locus-tag	class	description
RK79_RS00045	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
RK79_RS00110	COG1763	Mo-molybdopterin cofactor biosynthetic process
RK79_RS00130	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
RK79_RS00135	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
RK79_RS00140	COG4149	molybdate abc transporter
RK79_RS00145	COG0725	ABC transporter, periplasmic molybdate-binding protein
RK79_RS00160	COG1268	BioY protein
RK79_RS00175	COG1960	acyl-CoA dehydrogenase activity
RK79_RS00180	COG4413	Urea transporter
RK79_RS00245	COG3942	CHAP domain
RK79_RS00255	COG1757	Na H antiporter
RK79_RS00270	COG3942	CHAP domain
RK79_RS00340	COG1113	amino acid transport
RK79_RS00360	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RK79_RS00365	COG0385	Bile acid
RK79_RS00375	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RK79_RS00375	COG1263	PTS System
RK79_RS00380	COG1737	Transcriptional regulator
RK79_RS00400	COG1028	Short-chain dehydrogenase reductase Sdr
RK79_RS00405	COG1473	amidohydrolase
RK79_RS00420	COG0583	DNA-binding transcription factor activity
RK79_RS00445	COG2258	MOSC domain
RK79_RS00465	COG1668	transmembrane transport
RK79_RS00470	COG4152	abc transporter atp-binding protein
RK79_RS00475	COG3152	Membrane
RK79_RS00490	COG0786	glutamate:sodium symporter activity
RK79_RS00500	COG0598	Magnesium transport protein CorA
RK79_RS00515	COG0657	acetylesterase activity
RK79_RS00525	COG2814	Major facilitator Superfamily
RK79_RS00530	COG1566	PFAM secretion protein HlyD family protein
RK79_RS00605	COG1620	l-lactate permease
RK79_RS00625	COG0604	alcohol dehydrogenase
RK79_RS00655	COG1511	domain protein
RK79_RS00670	COG1263	PTS System
RK79_RS00670	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RK79_RS00685	COG3871	stress protein (general stress protein 26)
RK79_RS00725	COG0789	Transcriptional regulator
RK79_RS00745	COG2181	nitrate reductase activity
RK79_RS00755	COG1140	nitrate reductase beta subunit
RK79_RS00760	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
RK79_RS00770	COG2146	nitrite reductase [NAD(P)H] activity
RK79_RS00775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
RK79_RS00785	COG0454	-acetyltransferase
RK79_RS00795	COG2116	formate transmembrane transporter activity
RK79_RS00810	COG3443	Belongs to the bacterial solute-binding protein 9 family
RK79_RS00810	COG0803	Belongs to the bacterial solute-binding protein 9 family
RK79_RS00845	COG1126	abc transporter atp-binding protein
RK79_RS00850	COG0765	amino acid transport
RK79_RS00855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RK79_RS00860	COG2814	Major facilitator Superfamily
RK79_RS00880	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
RK79_RS00925	COG0156	8-amino-7-oxononanoate synthase activity
RK79_RS00935	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
RK79_RS00940	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
RK79_RS00955	COG1132	(ABC) transporter
RK79_RS00980	COG1929	Belongs to the glycerate kinase type-1 family
RK79_RS00990	COG2814	Major facilitator Superfamily
RK79_RS01010	COG1113	amino acid transport
RK79_RS01025	COG0531	amino acid
RK79_RS01050	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
RK79_RS01060	COG1174	glycine betaine transport
RK79_RS01070	COG1174	glycine betaine transport
RK79_RS01090	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
RK79_RS01095	COG0531	amino acid
RK79_RS01110	COG2272	Belongs to the type-B carboxylesterase lipase family
RK79_RS01115	COG2814	Major facilitator Superfamily
RK79_RS01120	COG0390	transport system, permease component
RK79_RS01125	COG4619	ABC transporter
RK79_RS01130	COG1363	Peptidase, m42
RK79_RS01150	COG4808	Protein conserved in bacteria
RK79_RS01155	COG0069	glutamate synthase activity
RK79_RS01170	COG1124	(ABC) transporter
RK79_RS01180	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RK79_RS01185	COG0601	transmembrane transport
RK79_RS01190	COG0747	negative chemotaxis
RK79_RS01210	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
RK79_RS01215	COG1028	Short-chain dehydrogenase reductase Sdr
RK79_RS01220	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
RK79_RS01225	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
RK79_RS01360	COG1070	Carbohydrate kinase
RK79_RS01365	COG1802	Transcriptional regulator
RK79_RS01370	COG0789	Transcriptional regulator
RK79_RS01375	COG2357	RelA SpoT domain protein
RK79_RS01380	COG4876	unkown
RK79_RS01395	COG2271	Major facilitator Superfamily
RK79_RS01400	COG0586	Pfam SNARE associated Golgi protein
RK79_RS01410	COG2814	Major facilitator Superfamily
RK79_RS01415	COG1846	Transcriptional regulator
RK79_RS01430	COG1131	(ABC) transporter
RK79_RS01450	COG0400	carboxylic ester hydrolase activity
RK79_RS01455	COG0346	lactoylglutathione lyase activity
RK79_RS01460	COG1846	Transcriptional regulator
RK79_RS01470	COG2514	catechol 2,3-dioxygenase activity
RK79_RS01485	COG0561	phosphatase activity
RK79_RS01490	COG1131	(ABC) transporter
RK79_RS01500	COG3764	Sortase (surface protein transpeptidase)
RK79_RS01520	COG1760	l-serine dehydratase
RK79_RS01525	COG1760	l-serine dehydratase
RK79_RS01540	COG0697	spore germination
RK79_RS01545	COG0657	acetylesterase activity
RK79_RS01565	COG0028	Belongs to the TPP enzyme family
RK79_RS01580	COG0583	DNA-binding transcription factor activity
RK79_RS01590	COG3942	CHAP domain
RK79_RS01600	COG3425	synthase
RK79_RS01610	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
RK79_RS01635	COG2409	Drug exporters of the RND superfamily
RK79_RS01680	COG0436	Aminotransferase
RK79_RS01720	COG0456	acetyltransferase
RK79_RS01830	COG3001	Fructosamine kinase
RK79_RS01835	COG0167	dihydroorotate dehydrogenase activity
RK79_RS01890	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
RK79_RS01895	COG3527	Alpha-acetolactate decarboxylase
RK79_RS01910	COG0531	amino acid
RK79_RS01940	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
RK79_RS01965	COG1012	belongs to the aldehyde dehydrogenase family
RK79_RS01975	COG1510	regulation of RNA biosynthetic process
RK79_RS01980	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
RK79_RS02005	COG2851	Citrate transporter
RK79_RS02015	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
RK79_RS02025	COG0386	Belongs to the glutathione peroxidase family
RK79_RS02050	COG1136	(ABC) transporter
RK79_RS02055	COG2205	protein histidine kinase activity
RK79_RS02060	COG0745	RESPONSE REGULATOR receiver
RK79_RS02070	COG1785	Belongs to the alkaline phosphatase family
RK79_RS02080	COG1846	Transcriptional regulator
RK79_RS02125	COG1438	arginine binding
RK79_RS02145	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RK79_RS02145	COG3711	transcriptional antiterminator
RK79_RS02150	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RK79_RS02150	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RK79_RS02150	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RK79_RS02155	COG1482	cell wall glycoprotein biosynthetic process
RK79_RS02165	COG3942	CHAP domain
RK79_RS02165	COG1705	Flagellar rod assembly protein muramidase FlgJ
RK79_RS02175	COG3433	isochorismatase activity
RK79_RS02175	COG1535	isochorismatase
RK79_RS02190	COG0438	transferase activity, transferring glycosyl groups
RK79_RS02205	COG1073	alpha beta
RK79_RS02225	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
RK79_RS02245	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
RK79_RS02335	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
RK79_RS02390	COG0471	metal ion transport
RK79_RS02395	COG2962	Rard protein
RK79_RS02405	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
RK79_RS02420	COG1136	(ABC) transporter
RK79_RS02425	COG0577	efflux transmembrane transporter activity
RK79_RS02435	COG1278	Cold shock
RK79_RS02470	COG1475	DNA binding
RK79_RS02510	COG2501	S4 domain
RK79_RS02530	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
RK79_RS02560	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
RK79_RS02570	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
RK79_RS02580	COG0305	Participates in initiation and elongation during chromosome replication
RK79_RS02615	COG4863	YycH protein
RK79_RS02625	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
RK79_RS02630	COG0737	Belongs to the 5'-nucleotidase family
RK79_RS02680	COG0730	response to heat
RK79_RS02685	COG1937	Protein conserved in bacteria
RK79_RS02690	COG2210	Belongs to the sulfur carrier protein TusA family
RK79_RS02695	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
RK79_RS02735	COG0655	NAD(P)H dehydrogenase (quinone) activity
RK79_RS02750	COG0823	Involved in the tonB-independent uptake of proteins
RK79_RS02765	COG1473	amidohydrolase
RK79_RS02775	COG1283	sodium-dependent phosphate transmembrane transporter activity
RK79_RS02780	COG4716	Myosin-crossreactive antigen
RK79_RS02785	COG0697	spore germination
RK79_RS02800	COG1620	l-lactate permease
RK79_RS02820	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS02825	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS02830	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
RK79_RS02840	COG2423	ornithine cyclodeaminase activity
RK79_RS02845	COG4264	IucA IucC family
RK79_RS02850	COG2814	Major facilitator Superfamily
RK79_RS02855	COG4264	IucA IucC family
RK79_RS02860	COG4264	IucA IucC family
RK79_RS02870	COG0019	diaminopimelate decarboxylase activity
RK79_RS02875	COG1475	DNA binding
RK79_RS02905	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
RK79_RS02910	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
RK79_RS02915	COG0438	transferase activity, transferring glycosyl groups
RK79_RS02945	COG0813	purine-nucleoside phosphorylase activity
RK79_RS02950	COG2814	Major facilitator Superfamily
RK79_RS02980	COG3639	organic phosphonate transmembrane transporter activity
RK79_RS03000	COG0737	Belongs to the 5'-nucleotidase family
RK79_RS03015	COG1454	alcohol dehydrogenase
RK79_RS03015	COG1012	belongs to the aldehyde dehydrogenase family
RK79_RS03040	COG1086	Polysaccharide biosynthesis protein
RK79_RS03050	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
RK79_RS03080	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
RK79_RS03090	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
RK79_RS03095	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
RK79_RS03105	COG2832	Protein of unknown function (DUF454)
RK79_RS03140	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
RK79_RS03145	COG1960	acyl-CoA dehydrogenase activity
RK79_RS03195	COG1114	Component of the transport system for branched-chain amino acids
RK79_RS03200	COG1335	isochorismatase
RK79_RS03205	COG3961	Belongs to the TPP enzyme family
RK79_RS03235	COG1737	Transcriptional regulator
RK79_RS03280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RK79_RS03290	COG0405	Gamma-glutamyltransferase
RK79_RS03305	COG3842	ATPase activity
RK79_RS03315	COG1175	transmembrane transport
RK79_RS03320	COG3833	ABC-type maltose transport systems, permease component
RK79_RS03325	COG0673	inositol 2-dehydrogenase activity
RK79_RS03330	COG0673	inositol 2-dehydrogenase activity
RK79_RS03340	COG1755	Isoprenylcysteine carboxyl methyltransferase
RK79_RS03400	COG0183	Belongs to the thiolase family
RK79_RS03410	COG1960	acyl-CoA dehydrogenase activity
RK79_RS03415	COG0318	PFAM AMP-dependent synthetase and ligase
RK79_RS03430	COG0747	negative chemotaxis
RK79_RS03435	COG3189	MarR family transcriptional regulator
RK79_RS03470	COG2190	(PTS) system
RK79_RS03470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RK79_RS03470	COG1263	PTS System
RK79_RS03475	COG1957	nucleoside hydrolase
RK79_RS03495	COG3414	Phosphotransferase system galactitol-specific IIB component
RK79_RS03500	COG3775	system Galactitol-specific IIC component
RK79_RS03505	COG1063	alcohol dehydrogenase
RK79_RS03515	COG1063	alcohol dehydrogenase
RK79_RS03525	COG1063	alcohol dehydrogenase
RK79_RS03530	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
RK79_RS03540	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
RK79_RS03550	COG1063	alcohol dehydrogenase
RK79_RS03555	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
RK79_RS03595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RK79_RS03610	COG2723	6-phospho-beta-galactosidase activity
RK79_RS03615	COG2226	methyltransferase
RK79_RS03670	COG1131	(ABC) transporter
RK79_RS03690	COG3942	CHAP domain
RK79_RS03690	COG1388	LysM domain
RK79_RS03800	COG1114	Component of the transport system for branched-chain amino acids
RK79_RS03810	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
RK79_RS03820	COG0577	efflux transmembrane transporter activity
RK79_RS03850	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RK79_RS03855	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
RK79_RS03905	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
RK79_RS03930	COG3037	sugar-specific permease SgaT UlaA
RK79_RS03940	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RK79_RS03945	COG3711	transcriptional antiterminator
RK79_RS03970	COG2271	Major facilitator Superfamily
RK79_RS03975	COG0346	lactoylglutathione lyase activity
RK79_RS03980	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
RK79_RS03985	COG0431	NADPH-dependent FMN reductase
RK79_RS04005	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RK79_RS04010	COG2822	iron ion transport
RK79_RS04020	COG0672	)-iron permease
RK79_RS04025	COG0805	protein transport
RK79_RS04030	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
RK79_RS04040	COG1476	TRANSCRIPTIONal
RK79_RS04050	COG1131	(ABC) transporter
RK79_RS04080	COG0646	methionine synthase
RK79_RS04080	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
RK79_RS04085	COG0626	cystathionine gamma-synthase activity
RK79_RS04090	COG0626	cystathionine gamma-synthase activity
RK79_RS04100	COG1475	DNA binding
RK79_RS04105	COG0668	transmembrane transport
RK79_RS04110	COG4481	Protein conserved in bacteria
RK79_RS04115	COG0012	GTP binding
RK79_RS04230	COG1823	symporter activity
RK79_RS04265	COG2233	PERMEase
RK79_RS04310	COG1683	Conserved Protein
RK79_RS04315	COG3759	membrane
RK79_RS04445	COG0523	cobalamin synthesis protein
RK79_RS04470	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
RK79_RS04480	COG5609	conserved protein (DUF2294)
RK79_RS04495	COG1647	Serine aminopeptidase, S33
RK79_RS04505	COG0733	neurotransmitter:sodium symporter activity
RK79_RS04510	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
RK79_RS04515	COG0626	cystathionine gamma-synthase activity
RK79_RS04525	COG2011	ABC-type metal ion transport system permease component
RK79_RS04530	COG1464	Belongs to the NlpA lipoprotein family
RK79_RS04565	COG0583	DNA-binding transcription factor activity
RK79_RS04570	COG0067	glutamate synthase
RK79_RS04570	COG0070	glutamate synthase
RK79_RS04570	COG0069	glutamate synthase activity
RK79_RS04575	COG0493	'glutamate synthase
RK79_RS04585	COG1263	PTS System
RK79_RS04585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RK79_RS04590	COG0366	Alpha amylase catalytic
RK79_RS04595	COG2188	Transcriptional regulator
RK79_RS04615	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
RK79_RS04650	COG1982	Orn Lys Arg decarboxylase major
RK79_RS04660	COG3870	Protein conserved in bacteria
RK79_RS04665	COG0470	DNA polymerase III
RK79_RS04670	COG1774	PSP1 C-terminal conserved region
RK79_RS04680	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
RK79_RS04690	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
RK79_RS04700	COG0084	hydrolase, TatD family'
RK79_RS04705	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
RK79_RS04715	COG4466	Protein conserved in bacteria
RK79_RS04725	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
RK79_RS04730	COG0251	oxidation-reduction process
RK79_RS04775	COG2244	polysaccharide biosynthetic process
RK79_RS04780	COG3956	TIGRFAM MazG family protein
RK79_RS04785	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
RK79_RS04795	COG1098	S1 RNA binding domain
RK79_RS04810	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
RK79_RS04840	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
RK79_RS04935	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RK79_RS04950	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RK79_RS04960	COG3880	PFAM UvrB UvrC protein
RK79_RS04975	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
RK79_RS04980	COG4956	integral membrane protein (PIN domain superfamily)
RK79_RS05005	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
RK79_RS05065	COG2813	Specifically methylates the guanine in position
RK79_RS05105	COG1473	amidohydrolase
RK79_RS05135	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
RK79_RS05140	COG1428	Deoxynucleoside kinase
RK79_RS05145	COG1428	Deoxynucleoside kinase
RK79_RS05155	COG0561	phosphatase activity
RK79_RS05200	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
RK79_RS05315	COG0095	Lipoate-protein ligase
RK79_RS05320	COG0083	homoserine kinase activity
RK79_RS05340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RK79_RS05380	COG0667	Aldo Keto reductase
RK79_RS05390	COG0655	NAD(P)H dehydrogenase (quinone) activity
RK79_RS05400	COG1078	dGTPase activity
RK79_RS05435	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
RK79_RS05440	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS05490	COG4974	Belongs to the 'phage' integrase family
RK79_RS05535	COG0803	Belongs to the bacterial solute-binding protein 9 family
RK79_RS05540	COG1108	ABC-type Mn2 Zn2 transport systems permease components
RK79_RS05545	COG1121	(ABC) transporter
RK79_RS05550	COG1321	iron dependent repressor
RK79_RS05560	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
RK79_RS05570	COG1682	transport, permease protein
RK79_RS05575	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
RK79_RS05585	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
RK79_RS05590	COG1686	Belongs to the peptidase S11 family
RK79_RS05595	COG1132	(ABC) transporter
RK79_RS05600	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RK79_RS05610	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
RK79_RS05615	COG1120	ATPase activity
RK79_RS05620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS05625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS05630	COG2376	Dihydroxyacetone kinase
RK79_RS05640	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
RK79_RS05660	COG3949	Membrane
RK79_RS05680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
RK79_RS05695	COG1136	(ABC) transporter
RK79_RS05700	COG0577	efflux transmembrane transporter activity
RK79_RS05705	COG1392	Phosphate transport regulator
RK79_RS05710	COG0306	phosphate transporter
RK79_RS05715	COG3942	CHAP domain
RK79_RS05715	COG1388	LysM domain
RK79_RS05725	COG4977	sequence-specific DNA binding
RK79_RS05725	COG1917	Cupin 2, conserved barrel domain protein
RK79_RS05755	COG0583	DNA-binding transcription factor activity
RK79_RS05770	COG2839	Protein conserved in bacteria
RK79_RS05800	COG1611	Belongs to the LOG family
RK79_RS05820	COG4988	ABC transporter
RK79_RS05825	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
RK79_RS05835	COG0523	cobalamin synthesis protein
RK79_RS05840	COG4989	oxidoreductase activity
RK79_RS05850	COG0471	metal ion transport
RK79_RS05885	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
RK79_RS05890	COG1349	DNA-binding transcription factor activity
RK79_RS05895	COG1105	Belongs to the carbohydrate kinase PfkB family
RK79_RS05900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RK79_RS05900	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RK79_RS05900	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RK79_RS05905	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
RK79_RS05910	COG1253	flavin adenine dinucleotide binding
RK79_RS05915	COG0656	L-ascorbic acid biosynthetic process
RK79_RS05920	COG0463	Glycosyl transferase, family 2
RK79_RS05955	COG0720	synthase
RK79_RS05965	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
RK79_RS05965	COG0512	Glutamine amidotransferase of anthranilate synthase
RK79_RS05970	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
RK79_RS06000	COG0488	(ABC) transporter
RK79_RS06005	COG0514	ATP-dependent DNA helicase (RecQ)
RK79_RS06010	COG0517	IMP dehydrogenase activity
RK79_RS06010	COG1125	glycine betaine transport
RK79_RS06015	COG1174	glycine betaine transport
RK79_RS06040	COG3104	oligopeptide transport
RK79_RS06070	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RK79_RS06075	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RK79_RS06085	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS06090	COG4605	iron ion homeostasis
RK79_RS06095	COG4604	ABC transporter, ATP-binding protein
RK79_RS06100	COG4607	ABC-type enterochelin transport system periplasmic component
RK79_RS06155	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
RK79_RS06160	COG1739	Uncharacterized protein family UPF0029
RK79_RS06170	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
RK79_RS06175	COG1040	competence protein
RK79_RS06205	COG1388	LysM domain
RK79_RS06205	COG3942	CHAP domain
RK79_RS06260	COG0391	Required for morphogenesis under gluconeogenic growth conditions
RK79_RS06280	COG0281	malic enzyme
RK79_RS06335	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
RK79_RS06340	COG1647	Serine aminopeptidase, S33
RK79_RS06345	COG0557	exoribonuclease II activity
RK79_RS06405	COG1278	Cold shock
RK79_RS06450	COG1279	arginine transmembrane transporter activity
RK79_RS06475	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
RK79_RS06480	COG1393	Belongs to the ArsC family
RK79_RS06495	COG3878	Protein conserved in bacteria
RK79_RS06505	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
RK79_RS06520	COG2011	ABC-type metal ion transport system permease component
RK79_RS06525	COG1464	Belongs to the NlpA lipoprotein family
RK79_RS06545	COG0396	ATPase activity
RK79_RS06550	COG0719	Fe-S assembly protein
RK79_RS06560	COG0822	iron-sulfur transferase activity
RK79_RS06590	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
RK79_RS06680	COG1484	DNA-dependent DNA replication
RK79_RS06895	COG1388	LysM domain
RK79_RS06895	COG0860	N-Acetylmuramoyl-L-alanine amidase
RK79_RS06915	COG1253	flavin adenine dinucleotide binding
RK79_RS06925	COG1801	Protein of unknown function DUF72
RK79_RS06930	COG0730	response to heat
RK79_RS06945	COG4470	Protein conserved in bacteria
RK79_RS06955	COG2445	Protein of unknown function DUF86
RK79_RS06985	COG1696	Membrane protein involved in D-alanine export
RK79_RS06995	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
RK79_RS07000	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
RK79_RS07005	COG4837	Protein of unknown function (DUF1462)
RK79_RS07010	COG1252	NADH dehydrogenase
RK79_RS07020	COG0316	Belongs to the HesB IscA family
RK79_RS07030	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
RK79_RS07035	COG2056	Na+-H+ antiporter family
RK79_RS07040	COG2050	protein possibly involved in aromatic compounds catabolism
RK79_RS07095	COG1098	S1 RNA binding domain
RK79_RS07100	COG1902	pentaerythritol trinitrate reductase activity
RK79_RS07120	COG0584	glycerophosphoryl diester phosphodiesterase
RK79_RS07145	COG0398	Pfam SNARE associated Golgi protein
RK79_RS07185	COG0561	phosphatase activity
RK79_RS07225	COG1881	PFAM PEBP family protein
RK79_RS07255	COG0601	transmembrane transport
RK79_RS07260	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RK79_RS07265	COG0444	Belongs to the ABC transporter superfamily
RK79_RS07270	COG4608	Belongs to the ABC transporter superfamily
RK79_RS07275	COG4166	transmembrane transport
RK79_RS07280	COG0747	negative chemotaxis
RK79_RS07285	COG0444	Belongs to the ABC transporter superfamily
RK79_RS07290	COG4608	Belongs to the ABC transporter superfamily
RK79_RS07295	COG0601	transmembrane transport
RK79_RS07300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RK79_RS07325	COG1164	Oligoendopeptidase f
RK79_RS07335	COG2346	COG2346, Truncated hemoglobins
RK79_RS07350	COG2357	RelA SpoT domain protein
RK79_RS07360	COG0564	pseudouridine synthase activity
RK79_RS07365	COG2239	Acts as a magnesium transporter
RK79_RS07370	COG0475	glutathione-regulated potassium exporter activity
RK79_RS07370	COG0569	domain protein
RK79_RS07380	COG0628	permease
RK79_RS07385	COG1115	amino acid carrier protein
RK79_RS07425	COG0861	Integral membrane protein TerC family
RK79_RS07435	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RK79_RS07440	COG0737	Belongs to the 5'-nucleotidase family
RK79_RS07455	COG4903	ComK protein
RK79_RS07470	COG4873	Protein conserved in bacteria
RK79_RS07530	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
RK79_RS07540	COG2314	TM2 domain
RK79_RS07550	COG1575	Belongs to the MenA family. Type 1 subfamily
RK79_RS07560	COG1169	isochorismate synthase
RK79_RS07570	COG2267	carboxylic ester hydrolase activity
RK79_RS07595	COG0436	Aminotransferase
RK79_RS07600	COG3594	Acyltransferase
RK79_RS07630	COG1316	TRANSCRIPTIONal
RK79_RS07680	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
RK79_RS07695	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
RK79_RS07740	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
RK79_RS07745	COG4172	Belongs to the ABC transporter superfamily
RK79_RS07750	COG4721	ABC-type cobalt transport system, permease component
RK79_RS07770	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
RK79_RS07790	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
RK79_RS07795	COG1271	oxidase subunit
RK79_RS07800	COG1294	oxidase, subunit
RK79_RS07805	COG0569	domain protein
RK79_RS07870	COG1176	ABC-type spermidine putrescine transport system, permease component I
RK79_RS07875	COG1177	transmembrane transport
RK79_RS07880	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
RK79_RS07905	COG0483	inositol monophosphate 1-phosphatase activity
RK79_RS07925	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
RK79_RS07935	COG0772	Belongs to the SEDS family
RK79_RS07985	COG3679	Belongs to the UPF0342 family
RK79_RS08005	COG0742	ribosomal rna small subunit methyltransferase
RK79_RS08065	COG4509	Sortase family
RK79_RS08080	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
RK79_RS08120	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
RK79_RS08120	COG1796	DNA polymerase
RK79_RS08145	COG2009	succinate dehydrogenase
RK79_RS08150	COG1053	succinate dehydrogenase
RK79_RS08155	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
RK79_RS08265	COG1288	antiporter activity
RK79_RS08300	COG1011	Hydrolase
RK79_RS08325	COG4839	cell division protein FtsL
RK79_RS08345	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
RK79_RS08350	COG0849	cell division
RK79_RS08365	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
RK79_RS08375	COG0762	integral membrane protein
RK79_RS08380	COG2302	S4 RNA-binding domain
RK79_RS08385	COG3599	regulation of cell shape
RK79_RS08395	COG2514	catechol 2,3-dioxygenase activity
RK79_RS08420	COG0564	pseudouridine synthase activity
RK79_RS08430	COG2233	PERMEase
RK79_RS08485	COG1293	RNA-binding protein homologous to eukaryotic snRNP
RK79_RS08500	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
RK79_RS08505	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
RK79_RS08515	COG2314	TM2 domain
RK79_RS08530	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RK79_RS08530	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RK79_RS08540	COG0631	protein serine/threonine phosphatase activity
RK79_RS08555	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
RK79_RS08570	COG1302	Protein conserved in bacteria
RK79_RS08620	COG1196	nuclear chromosome segregation
RK79_RS08625	COG0552	protein localization to endoplasmic reticulum
RK79_RS08635	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
RK79_RS08695	COG2348	transferase activity, transferring amino-acyl groups
RK79_RS08700	COG0758	DNA mediated transformation
RK79_RS08800	COG0195	Participates in both transcription termination and antitermination
RK79_RS08805	COG2740	Nucleic-acid-binding protein implicated in transcription termination
RK79_RS08830	COG0196	riboflavin kinase activity
RK79_RS08860	COG2188	Transcriptional regulator
RK79_RS08865	COG0612	Peptidase, M16
RK79_RS08870	COG0612	Peptidase, M16
RK79_RS08875	COG0300	oxidoreductase activity
RK79_RS08895	COG1546	Belongs to the CinA family
RK79_RS08895	COG1058	Belongs to the CinA family
RK79_RS08915	COG1692	metallophosphoesterase
RK79_RS08920	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
RK79_RS08920	COG0674	pyruvate-flavodoxin oxidoreductase activity
RK79_RS08925	COG1013	pyruvate-flavodoxin oxidoreductase activity
RK79_RS08960	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
RK79_RS08965	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RK79_RS08990	COG1923	regulation of RNA biosynthetic process
RK79_RS09015	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
RK79_RS09020	COG0789	Transcriptional regulator
RK79_RS09030	COG0582	viral genome integration into host DNA
RK79_RS09155	COG1595	DNA-templated transcription, initiation
RK79_RS09310	COG1131	(ABC) transporter
RK79_RS09325	COG2197	response regulator
RK79_RS09335	COG1525	nuclease
RK79_RS09350	COG0527	aspartate kinase activity
RK79_RS09355	COG0460	homoserine dehydrogenase
RK79_RS09360	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
RK79_RS09385	COG0833	amino acid
RK79_RS09415	COG2340	Cysteine-rich secretory protein family
RK79_RS09450	COG4846	Membrane protein involved in cytochrome C biogenesis
RK79_RS09470	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
RK79_RS09480	COG0824	Thioesterase
RK79_RS09510	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
RK79_RS09520	COG1115	amino acid carrier protein
RK79_RS09535	COG0628	permease
RK79_RS09560	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
RK79_RS09570	COG1363	Peptidase, m42
RK79_RS09575	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
RK79_RS09580	COG0512	Glutamine amidotransferase of anthranilate synthase
RK79_RS09620	COG0561	phosphatase activity
RK79_RS09665	COG0704	Plays a role in the regulation of phosphate uptake
RK79_RS09675	COG0581	inorganic phosphate transmembrane transporter activity
RK79_RS09680	COG0573	inorganic phosphate transmembrane transporter activity
RK79_RS09695	COG0488	(ABC) transporter
RK79_RS09705	COG0527	aspartate kinase activity
RK79_RS09710	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
RK79_RS09745	COG2808	Putative FMN-binding domain
RK79_RS09790	COG4548	von Willebrand factor, type A
RK79_RS09795	COG0714	Associated with various cellular activities
RK79_RS09840	COG0671	phosphoesterase, PA-phosphatase related
RK79_RS09915	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
RK79_RS09935	COG0531	amino acid
RK79_RS09950	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RK79_RS09955	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
RK79_RS09975	COG0116	Belongs to the methyltransferase superfamily
RK79_RS10015	COG4499	WXG100 protein secretion system (Wss), protein YukC
RK79_RS10015	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RK79_RS10025	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
RK79_RS10030	COG3935	DnaD domain protein
RK79_RS10055	COG0438	transferase activity, transferring glycosyl groups
RK79_RS10060	COG1694	Mazg nucleotide pyrophosphohydrolase
RK79_RS10065	COG2738	Putative neutral zinc metallopeptidase
RK79_RS10070	COG4347	Protein of unknown function (DUF1405)
RK79_RS10115	COG0142	geranyltranstransferase activity
RK79_RS10180	COG0492	ferredoxin-NADP+ reductase activity
RK79_RS10195	COG0514	ATP-dependent DNA helicase (RecQ)
RK79_RS10205	COG1141	Ferredoxin
RK79_RS10255	COG0860	N-Acetylmuramoyl-L-alanine amidase
RK79_RS10255	COG1388	LysM domain
RK79_RS10305	COG3953	SLT domain
RK79_RS10305	COG5280	Phage tail tape measure protein TP901
RK79_RS10535	COG2176	DNA-directed DNA polymerase activity
RK79_RS10555	COG0582	viral genome integration into host DNA
RK79_RS10575	COG5002	protein histidine kinase activity
RK79_RS10580	COG0745	RESPONSE REGULATOR receiver
RK79_RS10585	COG1187	pseudouridine synthase activity
RK79_RS10610	COG0735	belongs to the Fur family
RK79_RS10615	COG0494	nUDIX hydrolase
RK79_RS10620	COG0667	Aldo Keto reductase
RK79_RS10630	COG4221	oxidoreductase activity
RK79_RS10645	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
RK79_RS10655	COG0366	Alpha amylase catalytic
RK79_RS10660	COG1609	Transcriptional regulator
RK79_RS10680	COG2195	Cleaves the N-terminal amino acid of tripeptides
RK79_RS10690	COG4129	membrane
RK79_RS10710	COG0508	dehydrogenase complex catalyzes the overall conversion of
RK79_RS10715	COG0022	dehydrogenase e1 component
RK79_RS10720	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
RK79_RS10725	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RK79_RS10730	COG0497	DNA recombination
RK79_RS10760	COG1302	Protein conserved in bacteria
RK79_RS10765	COG0439	Biotin carboxylase
RK79_RS10770	COG0511	ligase activity, forming carbon-carbon bonds
RK79_RS10780	COG0006	proline dipeptidase activity
RK79_RS10795	COG0095	Lipoate-protein ligase
RK79_RS10800	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
RK79_RS10845	COG4537	Required for transformation and DNA binding
RK79_RS10850	COG1459	type II secretion system
RK79_RS10855	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
RK79_RS10860	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
RK79_RS10865	COG0011	TIGRFAM Protein of
RK79_RS10870	COG1940	carbohydrate kinase activity
RK79_RS10875	COG4483	Protein conserved in bacteria
RK79_RS10885	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
RK79_RS10910	COG1108	ABC-type Mn2 Zn2 transport systems permease components
RK79_RS10915	COG1121	(ABC) transporter
RK79_RS10925	COG0513	Belongs to the DEAD box helicase family
RK79_RS10935	COG2384	SAM-dependent methyltransferase
RK79_RS10955	COG0517	IMP dehydrogenase activity
RK79_RS10975	COG0295	cytidine deaminase activity
RK79_RS10990	COG1702	phosphate starvation-inducible protein PhoH
RK79_RS11005	COG1030	water channel activity
RK79_RS11015	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
RK79_RS11020	COG1385	rRNA (uridine-N3-)-methyltransferase activity
RK79_RS11050	COG0635	Involved in the biosynthesis of porphyrin-containing compound
RK79_RS11070	COG1466	dna polymerase III delta subunit
RK79_RS11075	COG0658	competence protein
RK79_RS11075	COG2333	competence protein COMEC
RK79_RS11080	COG2131	deaminase
RK79_RS11085	COG2183	response to ionizing radiation
RK79_RS11090	COG2226	methyltransferase
RK79_RS11095	COG0799	negative regulation of ribosome biogenesis
RK79_RS11100	COG1713	HD superfamily hydrolase involved in NAD metabolism
RK79_RS11110	COG1534	Rna-binding protein
RK79_RS11120	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
RK79_RS11125	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
RK79_RS11150	COG1914	H( )-stimulated, divalent metal cation uptake system
RK79_RS11160	COG0439	Biotin carboxylase
RK79_RS11165	COG0511	ligase activity, forming carbon-carbon bonds
RK79_RS11170	COG1984	allophanate hydrolase subunit 2
RK79_RS11175	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
RK79_RS11225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
RK79_RS11245	COG1104	cysteine desulfurase activity
RK79_RS11250	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
RK79_RS11260	COG3237	CsbD-like
RK79_RS11265	COG1959	2 iron, 2 sulfur cluster binding
RK79_RS11270	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
RK79_RS11275	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
RK79_RS11320	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
RK79_RS11320	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
RK79_RS11325	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RK79_RS11325	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RK79_RS11330	COG1862	Preprotein translocase
RK79_RS11370	COG2868	ribosomal protein
RK79_RS11415	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
RK79_RS11425	COG0285	dihydrofolate synthase activity
RK79_RS11435	COG2818	Glycosylase
RK79_RS11475	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
RK79_RS11510	COG4112	unkown
RK79_RS11535	COG0833	amino acid
RK79_RS11550	COG1484	DNA-dependent DNA replication
RK79_RS11580	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RK79_RS11580	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RK79_RS11590	COG5002	protein histidine kinase activity
RK79_RS11595	COG0745	RESPONSE REGULATOR receiver
RK79_RS11610	COG0372	Belongs to the citrate synthase family
RK79_RS11615	COG1113	amino acid transport
RK79_RS11640	COG0281	malic enzyme
RK79_RS11650	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
RK79_RS11655	COG4109	DRTGG domain
RK79_RS11700	COG0827	DNA restriction-modification system
RK79_RS11710	COG0730	response to heat
RK79_RS11720	COG1104	cysteine desulfurase activity
RK79_RS11730	COG1956	GAF domain-containing protein
RK79_RS11750	COG0584	glycerophosphoryl diester phosphodiesterase
RK79_RS11755	COG1764	response to oxidative stress
RK79_RS11760	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
RK79_RS11765	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
RK79_RS11780	COG1263	PTS System
RK79_RS11780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RK79_RS11785	COG0204	Acyl-transferase
RK79_RS11790	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
RK79_RS11825	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
RK79_RS11830	COG0454	-acetyltransferase
RK79_RS11850	COG1605	Chorismate mutase
RK79_RS11850	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
RK79_RS11875	COG1674	ftsk spoiiie
RK79_RS11880	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RK79_RS11890	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
RK79_RS11895	COG1363	Peptidase, m42
RK79_RS11905	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
RK79_RS11930	COG0510	thiamine kinase activity
RK79_RS11950	COG1187	pseudouridine synthase activity
RK79_RS11955	COG2244	polysaccharide biosynthetic process
RK79_RS11960	COG2081	HI0933 family
RK79_RS11980	COG2814	Major facilitator Superfamily
RK79_RS11985	COG1242	4 iron, 4 sulfur cluster binding
RK79_RS11990	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
RK79_RS12000	COG2267	carboxylic ester hydrolase activity
RK79_RS12035	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
RK79_RS12035	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
RK79_RS12060	COG5632	N-Acetylmuramoyl-L-alanine amidase
RK79_RS12060	COG4193	domain, Protein
RK79_RS12060	COG3266	domain, Protein
RK79_RS12090	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
RK79_RS12110	COG0656	L-ascorbic acid biosynthetic process
RK79_RS12130	COG1506	peptidase
RK79_RS12135	COG2816	NAD+ diphosphatase activity
RK79_RS12205	COG0732	type I restriction modification DNA specificity domain
RK79_RS12430	COG1131	(ABC) transporter
RK79_RS12435	COG0537	adenosine 5'-monophosphoramidase activity
RK79_RS12470	COG0420	3'-5' exonuclease activity
RK79_RS12495	COG2197	response regulator
RK79_RS12500	COG2203	Gaf domain
RK79_RS12500	COG4585	Histidine kinase
RK79_RS12505	COG0564	pseudouridine synthase activity
RK79_RS12540	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
RK79_RS12545	COG1126	abc transporter atp-binding protein
RK79_RS12550	COG0765	amino acid transport
RK79_RS12720	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
RK79_RS12725	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
RK79_RS12735	COG4129	membrane
RK79_RS12755	COG1988	membrane-bound metal-dependent
RK79_RS12770	COG1134	teichoic acid transport
RK79_RS12770	COG1388	LysM domain
RK79_RS12805	COG0535	radical SAM domain protein
RK79_RS12810	COG1607	acyl-coa hydrolase
RK79_RS12815	COG2309	aminopeptidase activity
RK79_RS12835	COG1295	ribonuclease BN
RK79_RS12840	COG2197	response regulator
RK79_RS12965	COG1733	regulation of RNA biosynthetic process
RK79_RS12970	COG2070	2-Nitropropane dioxygenase
RK79_RS12975	COG4851	CamS sex pheromone cAM373 precursor
RK79_RS12995	COG4496	protein, YerC YecD
RK79_RS13035	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
RK79_RS13045	COG0077	Prephenate dehydratase
RK79_RS13065	COG1335	isochorismatase
RK79_RS13080	COG1012	belongs to the aldehyde dehydrogenase family
RK79_RS13130	COG1131	(ABC) transporter
RK79_RS13145	COG1725	Transcriptional regulator
RK79_RS13200	COG1388	LysM domain
RK79_RS13200	COG0860	N-Acetylmuramoyl-L-alanine amidase
RK79_RS13225	COG1388	LysM domain
RK79_RS13225	COG5632	N-Acetylmuramoyl-L-alanine amidase
RK79_RS13270	COG0739	heme binding
RK79_RS13325	COG4695	Portal protein
RK79_RS13560	COG0156	8-amino-7-oxononanoate synthase activity
RK79_RS13565	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RK79_RS13610	COG2946	Replication initiation factor
RK79_RS13630	COG0433	COG0433 Predicted ATPase
RK79_RS13635	COG1674	ftsk spoiiie
RK79_RS13740	COG0582	viral genome integration into host DNA
RK79_RS13805	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RK79_RS13810	COG1621	beta-fructofuranosidase activity
RK79_RS13815	COG1609	Transcriptional regulator
RK79_RS13820	COG0004	ammonium transporteR
RK79_RS13825	COG0425	Belongs to the sulfur carrier protein TusA family
RK79_RS13830	COG2391	methyltransferase activity
RK79_RS13840	COG0488	(ABC) transporter
RK79_RS13850	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
RK79_RS13865	COG0456	acetyltransferase
RK79_RS13870	COG1214	PFAM Peptidase M22, glycoprotease
RK79_RS13875	COG0802	atpase or kinase
RK79_RS13890	COG0028	Belongs to the TPP enzyme family
RK79_RS13965	COG2183	response to ionizing radiation
RK79_RS13970	COG1191	sigma factor activity
RK79_RS13980	COG1366	Belongs to the anti-sigma-factor antagonist family
RK79_RS13985	COG2208	phosphoserine phosphatase activity
RK79_RS14020	COG3428	Bacterial PH domain
RK79_RS14050	COG2205	protein histidine kinase activity
RK79_RS14055	COG0745	RESPONSE REGULATOR receiver
RK79_RS14065	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
RK79_RS14075	COG0772	Belongs to the SEDS family
RK79_RS14090	COG1937	Protein conserved in bacteria
RK79_RS14100	COG1418	mRNA catabolic process
RK79_RS14145	COG0629	single-stranded DNA binding
RK79_RS14225	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
RK79_RS14250	COG0009	L-threonylcarbamoyladenylate synthase
RK79_RS14255	COG2890	protein-(glutamine-N5) methyltransferase activity
RK79_RS14280	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
RK79_RS14320	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RK79_RS14370	COG0813	purine-nucleoside phosphorylase activity
RK79_RS14375	COG0783	Belongs to the Dps family
RK79_RS14395	COG1482	cell wall glycoprotein biosynthetic process
RK79_RS14400	COG0702	epimerase
RK79_RS14405	COG0640	Transcriptional regulator
RK79_RS14435	COG0561	phosphatase activity
RK79_RS14440	COG1119	ATPase activity
RK79_RS14455	COG3711	transcriptional antiterminator
RK79_RS14485	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
RK79_RS14540	COG0489	protein tyrosine kinase activity
RK79_RS14545	COG2814	Major facilitator Superfamily
RK79_RS14560	COG1272	protein, Hemolysin III
RK79_RS14570	COG1988	membrane-bound metal-dependent
RK79_RS14585	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS14590	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RK79_RS14595	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
RK79_RS14605	COG3457	Alanine racemase
RK79_RS14610	COG4264	IucA IucC family
RK79_RS14615	COG2814	Major facilitator Superfamily
RK79_RS14640	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
RK79_RS14650	COG2130	NADP-dependent
RK79_RS14715	COG0656	L-ascorbic acid biosynthetic process
RK79_RS14730	COG5492	domain, Protein
RK79_RS14735	COG2378	regulation of single-species biofilm formation
RK79_RS14740	COG0693	protein deglycase activity
RK79_RS14750	COG3527	Alpha-acetolactate decarboxylase
RK79_RS14755	COG0028	Belongs to the TPP enzyme family
RK79_RS14840	COG0201	protein transport
RK79_RS14955	COG2252	PERMEase
RK79_RS15020	COG2826	transposase and inactivated derivatives, IS30 family