_RS06635	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FFX42_RS06640	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FFX42_RS06665	COG1923	regulation of RNA biosynthetic process
FFX42_RS06675	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FFX42_RS06680	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
FFX42_RS06685	COG0789	Transcriptional regulator
FFX42_RS06770	COG1131	(ABC) transporter
FFX42_RS06785	COG2197	response regulator
FFX42_RS06795	COG1525	nuclease
FFX42_RS06810	COG0527	aspartate kinase activity
FFX42_RS06815	COG0460	homoserine dehydrogenase
FFX42_RS06820	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FFX42_RS06845	COG0833	amino acid
FFX42_RS06875	COG2340	Cysteine-rich secretory protein family
FFX42_RS06910	COG4846	Membrane protein involved in cytochrome C biogenesis
FFX42_RS06930	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FFX42_RS06945	COG0824	Thioesterase
FFX42_RS06975	COG1115	amino acid carrier protein
FFX42_RS06990	COG0628	permease
FFX42_RS07015	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FFX42_RS07025	COG1363	Peptidase, m42
FFX42_RS07030	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FFX42_RS07035	COG0512	Glutamine amidotransferase of anthranilate synthase
FFX42_RS07080	COG0561	phosphatase activity
FFX42_RS07125	COG0704	Plays a role in the regulation of phosphate uptake
FFX42_RS07135	COG0581	inorganic phosphate transmembrane transporter activity
FFX42_RS07140	COG0573	inorganic phosphate transmembrane transporter activity
FFX42_RS07160	COG0488	(ABC) transporter
FFX42_RS07165	COG0527	aspartate kinase activity
FFX42_RS07170	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FFX42_RS07245	COG4548	von Willebrand factor, type A
FFX42_RS07250	COG0714	Associated with various cellular activities
FFX42_RS07295	COG0671	phosphoesterase, PA-phosphatase related
FFX42_RS07370	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FFX42_RS07390	COG0531	amino acid
FFX42_RS07405	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FFX42_RS07410	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FFX42_RS07425	COG0116	Belongs to the methyltransferase superfamily
FFX42_RS07465	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FFX42_RS07465	COG4499	WXG100 protein secretion system (Wss), protein YukC
FFX42_RS07475	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FFX42_RS07480	COG3935	DnaD domain protein
FFX42_RS07505	COG0438	transferase activity, transferring glycosyl groups
FFX42_RS07510	COG1694	Mazg nucleotide pyrophosphohydrolase
FFX42_RS07515	COG2738	Putative neutral zinc metallopeptidase
FFX42_RS07520	COG4347	Protein of unknown function (DUF1405)
FFX42_RS07560	COG0142	geranyltranstransferase activity
FFX42_RS07615	COG0492	ferredoxin-NADP+ reductase activity
FFX42_RS07630	COG0514	ATP-dependent DNA helicase (RecQ)
FFX42_RS07640	COG1141	Ferredoxin
FFX42_RS07685	COG0745	RESPONSE REGULATOR receiver
FFX42_RS07690	COG1187	pseudouridine synthase activity
FFX42_RS07715	COG0735	belongs to the Fur family
FFX42_RS07720	COG0494	nUDIX hydrolase
FFX42_RS07725	COG0667	Aldo Keto reductase
FFX42_RS07735	COG4221	oxidoreductase activity
FFX42_RS07750	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FFX42_RS07760	COG0366	Alpha amylase catalytic
FFX42_RS07765	COG1609	Transcriptional regulator
FFX42_RS07790	COG2195	Cleaves the N-terminal amino acid of tripeptides
FFX42_RS07800	COG4129	membrane
FFX42_RS07810	COG0508	dehydrogenase complex catalyzes the overall conversion of
FFX42_RS07815	COG0022	dehydrogenase e1 component
FFX42_RS07820	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FFX42_RS07825	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FFX42_RS07830	COG0497	DNA recombination
FFX42_RS07860	COG1302	Protein conserved in bacteria
FFX42_RS07865	COG0439	Biotin carboxylase
FFX42_RS07870	COG0511	ligase activity, forming carbon-carbon bonds
FFX42_RS07880	COG0006	proline dipeptidase activity
FFX42_RS07895	COG0095	Lipoate-protein ligase
FFX42_RS07900	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FFX42_RS07945	COG4537	Required for transformation and DNA binding
FFX42_RS07950	COG1459	type II secretion system
FFX42_RS07955	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FFX42_RS07960	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FFX42_RS07965	COG0011	TIGRFAM Protein of
FFX42_RS07970	COG1940	carbohydrate kinase activity
FFX42_RS07975	COG4483	Protein conserved in bacteria
FFX42_RS07985	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FFX42_RS07995	COG0768	penicillin binding
FFX42_RS08010	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FFX42_RS08015	COG1121	(ABC) transporter
FFX42_RS08025	COG0513	Belongs to the DEAD box helicase family
FFX42_RS08035	COG2384	SAM-dependent methyltransferase
FFX42_RS08055	COG0517	IMP dehydrogenase activity
FFX42_RS08075	COG0295	cytidine deaminase activity
FFX42_RS08090	COG1702	phosphate starvation-inducible protein PhoH
FFX42_RS08105	COG1030	water channel activity
FFX42_RS08115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FFX42_RS08120	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FFX42_RS08150	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FFX42_RS08165	COG1466	dna polymerase III delta subunit
FFX42_RS08170	COG0658	competence protein
FFX42_RS08170	COG2333	competence protein COMEC
FFX42_RS08175	COG2131	deaminase
FFX42_RS08180	COG2183	response to ionizing radiation
FFX42_RS08185	COG2226	methyltransferase
FFX42_RS08190	COG0799	negative regulation of ribosome biogenesis
FFX42_RS08195	COG1713	HD superfamily hydrolase involved in NAD metabolism
FFX42_RS08205	COG1534	Rna-binding protein
FFX42_RS08215	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FFX42_RS08220	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
FFX42_RS08255	COG1914	H( )-stimulated, divalent metal cation uptake system
FFX42_RS08265	COG0439	Biotin carboxylase
FFX42_RS08270	COG0511	ligase activity, forming carbon-carbon bonds
FFX42_RS08275	COG1984	allophanate hydrolase subunit 2
FFX42_RS08280	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FFX42_RS08295	COG0826	peptidase U32
FFX42_RS08300	COG0826	peptidase U32
FFX42_RS08330	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FFX42_RS08345	COG1104	cysteine desulfurase activity
FFX42_RS08350	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FFX42_RS08360	COG3237	CsbD-like
FFX42_RS08365	COG1959	2 iron, 2 sulfur cluster binding
FFX42_RS08370	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FFX42_RS08375	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FFX42_RS08420	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FFX42_RS08420	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
FFX42_RS08425	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FFX42_RS08425	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FFX42_RS08430	COG1862	Preprotein translocase
FFX42_RS08470	COG2868	ribosomal protein
FFX42_RS08515	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FFX42_RS08560	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FFX42_RS08565	COG0285	dihydrofolate synthase activity
FFX42_RS08575	COG2818	Glycosylase
FFX42_RS08610	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FFX42_RS08645	COG4112	unkown
FFX42_RS08665	COG0833	amino acid
FFX42_RS08680	COG1484	DNA-dependent DNA replication
FFX42_RS08710	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FFX42_RS08710	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FFX42_RS08720	COG5002	protein histidine kinase activity
FFX42_RS08725	COG0745	RESPONSE REGULATOR receiver
FFX42_RS08735	COG0372	Belongs to the citrate synthase family
FFX42_RS08740	COG1113	amino acid transport
FFX42_RS08765	COG0281	malic enzyme
FFX42_RS08775	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FFX42_RS08780	COG4109	DRTGG domain
FFX42_RS08820	COG0827	DNA restriction-modification system
FFX42_RS08840	COG1104	cysteine desulfurase activity
FFX42_RS08855	COG1956	GAF domain-containing protein
FFX42_RS08870	COG0584	glycerophosphoryl diester phosphodiesterase
FFX42_RS08875	COG1764	response to oxidative stress
FFX42_RS08880	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FFX42_RS08885	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FFX42_RS08900	COG1263	PTS System
FFX42_RS08900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS08905	COG0204	Acyl-transferase
FFX42_RS08910	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FFX42_RS08945	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FFX42_RS08950	COG0454	-acetyltransferase
FFX42_RS08970	COG1605	Chorismate mutase
FFX42_RS08970	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
FFX42_RS08995	COG1674	ftsk spoiiie
FFX42_RS09000	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FFX42_RS09010	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FFX42_RS09015	COG1363	Peptidase, m42
FFX42_RS09025	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FFX42_RS09035	COG0510	thiamine kinase activity
FFX42_RS09055	COG1187	pseudouridine synthase activity
FFX42_RS09060	COG2244	polysaccharide biosynthetic process
FFX42_RS09065	COG2081	HI0933 family
FFX42_RS09085	COG2814	Major facilitator Superfamily
FFX42_RS09090	COG1242	4 iron, 4 sulfur cluster binding
FFX42_RS09095	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FFX42_RS09105	COG2267	carboxylic ester hydrolase activity
FFX42_RS09140	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FFX42_RS09140	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FFX42_RS09160	COG5632	N-Acetylmuramoyl-L-alanine amidase
FFX42_RS09160	COG3266	domain, Protein
FFX42_RS09160	COG4193	domain, Protein
FFX42_RS09190	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FFX42_RS09215	COG0656	L-ascorbic acid biosynthetic process
FFX42_RS09235	COG1506	peptidase
FFX42_RS09240	COG2816	NAD+ diphosphatase activity
FFX42_RS09500	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
FFX42_RS09530	COG1131	(ABC) transporter
FFX42_RS09535	COG0537	adenosine 5'-monophosphoramidase activity
FFX42_RS09565	COG0420	3'-5' exonuclease activity
FFX42_RS09595	COG2197	response regulator
FFX42_RS09600	COG2203	Gaf domain
FFX42_RS09600	COG4585	Histidine kinase
FFX42_RS09605	COG0564	pseudouridine synthase activity
FFX42_RS09635	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FFX42_RS09640	COG1126	abc transporter atp-binding protein
FFX42_RS09645	COG0765	amino acid transport
FFX42_RS09815	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FFX42_RS09820	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FFX42_RS09830	COG4129	membrane
FFX42_RS09855	COG1988	membrane-bound metal-dependent
FFX42_RS09870	COG1388	LysM domain
FFX42_RS09870	COG1134	teichoic acid transport
FFX42_RS09900	COG0535	radical SAM domain protein
FFX42_RS09905	COG1607	acyl-coa hydrolase
FFX42_RS09910	COG2309	aminopeptidase activity
FFX42_RS09930	COG1295	ribonuclease BN
FFX42_RS10045	COG4851	CamS sex pheromone cAM373 precursor
FFX42_RS10065	COG4496	protein, YerC YecD
FFX42_RS10105	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FFX42_RS10115	COG0077	Prephenate dehydratase
FFX42_RS10125	COG0471	metal ion transport
FFX42_RS10135	COG1335	isochorismatase
FFX42_RS10150	COG1012	belongs to the aldehyde dehydrogenase family
FFX42_RS10205	COG1131	(ABC) transporter
FFX42_RS10220	COG1725	Transcriptional regulator
FFX42_RS10280	COG1388	LysM domain
FFX42_RS10280	COG0860	N-Acetylmuramoyl-L-alanine amidase
FFX42_RS10300	COG5632	N-Acetylmuramoyl-L-alanine amidase
FFX42_RS10300	COG1388	LysM domain
FFX42_RS10345	COG0739	heme binding
FFX42_RS10395	COG0740	serine-type endopeptidase activity
FFX42_RS10615	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FFX42_RS10685	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FFX42_RS10690	COG1621	beta-fructofuranosidase activity
FFX42_RS10695	COG1609	Transcriptional regulator
FFX42_RS10700	COG0004	ammonium transporteR
FFX42_RS10705	COG0425	Belongs to the sulfur carrier protein TusA family
FFX42_RS10710	COG2391	methyltransferase activity
FFX42_RS10720	COG0488	(ABC) transporter
FFX42_RS10730	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FFX42_RS10740	COG0456	acetyltransferase
FFX42_RS10745	COG1214	PFAM Peptidase M22, glycoprotease
FFX42_RS10750	COG0802	atpase or kinase
FFX42_RS10765	COG0028	Belongs to the TPP enzyme family
FFX42_RS10835	COG2183	response to ionizing radiation
FFX42_RS10840	COG1191	sigma factor activity
FFX42_RS10850	COG1366	Belongs to the anti-sigma-factor antagonist family
FFX42_RS10855	COG2208	phosphoserine phosphatase activity
FFX42_RS10885	COG3428	Bacterial PH domain
FFX42_RS10915	COG2205	protein histidine kinase activity
FFX42_RS10920	COG0745	RESPONSE REGULATOR receiver
FFX42_RS10935	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FFX42_RS10945	COG0772	Belongs to the SEDS family
FFX42_RS10960	COG1937	Protein conserved in bacteria
FFX42_RS10970	COG1418	mRNA catabolic process
FFX42_RS11025	COG0629	single-stranded DNA binding
FFX42_RS11100	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FFX42_RS11125	COG0009	L-threonylcarbamoyladenylate synthase
FFX42_RS11130	COG2890	protein-(glutamine-N5) methyltransferase activity
FFX42_RS11155	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FFX42_RS11195	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FFX42_RS11240	COG0813	purine-nucleoside phosphorylase activity
FFX42_RS11245	COG0783	Belongs to the Dps family
FFX42_RS11265	COG1482	cell wall glycoprotein biosynthetic process
FFX42_RS11270	COG0702	epimerase
FFX42_RS11275	COG0640	Transcriptional regulator
FFX42_RS11310	COG0561	phosphatase activity
FFX42_RS11315	COG1119	ATPase activity
FFX42_RS11330	COG3711	transcriptional antiterminator
FFX42_RS11360	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
FFX42_RS11420	COG0489	protein tyrosine kinase activity
FFX42_RS11425	COG2814	Major facilitator Superfamily
FFX42_RS11440	COG1272	protein, Hemolysin III
FFX42_RS11450	COG1988	membrane-bound metal-dependent
FFX42_RS11460	COG3314	Sporulation integral membrane protein YlbJ
FFX42_RS11465	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS11470	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FFX42_RS11475	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FFX42_RS11485	COG3457	Alanine racemase
FFX42_RS11490	COG4264	IucA IucC family
FFX42_RS11495	COG2814	Major facilitator Superfamily
FFX42_RS11520	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FFX42_RS11530	COG2130	NADP-dependent
FFX42_RS11595	COG0656	L-ascorbic acid biosynthetic process
FFX42_RS11600	COG0789	Transcriptional regulator
FFX42_RS11610	COG5492	domain, Protein
FFX42_RS11630	COG3527	Alpha-acetolactate decarboxylase
FFX42_RS11635	COG0028	Belongs to the TPP enzyme family
FFX42_RS11750	COG0201	protein transport
FFX42_RS11865	COG2252	PERMEase
FFX42_RS11910	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FFX42_RS11970	COG1763	Mo-molybdopterin cofactor biosynthetic process
FFX42_RS11990	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FFX42_RS11995	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
FFX42_RS12000	COG4149	molybdate abc transporter
FFX42_RS12005	COG0725	ABC transporter, periplasmic molybdate-binding protein
FFX42_RS12020	COG1268	BioY protein
FFX42_RS12035	COG1960	acyl-CoA dehydrogenase activity
FFX42_RS12040	COG4413	Urea transporter
FFX42_RS12100	COG3942	CHAP domain
FFX42_RS12125	COG3942	CHAP domain
FFX42_RS12195	COG1113	amino acid transport
FFX42_RS12215	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FFX42_RS12220	COG0385	Bile acid
FFX42_RS12230	COG1263	PTS System
FFX42_RS12230	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS12235	COG1737	Transcriptional regulator
FFX42_RS12255	COG1028	Short-chain dehydrogenase reductase Sdr
FFX42_RS12260	COG1473	amidohydrolase
FFX42_RS12275	COG0583	DNA-binding transcription factor activity
FFX42_RS12300	COG2258	MOSC domain
FFX42_RS12320	COG1668	transmembrane transport
FFX42_RS12325	COG4152	abc transporter atp-binding protein
FFX42_RS12330	COG3152	Membrane
FFX42_RS12345	COG0786	glutamate:sodium symporter activity
FFX42_RS12355	COG0598	Magnesium transport protein CorA
FFX42_RS12370	COG0657	acetylesterase activity
FFX42_RS12380	COG2814	Major facilitator Superfamily
FFX42_RS12385	COG1566	PFAM secretion protein HlyD family protein
FFX42_RS12395	COG2814	Major facilitator Superfamily
FFX42_RS12455	COG1620	l-lactate permease
FFX42_RS12475	COG0604	alcohol dehydrogenase
FFX42_RS12500	COG1511	domain protein
FFX42_RS12515	COG1263	PTS System
FFX42_RS12515	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FFX42_RS12530	COG3871	stress protein (general stress protein 26)
FFX42_RS12570	COG0789	Transcriptional regulator
FFX42_RS12590	COG2181	nitrate reductase activity
FFX42_RS12600	COG1140	nitrate reductase beta subunit
FFX42_RS12605	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FFX42_RS12615	COG2146	nitrite reductase [NAD(P)H] activity
FFX42_RS12620	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FFX42_RS12630	COG0454	-acetyltransferase
FFX42_RS12635	COG2116	formate transmembrane transporter activity
FFX42_RS12650	COG3443	Belongs to the bacterial solute-binding protein 9 family
FFX42_RS12650	COG0803	Belongs to the bacterial solute-binding protein 9 family
FFX42_RS12690	COG1126	abc transporter atp-binding protein
FFX42_RS12695	COG0765	amino acid transport
FFX42_RS12700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FFX42_RS12705	COG2814	Major facilitator Superfamily
FFX42_RS12720	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FFX42_RS12765	COG0156	8-amino-7-oxononanoate synthase activity
FFX42_RS12775	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FFX42_RS12780	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FFX42_RS12790	COG1132	(ABC) transporter
FFX42_RS12795	COG1132	(ABC) transporter
FFX42_RS12795	COG2375	cellular response to nickel ion
FFX42_RS12810	COG1929	Belongs to the glycerate kinase type-1 family
FFX42_RS12820	COG2814	Major facilitator Superfamily
FFX42_RS12840	COG1113	amino acid transport
FFX42_RS12850	COG0531	amino acid
FFX42_RS12865	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FFX42_RS12875	COG1174	glycine betaine transport
FFX42_RS12885	COG1174	glycine betaine transport
FFX42_RS12905	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
FFX42_RS12910	COG0531	amino acid
FFX42_RS12915	COG2272	Belongs to the type-B carboxylesterase lipase family
FFX42_RS12920	COG2814	Major facilitator Superfamily
FFX42_RS12925	COG0390	transport system, permease component
FFX42_RS12930	COG4619	ABC transporter
FFX42_RS12935	COG1363	Peptidase, m42
FFX42_RS12955	COG4808	Protein conserved in bacteria
FFX42_RS12960	COG0069	glutamate synthase activity
FFX42_RS13015	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
FFX42_RS13020	COG1028	Short-chain dehydrogenase reductase Sdr
FFX42_RS13025	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
FFX42_RS13030	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FFX42_RS13125	COG0494	nUDIX hydrolase
FFX42_RS13170	COG1846	Transcriptional regulator
FFX42_RS13205	COG1070	Carbohydrate kinase
FFX42_RS13210	COG1802	Transcriptional regulator
FFX42_RS13215	COG0789	Transcriptional regulator
FFX42_RS13220	COG2357	RelA SpoT domain protein
FFX42_RS13225	COG4876	unkown
FFX42_RS13235	COG2271	Major facilitator Superfamily
FFX42_RS13240	COG0586	Pfam SNARE associated Golgi protein
FFX42_RS13260	COG1131	(ABC) transporter
FFX42_RS13280	COG0400	carboxylic ester hydrolase activity
FFX42_RS13285	COG0346	lactoylglutathione lyase activity
FFX42_RS13290	COG1846	Transcriptional regulator
FFX42_RS13300	COG2514	catechol 2,3-dioxygenase activity
FFX42_RS13315	COG0561	phosphatase activity
FFX42_RS13320	COG1131	(ABC) transporter
FFX42_RS13330	COG3764	Sortase (surface protein transpeptidase)
FFX42_RS13350	COG1760	l-serine dehydratase
FFX42_RS13355	COG1760	l-serine dehydratase
FFX42_RS13370	COG0697	spore germination
FFX42_RS13375	COG0657	acetylesterase activity
FFX42_RS13395	COG0028	Belongs to the TPP enzyme family
FFX42_RS13410	COG0583	DNA-binding transcription factor activity
FFX42_RS13420	COG3942	CHAP domain
FFX42_RS13430	COG3425	synthase
FFX42_RS13435	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FFX42_RS13460	COG2409	Drug exporters of the RND superfamily
FFX42_RS13505	COG0436	Aminotransferase
FFX42_RS13535	COG3942	CHAP domain
FFX42_RS13540	COG2755	lipolytic protein G-D-S-L family
FFX42_RS13540	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FFX42_RS13650	COG3001	Fructosamine kinase
FFX42_RS13655	COG0167	dihydroorotate dehydrogenase activity
FFX42_RS13710	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FFX42_RS13715	COG3527	Alpha-acetolactate decarboxylase
FFX42_RS13725	COG0531	amino acid
FFX42_RS13755	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FFX42_RS13775	COG1012	belongs to the aldehyde dehydrogenase family
FFX42_RS13785	COG1510	regulation of RNA biosynthetic process
FFX42_RS13790	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FFX42_RS13815	COG2851	Citrate transporter
FFX42_RS13830	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FFX42_RS13840	COG0386	Belongs to the glutathione peroxidase family
FFX42_RS13865	COG1136	(ABC) transporter
FFX42_RS13870	COG2205	protein histidine kinase activity
FFX42_RS13875	COG0745	RESPONSE REGULATOR receiver
FFX42_RS13885	COG1785	Belongs to the alkaline phosphatase family
FFX42_RS13895	COG1846	Transcriptional regulator
FFX42_RS13940	COG1438	arginine binding
FFX42_RS13960	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FFX42_RS13960	COG3711	transcriptional antiterminator
FFX42_RS13965	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FFX42_RS13965	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FFX42_RS13965	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FFX42_RS13970	COG1482	cell wall glycoprotein biosynthetic process
FFX42_RS13980	COG3942	CHAP domain
FFX42_RS13980	COG1705	Flagellar rod assembly protein muramidase FlgJ
FFX42_RS13985	COG3433	isochorismatase activity
FFX42_RS13985	COG1535	isochorismatase
FFX42_RS14000	COG0438	transferase activity, transferring glycosyl groups
FFX42_RS14015	COG1073	alpha beta
FFX42_RS14035	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FFX42_RS14055	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FFX42_RS14145	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FFX42_RS14230	COG0471	metal ion transport
FFX42_RS14235	COG2962	Rard protein
FFX42_RS14245	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
FFX42_RS14260	COG1136	(ABC) transporter
FFX42_RS14265	COG0577	efflux transmembrane transporter activity
FFX42_RS14275	COG1278	Cold shock
FFX42_RS14295	COG1475	DNA binding
FFX42_RS14400	COG3682	Transcriptional regulator
FFX42_RS14420	COG0604	alcohol dehydrogenase