locus-tag class description RK88_RS00010 PF01048 Phosphorylase superfamily RK88_RS00015 PF01791 DeoC/LacD family aldolase RK88_RS00025 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RK88_RS00025 PF00591 Glycosyl transferase family, a/b domain RK88_RS00025 PF02885 Glycosyl transferase family, helical bundle domain RK88_RS00035 PF02664 S-Ribosylhomocysteinase (LuxS) RK88_RS00055 PF03630 Fumble RK88_RS00065 PF05066 HB1, ASXL, restriction endonuclease HTH domain RK88_RS00070 PF06418 CTP synthase N-terminus RK88_RS00070 PF00117 Glutamine amidotransferase class-I RK88_RS00080 PF01116 Fructose-bisphosphate aldolase class-II RK88_RS00085 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK88_RS00095 PF00171 Aldehyde dehydrogenase family RK88_RS00100 PF07497 Rho termination factor, RNA-binding domain RK88_RS00100 PF07498 Rho termination factor, N-terminal domain RK88_RS00100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK88_RS00105 PF01197 Ribosomal protein L31 RK88_RS00115 PF00265 Thymidine kinase RK88_RS00120 PF00472 RF-1 domain RK88_RS00120 PF03462 PCRF domain RK88_RS00125 PF05175 Methyltransferase small domain RK88_RS00125 PF17827 PrmC N-terminal domain RK88_RS00130 PF01300 Telomere recombination RK88_RS00130 PF03481 Putative GTP-binding controlling metal-binding RK88_RS00135 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK88_RS00140 PF04260 Protein of unknown function (DUF436) RK88_RS00145 PF00464 Serine hydroxymethyltransferase RK88_RS00155 PF02350 UDP-N-acetylglucosamine 2-epimerase RK88_RS00165 PF00119 ATP synthase A chain RK88_RS00170 PF00137 ATP synthase subunit C RK88_RS00175 PF00430 ATP synthase B/B' CF(0) RK88_RS00180 PF00213 ATP synthase delta (OSCP) subunit RK88_RS00185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK88_RS00185 PF00306 ATP synthase alpha/beta chain, C terminal domain RK88_RS00185 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK88_RS00190 PF00231 ATP synthase RK88_RS00195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK88_RS00195 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK88_RS00200 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RK88_RS00200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RK88_RS00220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK88_RS00225 PF07977 FabA-like domain RK88_RS00235 PF00436 Single-strand binding protein family RK88_RS00240 PF06737 Transglycosylase-like domain RK88_RS00250 PF03070 TENA/THI-4/PQQC family RK88_RS00255 PF08543 Phosphomethylpyrimidine kinase RK88_RS00260 PF02110 Hydroxyethylthiazole kinase family RK88_RS00265 PF02581 Thiamine monophosphate synthase RK88_RS00270 PF02096 60Kd inner membrane protein RK88_RS00285 PF01966 HD domain RK88_RS00290 PF13091 PLD-like domain RK88_RS00290 PF13396 Phospholipase_D-nuclease N-terminal RK88_RS00295 PF02583 Metal-sensitive transcriptional repressor RK88_RS00315 PF01098 Cell cycle protein RK88_RS00320 PF07478 D-ala D-ala ligase C-terminus RK88_RS00320 PF01820 D-ala D-ala ligase N-terminus RK88_RS00325 PF08245 Mur ligase middle domain RK88_RS00325 PF02875 Mur ligase family, glutamate ligase domain RK88_RS00325 PF01225 Mur ligase family, catalytic domain RK88_RS00330 PF00270 DEAD/DEAH box helicase RK88_RS00330 PF00271 Helicase conserved C-terminal domain RK88_RS00335 PF00486 Transcriptional regulatory protein, C terminal RK88_RS00335 PF00072 Response regulator receiver domain RK88_RS00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS00340 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS00340 PF13493 Domain of unknown function (DUF4118) RK88_RS00340 PF02702 Osmosensitive K+ channel His kinase sensor domain RK88_RS00350 PF03814 Potassium-transporting ATPase A subunit RK88_RS00360 PF02669 K+-transporting ATPase, c chain RK88_RS00370 PF03703 Bacterial PH domain RK88_RS00380 PF01648 4'-phosphopantetheinyl transferase superfamily RK88_RS00385 PF01168 Alanine racemase, N-terminal domain RK88_RS00385 PF00842 Alanine racemase, C-terminal domain RK88_RS00395 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RK88_RS00405 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RK88_RS00405 PF07228 Stage II sporulation protein E (SpoIIE) RK88_RS00410 PF01740 STAS domain RK88_RS00415 PF13581 Histidine kinase-like ATPase domain RK88_RS00420 PF04539 Sigma-70 region 3 RK88_RS00420 PF04542 Sigma-70 region 2 RK88_RS00420 PF04545 Sigma-70, region 4 RK88_RS00425 PF17674 HHH domain RK88_RS00425 PF00575 S1 RNA binding domain RK88_RS00425 PF09371 Tex-like protein N-terminal domain RK88_RS00425 PF16921 Tex protein YqgF-like domain RK88_RS00430 PF17283 SprT-like zinc ribbon domain RK88_RS00430 PF10263 SprT-like family RK88_RS00470 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS00470 PF00585 C-terminal regulatory domain of Threonine dehydratase RK88_RS00475 PF00694 Aconitase C-terminal domain RK88_RS00480 PF00330 Aconitase family (aconitate hydratase) RK88_RS00485 PF00180 Isocitrate/isopropylmalate dehydrogenase RK88_RS00490 PF00682 HMGL-like RK88_RS00490 PF08502 LeuA allosteric (dimerisation) domain RK88_RS00495 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RK88_RS00495 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RK88_RS00505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS00505 PF00205 Thiamine pyrophosphate enzyme, central domain RK88_RS00505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK88_RS00510 PF00920 Dehydratase family RK88_RS00520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RK88_RS00525 PF00814 Glycoprotease family RK88_RS00530 PF00583 Acetyltransferase (GNAT) family RK88_RS00535 PF00814 Glycoprotease family RK88_RS00540 PF01624 MutS domain I RK88_RS00540 PF05188 MutS domain II RK88_RS00540 PF05192 MutS domain III RK88_RS00540 PF00488 MutS domain V RK88_RS00540 PF05190 MutS family domain IV RK88_RS00550 PF00005 ABC transporter RK88_RS00550 PF12848 ABC transporter RK88_RS00550 PF16326 ABC transporter C-terminal domain RK88_RS00555 PF02629 CoA binding domain RK88_RS00555 PF06971 Putative DNA-binding protein N-terminus RK88_RS00560 PF04143 Sulphur transport RK88_RS00565 PF01206 Sulfurtransferase TusA RK88_RS00570 PF00909 Ammonium Transporter Family RK88_RS00575 PF00356 Bacterial regulatory proteins, lacI family RK88_RS00575 PF13407 Periplasmic binding protein domain RK88_RS00580 PF08244 Glycosyl hydrolases family 32 C terminal RK88_RS00580 PF00251 Glycosyl hydrolases family 32 N-terminal domain RK88_RS00585 PF00294 pfkB family carbohydrate kinase RK88_RS00590 PF00072 Response regulator receiver domain RK88_RS00590 PF04397 LytTr DNA-binding domain RK88_RS00605 PF04647 Accessory gene regulator B RK88_RS00610 PF05372 Delta lysin family RK88_RS00615 PF00795 Carbon-nitrogen hydrolase RK88_RS00630 PF02517 CPBP intramembrane metalloprotease RK88_RS00635 PF00166 Chaperonin 10 Kd subunit RK88_RS00640 PF00118 TCP-1/cpn60 chaperonin family RK88_RS00645 PF14659 Phage integrase, N-terminal SAM-like domain RK88_RS00645 PF00589 Phage integrase family RK88_RS00730 PF03592 Terminase small subunit RK88_RS00730 PF10668 Phage terminase small subunit RK88_RS00775 PF02386 Cation transport protein RK88_RS00780 PF01546 Peptidase family M20/M25/M40 RK88_RS00780 PF07687 Peptidase dimerisation domain RK88_RS00785 PF07968 Leukocidin/Hemolysin toxin family RK88_RS00790 PF07968 Leukocidin/Hemolysin toxin family RK88_RS00825 PF00717 Peptidase S24-like RK88_RS00825 PF01726 LexA DNA binding domain RK88_RS00910 PF00436 Single-strand binding protein family RK88_RS00950 PF00692 dUTPase RK88_RS01000 PF00574 Clp protease RK88_RS01050 PF01551 Peptidase family M23 RK88_RS01050 PF04225 Opacity-associated protein A LysM-like domain RK88_RS01085 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01105 PF01510 N-acetylmuramoyl-L-alanine amidase RK88_RS01105 PF05257 CHAP domain RK88_RS01105 PF08460 Bacterial SH3 domain RK88_RS01110 PF02821 Staphylokinase/Streptokinase family RK88_RS01120 PF08460 Bacterial SH3 domain RK88_RS01120 PF01520 N-acetylmuramoyl-L-alanine amidase RK88_RS01120 PF05257 CHAP domain RK88_RS01125 PF11434 Chemotaxis-inhibiting protein CHIPS RK88_RS01130 PF11546 Staphylococcal complement inhibitor SCIN RK88_RS01155 PF03642 MAP domain RK88_RS01180 PF00392 Bacterial regulatory proteins, gntR family RK88_RS01185 PF00005 ABC transporter RK88_RS01195 PF00005 ABC transporter RK88_RS01240 PF10282 Lactonase, 7-bladed beta-propeller RK88_RS01245 PF00171 Aldehyde dehydrogenase family RK88_RS01255 PF01368 DHH family RK88_RS01255 PF02833 DHHA2 domain RK88_RS01260 PF00857 Isochorismatase family RK88_RS01270 PF00939 Sodium:sulfate symporter transmembrane region RK88_RS01280 PF00800 Prephenate dehydratase RK88_RS01280 PF01842 ACT domain RK88_RS01285 PF02898 Nitric oxide synthase, oxygenase domain RK88_RS01290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RK88_RS01290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RK88_RS01290 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RK88_RS01295 PF02540 NAD synthase RK88_RS01300 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RK88_RS01305 PF14044 NETI protein RK88_RS01315 PF05543 Staphopain peptidase C47 RK88_RS01315 PF14731 Staphopain proregion RK88_RS01320 PF00206 Lyase RK88_RS01320 PF10397 Adenylosuccinate lyase C-terminus RK88_RS01325 PF01371 Trp repressor protein RK88_RS01330 PF01884 PcrB family RK88_RS01335 PF00580 UvrD/REP helicase N-terminal domain RK88_RS01335 PF13361 UvrD-like helicase C-terminal domain RK88_RS01340 PF00533 BRCA1 C Terminus (BRCT) domain RK88_RS01340 PF12826 Helix-hairpin-helix motif RK88_RS01340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RK88_RS01340 PF01653 NAD-dependent DNA ligase adenylation domain RK88_RS01340 PF03120 NAD-dependent DNA ligase OB-fold domain RK88_RS01345 PF07537 CamS sex pheromone cAM373 precursor RK88_RS01350 PF00474 Sodium:solute symporter family RK88_RS01355 PF02686 Glu-tRNAGln amidotransferase C subunit RK88_RS01360 PF01425 Amidase RK88_RS01365 PF02637 GatB domain RK88_RS01365 PF02934 GatB/GatE catalytic domain RK88_RS01375 PF00781 Diacylglycerol kinase catalytic domain RK88_RS01380 PF05958 tRNA (Uracil-5-)-methyltransferase RK88_RS01390 PF00817 impB/mucB/samB family RK88_RS01390 PF11799 impB/mucB/samB family C-terminal domain RK88_RS01405 PF00210 Ferritin-like domain RK88_RS01410 PF08353 Domain of unknown function (DUF1727) RK88_RS01410 PF08245 Mur ligase middle domain RK88_RS01415 PF07685 CobB/CobQ-like glutamine amidotransferase domain RK88_RS01430 PF06081 Aromatic acid exporter family member 1 RK88_RS01450 PF00557 Metallopeptidase family M24 RK88_RS01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS01465 PF07730 Histidine kinase RK88_RS01470 PF00196 Bacterial regulatory proteins, luxR family RK88_RS01470 PF00072 Response regulator receiver domain RK88_RS01475 PF03631 Virulence factor BrkB RK88_RS01485 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK88_RS01490 PF06569 Protein of unknown function (DUF1128) RK88_RS01495 PF02073 Thermophilic metalloprotease (M29) RK88_RS01500 PF03061 Thioesterase superfamily RK88_RS01505 PF08756 YfkB-like domain RK88_RS01505 PF04055 Radical SAM superfamily RK88_RS01515 PF01965 DJ-1/PfpI family RK88_RS01520 PF00912 Transglycosylase RK88_RS01525 PF02631 RecX family RK88_RS01535 PF01476 LysM domain RK88_RS01535 PF00005 ABC transporter RK88_RS01550 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK88_RS01555 PF14815 NUDIX domain RK88_RS01555 PF00730 HhH-GPD superfamily base excision DNA repair protein RK88_RS01560 PF04167 Protein of unknown function (DUF402) RK88_RS01565 PF00005 ABC transporter RK88_RS01565 PF00664 ABC transporter transmembrane region RK88_RS01570 PF06081 Aromatic acid exporter family member 1 RK88_RS01575 PF00202 Aminotransferase class-III RK88_RS01580 PF00578 AhpC/TSA family RK88_RS01585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS01585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS01590 PF01475 Ferric uptake regulator family RK88_RS01750 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS01755 PF00005 ABC transporter RK88_RS01760 PF08331 Domain of unknown function (DUF1730) RK88_RS01765 PF00588 SpoU rRNA Methylase family RK88_RS01785 PF10415 Fumarase C C-terminus RK88_RS01785 PF00206 Lyase RK88_RS01790 PF00849 RNA pseudouridylate synthase RK88_RS01790 PF01479 S4 domain RK88_RS01795 PF13185 GAF domain RK88_RS01795 PF07730 Histidine kinase RK88_RS01800 PF00196 Bacterial regulatory proteins, luxR family RK88_RS01800 PF00072 Response regulator receiver domain RK88_RS01810 PF04286 Protein of unknown function (DUF445) RK88_RS01815 PF06133 Control of competence regulator ComK, YlbF/YmcA RK88_RS01825 PF00149 Calcineurin-like phosphoesterase RK88_RS01835 PF01966 HD domain RK88_RS01840 PF00639 PPIC-type PPIASE domain RK88_RS01855 PF01230 HIT domain RK88_RS01860 PF00005 ABC transporter RK88_RS01880 PF01208 Uroporphyrinogen decarboxylase (URO-D) RK88_RS01945 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01950 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01955 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01960 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01965 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS01970 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS02015 PF00089 Trypsin RK88_RS02020 PF00089 Trypsin RK88_RS02030 PF00089 Trypsin RK88_RS02050 PF02384 N-6 DNA Methylase RK88_RS02050 PF12161 HsdM N-terminal domain RK88_RS02085 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RK88_RS02085 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RK88_RS02085 PF02278 Polysaccharide lyase family 8, super-sandwich domain RK88_RS02160 PF13193 AMP-binding enzyme C-terminal domain RK88_RS02160 PF00501 AMP-binding enzyme RK88_RS02170 PF01809 Putative membrane protein insertion efficiency factor RK88_RS02175 PF00293 NUDIX domain RK88_RS02175 PF09297 NADH pyrophosphatase zinc ribbon domain RK88_RS02180 PF00326 Prolyl oligopeptidase family RK88_RS02185 PF01293 Phosphoenolpyruvate carboxykinase RK88_RS02190 PF00438 S-adenosylmethionine synthetase, N-terminal domain RK88_RS02190 PF02773 S-adenosylmethionine synthetase, C-terminal domain RK88_RS02190 PF02772 S-adenosylmethionine synthetase, central domain RK88_RS02200 PF00248 Aldo/keto reductase family RK88_RS02205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK88_RS02210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK88_RS02220 PF00923 Transaldolase/Fructose-6-phosphate aldolase RK88_RS02245 PF04542 Sigma-70 region 2 RK88_RS02245 PF00196 Bacterial regulatory proteins, luxR family RK88_RS02255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK88_RS02255 PF13457 GW (Gly-Tryp) dipeptide domain RK88_RS02260 PF02040 Arsenical pump membrane protein RK88_RS02265 PF01022 Bacterial regulatory protein, arsR family RK88_RS02275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK88_RS02275 PF01872 RibD C-terminal domain RK88_RS02280 PF00677 Lumazine binding domain RK88_RS02285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RK88_RS02285 PF00925 GTP cyclohydrolase II RK88_RS02290 PF00885 6,7-dimethyl-8-ribityllumazine synthase RK88_RS02295 PF01619 Proline dehydrogenase RK88_RS02310 PF12146 Serine aminopeptidase, S33 RK88_RS02315 PF01047 MarR family RK88_RS02320 PF06962 Putative rRNA methylase RK88_RS02325 PF04055 Radical SAM superfamily RK88_RS02325 PF16199 Radical_SAM C-terminal domain RK88_RS02330 PF07690 Major Facilitator Superfamily RK88_RS02335 PF09334 tRNA synthetases class I (M) RK88_RS02335 PF13603 Leucyl-tRNA synthetase, Domain 2 RK88_RS02335 PF00133 tRNA synthetases class I (I, L, M and V) RK88_RS02335 PF08264 Anticodon-binding domain of tRNA RK88_RS02345 PF04650 YSIRK type signal peptide RK88_RS02345 PF01468 GA module RK88_RS02345 PF07564 Domain of Unknown Function (DUF1542) RK88_RS02355 PF14667 Polysaccharide biosynthesis C-terminal domain RK88_RS02355 PF01943 Polysaccharide biosynthesis protein RK88_RS02360 PF00849 RNA pseudouridylate synthase RK88_RS02360 PF01479 S4 domain RK88_RS02370 PF01546 Peptidase family M20/M25/M40 RK88_RS02370 PF07687 Peptidase dimerisation domain RK88_RS02375 PF01063 Amino-transferase class IV RK88_RS02380 PF01636 Phosphotransferase enzyme family RK88_RS02385 PF02390 Putative methyltransferase RK88_RS02395 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RK88_RS02400 PF00905 Penicillin binding protein transpeptidase domain RK88_RS02400 PF05569 BlaR1 peptidase M56 RK88_RS02405 PF03965 Penicillinase repressor RK88_RS02410 PF02796 Helix-turn-helix domain of resolvase RK88_RS02410 PF00239 Resolvase, N terminal domain RK88_RS02415 PF09299 Mu transposase, C-terminal RK88_RS02415 PF00665 Integrase core domain RK88_RS02420 PF13401 AAA domain RK88_RS02425 PF00753 Metallo-beta-lactamase superfamily RK88_RS02435 PF05343 M42 glutamyl aminopeptidase RK88_RS02440 PF00085 Thioredoxin RK88_RS02445 PF07285 Protein of unknown function (DUF1444) RK88_RS02450 PF01588 Putative tRNA binding domain RK88_RS02450 PF14794 Domain of unknown function (DUF4479) RK88_RS02455 PF01580 FtsK/SpoIIIE family RK88_RS02455 PF09397 Ftsk gamma domain RK88_RS02455 PF17854 FtsK alpha domain RK88_RS02460 PF08245 Mur ligase middle domain RK88_RS02460 PF02875 Mur ligase family, glutamate ligase domain RK88_RS02460 PF01225 Mur ligase family, catalytic domain RK88_RS02465 PF06103 Bacterial protein of unknown function (DUF948) RK88_RS02480 PF00793 DAHP synthetase I family RK88_RS02480 PF01817 Chorismate mutase type II RK88_RS02490 PF00356 Bacterial regulatory proteins, lacI family RK88_RS02495 PF00850 Histone deacetylase domain RK88_RS02500 PF00583 Acetyltransferase (GNAT) family RK88_RS02505 PF00501 AMP-binding enzyme RK88_RS02505 PF13193 AMP-binding enzyme C-terminal domain RK88_RS02510 PF01268 Formate--tetrahydrofolate ligase RK88_RS02525 PF00912 Transglycosylase RK88_RS02525 PF00905 Penicillin binding protein transpeptidase domain RK88_RS02530 PF01479 S4 domain RK88_RS02530 PF00579 tRNA synthetases class I (W and Y) RK88_RS02535 PF13180 PDZ domain RK88_RS02540 PF01553 Acyltransferase RK88_RS02545 PF00367 phosphotransferase system, EIIB RK88_RS02545 PF02378 Phosphotransferase system, EIIC RK88_RS02560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS02560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS02560 PF01842 ACT domain RK88_RS02565 PF00266 Aminotransferase class-V RK88_RS02570 PF02566 OsmC-like protein RK88_RS02575 PF03009 Glycerophosphoryl diester phosphodiesterase family RK88_RS02585 PF01479 S4 domain RK88_RS02585 PF00163 Ribosomal protein S4/S9 N-terminal domain RK88_RS02595 PF13185 GAF domain RK88_RS02600 PF06160 Septation ring formation regulator, EzrA RK88_RS02610 PF00266 Aminotransferase class-V RK88_RS02615 PF02926 THUMP domain RK88_RS02615 PF02568 Thiamine biosynthesis protein (ThiI) RK88_RS02620 PF01925 Sulfite exporter TauE/SafE RK88_RS02625 PF08534 Redoxin RK88_RS02630 PF02384 N-6 DNA Methylase RK88_RS02635 PF00871 Acetokinase family RK88_RS02640 PF00582 Universal stress protein family RK88_RS02645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RK88_RS02645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RK88_RS02655 PF00557 Metallopeptidase family M24 RK88_RS02655 PF01321 Creatinase/Prolidase N-terminal domain RK88_RS02670 PF07085 DRTGG domain RK88_RS02670 PF00571 CBS domain RK88_RS02670 PF03061 Thioesterase superfamily RK88_RS02670 PF00392 Bacterial regulatory proteins, gntR family RK88_RS02675 PF02272 DHHA1 domain RK88_RS02675 PF01368 DHH family RK88_RS02680 PF01336 OB-fold nucleic acid binding domain RK88_RS02680 PF02811 PHP domain RK88_RS02680 PF14579 Helix-hairpin-helix motif RK88_RS02680 PF07733 Bacterial DNA polymerase III alpha NTPase domain RK88_RS02680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RK88_RS02685 PF03949 Malic enzyme, NAD binding domain RK88_RS02685 PF00390 Malic enzyme, N-terminal domain RK88_RS02690 PF01039 Carboxyl transferase domain RK88_RS02690 PF17848 Acetyl-coA carboxylase zinc finger domain RK88_RS02695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RK88_RS02700 PF00365 Phosphofructokinase RK88_RS02705 PF00224 Pyruvate kinase, barrel domain RK88_RS02705 PF00391 PEP-utilising enzyme, mobile domain RK88_RS02705 PF02887 Pyruvate kinase, alpha/beta domain RK88_RS02710 PF00324 Amino acid permease RK88_RS02715 PF00285 Citrate synthase, C-terminal domain RK88_RS02720 PF00180 Isocitrate/isopropylmalate dehydrogenase RK88_RS02730 PF00486 Transcriptional regulatory protein, C terminal RK88_RS02730 PF00072 Response regulator receiver domain RK88_RS02735 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS02735 PF00989 PAS fold RK88_RS02735 PF16736 Single Cache-like RK88_RS02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS02745 PF00476 DNA polymerase family A RK88_RS02745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK88_RS02745 PF01367 5'-3' exonuclease, C-terminal SAM fold RK88_RS02750 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RK88_RS02750 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RK88_RS02750 PF06827 Zinc finger found in FPG and IleRS RK88_RS02755 PF01121 Dephospho-CoA kinase RK88_RS02760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK88_RS02760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK88_RS02765 PF03477 ATP cone domain RK88_RS02775 PF07319 Primosomal protein DnaI N-terminus RK88_RS02775 PF01695 IstB-like ATP binding protein RK88_RS02785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK88_RS02785 PF03129 Anticodon binding domain RK88_RS02785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK88_RS02785 PF02824 TGS domain RK88_RS02790 PF00324 Amino acid permease RK88_RS02795 PF05198 Translation initiation factor IF-3, N-terminal domain RK88_RS02795 PF00707 Translation initiation factor IF-3, C-terminal domain RK88_RS02800 PF01632 Ribosomal protein L35 RK88_RS02805 PF00453 Ribosomal protein L20 RK88_RS02830 PF05698 Bacterial trigger factor protein (TF) C-terminus RK88_RS02830 PF05697 Bacterial trigger factor protein (TF) RK88_RS02830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK88_RS02835 PF06689 ClpX C4-type zinc finger RK88_RS02835 PF07724 AAA domain (Cdc48 subfamily) RK88_RS02835 PF10431 C-terminal, D2-small domain, of ClpB protein RK88_RS02840 PF01926 50S ribosome-binding GTPase RK88_RS02845 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RK88_RS02845 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RK88_RS02845 PF01488 Shikimate / quinate 5-dehydrogenase RK88_RS02850 PF01578 Cytochrome C assembly protein RK88_RS02855 PF03900 Porphobilinogen deaminase, C-terminal domain RK88_RS02855 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RK88_RS02865 PF00490 Delta-aminolevulinic acid dehydratase RK88_RS02870 PF00202 Aminotransferase class-III RK88_RS02885 PF03352 Methyladenine glycosylase RK88_RS02890 PF08264 Anticodon-binding domain of tRNA RK88_RS02890 PF10458 Valyl tRNA synthetase tRNA binding arm RK88_RS02890 PF00133 tRNA synthetases class I (I, L, M and V) RK88_RS02895 PF08245 Mur ligase middle domain RK88_RS02895 PF02875 Mur ligase family, glutamate ligase domain RK88_RS02905 PF06750 Bacterial Peptidase A24 N-terminal domain RK88_RS02905 PF01478 Type IV leader peptidase family RK88_RS02910 PF04002 RadC-like JAB domain RK88_RS02945 PF00829 Ribosomal prokaryotic L21 protein RK88_RS02950 PF04327 Cysteine protease Prp RK88_RS02955 PF01016 Ribosomal L27 protein RK88_RS02960 PF01926 50S ribosome-binding GTPase RK88_RS02960 PF09269 Domain of unknown function (DUF1967) RK88_RS02960 PF01018 GTP1/OBG RK88_RS02970 PF01330 RuvA N terminal domain RK88_RS02970 PF07499 RuvA, C-terminal domain RK88_RS02975 PF05491 RuvB C-terminal winged helix domain RK88_RS02975 PF05496 Holliday junction DNA helicase RuvB P-loop domain RK88_RS02975 PF17864 RuvB AAA lid domain RK88_RS02980 PF02547 Queuosine biosynthesis protein RK88_RS02985 PF01702 Queuine tRNA-ribosyltransferase RK88_RS02990 PF02699 Preprotein translocase subunit RK88_RS02995 PF07549 SecD/SecF GG Motif RK88_RS02995 PF02355 Protein export membrane protein RK88_RS03000 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RK88_RS03000 PF17768 RecJ OB domain RK88_RS03000 PF02272 DHHA1 domain RK88_RS03000 PF01368 DHH family RK88_RS03005 PF00156 Phosphoribosyl transferase domain RK88_RS03010 PF02824 TGS domain RK88_RS03010 PF04607 Region found in RelA / SpoT proteins RK88_RS03010 PF13291 ACT domain RK88_RS03015 PF02580 D-Tyr-tRNA(Tyr) deacylase RK88_RS03020 PF01520 N-acetylmuramoyl-L-alanine amidase RK88_RS03020 PF08239 Bacterial SH3 domain RK88_RS03025 PF03129 Anticodon binding domain RK88_RS03025 PF13393 Histidyl-tRNA synthetase RK88_RS03030 PF02938 GAD domain RK88_RS03030 PF01336 OB-fold nucleic acid binding domain RK88_RS03030 PF00152 tRNA synthetases class II (D, K and N) RK88_RS03045 PF00899 ThiF family RK88_RS03050 PF05496 Holliday junction DNA helicase RuvB P-loop domain RK88_RS03050 PF16193 AAA C-terminal domain RK88_RS03050 PF12002 MgsA AAA+ ATPase C terminal RK88_RS03055 PF02082 Transcriptional regulator RK88_RS03060 PF05532 CsbD-like RK88_RS03070 PF00296 Luciferase-like monooxygenase RK88_RS03075 PF00266 Aminotransferase class-V RK88_RS03090 PF14490 Helix-hairpin-helix containing domain RK88_RS03090 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RK88_RS03090 PF13538 UvrD-like helicase C-terminal domain RK88_RS03095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK88_RS03095 PF01411 tRNA synthetases class II (A) RK88_RS03095 PF02272 DHHA1 domain RK88_RS03100 PF06135 IreB regulatory phosphoprotein RK88_RS03105 PF03652 Holliday junction resolvase RK88_RS03110 PF06949 Protein of unknown function (DUF1292) RK88_RS03130 PF00485 Phosphoribulokinase / Uridine kinase family RK88_RS03135 PF01272 Transcription elongation factor, GreA/GreB, C-term RK88_RS03135 PF03449 Transcription elongation factor, N-terminal RK88_RS03140 PF02682 Carboxyltransferase domain, subdomain C and D RK88_RS03145 PF02626 Carboxyltransferase domain, subdomain A and B RK88_RS03150 PF00364 Biotin-requiring enzyme RK88_RS03155 PF00289 Biotin carboxylase, N-terminal domain RK88_RS03155 PF02785 Biotin carboxylase C-terminal domain RK88_RS03155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK88_RS03160 PF03746 LamB/YcsF family RK88_RS03165 PF01566 Natural resistance-associated macrophage protein RK88_RS03200 PF01048 Phosphorylase superfamily RK88_RS03210 PF01926 50S ribosome-binding GTPase RK88_RS03215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RK88_RS03215 PF08501 Shikimate dehydrogenase substrate binding domain RK88_RS03215 PF01488 Shikimate / quinate 5-dehydrogenase RK88_RS03220 PF01985 CRS1 / YhbY (CRM) domain RK88_RS03225 PF01467 Cytidylyltransferase-like RK88_RS03230 PF01966 HD domain RK88_RS03240 PF13649 Methyltransferase domain RK88_RS03250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK88_RS03255 PF03772 Competence protein RK88_RS03255 PF00753 Metallo-beta-lactamase superfamily RK88_RS03255 PF13567 Domain of unknown function (DUF4131) RK88_RS03260 PF06144 DNA polymerase III, delta subunit RK88_RS03265 PF01649 Ribosomal protein S20 RK88_RS03270 PF00679 Elongation factor G C-terminus RK88_RS03270 PF03144 Elongation factor Tu domain 2 RK88_RS03270 PF06421 GTP-binding protein LepA C-terminus RK88_RS03270 PF00009 Elongation factor Tu GTP binding domain RK88_RS03280 PF04055 Radical SAM superfamily RK88_RS03280 PF06969 HemN C-terminal domain RK88_RS03285 PF01628 HrcA protein C terminal domain RK88_RS03290 PF01025 GrpE RK88_RS03295 PF00012 Hsp70 protein RK88_RS03300 PF00684 DnaJ central domain RK88_RS03300 PF01556 DnaJ C terminal domain RK88_RS03300 PF00226 DnaJ domain RK88_RS03310 PF04452 RNA methyltransferase RK88_RS03315 PF04055 Radical SAM superfamily RK88_RS03315 PF01938 TRAM domain RK88_RS03315 PF00919 Uncharacterized protein family UPF0004 RK88_RS03320 PF01165 Ribosomal protein S21 RK88_RS03325 PF01957 NfeD-like C-terminal, partner-binding RK88_RS03325 PF01972 Serine dehydrogenase proteinase RK88_RS03330 PF12127 SigmaW regulon antibacterial RK88_RS03340 PF02562 PhoH-like protein RK88_RS03345 PF02130 Uncharacterized protein family UPF0054 RK88_RS03355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK88_RS03360 PF07650 KH domain RK88_RS03360 PF01926 50S ribosome-binding GTPase RK88_RS03365 PF11967 Recombination protein O N terminal RK88_RS03365 PF02565 Recombination protein O C terminal RK88_RS03370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK88_RS03370 PF03129 Anticodon binding domain RK88_RS03375 PF00571 CBS domain RK88_RS03375 PF08279 HTH domain RK88_RS03380 PF03618 Kinase/pyrophosphorylase RK88_RS03385 PF00772 DnaB-like helicase N terminal domain RK88_RS03385 PF01807 CHC2 zinc finger RK88_RS03385 PF08275 DNA primase catalytic core, N-terminal domain RK88_RS03390 PF04542 Sigma-70 region 2 RK88_RS03390 PF04545 Sigma-70, region 4 RK88_RS03390 PF04539 Sigma-70 region 3 RK88_RS03390 PF03979 Sigma-70 factor, region 1.1 RK88_RS03390 PF00140 Sigma-70 factor, region 1.2 RK88_RS03395 PF04816 tRNA (adenine(22)-N(1))-methyltransferase RK88_RS03400 PF01784 NIF3 (NGG1p interacting factor 3) RK88_RS03405 PF00271 Helicase conserved C-terminal domain RK88_RS03405 PF00270 DEAD/DEAH box helicase RK88_RS03410 PF01261 Xylose isomerase-like TIM barrel RK88_RS03415 PF00005 ABC transporter RK88_RS03420 PF00950 ABC 3 transport family RK88_RS03425 PF01475 Ferric uptake regulator family RK88_RS03430 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK88_RS03430 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK88_RS03440 PF00471 Ribosomal protein L33 RK88_RS03445 PF01812 5-formyltetrahydrofolate cyclo-ligase family RK88_RS03455 PF06014 Bacterial protein of unknown function (DUF910) RK88_RS03460 PF00480 ROK family RK88_RS03465 PF01910 Thiamine-binding protein RK88_RS03470 PF00753 Metallo-beta-lactamase superfamily RK88_RS03475 PF00437 Type II/IV secretion system protein RK88_RS03480 PF00482 Type II secretion system (T2SS), protein F RK88_RS03485 PF07963 Prokaryotic N-terminal methylation motif RK88_RS03510 PF01202 Shikimate kinase RK88_RS03515 PF01571 Aminomethyltransferase folate-binding domain RK88_RS03515 PF08669 Glycine cleavage T-protein C-terminal barrel domain RK88_RS03520 PF02347 Glycine cleavage system P-protein RK88_RS03525 PF00266 Aminotransferase class-V RK88_RS03530 PF00581 Rhodanese-like domain RK88_RS03535 PF03099 Biotin/lipoate A/B protein ligase family RK88_RS03550 PF00557 Metallopeptidase family M24 RK88_RS03550 PF01321 Creatinase/Prolidase N-terminal domain RK88_RS03555 PF08207 Elongation factor P (EF-P) KOW-like domain RK88_RS03555 PF09285 Elongation factor P, C-terminal RK88_RS03555 PF01132 Elongation factor P (EF-P) OB domain RK88_RS03560 PF00364 Biotin-requiring enzyme RK88_RS03565 PF02785 Biotin carboxylase C-terminal domain RK88_RS03565 PF00289 Biotin carboxylase, N-terminal domain RK88_RS03565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK88_RS03570 PF03780 Asp23 family, cell envelope-related function RK88_RS03575 PF01029 NusB family RK88_RS03580 PF13742 OB-fold nucleic acid binding domain RK88_RS03580 PF02601 Exonuclease VII, large subunit RK88_RS03585 PF02609 Exonuclease VII small subunit RK88_RS03590 PF00348 Polyprenyl synthetase RK88_RS03595 PF02863 Arginine repressor, C-terminal domain RK88_RS03595 PF01316 Arginine repressor, DNA binding domain RK88_RS03600 PF13476 AAA domain RK88_RS03605 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS03605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK88_RS03610 PF00676 Dehydrogenase E1 component RK88_RS03615 PF02780 Transketolase, C-terminal domain RK88_RS03615 PF02779 Transketolase, pyrimidine binding domain RK88_RS03620 PF00364 Biotin-requiring enzyme RK88_RS03620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK88_RS03620 PF02817 e3 binding domain RK88_RS03625 PF06491 Disulphide isomerase RK88_RS03630 PF11728 Putative aromatic acid exporter C-terminal domain RK88_RS03630 PF06081 Aromatic acid exporter family member 1 RK88_RS03640 PF07687 Peptidase dimerisation domain RK88_RS03640 PF01546 Peptidase family M20/M25/M40 RK88_RS03645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK88_RS03645 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RK88_RS03670 PF00356 Bacterial regulatory proteins, lacI family RK88_RS03675 PF00128 Alpha amylase, catalytic domain RK88_RS03675 PF16657 Maltogenic Amylase, C-terminal domain RK88_RS03685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RK88_RS03685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RK88_RS03690 PF12706 Beta-lactamase superfamily domain RK88_RS03695 PF03807 NADP oxidoreductase coenzyme F420-dependent RK88_RS03695 PF14748 Pyrroline-5-carboxylate reductase dimerisation RK88_RS03700 PF00106 short chain dehydrogenase RK88_RS03710 PF00248 Aldo/keto reductase family RK88_RS03715 PF00293 NUDIX domain RK88_RS03720 PF01475 Ferric uptake regulator family RK88_RS03725 PF02899 Phage integrase, N-terminal SAM-like domain RK88_RS03725 PF00589 Phage integrase family RK88_RS03735 PF02616 Segregation and condensation protein ScpA RK88_RS03740 PF04079 Segregation and condensation complex subunit ScpB RK88_RS03745 PF01479 S4 domain RK88_RS03745 PF00849 RNA pseudouridylate synthase RK88_RS03750 PF00486 Transcriptional regulatory protein, C terminal RK88_RS03750 PF00072 Response regulator receiver domain RK88_RS03755 PF18698 Histidine kinase sensor domain RK88_RS03755 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS03755 PF00672 HAMP domain RK88_RS03785 PF12822 ECF transporter, substrate-specific component RK88_RS03800 PF00270 DEAD/DEAH box helicase RK88_RS03800 PF00271 Helicase conserved C-terminal domain RK88_RS03805 PF01476 LysM domain RK88_RS03820 PF00710 Asparaginase, N-terminal RK88_RS03820 PF17763 Glutaminase/Asparaginase C-terminal domain RK88_RS03825 PF02224 Cytidylate kinase RK88_RS03845 PF00575 S1 RNA binding domain RK88_RS03850 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RK88_RS03850 PF01926 50S ribosome-binding GTPase RK88_RS03855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RK88_RS03855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RK88_RS03860 PF00216 Bacterial DNA-binding protein RK88_RS03875 PF01209 ubiE/COQ5 methyltransferase family RK88_RS03880 PF00348 Polyprenyl synthetase RK88_RS03885 PF00334 Nucleoside diphosphate kinase RK88_RS03890 PF01264 Chorismate synthase RK88_RS03895 PF01761 3-dehydroquinate synthase RK88_RS03900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK88_RS03910 PF08864 UPF0302 domain RK88_RS03910 PF08858 IDEAL domain RK88_RS03915 PF07187 Protein of unknown function (DUF1405) RK88_RS03920 PF04298 Putative neutral zinc metallopeptidase RK88_RS03925 PF03819 MazG nucleotide pyrophosphohydrolase domain RK88_RS03930 PF00534 Glycosyl transferases group 1 RK88_RS03930 PF13439 Glycosyltransferase Family 4 RK88_RS03935 PF01743 Poly A polymerase head domain RK88_RS03935 PF12627 Probable RNA and SrmB- binding site of polymerase A RK88_RS03935 PF13735 tRNA nucleotidyltransferase domain 2 putative RK88_RS03940 PF02237 Biotin protein ligase C terminal domain RK88_RS03940 PF03099 Biotin/lipoate A/B protein ligase family RK88_RS03940 PF08279 HTH domain RK88_RS03945 PF13307 Helicase C-terminal domain RK88_RS03945 PF00929 Exonuclease RK88_RS03950 PF01336 OB-fold nucleic acid binding domain RK88_RS03950 PF00152 tRNA synthetases class II (D, K and N) RK88_RS03955 PF07261 Replication initiation and membrane attachment RK88_RS03960 PF00730 HhH-GPD superfamily base excision DNA repair protein RK88_RS03960 PF00633 Helix-hairpin-helix motif RK88_RS03960 PF10576 Iron-sulfur binding domain of endonuclease III RK88_RS03970 PF00905 Penicillin binding protein transpeptidase domain RK88_RS03970 PF00912 Transglycosylase RK88_RS03975 PF03838 Recombination protein U RK88_RS03990 PF06908 YspA SLOG family RK88_RS03995 PF05103 DivIVA protein RK88_RS04005 PF01170 Putative RNA methylase family UPF0020 RK88_RS04005 PF02926 THUMP domain RK88_RS04025 PF00350 Dynamin family RK88_RS04030 PF01367 5'-3' exonuclease, C-terminal SAM fold RK88_RS04030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK88_RS04035 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RK88_RS04035 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RK88_RS04040 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS04045 PF13520 Amino acid permease RK88_RS04050 PF07690 Major Facilitator Superfamily RK88_RS04055 PF01468 GA module RK88_RS04055 PF04650 YSIRK type signal peptide RK88_RS04055 PF07564 Domain of Unknown Function (DUF1542) RK88_RS04065 PF02592 Putative vitamin uptake transporter RK88_RS04070 PF10782 Zinc-finger RK88_RS04075 PF13769 Virulence factor RK88_RS04075 PF08712 Scaffold protein Nfu/NifU N terminal RK88_RS04080 PF08712 Scaffold protein Nfu/NifU N terminal RK88_RS04080 PF13769 Virulence factor RK88_RS04085 PF06491 Disulphide isomerase RK88_RS04090 PF00303 Thymidylate synthase RK88_RS04095 PF00186 Dihydrofolate reductase RK88_RS04100 PF02645 Uncharacterised protein, DegV family COG1307 RK88_RS04105 PF01625 Peptide methionine sulfoxide reductase RK88_RS04110 PF01641 SelR domain RK88_RS04115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK88_RS04120 PF06855 YozE SAM-like fold RK88_RS04125 PF13936 Helix-turn-helix domain RK88_RS04125 PF00665 Integrase core domain RK88_RS04130 PF13180 PDZ domain RK88_RS04130 PF01471 Putative peptidoglycan binding domain RK88_RS04130 PF03572 Peptidase family S41 RK88_RS04140 PF04101 Glycosyltransferase family 28 C-terminal domain RK88_RS04140 PF03033 Glycosyltransferase family 28 N-terminal domain RK88_RS04145 PF01569 PAP2 superfamily RK88_RS04160 PF00486 Transcriptional regulatory protein, C terminal RK88_RS04160 PF00072 Response regulator receiver domain RK88_RS04165 PF18719 ArlS sensor domain RK88_RS04165 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS04170 PF00676 Dehydrogenase E1 component RK88_RS04170 PF02779 Transketolase, pyrimidine binding domain RK88_RS04170 PF16870 2-oxoglutarate dehydrogenase C-terminal RK88_RS04175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK88_RS04175 PF00364 Biotin-requiring enzyme RK88_RS04175 PF02817 e3 binding domain RK88_RS04190 PF08406 CbbQ/NirQ/NorQ C-terminal RK88_RS04190 PF07728 AAA domain (dynein-related subfamily) RK88_RS04195 PF00092 von Willebrand factor type A domain RK88_RS04200 PF05525 Branched-chain amino acid transport protein RK88_RS04205 PF05816 Toxic anion resistance protein (TelA) RK88_RS04215 PF00708 Acylphosphatase RK88_RS04230 PF00313 'Cold-shock' DNA-binding domain RK88_RS04240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK88_RS04240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK88_RS04245 PF00842 Alanine racemase, C-terminal domain RK88_RS04245 PF01168 Alanine racemase, N-terminal domain RK88_RS04250 PF07687 Peptidase dimerisation domain RK88_RS04250 PF01546 Peptidase family M20/M25/M40 RK88_RS04255 PF00132 Bacterial transferase hexapeptide (six repeats) RK88_RS04255 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal RK88_RS04255 PF14602 Hexapeptide repeat of succinyl-transferase RK88_RS04260 PF05173 Dihydrodipicolinate reductase, C-terminus RK88_RS04260 PF01113 Dihydrodipicolinate reductase, N-terminus RK88_RS04265 PF00701 Dihydrodipicolinate synthetase family RK88_RS04270 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK88_RS04270 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK88_RS04275 PF00696 Amino acid kinase family RK88_RS04275 PF13840 ACT domain RK88_RS04275 PF01842 ACT domain RK88_RS04280 PF00005 ABC transporter RK88_RS04280 PF12848 ABC transporter RK88_RS04285 PF17783 CvfB-like winged helix domain RK88_RS04285 PF13509 S1 domain RK88_RS04290 PF12849 PBP superfamily domain RK88_RS04295 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS04300 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS04305 PF00005 ABC transporter RK88_RS04310 PF01895 PhoU domain RK88_RS04315 PF08439 Oligopeptidase F RK88_RS04315 PF01432 Peptidase family M3 RK88_RS04330 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS04335 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS04340 PF00005 ABC transporter RK88_RS04345 PF00005 ABC transporter RK88_RS04360 PF02388 FemAB family RK88_RS04365 PF02388 FemAB family RK88_RS04370 PF00290 Tryptophan synthase alpha chain RK88_RS04375 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS04380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RK88_RS04385 PF00218 Indole-3-glycerol phosphate synthase RK88_RS04395 PF00117 Glutamine amidotransferase class-I RK88_RS04400 PF04715 Anthranilate synthase component I, N terminal region RK88_RS04400 PF00425 chorismate binding enzyme RK88_RS04405 PF05343 M42 glutamyl aminopeptidase RK88_RS04410 PF02153 Prephenate dehydrogenase RK88_RS04415 PF00817 impB/mucB/samB family RK88_RS04415 PF11799 impB/mucB/samB family C-terminal domain RK88_RS04415 PF11798 IMS family HHH motif RK88_RS04420 PF01361 Tautomerase enzyme RK88_RS04430 PF03816 Cell envelope-related transcriptional attenuator domain RK88_RS04435 PF01625 Peptide methionine sulfoxide reductase RK88_RS04440 PF09924 Uncharacterised conserved protein (DUF2156) RK88_RS04440 PF03706 Lysylphosphatidylglycerol synthase TM region RK88_RS04445 PF01594 AI-2E family transporter RK88_RS04455 PF00874 PRD domain RK88_RS04455 PF03123 CAT RNA binding domain RK88_RS04460 PF01235 Sodium:alanine symporter family RK88_RS04470 PF03989 DNA gyrase C-terminal domain, beta-propeller RK88_RS04470 PF00521 DNA gyrase/topoisomerase IV, subunit A RK88_RS04475 PF00986 DNA gyrase B subunit, carboxyl terminus RK88_RS04475 PF00204 DNA gyrase B RK88_RS04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS04475 PF01751 Toprim domain RK88_RS04480 PF02660 Glycerol-3-phosphate acyltransferase RK88_RS04500 PF03061 Thioesterase superfamily RK88_RS04505 PF00330 Aconitase family (aconitate hydratase) RK88_RS04505 PF00694 Aconitase C-terminal domain RK88_RS04510 PF02028 BCCT, betaine/carnitine/choline family transporter RK88_RS04515 PF01741 Large-conductance mechanosensitive channel, MscL RK88_RS04520 PF13476 AAA domain RK88_RS04525 PF12320 Type 5 capsule protein repressor C-terminal domain RK88_RS04525 PF00149 Calcineurin-like phosphoesterase RK88_RS04530 PF07301 Protein of unknown function (DUF1453) RK88_RS04540 PF03672 Uncharacterised protein family (UPF0154) RK88_RS04545 PF02779 Transketolase, pyrimidine binding domain RK88_RS04545 PF02780 Transketolase, C-terminal domain RK88_RS04545 PF00456 Transketolase, thiamine diphosphate binding domain RK88_RS04550 PF05979 Bacterial protein of unknown function (DUF896) RK88_RS04560 PF01726 LexA DNA binding domain RK88_RS04560 PF00717 Peptidase S24-like RK88_RS04575 PF00478 IMP dehydrogenase / GMP reductase domain RK88_RS04580 PF00253 Ribosomal protein S14p/S29e RK88_RS04585 PF00471 Ribosomal protein L33 RK88_RS04590 PF06628 Catalase-related immune-responsive RK88_RS04590 PF00199 Catalase RK88_RS04595 PF00324 Amino acid permease RK88_RS04615 PF00288 GHMP kinases N terminal domain RK88_RS04615 PF08544 GHMP kinases C terminal RK88_RS04620 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS04625 PF03447 Homoserine dehydrogenase, NAD binding domain RK88_RS04625 PF00742 Homoserine dehydrogenase RK88_RS04625 PF01842 ACT domain RK88_RS04630 PF00696 Amino acid kinase family RK88_RS04630 PF13840 ACT domain RK88_RS04645 PF00565 Staphylococcal nuclease homologue RK88_RS04660 PF00072 Response regulator receiver domain RK88_RS04660 PF00196 Bacterial regulatory proteins, luxR family RK88_RS04675 PF00005 ABC transporter RK88_RS04680 PF13396 Phospholipase_D-nuclease N-terminal RK88_RS04680 PF13091 PLD-like domain RK88_RS04785 PF13936 Helix-turn-helix domain RK88_RS04785 PF00665 Integrase core domain RK88_RS04825 PF02486 Replication initiation factor RK88_RS04825 PF18106 Rolling Circle replication initiation protein N-terminal domain RK88_RS04885 PF03951 Glutamine synthetase, beta-Grasp domain RK88_RS04885 PF00120 Glutamine synthetase, catalytic domain RK88_RS04890 PF13411 MerR HTH family regulatory protein RK88_RS04895 PF06838 Methionine gamma-lyase RK88_RS04905 PF00255 Glutathione peroxidase RK88_RS04910 PF17209 Hfq protein RK88_RS04925 PF01266 FAD dependent oxidoreductase RK88_RS04925 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RK88_RS04930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK88_RS04930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK88_RS04935 PF00230 Major intrinsic protein RK88_RS04940 PF04309 Glycerol-3-phosphate responsive antiterminator RK88_RS04945 PF01119 DNA mismatch repair protein, C-terminal domain RK88_RS04945 PF08676 MutL C terminal dimerisation domain RK88_RS04950 PF00488 MutS domain V RK88_RS04950 PF05190 MutS family domain IV RK88_RS04950 PF05192 MutS domain III RK88_RS04950 PF05188 MutS domain II RK88_RS04950 PF01624 MutS domain I RK88_RS04965 PF00919 Uncharacterized protein family UPF0004 RK88_RS04965 PF01938 TRAM domain RK88_RS04965 PF04055 Radical SAM superfamily RK88_RS04970 PF01910 Thiamine-binding protein RK88_RS04975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS04980 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RK88_RS04980 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RK88_RS04980 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RK88_RS04985 PF13277 YmdB-like protein RK88_RS04995 PF01966 HD domain RK88_RS04995 PF00013 KH domain RK88_RS04995 PF12072 Domain of unknown function (DUF3552) RK88_RS05000 PF00154 recA bacterial DNA recombination protein RK88_RS05005 PF02464 Competence-damaged protein RK88_RS05005 PF18146 Damage-inducible protein CinA KH domain RK88_RS05005 PF00994 Probable molybdopterin binding domain RK88_RS05010 PF01066 CDP-alcohol phosphatidyltransferase RK88_RS05020 PF11868 Protein of unknown function (DUF3388) RK88_RS05030 PF05193 Peptidase M16 inactive domain RK88_RS05030 PF00675 Insulinase (Peptidase family M16) RK88_RS05035 PF05193 Peptidase M16 inactive domain RK88_RS05040 PF00392 Bacterial regulatory proteins, gntR family RK88_RS05040 PF07702 UTRA domain RK88_RS05045 PF17854 FtsK alpha domain RK88_RS05045 PF09397 Ftsk gamma domain RK88_RS05045 PF01580 FtsK/SpoIIIE family RK88_RS05050 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RK88_RS05050 PF17770 Ribonuclease J C-terminal domain RK88_RS05050 PF00753 Metallo-beta-lactamase superfamily RK88_RS05060 PF00013 KH domain RK88_RS05060 PF00575 S1 RNA binding domain RK88_RS05060 PF03725 3' exoribonuclease family, domain 2 RK88_RS05060 PF01138 3' exoribonuclease family, domain 1 RK88_RS05060 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RK88_RS05065 PF00312 Ribosomal protein S15 RK88_RS05070 PF06574 FAD synthetase RK88_RS05070 PF01687 Riboflavin kinase RK88_RS05075 PF01509 TruB family pseudouridylate synthase (N terminal domain) RK88_RS05075 PF16198 tRNA pseudouridylate synthase B C-terminal domain RK88_RS05080 PF02033 Ribosome-binding factor A RK88_RS05085 PF00009 Elongation factor Tu GTP binding domain RK88_RS05085 PF04760 Translation initiation factor IF-2, N-terminal region RK88_RS05085 PF11987 Translation-initiation factor 2 RK88_RS05090 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RK88_RS05095 PF04296 Protein of unknown function (DUF448) RK88_RS05100 PF00575 S1 RNA binding domain RK88_RS05100 PF13184 NusA-like KH domain RK88_RS05100 PF08529 NusA N-terminal domain RK88_RS05105 PF02576 RimP N-terminal domain RK88_RS05105 PF17384 RimP C-terminal SH3 domain RK88_RS05115 PF07733 Bacterial DNA polymerase III alpha NTPase domain RK88_RS05115 PF11490 DNA polymerase III polC-type N-terminus II RK88_RS05115 PF14480 DNA polymerase III polC-type N-terminus I RK88_RS05115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RK88_RS05115 PF14579 Helix-hairpin-helix motif RK88_RS05115 PF02811 PHP domain RK88_RS05115 PF00929 Exonuclease RK88_RS05120 PF03129 Anticodon binding domain RK88_RS05120 PF04073 Aminoacyl-tRNA editing domain RK88_RS05120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK88_RS05125 PF02163 Peptidase family M50 RK88_RS05125 PF13180 PDZ domain RK88_RS05135 PF01255 Putative undecaprenyl diphosphate synthase RK88_RS05140 PF01765 Ribosome recycling factor RK88_RS05145 PF00696 Amino acid kinase family RK88_RS05150 PF00889 Elongation factor TS RK88_RS05160 PF00318 Ribosomal protein S2 RK88_RS05170 PF06018 CodY GAF-like domain RK88_RS05170 PF08222 CodY helix-turn-helix domain RK88_RS05175 PF10431 C-terminal, D2-small domain, of ClpB protein RK88_RS05175 PF07724 AAA domain (Cdc48 subfamily) RK88_RS05175 PF00004 ATPase family associated with various cellular activities (AAA) RK88_RS05180 PF00227 Proteasome subunit RK88_RS05185 PF00589 Phage integrase family RK88_RS05185 PF02899 Phage integrase, N-terminal SAM-like domain RK88_RS05190 PF01134 Glucose inhibited division protein A RK88_RS05195 PF01751 Toprim domain RK88_RS05195 PF01131 DNA topoisomerase RK88_RS05195 PF01396 Topoisomerase DNA binding C4 zinc finger RK88_RS05205 PF02388 FemAB family RK88_RS05210 PF01476 LysM domain RK88_RS05210 PF05257 CHAP domain RK88_RS05215 PF02629 CoA binding domain RK88_RS05215 PF00549 CoA-ligase RK88_RS05220 PF08442 ATP-grasp domain RK88_RS05220 PF00549 CoA-ligase RK88_RS05225 PF01351 Ribonuclease HII RK88_RS05230 PF01926 50S ribosome-binding GTPase RK88_RS05240 PF01245 Ribosomal protein L19 RK88_RS05245 PF01746 tRNA (Guanine-1)-methyltransferase RK88_RS05250 PF05239 PRC-barrel domain RK88_RS05250 PF01782 RimM N-terminal domain RK88_RS05255 PF00886 Ribosomal protein S16 RK88_RS05260 PF02881 SRP54-type protein, helical bundle domain RK88_RS05260 PF02978 Signal peptide binding domain RK88_RS05260 PF00448 SRP54-type protein, GTPase domain RK88_RS05265 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RK88_RS05270 PF02881 SRP54-type protein, helical bundle domain RK88_RS05270 PF00448 SRP54-type protein, GTPase domain RK88_RS05275 PF02463 RecF/RecN/SMC N terminal domain RK88_RS05275 PF06470 SMC proteins Flexible Hinge Domain RK88_RS05280 PF14622 Ribonuclease-III-like RK88_RS05280 PF00035 Double-stranded RNA binding motif RK88_RS05285 PF00550 Phosphopantetheine attachment site RK88_RS05300 PF00698 Acyl transferase domain RK88_RS05305 PF02504 Fatty acid synthesis protein RK88_RS05310 PF03061 Thioesterase superfamily RK88_RS05315 PF00270 DEAD/DEAH box helicase RK88_RS05315 PF17191 RecG wedge domain RK88_RS05315 PF00271 Helicase conserved C-terminal domain RK88_RS05320 PF02734 DAK2 domain RK88_RS05320 PF13684 Dihydroxyacetone kinase family RK88_RS05325 PF03780 Asp23 family, cell envelope-related function RK88_RS05330 PF00830 Ribosomal L28 family RK88_RS05340 PF00834 Ribulose-phosphate 3 epimerase family RK88_RS05345 PF03193 RsgA GTPase RK88_RS05345 PF16745 RsgA N-terminal domain RK88_RS05350 PF03793 PASTA domain RK88_RS05350 PF00069 Protein kinase domain RK88_RS05360 PF04055 Radical SAM superfamily RK88_RS05365 PF01189 16S rRNA methyltransferase RsmB/F RK88_RS05365 PF01029 NusB family RK88_RS05370 PF02911 Formyl transferase, C-terminal domain RK88_RS05370 PF00551 Formyl transferase RK88_RS05375 PF01327 Polypeptide deformylase RK88_RS05380 PF05154 TM2 domain RK88_RS05390 PF17764 3′ DNA-binding domain (3′BD) RK88_RS05390 PF00271 Helicase conserved C-terminal domain RK88_RS05390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RK88_RS05390 PF04851 Type III restriction enzyme, res subunit RK88_RS05390 PF18074 Primosomal protein N C-terminal domain RK88_RS05395 PF02441 Flavoprotein RK88_RS05395 PF04127 DNA / pantothenate metabolism flavoprotein RK88_RS05400 PF01192 RNA polymerase Rpb6 RK88_RS05405 PF00625 Guanylate kinase RK88_RS05410 PF05670 NFACT protein RNA binding domain RK88_RS05425 PF00156 Phosphoribosyl transferase domain RK88_RS05430 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK88_RS05435 PF02142 MGS-like domain RK88_RS05435 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RK88_RS05435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK88_RS05440 PF00117 Glutamine amidotransferase class-I RK88_RS05440 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RK88_RS05445 PF01979 Amidohydrolase family RK88_RS05450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK88_RS05450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK88_RS05455 PF00860 Permease family RK88_RS05460 PF00156 Phosphoribosyl transferase domain RK88_RS05465 PF01479 S4 domain RK88_RS05465 PF00849 RNA pseudouridylate synthase RK88_RS05470 PF01252 Signal peptidase (SPase) II RK88_RS05475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK88_RS05485 PF08264 Anticodon-binding domain of tRNA RK88_RS05485 PF00133 tRNA synthetases class I (I, L, M and V) RK88_RS05485 PF06827 Zinc finger found in FPG and IleRS RK88_RS05490 PF05103 DivIVA protein RK88_RS05495 PF01479 S4 domain RK88_RS05495 PF17774 Putative RNA-binding domain in YlmH RK88_RS05500 PF02325 YGGT family RK88_RS05505 PF04472 Cell division protein SepF RK88_RS05510 PF01168 Alanine racemase, N-terminal domain RK88_RS05520 PF00091 Tubulin/FtsZ family, GTPase domain RK88_RS05520 PF12327 FtsZ family, C-terminal domain RK88_RS05525 PF02491 SHS2 domain inserted in FTSA RK88_RS05530 PF03799 Cell division protein FtsQ RK88_RS05530 PF08478 POTRA domain, FtsQ-type RK88_RS05535 PF02875 Mur ligase family, glutamate ligase domain RK88_RS05535 PF08245 Mur ligase middle domain RK88_RS05540 PF00953 Glycosyl transferase family 4 RK88_RS05550 PF04977 Septum formation initiator RK88_RS05555 PF01795 MraW methylase family RK88_RS05560 PF02381 MraZ protein, putative antitoxin-like RK88_RS05565 PF10079 Bacillithiol biosynthesis BshC RK88_RS05575 PF13419 Haloacid dehalogenase-like hydrolase RK88_RS05580 PF05480 Staphylococcus haemolytic protein RK88_RS05605 PF03606 C4-dicarboxylate anaerobic carrier RK88_RS05610 PF00696 Amino acid kinase family RK88_RS05615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK88_RS05615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK88_RS05620 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS05625 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS05630 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS05675 PF11546 Staphylococcal complement inhibitor SCIN RK88_RS05680 PF12199 Extracellular fibrinogen binding protein C terminal RK88_RS05690 PF16104 Formyl peptide receptor-like 1 inhibitory protein RK88_RS05715 PF01725 Ham1 family RK88_RS05720 PF01177 Asp/Glu/Hydantoin racemase RK88_RS05725 PF13183 4Fe-4S dicluster domain RK88_RS05725 PF13085 2Fe-2S iron-sulfur cluster binding domain RK88_RS05730 PF02910 Fumarate reductase flavoprotein C-term RK88_RS05730 PF00890 FAD binding domain RK88_RS05735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RK88_RS05740 PF02151 UvrB/uvrC motif RK88_RS05740 PF08459 UvrC Helix-hairpin-helix N-terminal RK88_RS05740 PF01541 GIY-YIG catalytic domain RK88_RS05750 PF00085 Thioredoxin RK88_RS05755 PF01713 Smr domain RK88_RS05755 PF00488 MutS domain V RK88_RS05760 PF02811 PHP domain RK88_RS05760 PF14791 DNA polymerase beta thumb RK88_RS05760 PF14716 Helix-hairpin-helix domain RK88_RS05770 PF05164 Cell division protein ZapA RK88_RS05775 PF01351 Ribonuclease HII RK88_RS05775 PF11858 Domain of unknown function (DUF3378) RK88_RS05785 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RK88_RS05785 PF01588 Putative tRNA binding domain RK88_RS05785 PF03147 Ferredoxin-fold anticodon binding domain RK88_RS05785 PF03484 tRNA synthetase B5 domain RK88_RS05785 PF03483 B3/4 domain RK88_RS05790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RK88_RS05790 PF01409 tRNA synthetases class II core domain (F) RK88_RS05795 PF00588 SpoU rRNA Methylase family RK88_RS05795 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK88_RS05800 PF13936 Helix-turn-helix domain RK88_RS05800 PF00665 Integrase core domain RK88_RS05810 PF03992 Antibiotic biosynthesis monooxygenase RK88_RS05815 PF04203 Sortase domain RK88_RS05820 PF01032 FecCD transport family RK88_RS05825 PF01497 Periplasmic binding protein RK88_RS05835 PF05031 Iron Transport-associated domain RK88_RS05840 PF05031 Iron Transport-associated domain RK88_RS05840 PF00746 LPXTG cell wall anchor motif RK88_RS05845 PF05031 Iron Transport-associated domain RK88_RS05845 PF00746 LPXTG cell wall anchor motif RK88_RS05845 PF04650 YSIRK type signal peptide RK88_RS05850 PF01783 Ribosomal L32p protein family RK88_RS05865 PF05636 HIGH Nucleotidyl Transferase RK88_RS05870 PF01467 Cytidylyltransferase-like RK88_RS05885 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) RK88_RS05890 PF03009 Glycerophosphoryl diester phosphodiesterase family RK88_RS05895 PF06133 Control of competence regulator ComK, YlbF/YmcA RK88_RS05900 PF00188 Cysteine-rich secretory protein family RK88_RS05900 PF14504 CAP-associated N-terminal RK88_RS05915 PF01040 UbiA prenyltransferase family RK88_RS05920 PF02628 Cytochrome oxidase assembly protein RK88_RS05925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK88_RS05925 PF00364 Biotin-requiring enzyme RK88_RS05925 PF02785 Biotin carboxylase C-terminal domain RK88_RS05925 PF00682 HMGL-like RK88_RS05925 PF02436 Conserved carboxylase domain RK88_RS05925 PF00289 Biotin carboxylase, N-terminal domain RK88_RS05930 PF01098 Cell cycle protein RK88_RS05935 PF07408 Protein of unknown function (DUF1507) RK88_RS05960 PF00459 Inositol monophosphatase family RK88_RS05965 PF06335 Protein of unknown function (DUF1054) RK88_RS05970 PF01566 Natural resistance-associated macrophage protein RK88_RS05985 PF13416 Bacterial extracellular solute-binding protein RK88_RS05990 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS05995 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS06000 PF08402 TOBE domain RK88_RS06000 PF00005 ABC transporter RK88_RS06010 PF05256 Uncharacterised protein family (UPF0223) RK88_RS06015 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS06015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK88_RS06020 PF00364 Biotin-requiring enzyme RK88_RS06020 PF02817 e3 binding domain RK88_RS06020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK88_RS06025 PF02779 Transketolase, pyrimidine binding domain RK88_RS06025 PF02780 Transketolase, C-terminal domain RK88_RS06030 PF00676 Dehydrogenase E1 component RK88_RS06040 PF01327 Polypeptide deformylase RK88_RS06055 PF00753 Metallo-beta-lactamase superfamily RK88_RS06055 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RK88_RS06055 PF17770 Ribonuclease J C-terminal domain RK88_RS06065 PF02254 TrkA-N domain RK88_RS06065 PF02080 TrkA-C domain RK88_RS06070 PF02322 Cytochrome bd terminal oxidase subunit II RK88_RS06075 PF01654 Cytochrome bd terminal oxidase subunit I RK88_RS06085 PF05524 PEP-utilising enzyme, N-terminal RK88_RS06085 PF00391 PEP-utilising enzyme, mobile domain RK88_RS06085 PF02896 PEP-utilising enzyme, TIM barrel domain RK88_RS06090 PF00381 PTS HPr component phosphorylation site RK88_RS06100 PF10672 S-adenosylmethionine-dependent methyltransferase RK88_RS06100 PF17785 PUA-like domain RK88_RS06120 PF09819 ABC-type cobalt transport system, permease component RK88_RS06125 PF00005 ABC transporter RK88_RS06130 PF02361 Cobalt transport protein RK88_RS06140 PF02844 Phosphoribosylglycinamide synthetase, N domain RK88_RS06140 PF02843 Phosphoribosylglycinamide synthetase, C domain RK88_RS06140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RK88_RS06145 PF02142 MGS-like domain RK88_RS06145 PF01808 AICARFT/IMPCHase bienzyme RK88_RS06150 PF00551 Formyl transferase RK88_RS06155 PF02769 AIR synthase related protein, C-terminal domain RK88_RS06155 PF00586 AIR synthase related protein, N-terminal domain RK88_RS06160 PF13537 Glutamine amidotransferase domain RK88_RS06160 PF00156 Phosphoribosyl transferase domain RK88_RS06165 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RK88_RS06165 PF02769 AIR synthase related protein, C-terminal domain RK88_RS06165 PF00586 AIR synthase related protein, N-terminal domain RK88_RS06175 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RK88_RS06180 PF01259 SAICAR synthetase RK88_RS06185 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RK88_RS06185 PF02222 ATP-grasp domain RK88_RS06190 PF00731 AIR carboxylase RK88_RS06195 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RK88_RS06195 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RK88_RS06215 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RK88_RS06215 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RK88_RS06220 PF00115 Cytochrome C and Quinol oxidase polypeptide I RK88_RS06225 PF00510 Cytochrome c oxidase subunit III RK88_RS06230 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RK88_RS06235 PF00144 Beta-lactamase RK88_RS06240 PF03816 Cell envelope-related transcriptional attenuator domain RK88_RS06245 PF10804 Protein of unknown function (DUF2538) RK88_RS06250 PF13673 Acetyltransferase (GNAT) domain RK88_RS06255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK88_RS06255 PF13457 GW (Gly-Tryp) dipeptide domain RK88_RS06255 PF01510 N-acetylmuramoyl-L-alanine amidase RK88_RS06270 PF01757 Acyltransferase family RK88_RS06275 PF00155 Aminotransferase class I and II RK88_RS06290 PF05543 Staphopain peptidase C47 RK88_RS06290 PF14731 Staphopain proregion RK88_RS06295 PF09023 Staphostatin B RK88_RS06300 PF00378 Enoyl-CoA hydratase/isomerase RK88_RS06305 PF00561 alpha/beta hydrolase fold RK88_RS06310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS06310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK88_RS06310 PF16582 Middle domain of thiamine pyrophosphate RK88_RS06315 PF00425 chorismate binding enzyme RK88_RS06325 PF01040 UbiA prenyltransferase family RK88_RS06330 PF00583 Acetyltransferase (GNAT) family RK88_RS06335 PF05154 TM2 domain RK88_RS06345 PF01497 Periplasmic binding protein RK88_RS06355 PF00534 Glycosyl transferases group 1 RK88_RS06405 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) RK88_RS06410 PF10437 Bacterial lipoate protein ligase C-terminus RK88_RS06410 PF03099 Biotin/lipoate A/B protein ligase family RK88_RS06420 PF06338 ComK protein RK88_RS06435 PF02872 5'-nucleotidase, C-terminal domain RK88_RS06435 PF00149 Calcineurin-like phosphoesterase RK88_RS06440 PF02386 Cation transport protein RK88_RS06445 PF13180 PDZ domain RK88_RS06450 PF03741 Integral membrane protein TerC family RK88_RS06455 PF16658 Class II release factor RF3, C-terminal domain RK88_RS06455 PF03144 Elongation factor Tu domain 2 RK88_RS06455 PF00009 Elongation factor Tu GTP binding domain RK88_RS06465 PF08245 Mur ligase middle domain RK88_RS06465 PF02875 Mur ligase family, glutamate ligase domain RK88_RS06465 PF01225 Mur ligase family, catalytic domain RK88_RS06470 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RK88_RS06470 PF04101 Glycosyltransferase family 28 C-terminal domain RK88_RS06475 PF07690 Major Facilitator Superfamily RK88_RS06500 PF01235 Sodium:alanine symporter family RK88_RS06505 PF01594 AI-2E family transporter RK88_RS06515 PF00999 Sodium/hydrogen exchanger family RK88_RS06515 PF02254 TrkA-N domain RK88_RS06515 PF02080 TrkA-C domain RK88_RS06520 PF00571 CBS domain RK88_RS06520 PF01769 Divalent cation transporter RK88_RS06520 PF03448 MgtE intracellular N domain RK88_RS06525 PF00849 RNA pseudouridylate synthase RK88_RS06530 PF01513 ATP-NAD kinase RK88_RS06535 PF04607 Region found in RelA / SpoT proteins RK88_RS06550 PF01152 Bacterial-like globin RK88_RS06560 PF08439 Oligopeptidase F RK88_RS06560 PF01432 Peptidase family M3 RK88_RS06570 PF05389 Negative regulator of genetic competence (MecA) RK88_RS06575 PF03960 ArsC family RK88_RS06580 PF00579 tRNA synthetases class I (W and Y) RK88_RS06595 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS06595 PF12911 N-terminal TM domain of oligopeptide transport permease C RK88_RS06605 PF00005 ABC transporter RK88_RS06605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK88_RS06610 PF00005 ABC transporter RK88_RS06610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK88_RS06615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK88_RS06620 PF13936 Helix-turn-helix domain RK88_RS06620 PF00665 Integrase core domain RK88_RS06630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK88_RS06635 PF00005 ABC transporter RK88_RS06635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK88_RS06640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK88_RS06640 PF00005 ABC transporter RK88_RS06645 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS06645 PF12911 N-terminal TM domain of oligopeptide transport permease C RK88_RS06650 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS06660 PF00109 Beta-ketoacyl synthase, N-terminal domain RK88_RS06660 PF02801 Beta-ketoacyl synthase, C-terminal domain RK88_RS06665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RK88_RS06665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RK88_RS06675 PF03642 MAP domain RK88_RS06680 PF01161 Phosphatidylethanolamine-binding protein RK88_RS06695 PF00682 HMGL-like RK88_RS06695 PF08502 LeuA allosteric (dimerisation) domain RK88_RS06705 PF02861 Clp amino terminal domain, pathogenicity island component RK88_RS06705 PF07724 AAA domain (Cdc48 subfamily) RK88_RS06705 PF17871 AAA lid domain RK88_RS06705 PF00004 ATPase family associated with various cellular activities (AAA) RK88_RS06705 PF10431 C-terminal, D2-small domain, of ClpB protein RK88_RS06710 PF01757 Acyltransferase family RK88_RS06715 PF01883 Iron-sulfur cluster assembly protein RK88_RS06725 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS06725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK88_RS06735 PF07457 Protein of unknown function (DUF1516) RK88_RS06740 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK88_RS06745 PF13361 UvrD-like helicase C-terminal domain RK88_RS06745 PF00580 UvrD/REP helicase N-terminal domain RK88_RS06745 PF12705 PD-(D/E)XK nuclease superfamily RK88_RS06750 PF12705 PD-(D/E)XK nuclease superfamily RK88_RS06750 PF13361 UvrD-like helicase C-terminal domain RK88_RS06755 PF10502 Signal peptidase, peptidase S26 RK88_RS06760 PF10502 Signal peptidase, peptidase S26 RK88_RS06765 PF09335 SNARE associated Golgi protein RK88_RS06770 PF00342 Phosphoglucose isomerase RK88_RS06775 PF00764 Arginosuccinate synthase RK88_RS06780 PF14698 Argininosuccinate lyase C-terminal RK88_RS06780 PF00206 Lyase RK88_RS06785 PF03009 Glycerophosphoryl diester phosphodiesterase family RK88_RS06790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RK88_RS06790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RK88_RS06795 PF00202 Aminotransferase class-III RK88_RS06800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK88_RS06805 PF00575 S1 RNA binding domain RK88_RS06810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RK88_RS06820 PF13244 Domain of unknown function (DUF4040) RK88_RS06820 PF00361 Proton-conducting membrane transporter RK88_RS06820 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK88_RS06825 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RK88_RS06830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RK88_RS06835 PF00361 Proton-conducting membrane transporter RK88_RS06840 PF01899 Na+/H+ ion antiporter subunit RK88_RS06845 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RK88_RS06850 PF03334 Na+/H+ antiporter subunit RK88_RS06860 PF03061 Thioesterase superfamily RK88_RS06865 PF03553 Na+/H+ antiporter family RK88_RS06865 PF13726 Na+-H+ antiporter family RK88_RS06870 PF00883 Cytosol aminopeptidase family, catalytic domain RK88_RS06870 PF02789 Cytosol aminopeptidase family, N-terminal domain RK88_RS06875 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS06880 PF01521 Iron-sulphur cluster biosynthesis RK88_RS06885 PF07293 Protein of unknown function (DUF1450) RK88_RS06890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS06895 PF07315 Protein of unknown function (DUF1462) RK88_RS06900 PF01106 NifU-like domain RK88_RS06905 PF04914 DltD protein RK88_RS06910 PF00550 Phosphopantetheine attachment site RK88_RS06915 PF03062 MBOAT, membrane-bound O-acyltransferase family RK88_RS06920 PF13193 AMP-binding enzyme C-terminal domain RK88_RS06920 PF00501 AMP-binding enzyme RK88_RS06935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS06935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS06940 PF13344 Haloacid dehalogenase-like hydrolase RK88_RS06945 PF01934 Protein of unknown function DUF86 RK88_RS06955 PF06265 Protein of unknown function (DUF1027) RK88_RS06960 PF04055 Radical SAM superfamily RK88_RS06960 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RK88_RS06970 PF01925 Sulfite exporter TauE/SafE RK88_RS06975 PF01904 Protein of unknown function DUF72 RK88_RS06980 PF03060 Nitronate monooxygenase RK88_RS06985 PF00571 CBS domain RK88_RS06985 PF03471 Transporter associated domain RK88_RS06985 PF01595 Cyclin M transmembrane N-terminal domain RK88_RS07000 PF01458 Uncharacterized protein family (UPF0051) RK88_RS07005 PF01592 NifU-like N terminal domain RK88_RS07010 PF00266 Aminotransferase class-V RK88_RS07015 PF01458 Uncharacterized protein family (UPF0051) RK88_RS07020 PF00005 ABC transporter RK88_RS07030 PF05532 CsbD-like RK88_RS07035 PF03180 NLPA lipoprotein RK88_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS07045 PF00005 ABC transporter RK88_RS07045 PF09383 NIL domain RK88_RS07055 PF01751 Toprim domain RK88_RS07060 PF09234 Domain of unknown function (DUF1963) RK88_RS07070 PF01597 Glycine cleavage H-protein RK88_RS07075 PF03960 ArsC family RK88_RS07080 PF00085 Thioredoxin RK88_RS07090 PF01487 Type I 3-dehydroquinase RK88_RS07095 PF02566 OsmC-like protein RK88_RS07105 PF01810 LysE type translocator RK88_RS07110 PF00300 Histidine phosphatase superfamily (branch 1) RK88_RS07150 PF00313 'Cold-shock' DNA-binding domain RK88_RS07155 PF00565 Staphylococcal nuclease homologue RK88_RS07175 PF04650 YSIRK type signal peptide RK88_RS07175 PF17961 Bacterial Ig domain RK88_RS07175 PF00746 LPXTG cell wall anchor motif RK88_RS07175 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS07210 PF01668 SmpB protein RK88_RS07215 PF00575 S1 RNA binding domain RK88_RS07215 PF00773 RNB domain RK88_RS07215 PF08206 Ribonuclease B OB domain RK88_RS07215 PF17876 Cold shock domain RK88_RS07220 PF12146 Serine aminopeptidase, S33 RK88_RS07225 PF03840 Preprotein translocase SecG subunit RK88_RS07235 PF00113 Enolase, C-terminal TIM barrel domain RK88_RS07235 PF03952 Enolase, N-terminal domain RK88_RS07240 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RK88_RS07240 PF01676 Metalloenzyme superfamily RK88_RS07245 PF00121 Triosephosphate isomerase RK88_RS07250 PF00162 Phosphoglycerate kinase RK88_RS07255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK88_RS07255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK88_RS07260 PF04198 Putative sugar-binding domain RK88_RS07270 PF01370 NAD dependent epimerase/dehydratase family RK88_RS07270 PF08338 Domain of unknown function (DUF1731) RK88_RS07275 PF03949 Malic enzyme, NAD binding domain RK88_RS07275 PF00390 Malic enzyme, N-terminal domain RK88_RS07280 PF00574 Clp protease RK88_RS07290 PF02650 WhiA C-terminal HTH domain RK88_RS07290 PF10298 WhiA N-terminal LAGLIDADG-like domain RK88_RS07290 PF14527 WhiA LAGLIDADG-like domain RK88_RS07295 PF01933 Uncharacterised protein family UPF0052 RK88_RS07300 PF03668 P-loop ATPase protein family RK88_RS07310 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS07320 PF14602 Hexapeptide repeat of succinyl-transferase RK88_RS07325 PF01790 Prolipoprotein diacylglyceryl transferase RK88_RS07330 PF02603 HPr Serine kinase N terminus RK88_RS07330 PF07475 HPr Serine kinase C-terminal domain RK88_RS07340 PF00005 ABC transporter RK88_RS07340 PF17755 UvrA DNA-binding domain RK88_RS07340 PF17760 UvrA interaction domain RK88_RS07345 PF12344 Ultra-violet resistance protein B RK88_RS07345 PF00271 Helicase conserved C-terminal domain RK88_RS07345 PF04851 Type III restriction enzyme, res subunit RK88_RS07345 PF17757 UvrB interaction domain RK88_RS07345 PF02151 UvrB/uvrC motif RK88_RS07360 PF05257 CHAP domain RK88_RS07360 PF01476 LysM domain RK88_RS07375 PF01043 SecA preprotein cross-linking domain RK88_RS07375 PF07516 SecA Wing and Scaffold domain RK88_RS07375 PF07517 SecA DEAD-like domain RK88_RS07375 PF02810 SEC-C motif RK88_RS07380 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RK88_RS07380 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RK88_RS07390 PF04851 Type III restriction enzyme, res subunit RK88_RS07390 PF00271 Helicase conserved C-terminal domain RK88_RS07395 PF02645 Uncharacterised protein, DegV family COG1307 RK88_RS07400 PF09186 Domain of unknown function (DUF1949) RK88_RS07400 PF01205 Uncharacterized protein family UPF0029 RK88_RS07405 PF00953 Glycosyl transferase family 4 RK88_RS07410 PF07694 5TMR of 5TMR-LYT RK88_RS07410 PF00990 Diguanylate cyclase, GGDEF domain RK88_RS07425 PF07687 Peptidase dimerisation domain RK88_RS07425 PF01546 Peptidase family M20/M25/M40 RK88_RS07430 PF02595 Glycerate kinase family RK88_RS07450 PF01565 FAD binding domain RK88_RS07450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RK88_RS07460 PF01497 Periplasmic binding protein RK88_RS07465 PF00005 ABC transporter RK88_RS07470 PF01032 FecCD transport family RK88_RS07475 PF01032 FecCD transport family RK88_RS07480 PF00268 Ribonucleotide reductase, small chain RK88_RS07485 PF08343 Ribonucleotide reductase N-terminal RK88_RS07485 PF02867 Ribonucleotide reductase, barrel domain RK88_RS07485 PF00317 Ribonucleotide reductase, all-alpha domain RK88_RS07490 PF07972 NrdI Flavodoxin like RK88_RS07505 PF14489 QueF-like protein RK88_RS07515 PF00854 POT family RK88_RS07525 PF00781 Diacylglycerol kinase catalytic domain RK88_RS07530 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RK88_RS07535 PF00155 Aminotransferase class I and II RK88_RS07540 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS07545 PF00005 ABC transporter RK88_RS07545 PF00571 CBS domain RK88_RS07550 PF00270 DEAD/DEAH box helicase RK88_RS07550 PF00271 Helicase conserved C-terminal domain RK88_RS07550 PF00570 HRDC domain RK88_RS07550 PF16124 RecQ zinc-binding RK88_RS07550 PF09382 RQC domain RK88_RS07555 PF00005 ABC transporter RK88_RS07555 PF16326 ABC transporter C-terminal domain RK88_RS07555 PF12848 ABC transporter RK88_RS07560 PF00884 Sulfatase RK88_RS07585 PF00425 chorismate binding enzyme RK88_RS07585 PF04715 Anthranilate synthase component I, N terminal region RK88_RS07590 PF00117 Glutamine amidotransferase class-I RK88_RS07590 PF00591 Glycosyl transferase family, a/b domain RK88_RS07590 PF02885 Glycosyl transferase family, helical bundle domain RK88_RS07595 PF06508 Queuosine biosynthesis protein QueC RK88_RS07600 PF01242 6-pyruvoyl tetrahydropterin synthase RK88_RS07605 PF04055 Radical SAM superfamily RK88_RS07625 PF00486 Transcriptional regulatory protein, C terminal RK88_RS07625 PF00072 Response regulator receiver domain RK88_RS07630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS07630 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS07635 PF00535 Glycosyl transferase family 2 RK88_RS07640 PF00248 Aldo/keto reductase family RK88_RS07645 PF01595 Cyclin M transmembrane N-terminal domain RK88_RS07645 PF03471 Transporter associated domain RK88_RS07645 PF00571 CBS domain RK88_RS07650 PF01979 Amidohydrolase family RK88_RS07655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS07655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS07660 PF00294 pfkB family carbohydrate kinase RK88_RS07665 PF00455 DeoR C terminal sensor domain RK88_RS07665 PF08220 DeoR-like helix-turn-helix domain RK88_RS07670 PF04073 Aminoacyl-tRNA editing domain RK88_RS07680 PF07690 Major Facilitator Superfamily RK88_RS07705 PF00939 Sodium:sulfate symporter transmembrane region RK88_RS07715 PF00248 Aldo/keto reductase family RK88_RS07720 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK88_RS07720 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK88_RS07725 PF01047 MarR family RK88_RS07730 PF00664 ABC transporter transmembrane region RK88_RS07730 PF00005 ABC transporter RK88_RS07735 PF00664 ABC transporter transmembrane region RK88_RS07735 PF00005 ABC transporter RK88_RS07740 PF02673 Bacitracin resistance protein BacA RK88_RS07750 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RK88_RS07755 PF03641 Possible lysine decarboxylase RK88_RS07760 PF13302 Acetyltransferase (GNAT) domain RK88_RS07790 PF13610 DDE domain RK88_RS07800 PF01022 Bacterial regulatory protein, arsR family RK88_RS07805 PF00403 Heavy-metal-associated domain RK88_RS07815 PF07731 Multicopper oxidase RK88_RS07815 PF07732 Multicopper oxidase RK88_RS07825 PF02796 Helix-turn-helix domain of resolvase RK88_RS07825 PF00239 Resolvase, N terminal domain RK88_RS07830 PF03601 Conserved hypothetical protein 698 RK88_RS07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK88_RS07835 PF03466 LysR substrate binding domain RK88_RS07875 PF01076 Plasmid recombination enzyme RK88_RS07880 PF01076 Plasmid recombination enzyme RK88_RS07885 PF01076 Plasmid recombination enzyme RK88_RS07895 PF12704 MacB-like periplasmic core domain RK88_RS07895 PF00005 ABC transporter RK88_RS07895 PF02687 FtsX-like permease family RK88_RS07915 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK88_RS07920 PF02040 Arsenical pump membrane protein RK88_RS07925 PF01022 Bacterial regulatory protein, arsR family RK88_RS07930 PF02796 Helix-turn-helix domain of resolvase RK88_RS07930 PF00239 Resolvase, N terminal domain RK88_RS07940 PF13610 DDE domain RK88_RS07950 PF04306 Protein of unknown function (DUF456) RK88_RS07955 PF07690 Major Facilitator Superfamily RK88_RS07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK88_RS07960 PF03466 LysR substrate binding domain RK88_RS07980 PF01709 Transcriptional regulator RK88_RS08005 PF01476 LysM domain RK88_RS08005 PF05257 CHAP domain RK88_RS08010 PF01384 Phosphate transporter family RK88_RS08015 PF01865 Protein of unknown function DUF47 RK88_RS08020 PF02687 FtsX-like permease family RK88_RS08025 PF00005 ABC transporter RK88_RS08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS08035 PF00072 Response regulator receiver domain RK88_RS08035 PF00486 Transcriptional regulatory protein, C terminal RK88_RS08040 PF01370 NAD dependent epimerase/dehydratase family RK88_RS08080 PF02734 DAK2 domain RK88_RS08085 PF02733 Dak1 domain RK88_RS08090 PF01032 FecCD transport family RK88_RS08095 PF01032 FecCD transport family RK88_RS08100 PF00005 ABC transporter RK88_RS08105 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RK88_RS08105 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RK88_RS08115 PF01773 Na+ dependent nucleoside transporter N-terminus RK88_RS08115 PF07662 Na+ dependent nucleoside transporter C-terminus RK88_RS08120 PF00664 ABC transporter transmembrane region RK88_RS08120 PF00005 ABC transporter RK88_RS08125 PF07943 Penicillin-binding protein 5, C-terminal domain RK88_RS08125 PF00768 D-alanyl-D-alanine carboxypeptidase RK88_RS08130 PF01467 Cytidylyltransferase-like RK88_RS08135 PF00535 Glycosyl transferase family 2 RK88_RS08140 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK88_RS08145 PF01061 ABC-2 type transporter RK88_RS08150 PF00005 ABC transporter RK88_RS08155 PF03808 Glycosyl transferase WecB/TagA/CpsF family RK88_RS08165 PF02742 Iron dependent repressor, metal binding and dimerisation domain RK88_RS08165 PF01325 Iron dependent repressor, N-terminal DNA binding domain RK88_RS08165 PF18357 Diphteria toxin repressor SH3 domain RK88_RS08170 PF00005 ABC transporter RK88_RS08175 PF00950 ABC 3 transport family RK88_RS08180 PF01297 Zinc-uptake complex component A periplasmic RK88_RS08190 PF07690 Major Facilitator Superfamily RK88_RS08195 PF00999 Sodium/hydrogen exchanger family RK88_RS08200 PF03334 Na+/H+ antiporter subunit RK88_RS08205 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RK88_RS08210 PF01899 Na+/H+ ion antiporter subunit RK88_RS08215 PF00361 Proton-conducting membrane transporter RK88_RS08220 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RK88_RS08225 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RK88_RS08230 PF00361 Proton-conducting membrane transporter RK88_RS08230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK88_RS08230 PF13244 Domain of unknown function (DUF4040) RK88_RS08235 PF00589 Phage integrase family RK88_RS08235 PF02899 Phage integrase, N-terminal SAM-like domain RK88_RS08260 PF12697 Alpha/beta hydrolase family RK88_RS08275 PF00561 alpha/beta hydrolase fold RK88_RS08280 PF13419 Haloacid dehalogenase-like hydrolase RK88_RS08285 PF01032 FecCD transport family RK88_RS08290 PF01497 Periplasmic binding protein RK88_RS08300 PF03485 Arginyl tRNA synthetase N terminal domain RK88_RS08300 PF05746 DALR anticodon binding domain RK88_RS08300 PF00750 tRNA synthetases class I (R) RK88_RS08315 PF00107 Zinc-binding dehydrogenase RK88_RS08315 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS08320 PF08741 YwhD family RK88_RS08325 PF01966 HD domain RK88_RS08335 PF03358 NADPH-dependent FMN reductase RK88_RS08340 PF00248 Aldo/keto reductase family RK88_RS08380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS08380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK88_RS08385 PF07293 Protein of unknown function (DUF1450) RK88_RS08390 PF08544 GHMP kinases C terminal RK88_RS08390 PF00288 GHMP kinases N terminal domain RK88_RS08400 PF08544 GHMP kinases C terminal RK88_RS08400 PF00288 GHMP kinases N terminal domain RK88_RS08405 PF03099 Biotin/lipoate A/B protein ligase family RK88_RS08410 PF01515 Phosphate acetyl/butaryl transferase RK88_RS08440 PF04241 Protein of unknown function (DUF423) RK88_RS08450 PF03167 Uracil DNA glycosylase superfamily RK88_RS08455 PF08543 Phosphomethylpyrimidine kinase RK88_RS08460 PF17412 Family of unknown function RK88_RS08475 PF02803 Thiolase, C-terminal domain RK88_RS08475 PF00108 Thiolase, N-terminal domain RK88_RS08480 PF00501 AMP-binding enzyme RK88_RS08480 PF13193 AMP-binding enzyme C-terminal domain RK88_RS08490 PF07690 Major Facilitator Superfamily RK88_RS08500 PF01380 SIS domain RK88_RS08505 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK88_RS08510 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RK88_RS08520 PF02585 GlcNAc-PI de-N-acetylase RK88_RS08525 PF02649 Type I GTP cyclohydrolase folE2 RK88_RS08535 PF00534 Glycosyl transferases group 1 RK88_RS08540 PF17210 SdrD B-like domain RK88_RS08540 PF17961 Bacterial Ig domain RK88_RS08540 PF00746 LPXTG cell wall anchor motif RK88_RS08540 PF04650 YSIRK type signal peptide RK88_RS08540 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS08545 PF17961 Bacterial Ig domain RK88_RS08545 PF04650 YSIRK type signal peptide RK88_RS08545 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS08545 PF17210 SdrD B-like domain RK88_RS08545 PF00746 LPXTG cell wall anchor motif RK88_RS08550 PF04650 YSIRK type signal peptide RK88_RS08550 PF00746 LPXTG cell wall anchor motif RK88_RS08550 PF17961 Bacterial Ig domain RK88_RS08550 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS08550 PF17210 SdrD B-like domain RK88_RS08560 PF03358 NADPH-dependent FMN reductase RK88_RS08570 PF14437 MafB19-like deaminase RK88_RS08575 PF01712 Deoxynucleoside kinase RK88_RS08580 PF01712 Deoxynucleoside kinase RK88_RS08590 PF01063 Amino-transferase class IV RK88_RS08595 PF00665 Integrase core domain RK88_RS08595 PF13936 Helix-turn-helix domain RK88_RS08600 PF01370 NAD dependent epimerase/dehydratase family RK88_RS08605 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK88_RS08605 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK88_RS08610 PF01965 DJ-1/PfpI family RK88_RS08615 PF00155 Aminotransferase class I and II RK88_RS08620 PF07687 Peptidase dimerisation domain RK88_RS08620 PF01546 Peptidase family M20/M25/M40 RK88_RS08625 PF03143 Elongation factor Tu C-terminal domain RK88_RS08625 PF00009 Elongation factor Tu GTP binding domain RK88_RS08625 PF03144 Elongation factor Tu domain 2 RK88_RS08630 PF00679 Elongation factor G C-terminus RK88_RS08630 PF14492 Elongation Factor G, domain II RK88_RS08630 PF00009 Elongation factor Tu GTP binding domain RK88_RS08630 PF03144 Elongation factor Tu domain 2 RK88_RS08630 PF03764 Elongation factor G, domain IV RK88_RS08635 PF00177 Ribosomal protein S7p/S5e RK88_RS08640 PF00164 Ribosomal protein S12/S23 RK88_RS08645 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RK88_RS08650 PF00623 RNA polymerase Rpb1, domain 2 RK88_RS08650 PF04983 RNA polymerase Rpb1, domain 3 RK88_RS08650 PF04997 RNA polymerase Rpb1, domain 1 RK88_RS08650 PF05000 RNA polymerase Rpb1, domain 4 RK88_RS08650 PF04998 RNA polymerase Rpb1, domain 5 RK88_RS08655 PF04561 RNA polymerase Rpb2, domain 2 RK88_RS08655 PF04560 RNA polymerase Rpb2, domain 7 RK88_RS08655 PF04565 RNA polymerase Rpb2, domain 3 RK88_RS08655 PF04563 RNA polymerase beta subunit RK88_RS08655 PF10385 RNA polymerase beta subunit external 1 domain RK88_RS08655 PF00562 RNA polymerase Rpb2, domain 6 RK88_RS08660 PF05175 Methyltransferase small domain RK88_RS08665 PF16320 Ribosomal protein L7/L12 dimerisation domain RK88_RS08665 PF00542 Ribosomal protein L7/L12 C-terminal domain RK88_RS08670 PF00466 Ribosomal protein L10 RK88_RS08680 PF00687 Ribosomal protein L1p/L10e family RK88_RS08685 PF00298 Ribosomal protein L11, RNA binding domain RK88_RS08685 PF03946 Ribosomal protein L11, N-terminal domain RK88_RS08690 PF00467 KOW motif RK88_RS08690 PF02357 Transcription termination factor nusG RK88_RS08695 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RK88_RS08700 PF00471 Ribosomal protein L33 RK88_RS08715 PF00588 SpoU rRNA Methylase family RK88_RS08715 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK88_RS08720 PF00636 Ribonuclease III domain RK88_RS08725 PF09190 DALR domain RK88_RS08725 PF01406 tRNA synthetases class I (C) catalytic domain RK88_RS08730 PF00132 Bacterial transferase hexapeptide (six repeats) RK88_RS08740 PF00749 tRNA synthetases class I (E and Q), catalytic domain RK88_RS08750 PF18073 Rubredoxin metal binding domain RK88_RS08755 PF02861 Clp amino terminal domain, pathogenicity island component RK88_RS08755 PF00004 ATPase family associated with various cellular activities (AAA) RK88_RS08755 PF10431 C-terminal, D2-small domain, of ClpB protein RK88_RS08755 PF17871 AAA lid domain RK88_RS08755 PF07724 AAA domain (Cdc48 subfamily) RK88_RS08760 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain RK88_RS08765 PF02151 UvrB/uvrC motif RK88_RS08770 PF05848 CtsR N-terminal HTH domain RK88_RS08770 PF17727 CtsR C-terminal dimerization domain RK88_RS08775 PF07662 Na+ dependent nucleoside transporter C-terminus RK88_RS08775 PF01773 Na+ dependent nucleoside transporter N-terminus RK88_RS08785 PF01174 SNO glutamine amidotransferase family RK88_RS08790 PF01680 SOR/SNZ family RK88_RS08795 PF00155 Aminotransferase class I and II RK88_RS08795 PF00392 Bacterial regulatory proteins, gntR family RK88_RS08880 PF01336 OB-fold nucleic acid binding domain RK88_RS08880 PF00152 tRNA synthetases class II (D, K and N) RK88_RS08890 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RK88_RS08895 PF02152 Dihydroneopterin aldolase RK88_RS08900 PF00809 Pterin binding enzyme RK88_RS08905 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS08910 PF01430 Hsp33 protein RK88_RS08915 PF01434 Peptidase family M41 RK88_RS08915 PF17862 AAA+ lid domain RK88_RS08915 PF00004 ATPase family associated with various cellular activities (AAA) RK88_RS08915 PF06480 FtsH Extracellular RK88_RS08925 PF01171 PP-loop family RK88_RS08925 PF11734 TilS substrate C-terminal domain RK88_RS08930 PF00575 S1 RNA binding domain RK88_RS08940 PF01479 S4 domain RK88_RS08945 PF03819 MazG nucleotide pyrophosphohydrolase domain RK88_RS08945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK88_RS08950 PF01943 Polysaccharide biosynthesis protein RK88_RS08950 PF14667 Polysaccharide biosynthesis C-terminal domain RK88_RS08955 PF00270 DEAD/DEAH box helicase RK88_RS08955 PF17757 UvrB interaction domain RK88_RS08955 PF00271 Helicase conserved C-terminal domain RK88_RS08955 PF02559 CarD-like/TRCF domain RK88_RS08955 PF03461 TRCF domain RK88_RS08960 PF01195 Peptidyl-tRNA hydrolase RK88_RS08965 PF01386 Ribosomal L25p family RK88_RS08965 PF14693 Ribosomal protein TL5, C-terminal domain RK88_RS08975 PF14572 Phosphoribosyl synthetase-associated domain RK88_RS08975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RK88_RS08980 PF00132 Bacterial transferase hexapeptide (six repeats) RK88_RS08980 PF00483 Nucleotidyl transferase RK88_RS08990 PF04026 SpoVG RK88_RS08995 PF01042 Endoribonuclease L-PSP RK88_RS09000 PF09182 Bacterial purine repressor, N-terminal RK88_RS09000 PF00156 Phosphoribosyl transferase domain RK88_RS09005 PF00288 GHMP kinases N terminal domain RK88_RS09005 PF08544 GHMP kinases C terminal RK88_RS09010 PF06257 Biofilm formation stimulator VEG RK88_RS09015 PF00398 Ribosomal RNA adenine dimethylase RK88_RS09020 PF13331 Domain of unknown function (DUF4093) RK88_RS09020 PF01751 Toprim domain RK88_RS09025 PF01026 TatD related DNase RK88_RS09030 PF09334 tRNA synthetases class I (M) RK88_RS09030 PF01588 Putative tRNA binding domain RK88_RS09030 PF08264 Anticodon-binding domain of tRNA RK88_RS09035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK88_RS09040 PF01541 GIY-YIG catalytic domain RK88_RS09045 PF05175 Methyltransferase small domain RK88_RS09050 PF06156 Initiation control protein YabA RK88_RS09055 PF04468 PSP1 C-terminal conserved region RK88_RS09060 PF09115 DNA polymerase III, delta subunit, C terminal RK88_RS09065 PF06153 Cyclic-di-AMP receptor RK88_RS09070 PF02223 Thymidylate kinase RK88_RS09075 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK88_RS09075 PF01276 Orn/Lys/Arg decarboxylase, major domain RK88_RS09100 PF02132 RecR protein RK88_RS09100 PF13662 Toprim domain RK88_RS09105 PF02575 YbaB/EbfC DNA-binding family RK88_RS09110 PF12169 DNA polymerase III subunits gamma and tau domain III RK88_RS09130 PF00392 Bacterial regulatory proteins, gntR family RK88_RS09130 PF07702 UTRA domain RK88_RS09135 PF16657 Maltogenic Amylase, C-terminal domain RK88_RS09135 PF00128 Alpha amylase, catalytic domain RK88_RS09140 PF02378 Phosphotransferase system, EIIC RK88_RS09140 PF00367 phosphotransferase system, EIIB RK88_RS09150 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS09150 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RK88_RS09155 PF01493 GXGXG motif RK88_RS09155 PF01645 Conserved region in glutamate synthase RK88_RS09155 PF04898 Glutamate synthase central domain RK88_RS09155 PF00310 Glutamine amidotransferases class-II RK88_RS09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK88_RS09160 PF03466 LysR substrate binding domain RK88_RS09180 PF00293 NUDIX domain RK88_RS09190 PF05257 CHAP domain RK88_RS09190 PF01476 LysM domain RK88_RS09195 PF03180 NLPA lipoprotein RK88_RS09200 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS09205 PF00005 ABC transporter RK88_RS09205 PF09383 NIL domain RK88_RS09210 PF01053 Cys/Met metabolism PLP-dependent enzyme RK88_RS09215 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS09220 PF00209 Sodium:neurotransmitter symporter family RK88_RS09230 PF12146 Serine aminopeptidase, S33 RK88_RS09245 PF10057 Uncharacterized conserved protein (DUF2294) RK88_RS09250 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) RK88_RS09255 PF00361 Proton-conducting membrane transporter RK88_RS09255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK88_RS09275 PF17063 Phenol-soluble modulin alpha 4 peptide RK88_RS09280 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK88_RS09280 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK88_RS09305 PF04507 Csa1 family RK88_RS09310 PF04507 Csa1 family RK88_RS09315 PF04507 Csa1 family RK88_RS09320 PF04507 Csa1 family RK88_RS09330 PF04507 Csa1 family RK88_RS09335 PF04507 Csa1 family RK88_RS09350 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09350 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09360 PF12161 HsdM N-terminal domain RK88_RS09360 PF02384 N-6 DNA Methylase RK88_RS09370 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09370 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09375 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09375 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09380 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09380 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09385 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09385 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09390 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09390 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09395 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09395 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09400 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09400 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09400 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09400 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09405 PF09199 Staphylococcal superantigen-like OB-fold domain RK88_RS09405 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK88_RS09420 PF06993 Protein of unknown function (DUF1304) RK88_RS09435 PF01527 Transposase RK88_RS09455 PF00117 Glutamine amidotransferase class-I RK88_RS09455 PF00958 GMP synthase C terminal domain RK88_RS09460 PF00571 CBS domain RK88_RS09460 PF00478 IMP dehydrogenase / GMP reductase domain RK88_RS09465 PF00860 Permease family RK88_RS09475 PF11181 Heat induced stress protein YflT RK88_RS09500 PF00375 Sodium:dicarboxylate symporter family RK88_RS09505 PF00881 Nitroreductase family RK88_RS09510 PF10417 C-terminal domain of 1-Cys peroxiredoxin RK88_RS09510 PF00578 AhpC/TSA family RK88_RS09515 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS09515 PF13192 Thioredoxin domain RK88_RS09600 PF03592 Terminase small subunit RK88_RS09600 PF10668 Phage terminase small subunit RK88_RS09690 PF01084 Ribosomal protein S18 RK88_RS09695 PF00436 Single-strand binding protein family RK88_RS09700 PF01250 Ribosomal protein S6 RK88_RS09715 PF01926 50S ribosome-binding GTPase RK88_RS09715 PF06071 Protein of unknown function (DUF933) RK88_RS09720 PF06107 Bacterial protein of unknown function (DUF951) RK88_RS09725 PF00924 Mechanosensitive ion channel RK88_RS09730 PF17762 HTH domain found in ParB protein RK88_RS09730 PF02195 ParB-like nuclease domain RK88_RS09740 PF01053 Cys/Met metabolism PLP-dependent enzyme RK88_RS09745 PF01053 Cys/Met metabolism PLP-dependent enzyme RK88_RS09750 PF02219 Methylenetetrahydrofolate reductase RK88_RS09750 PF02574 Homocysteine S-methyltransferase RK88_RS09755 PF08267 Cobalamin-independent synthase, N-terminal domain RK88_RS09755 PF01717 Cobalamin-independent synthase, Catalytic domain RK88_RS09765 PF02803 Thiolase, C-terminal domain RK88_RS09765 PF00108 Thiolase, N-terminal domain RK88_RS09780 PF00005 ABC transporter RK88_RS09790 PF01381 Helix-turn-helix RK88_RS09800 PF02416 mttA/Hcf106 family RK88_RS09805 PF00902 Sec-independent protein translocase protein (TatC) RK88_RS09810 PF03239 Iron permease FTR1 family RK88_RS09815 PF04261 Dyp-type peroxidase family RK88_RS09820 PF09375 Imelysin RK88_RS09825 PF13302 Acetyltransferase (GNAT) domain RK88_RS09835 PF03601 Conserved hypothetical protein 698 RK88_RS09845 PF00296 Luciferase-like monooxygenase RK88_RS09850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK88_RS09855 PF07690 Major Facilitator Superfamily RK88_RS09865 PF01554 MatE RK88_RS09880 PF00874 PRD domain RK88_RS09880 PF03123 CAT RNA binding domain RK88_RS09885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS09895 PF03611 PTS system sugar-specific permease component RK88_RS09900 PF16363 GDP-mannose 4,6 dehydratase RK88_RS09905 PF10437 Bacterial lipoate protein ligase C-terminus RK88_RS09905 PF03099 Biotin/lipoate A/B protein ligase family RK88_RS09915 PF01661 Macro domain RK88_RS09920 PF01597 Glycine cleavage H-protein RK88_RS09925 PF00296 Luciferase-like monooxygenase RK88_RS09935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK88_RS09960 PF08460 Bacterial SH3 domain RK88_RS09960 PF01510 N-acetylmuramoyl-L-alanine amidase RK88_RS09960 PF05257 CHAP domain RK88_RS10005 PF01551 Peptidase family M23 RK88_RS10005 PF04225 Opacity-associated protein A LysM-like domain RK88_RS10060 PF04860 Phage portal protein RK88_RS10185 PF03796 DnaB-like helicase C terminal domain RK88_RS10185 PF00772 DnaB-like helicase N terminal domain RK88_RS10205 PF00436 Single-strand binding protein family RK88_RS10290 PF14659 Phage integrase, N-terminal SAM-like domain RK88_RS10290 PF00589 Phage integrase family RK88_RS10305 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RK88_RS10310 PF01380 SIS domain RK88_RS10310 PF01418 Helix-turn-helix domain, rpiR family RK88_RS10315 PF00480 ROK family RK88_RS10320 PF00701 Dihydrodipicolinate synthetase family RK88_RS10325 PF00474 Sodium:solute symporter family RK88_RS10330 PF01773 Na+ dependent nucleoside transporter N-terminus RK88_RS10330 PF07662 Na+ dependent nucleoside transporter C-terminus RK88_RS10335 PF04227 Indigoidine synthase A like protein RK88_RS10355 PF00005 ABC transporter RK88_RS10360 PF02687 FtsX-like permease family RK88_RS10370 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RK88_RS10380 PF05525 Branched-chain amino acid transport protein RK88_RS10410 PF04634 Protein of unknown function, DUF600 RK88_RS10415 PF04634 Protein of unknown function, DUF600 RK88_RS10460 PF01580 FtsK/SpoIIIE family RK88_RS10460 PF12538 DNA transporter RK88_RS10465 PF10140 WXG100 protein secretion system (Wss), protein YukC RK88_RS10470 PF08817 WXG100 protein secretion system (Wss), protein YukD RK88_RS10475 PF10661 WXG100 protein secretion system (Wss), protein EssA RK88_RS10485 PF06013 Proteins of 100 residues with WXG RK88_RS10490 PF05257 CHAP domain RK88_RS10490 PF01476 LysM domain RK88_RS10510 PF00005 ABC transporter RK88_RS10515 PF01551 Peptidase family M23 RK88_RS10520 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family RK88_RS10525 PF07690 Major Facilitator Superfamily RK88_RS10535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RK88_RS10535 PF00356 Bacterial regulatory proteins, lacI family RK88_RS10540 PF06800 Sugar transport protein RK88_RS10545 PF05025 RbsD / FucU transport protein family RK88_RS10550 PF00294 pfkB family carbohydrate kinase RK88_RS10560 PF13649 Methyltransferase domain RK88_RS10570 PF00232 Glycosyl hydrolase family 1 RK88_RS10575 PF02378 Phosphotransferase system, EIIC RK88_RS10575 PF00367 phosphotransferase system, EIIB RK88_RS10575 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK88_RS10585 PF00155 Aminotransferase class I and II RK88_RS10585 PF00392 Bacterial regulatory proteins, gntR family RK88_RS10590 PF00115 Cytochrome C and Quinol oxidase polypeptide I RK88_RS10595 PF04172 LrgB-like family RK88_RS10600 PF03788 LrgA family RK88_RS10605 PF00072 Response regulator receiver domain RK88_RS10605 PF04397 LytTr DNA-binding domain RK88_RS10610 PF07694 5TMR of 5TMR-LYT RK88_RS10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS10610 PF06580 Histidine kinase RK88_RS10615 PF01814 Hemerythrin HHE cation binding domain RK88_RS10615 PF04405 Domain of Unknown function (DUF542) RK88_RS10620 PF00535 Glycosyl transferase family 2 RK88_RS10620 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 RK88_RS10625 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK88_RS10630 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS10630 PF00107 Zinc-binding dehydrogenase RK88_RS10635 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RK88_RS10640 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK88_RS10650 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK88_RS10655 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS10655 PF00107 Zinc-binding dehydrogenase RK88_RS10660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RK88_RS10675 PF00107 Zinc-binding dehydrogenase RK88_RS10675 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS10680 PF03611 PTS system sugar-specific permease component RK88_RS10685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS10705 PF01156 Inosine-uridine preferring nucleoside hydrolase RK88_RS10710 PF02378 Phosphotransferase system, EIIC RK88_RS10710 PF00367 phosphotransferase system, EIIB RK88_RS10710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK88_RS10720 PF00056 lactate/malate dehydrogenase, NAD binding domain RK88_RS10720 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RK88_RS10730 PF00970 Oxidoreductase FAD-binding domain RK88_RS10730 PF00175 Oxidoreductase NAD-binding domain RK88_RS10730 PF00042 Globin RK88_RS10745 PF04343 Protein of unknown function, DUF488 RK88_RS10750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK88_RS10765 PF01144 Coenzyme A transferase RK88_RS10770 PF13193 AMP-binding enzyme C-terminal domain RK88_RS10770 PF00501 AMP-binding enzyme RK88_RS10775 PF02770 Acyl-CoA dehydrogenase, middle domain RK88_RS10775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK88_RS10775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK88_RS10780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RK88_RS10780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RK88_RS10785 PF00108 Thiolase, N-terminal domain RK88_RS10785 PF02803 Thiolase, C-terminal domain RK88_RS10795 PF08764 Staphylococcus aureus coagulase RK88_RS10795 PF04022 Staphylocoagulase repeat RK88_RS10810 PF04055 Radical SAM superfamily RK88_RS10815 PF01228 Glycine radical RK88_RS10815 PF02901 Pyruvate formate lyase-like RK88_RS10825 PF06580 Histidine kinase RK88_RS10830 PF12833 Helix-turn-helix domain RK88_RS10830 PF00072 Response regulator receiver domain RK88_RS10835 PF07690 Major Facilitator Superfamily RK88_RS10840 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family RK88_RS10850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK88_RS10850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK88_RS10855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK88_RS10855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK88_RS10860 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS10865 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS10875 PF00005 ABC transporter RK88_RS10875 PF17912 MalK OB fold domain RK88_RS10875 PF03459 TOBE domain RK88_RS10880 PF01551 Peptidase family M23 RK88_RS10880 PF08460 Bacterial SH3 domain RK88_RS10885 PF02525 Flavodoxin-like fold RK88_RS10900 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS10900 PF12911 N-terminal TM domain of oligopeptide transport permease C RK88_RS10910 PF00005 ABC transporter RK88_RS10910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK88_RS10920 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RK88_RS10920 PF18766 SWI2/SNF2 ATPase RK88_RS10920 PF12008 Type I restriction and modification enzyme - subunit R C terminal RK88_RS10930 PF01380 SIS domain RK88_RS10930 PF01418 Helix-turn-helix domain, rpiR family RK88_RS10935 PF02378 Phosphotransferase system, EIIC RK88_RS10935 PF00367 phosphotransferase system, EIIB RK88_RS10950 PF00367 phosphotransferase system, EIIB RK88_RS10950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK88_RS10950 PF02378 Phosphotransferase system, EIIC RK88_RS10960 PF00205 Thiamine pyrophosphate enzyme, central domain RK88_RS10960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK88_RS10960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS10965 PF00857 Isochorismatase family RK88_RS10970 PF05525 Branched-chain amino acid transport protein RK88_RS10975 PF00202 Aminotransferase class-III RK88_RS10980 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK88_RS10980 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK88_RS10985 PF01960 ArgJ family RK88_RS10990 PF00696 Amino acid kinase family RK88_RS11005 PF00975 Thioesterase domain RK88_RS11005 PF13193 AMP-binding enzyme C-terminal domain RK88_RS11005 PF00550 Phosphopantetheine attachment site RK88_RS11005 PF00668 Condensation domain RK88_RS11005 PF00501 AMP-binding enzyme RK88_RS11015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS11015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS11020 PF10057 Uncharacterized conserved protein (DUF2294) RK88_RS11025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK88_RS11025 PF02770 Acyl-CoA dehydrogenase, middle domain RK88_RS11025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK88_RS11030 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS11040 PF00005 ABC transporter RK88_RS11055 PF01545 Cation efflux family RK88_RS11055 PF16916 Dimerisation domain of Zinc Transporter RK88_RS11060 PF00171 Aldehyde dehydrogenase family RK88_RS11065 PF04304 Protein of unknown function (DUF454) RK88_RS11070 PF03992 Antibiotic biosynthesis monooxygenase RK88_RS11075 PF02350 UDP-N-acetylglucosamine 2-epimerase RK88_RS11080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RK88_RS11080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RK88_RS11080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RK88_RS11090 PF02397 Bacterial sugar transferase RK88_RS11105 PF14602 Hexapeptide repeat of succinyl-transferase RK88_RS11105 PF00132 Bacterial transferase hexapeptide (six repeats) RK88_RS11105 PF12464 Maltose acetyltransferase RK88_RS11120 PF02350 UDP-N-acetylglucosamine 2-epimerase RK88_RS11125 PF01370 NAD dependent epimerase/dehydratase family RK88_RS11130 PF02719 Polysaccharide biosynthesis protein RK88_RS11130 PF08485 Polysaccharide biosynthesis protein C-terminal RK88_RS11135 PF02719 Polysaccharide biosynthesis protein RK88_RS11145 PF13614 AAA domain RK88_RS11150 PF02706 Chain length determinant protein RK88_RS11155 PF00465 Iron-containing alcohol dehydrogenase RK88_RS11155 PF00171 Aldehyde dehydrogenase family RK88_RS11170 PF00149 Calcineurin-like phosphoesterase RK88_RS11170 PF02872 5'-nucleotidase, C-terminal domain RK88_RS11185 PF00005 ABC transporter RK88_RS11190 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS11195 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS11200 PF01676 Metalloenzyme superfamily RK88_RS11205 PF01791 DeoC/LacD family aldolase RK88_RS11210 PF07690 Major Facilitator Superfamily RK88_RS11215 PF01048 Phosphorylase superfamily RK88_RS11225 PF07702 UTRA domain RK88_RS11225 PF00392 Bacterial regulatory proteins, gntR family RK88_RS11235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK88_RS11235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK88_RS11250 PF00534 Glycosyl transferases group 1 RK88_RS11255 PF02397 Bacterial sugar transferase RK88_RS11260 PF01370 NAD dependent epimerase/dehydratase family RK88_RS11285 PF02195 ParB-like nuclease domain RK88_RS11290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK88_RS11290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK88_RS11295 PF03328 HpcH/HpaI aldolase/citrate lyase family RK88_RS11300 PF06276 Ferric iron reductase FhuF-like transporter RK88_RS11300 PF04183 IucA / IucC family RK88_RS11305 PF04183 IucA / IucC family RK88_RS11305 PF06276 Ferric iron reductase FhuF-like transporter RK88_RS11310 PF07690 Major Facilitator Superfamily RK88_RS11310 PF00083 Sugar (and other) transporter RK88_RS11315 PF04183 IucA / IucC family RK88_RS11315 PF06276 Ferric iron reductase FhuF-like transporter RK88_RS11320 PF02423 Ornithine cyclodeaminase/mu-crystallin family RK88_RS11325 PF00291 Pyridoxal-phosphate dependent enzyme RK88_RS11330 PF01497 Periplasmic binding protein RK88_RS11335 PF01032 FecCD transport family RK88_RS11340 PF01032 FecCD transport family RK88_RS11355 PF02216 B domain RK88_RS11355 PF00746 LPXTG cell wall anchor motif RK88_RS11355 PF01476 LysM domain RK88_RS11355 PF04650 YSIRK type signal peptide RK88_RS11355 PF03373 Octapeptide repeat RK88_RS11360 PF02652 L-lactate permease RK88_RS11370 PF06100 MCRA family RK88_RS11375 PF02690 Na+/Pi-cotransporter RK88_RS11380 PF07690 Major Facilitator Superfamily RK88_RS11385 PF07687 Peptidase dimerisation domain RK88_RS11385 PF01546 Peptidase family M20/M25/M40 RK88_RS11390 PF12833 Helix-turn-helix domain RK88_RS11395 PF04507 Csa1 family RK88_RS11400 PF00388 Phosphatidylinositol-specific phospholipase C, X domain RK88_RS11430 PF01207 Dihydrouridine synthase (Dus) RK88_RS11435 PF00583 Acetyltransferase (GNAT) family RK88_RS11445 PF00440 Bacterial regulatory proteins, tetR family RK88_RS11460 PF07690 Major Facilitator Superfamily RK88_RS11485 PF10117 McrBC 5-methylcytosine restriction system component RK88_RS11490 PF12102 Domain of unknown function (DUF3578) RK88_RS11490 PF07728 AAA domain (dynein-related subfamily) RK88_RS11500 PF00665 Integrase core domain RK88_RS11500 PF13936 Helix-turn-helix domain RK88_RS11515 PF13166 AAA domain RK88_RS11520 PF02590 Predicted SPOUT methyltransferase RK88_RS11525 PF02872 5'-nucleotidase, C-terminal domain RK88_RS11525 PF00149 Calcineurin-like phosphoesterase RK88_RS11530 PF00753 Metallo-beta-lactamase superfamily RK88_RS11540 PF07435 YycH protein RK88_RS11545 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS11545 PF13426 PAS domain RK88_RS11545 PF00672 HAMP domain RK88_RS11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS11550 PF00486 Transcriptional regulatory protein, C terminal RK88_RS11550 PF00072 Response regulator receiver domain RK88_RS11565 PF00709 Adenylosuccinate synthetase RK88_RS11575 PF00772 DnaB-like helicase N terminal domain RK88_RS11575 PF03796 DnaB-like helicase C terminal domain RK88_RS11580 PF03948 Ribosomal protein L9, C-terminal domain RK88_RS11580 PF01281 Ribosomal protein L9, N-terminal domain RK88_RS11585 PF01368 DHH family RK88_RS11585 PF02272 DHHA1 domain RK88_RS11595 PF00561 alpha/beta hydrolase fold RK88_RS11610 PF02403 Seryl-tRNA synthetase N-terminal domain RK88_RS11610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK88_RS11620 PF00221 Aromatic amino acid lyase RK88_RS11625 PF01256 Carbohydrate kinase RK88_RS11630 PF03989 DNA gyrase C-terminal domain, beta-propeller RK88_RS11630 PF00521 DNA gyrase/topoisomerase IV, subunit A RK88_RS11635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS11635 PF01751 Toprim domain RK88_RS11635 PF00986 DNA gyrase B subunit, carboxyl terminus RK88_RS11635 PF00204 DNA gyrase B RK88_RS11640 PF02463 RecF/RecN/SMC N terminal domain RK88_RS11650 PF02768 DNA polymerase III beta subunit, C-terminal domain RK88_RS11650 PF02767 DNA polymerase III beta subunit, central domain RK88_RS11650 PF00712 DNA polymerase III beta subunit, N-terminal domain RK88_RS11655 PF11638 DnaA N-terminal domain RK88_RS11655 PF00308 Bacterial dnaA protein RK88_RS11655 PF08299 Bacterial dnaA protein helix-turn-helix RK88_RS11660 PF00468 Ribosomal protein L34 RK88_RS11665 PF00825 Ribonuclease P RK88_RS11670 PF12631 MnmE helical domain RK88_RS11670 PF01926 50S ribosome-binding GTPase RK88_RS11670 PF10396 GTP-binding protein TrmE N-terminus RK88_RS11675 PF13932 GidA associated domain RK88_RS11675 PF01134 Glucose inhibited division protein A RK88_RS11680 PF02527 rRNA small subunit methyltransferase G RK88_RS11685 PF02195 ParB-like nuclease domain RK88_RS11685 PF17762 HTH domain found in ParB protein RK88_RS11705 PF00313 'Cold-shock' DNA-binding domain RK88_RS11710 PF00082 Subtilase family RK88_RS11710 PF05922 Peptidase inhibitor I9 RK88_RS11735 PF02687 FtsX-like permease family RK88_RS11740 PF00005 ABC transporter RK88_RS11750 PF00797 N-acetyltransferase RK88_RS11755 PF03824 High-affinity nickel-transport protein RK88_RS11765 PF00892 EamA-like transporter family RK88_RS11770 PF00939 Sodium:sulfate symporter transmembrane region RK88_RS11775 PF17802 Prealbumin-like fold domain RK88_RS11775 PF05738 Cna protein B-type domain RK88_RS11775 PF05737 Collagen binding domain RK88_RS11785 PF01470 Pyroglutamyl peptidase RK88_RS11795 PF08450 SMP-30/Gluconolactonase/LRE-like region RK88_RS11800 PF04264 YceI-like domain RK88_RS11810 PF07155 ECF-type riboflavin transporter, S component RK88_RS11815 PF12558 ATP-binding cassette cobalt transporter RK88_RS11815 PF00005 ABC transporter RK88_RS11835 PF13393 Histidyl-tRNA synthetase RK88_RS11840 PF01634 ATP phosphoribosyltransferase RK88_RS11845 PF00815 Histidinol dehydrogenase RK88_RS11850 PF00155 Aminotransferase class I and II RK88_RS11855 PF00475 Imidazoleglycerol-phosphate dehydratase RK88_RS11860 PF00117 Glutamine amidotransferase class-I RK88_RS11865 PF00977 Histidine biosynthesis protein RK88_RS11870 PF00977 Histidine biosynthesis protein RK88_RS11875 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RK88_RS11875 PF01502 Phosphoribosyl-AMP cyclohydrolase RK88_RS11880 PF04650 YSIRK type signal peptide RK88_RS11890 PF01757 Acyltransferase family RK88_RS11895 PF01522 Polysaccharide deacetylase RK88_RS11905 PF00535 Glycosyl transferase family 2 RK88_RS11910 PF00440 Bacterial regulatory proteins, tetR family RK88_RS11910 PF18665 Tetracyclin repressor-like, C-terminal domain RK88_RS11920 PF13614 AAA domain RK88_RS11935 PF01641 SelR domain RK88_RS11935 PF01625 Peptide methionine sulfoxide reductase RK88_RS11940 PF01613 Flavin reductase like domain RK88_RS11965 PF01613 Flavin reductase like domain RK88_RS11970 PF00746 LPXTG cell wall anchor motif RK88_RS11975 PF00344 SecY translocase RK88_RS11980 PF16993 Accessory Sec system protein Asp1 RK88_RS11985 PF16993 Accessory Sec system protein Asp1 RK88_RS11990 PF16929 Accessory Sec system GspB-transporter RK88_RS11995 PF15432 Accessory Sec secretory system ASP3 RK88_RS12000 PF01043 SecA preprotein cross-linking domain RK88_RS12000 PF07517 SecA DEAD-like domain RK88_RS12000 PF07516 SecA Wing and Scaffold domain RK88_RS12005 PF00534 Glycosyl transferases group 1 RK88_RS12015 PF01468 GA module RK88_RS12020 PF00857 Isochorismatase family RK88_RS12020 PF00550 Phosphopantetheine attachment site RK88_RS12025 PF05257 CHAP domain RK88_RS12025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK88_RS12030 PF01061 ABC-2 type transporter RK88_RS12035 PF01238 Phosphomannose isomerase type I RK88_RS12040 PF02378 Phosphotransferase system, EIIC RK88_RS12040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS12040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS12045 PF05043 Mga helix-turn-helix domain RK88_RS12045 PF08279 HTH domain RK88_RS12045 PF00874 PRD domain RK88_RS12045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS12060 PF01447 Thermolysin metallopeptidase, catalytic domain RK88_RS12060 PF03413 Peptidase propeptide and YPEB domain RK88_RS12060 PF07504 Fungalysin/Thermolysin Propeptide Motif RK88_RS12060 PF02868 Thermolysin metallopeptidase, alpha-helical domain RK88_RS12065 PF02863 Arginine repressor, C-terminal domain RK88_RS12065 PF01316 Arginine repressor, DNA binding domain RK88_RS12080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK88_RS12080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK88_RS12085 PF13520 Amino acid permease RK88_RS12090 PF00696 Amino acid kinase family RK88_RS12095 PF13545 Crp-like helix-turn-helix domain RK88_RS12095 PF00027 Cyclic nucleotide-binding domain RK88_RS12100 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS12100 PF00746 LPXTG cell wall anchor motif RK88_RS12100 PF17961 Bacterial Ig domain RK88_RS12100 PF04650 YSIRK type signal peptide RK88_RS12110 PF01047 MarR family RK88_RS12120 PF00245 Alkaline phosphatase RK88_RS12130 PF00072 Response regulator receiver domain RK88_RS12130 PF00486 Transcriptional regulatory protein, C terminal RK88_RS12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS12140 PF00005 ABC transporter RK88_RS12165 PF00255 Glutathione peroxidase RK88_RS12175 PF00258 Flavodoxin RK88_RS12175 PF00667 FAD binding domain RK88_RS12175 PF00175 Oxidoreductase NAD-binding domain RK88_RS12180 PF14824 Sirohaem biosynthesis protein central RK88_RS12190 PF03600 Citrate transporter RK88_RS12195 PF13597 Anaerobic ribonucleoside-triphosphate reductase RK88_RS12195 PF03477 ATP cone domain RK88_RS12215 PF02028 BCCT, betaine/carnitine/choline family transporter RK88_RS12230 PF00171 Aldehyde dehydrogenase family RK88_RS12235 PF05199 GMC oxidoreductase RK88_RS12235 PF00732 GMC oxidoreductase RK88_RS12250 PF00501 AMP-binding enzyme RK88_RS12250 PF13193 AMP-binding enzyme C-terminal domain RK88_RS12260 PF06039 Malate:quinone oxidoreductase (Mqo) RK88_RS12265 PF00274 Fructose-bisphosphate aldolase class-I RK88_RS12275 PF00202 Aminotransferase class-III RK88_RS12280 PF13520 Amino acid permease RK88_RS12290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RK88_RS12290 PF00056 lactate/malate dehydrogenase, NAD binding domain RK88_RS12295 PF03306 Alpha-acetolactate decarboxylase RK88_RS12305 PF02548 Ketopantoate hydroxymethyltransferase RK88_RS12310 PF02569 Pantoate-beta-alanine ligase RK88_RS12315 PF02261 Aspartate decarboxylase RK88_RS12340 PF02677 Epoxyqueuosine reductase QueH RK88_RS12350 PF01180 Dihydroorotate dehydrogenase RK88_RS12355 PF03881 Fructosamine kinase RK88_RS12385 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK88_RS12385 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK88_RS12390 PF00561 alpha/beta hydrolase fold RK88_RS12400 PF00106 short chain dehydrogenase RK88_RS12405 PF00440 Bacterial regulatory proteins, tetR family RK88_RS12425 PF05979 Bacterial protein of unknown function (DUF896) RK88_RS12450 PF01464 Transglycosylase SLT domain RK88_RS12455 PF01757 Acyltransferase family RK88_RS12470 PF01593 Flavin containing amine oxidoreductase RK88_RS12475 PF00535 Glycosyl transferase family 2 RK88_RS12485 PF01593 Flavin containing amine oxidoreductase RK88_RS12490 PF00155 Aminotransferase class I and II RK88_RS12495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS12495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS12500 PF00403 Heavy-metal-associated domain RK88_RS12505 PF00403 Heavy-metal-associated domain RK88_RS12515 PF00132 Bacterial transferase hexapeptide (six repeats) RK88_RS12515 PF14602 Hexapeptide repeat of succinyl-transferase RK88_RS12515 PF12464 Maltose acetyltransferase RK88_RS12520 PF00171 Aldehyde dehydrogenase family RK88_RS12535 PF03176 MMPL family RK88_RS12545 PF17910 FeoB cytosolic helical domain RK88_RS12545 PF02421 Ferrous iron transport protein B RK88_RS12545 PF07664 Ferrous iron transport protein B C terminus RK88_RS12545 PF07670 Nucleoside recognition RK88_RS12555 PF17871 AAA lid domain RK88_RS12555 PF00004 ATPase family associated with various cellular activities (AAA) RK88_RS12555 PF07724 AAA domain (Cdc48 subfamily) RK88_RS12555 PF10431 C-terminal, D2-small domain, of ClpB protein RK88_RS12560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RK88_RS12560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RK88_RS12565 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal RK88_RS12565 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal RK88_RS12570 PF00368 Hydroxymethylglutaryl-coenzyme A reductase RK88_RS12575 PF05257 CHAP domain RK88_RS12585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK88_RS12585 PF03466 LysR substrate binding domain RK88_RS12590 PF03788 LrgA family RK88_RS12595 PF04172 LrgB-like family RK88_RS12600 PF00205 Thiamine pyrophosphate enzyme, central domain RK88_RS12600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS12600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK88_RS12605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK88_RS12605 PF02378 Phosphotransferase system, EIIC RK88_RS12605 PF00367 phosphotransferase system, EIIB RK88_RS12620 PF00934 PE family RK88_RS12620 PF07859 alpha/beta hydrolase fold RK88_RS12625 PF00892 EamA-like transporter family RK88_RS12640 PF01842 ACT domain RK88_RS12640 PF03315 Serine dehydratase beta chain RK88_RS12645 PF03313 Serine dehydratase alpha chain RK88_RS12665 PF04203 Sortase domain RK88_RS12680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS12680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS12685 PF00881 Nitroreductase family RK88_RS12690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK88_RS12700 PF01047 MarR family RK88_RS12705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK88_RS12710 PF01738 Dienelactone hydrolase family RK88_RS12720 PF06874 Firmicute fructose-1,6-bisphosphatase RK88_RS12730 PF00005 ABC transporter RK88_RS12740 PF00155 Aminotransferase class I and II RK88_RS12740 PF00392 Bacterial regulatory proteins, gntR family RK88_RS12750 PF01810 LysE type translocator RK88_RS12755 PF09335 SNARE associated Golgi protein RK88_RS12760 PF07690 Major Facilitator Superfamily RK88_RS12770 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RK88_RS12775 PF04607 Region found in RelA / SpoT proteins RK88_RS12780 PF13411 MerR HTH family regulatory protein RK88_RS12785 PF00392 Bacterial regulatory proteins, gntR family RK88_RS12785 PF07729 FCD domain RK88_RS12790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK88_RS12790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK88_RS12795 PF02447 GntP family permease RK88_RS12810 PF00746 LPXTG cell wall anchor motif RK88_RS12810 PF04650 YSIRK type signal peptide RK88_RS12810 PF02986 Fibronectin binding repeat RK88_RS12810 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK88_RS12810 PF17961 Bacterial Ig domain RK88_RS12820 PF00483 Nucleotidyl transferase RK88_RS12835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK88_RS12835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK88_RS12835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK88_RS12835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK88_RS12840 PF00293 NUDIX domain RK88_RS12850 PF04507 Csa1 family RK88_RS12860 PF04507 Csa1 family RK88_RS12920 PF02627 Carboxymuconolactone decarboxylase family RK88_RS12925 PF03806 AbgT putative transporter family RK88_RS12935 PF12706 Beta-lactamase superfamily domain RK88_RS12950 PF10100 Staphylopine dehydrogenase RK88_RS12955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK88_RS12960 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS12965 PF12911 N-terminal TM domain of oligopeptide transport permease C RK88_RS12965 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS12970 PF00005 ABC transporter RK88_RS12975 PF00005 ABC transporter RK88_RS12980 PF07690 Major Facilitator Superfamily RK88_RS12990 PF01645 Conserved region in glutamate synthase RK88_RS12995 PF06998 Protein of unknown function (DUF1307) RK88_RS13000 PF05343 M42 glutamyl aminopeptidase RK88_RS13005 PF00005 ABC transporter RK88_RS13010 PF03649 Uncharacterised protein family (UPF0014) RK88_RS13015 PF07690 Major Facilitator Superfamily RK88_RS13020 PF00135 Carboxylesterase family RK88_RS13025 PF13520 Amino acid permease RK88_RS13030 PF08818 Domain of unknown function (DU1801) RK88_RS13045 PF00005 ABC transporter RK88_RS13045 PF00571 CBS domain RK88_RS13050 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS13055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RK88_RS13060 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS13065 PF07690 Major Facilitator Superfamily RK88_RS13070 PF08546 Ketopantoate reductase PanE/ApbA C terminal RK88_RS13070 PF02558 Ketopantoate reductase PanE/ApbA RK88_RS13080 PF00144 Beta-lactamase RK88_RS13090 PF13520 Amino acid permease RK88_RS13100 PF00999 Sodium/hydrogen exchanger family RK88_RS13105 PF00324 Amino acid permease RK88_RS13125 PF07690 Major Facilitator Superfamily RK88_RS13135 PF02595 Glycerate kinase family RK88_RS13155 PF04954 Siderophore-interacting protein RK88_RS13155 PF08021 Siderophore-interacting FAD-binding domain RK88_RS13155 PF00664 ABC transporter transmembrane region RK88_RS13155 PF00005 ABC transporter RK88_RS13160 PF00005 ABC transporter RK88_RS13160 PF00664 ABC transporter transmembrane region RK88_RS13180 PF00202 Aminotransferase class-III RK88_RS13185 PF06968 Biotin and Thiamin Synthesis associated domain RK88_RS13185 PF04055 Radical SAM superfamily RK88_RS13190 PF00155 Aminotransferase class I and II RK88_RS13195 PF03744 6-carboxyhexanoate--CoA ligase RK88_RS13205 PF07968 Leukocidin/Hemolysin toxin family RK88_RS13210 PF07968 Leukocidin/Hemolysin toxin family RK88_RS13215 PF07968 Leukocidin/Hemolysin toxin family RK88_RS13230 PF02216 B domain RK88_RS13230 PF11621 C3 binding domain 4 of IgG-bind protein SBI RK88_RS13240 PF16916 Dimerisation domain of Zinc Transporter RK88_RS13240 PF01545 Cation efflux family RK88_RS13245 PF00300 Histidine phosphatase superfamily (branch 1) RK88_RS13260 PF07690 Major Facilitator Superfamily RK88_RS13265 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK88_RS13270 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS13275 PF00005 ABC transporter RK88_RS13280 PF02388 FemAB family RK88_RS13305 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RK88_RS13310 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RK88_RS13310 PF01297 Zinc-uptake complex component A periplasmic RK88_RS13325 PF01226 Formate/nitrite transporter RK88_RS13330 PF00583 Acetyltransferase (GNAT) family RK88_RS13340 PF18267 Rubredoxin NAD+ reductase C-terminal domain RK88_RS13340 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS13340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RK88_RS13340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RK88_RS13340 PF04324 BFD-like [2Fe-2S] binding domain RK88_RS13345 PF00355 Rieske [2Fe-2S] domain RK88_RS13350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK88_RS13355 PF00384 Molybdopterin oxidoreductase RK88_RS13355 PF14710 Respiratory nitrate reductase alpha N-terminal RK88_RS13355 PF01568 Molydopterin dinucleotide binding domain RK88_RS13360 PF14711 Respiratory nitrate reductase beta C-terminal RK88_RS13360 PF13247 4Fe-4S dicluster domain RK88_RS13370 PF02665 Nitrate reductase gamma subunit RK88_RS13380 PF07730 Histidine kinase RK88_RS13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS13385 PF00196 Bacterial regulatory proteins, luxR family RK88_RS13385 PF00072 Response regulator receiver domain RK88_RS13400 PF07690 Major Facilitator Superfamily RK88_RS13410 PF01047 MarR family RK88_RS13420 PF00375 Sodium:dicarboxylate symporter family RK88_RS13435 PF16242 Pyridoxamine 5'-phosphate oxidase like RK88_RS13450 PF00367 phosphotransferase system, EIIB RK88_RS13450 PF02378 Phosphotransferase system, EIIC RK88_RS13485 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK88_RS13495 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS13495 PF00107 Zinc-binding dehydrogenase RK88_RS13500 PF13673 Acetyltransferase (GNAT) domain RK88_RS13510 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK88_RS13515 PF02652 L-lactate permease RK88_RS13520 PF06039 Malate:quinone oxidoreductase (Mqo) RK88_RS13530 PF00005 ABC transporter RK88_RS13545 PF04397 LytTr DNA-binding domain RK88_RS13550 PF00672 HAMP domain RK88_RS13550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK88_RS13550 PF00512 His Kinase A (phospho-acceptor) domain RK88_RS13555 PF00486 Transcriptional regulatory protein, C terminal RK88_RS13555 PF00072 Response regulator receiver domain RK88_RS13560 PF02687 FtsX-like permease family RK88_RS13565 PF00005 ABC transporter RK88_RS13575 PF12802 MarR family RK88_RS13595 PF07690 Major Facilitator Superfamily RK88_RS13615 PF07690 Major Facilitator Superfamily RK88_RS13625 PF07859 alpha/beta hydrolase fold RK88_RS13625 PF00934 PE family RK88_RS13640 PF01544 CorA-like Mg2+ transporter protein RK88_RS13645 PF01070 FMN-dependent dehydrogenase RK88_RS13650 PF03616 Sodium/glutamate symporter RK88_RS13660 PF02245 Methylpurine-DNA glycosylase (MPG) RK88_RS13670 PF00005 ABC transporter RK88_RS13670 PF13732 Domain of unknown function (DUF4162) RK88_RS13685 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RK88_RS13690 PF01263 Aldose 1-epimerase RK88_RS13695 PF03473 MOSC domain RK88_RS13695 PF03475 3-alpha domain RK88_RS13700 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RK88_RS13710 PF00491 Arginase family RK88_RS13715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK88_RS13720 PF03466 LysR substrate binding domain RK88_RS13720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK88_RS13725 PF17391 Urocanase N-terminal domain RK88_RS13725 PF17392 Urocanase C-terminal domain RK88_RS13725 PF01175 Urocanase Rossmann-like domain RK88_RS13730 PF01979 Amidohydrolase family RK88_RS13760 PF01380 SIS domain RK88_RS13760 PF01418 Helix-turn-helix domain, rpiR family RK88_RS13765 PF00367 phosphotransferase system, EIIB RK88_RS13765 PF02378 Phosphotransferase system, EIIC RK88_RS13780 PF13419 Haloacid dehalogenase-like hydrolase RK88_RS13800 PF00324 Amino acid permease RK88_RS13815 PF02517 CPBP intramembrane metalloprotease RK88_RS13830 PF03816 Cell envelope-related transcriptional attenuator domain RK88_RS13840 PF01568 Molydopterin dinucleotide binding domain RK88_RS13840 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RK88_RS13840 PF00384 Molybdopterin oxidoreductase RK88_RS13840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK88_RS13840 PF12838 4Fe-4S dicluster domain RK88_RS13855 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK88_RS13855 PF13457 GW (Gly-Tryp) dipeptide domain RK88_RS13865 PF01494 FAD binding domain RK88_RS13870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK88_RS13870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK88_RS13880 PF05257 CHAP domain RK88_RS13890 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain RK88_RS13890 PF02558 Ketopantoate reductase PanE/ApbA RK88_RS13895 PF03553 Na+/H+ antiporter family RK88_RS13905 PF05257 CHAP domain RK88_RS13935 PF01774 UreD urease accessory protein RK88_RS13940 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK88_RS13945 PF01730 UreF RK88_RS13950 PF02814 UreE urease accessory protein, N-terminal domain RK88_RS13950 PF05194 UreE urease accessory protein, C-terminal domain RK88_RS13955 PF00449 Urease alpha-subunit, N-terminal domain RK88_RS13955 PF01979 Amidohydrolase family RK88_RS13960 PF00699 Urease beta subunit RK88_RS13965 PF00547 Urease, gamma subunit RK88_RS13970 PF03253 Urea transporter RK88_RS13975 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RK88_RS13975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK88_RS13975 PF02770 Acyl-CoA dehydrogenase, middle domain RK88_RS13985 PF01156 Inosine-uridine preferring nucleoside hydrolase RK88_RS13990 PF02632 BioY family RK88_RS14000 PF02634 FdhD/NarQ family RK88_RS14010 PF00528 Binding-protein-dependent transport system inner membrane component RK88_RS14015 PF00005 ABC transporter RK88_RS14015 PF03459 TOBE domain RK88_RS14020 PF00899 ThiF family RK88_RS14025 PF00994 Probable molybdopterin binding domain RK88_RS14030 PF01967 MoaC family RK88_RS14035 PF00994 Probable molybdopterin binding domain RK88_RS14035 PF03453 MoeA N-terminal region (domain I and II) RK88_RS14035 PF03454 MoeA C-terminal region (domain IV) RK88_RS14040 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RK88_RS14045 PF02391 MoaE protein RK88_RS14050 PF02597 ThiS family RK88_RS14055 PF12804 MobA-like NTP transferase domain RK88_RS14060 PF04055 Radical SAM superfamily RK88_RS14060 PF06463 Molybdenum Cofactor Synthesis C RK88_RS14080 PF01047 MarR family RK88_RS14090 PF01047 MarR family RK88_RS14105 PF02388 FemAB family RK88_RS14110 PF00873 AcrB/AcrD/AcrF family RK88_RS14135 PF06800 Sugar transport protein RK88_RS14150 PF01751 Toprim domain RK88_RS14150 PF01131 DNA topoisomerase RK88_RS14155 PF00860 Permease family RK88_RS14165 PF00338 Ribosomal protein S10p/S20e RK88_RS14170 PF00297 Ribosomal protein L3 RK88_RS14175 PF00573 Ribosomal protein L4/L1 family RK88_RS14180 PF00276 Ribosomal protein L23 RK88_RS14185 PF00181 Ribosomal Proteins L2, RNA binding domain RK88_RS14185 PF03947 Ribosomal Proteins L2, C-terminal domain RK88_RS14190 PF00203 Ribosomal protein S19 RK88_RS14195 PF00237 Ribosomal protein L22p/L17e RK88_RS14200 PF00189 Ribosomal protein S3, C-terminal domain RK88_RS14200 PF07650 KH domain RK88_RS14205 PF00252 Ribosomal protein L16p/L10e RK88_RS14210 PF00831 Ribosomal L29 protein RK88_RS14215 PF00366 Ribosomal protein S17 RK88_RS14220 PF00238 Ribosomal protein L14p/L23e RK88_RS14225 PF00467 KOW motif RK88_RS14225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RK88_RS14230 PF00281 Ribosomal protein L5 RK88_RS14230 PF00673 ribosomal L5P family C-terminus RK88_RS14235 PF00253 Ribosomal protein S14p/S29e RK88_RS14240 PF00410 Ribosomal protein S8 RK88_RS14245 PF00347 Ribosomal protein L6 RK88_RS14250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RK88_RS14255 PF03719 Ribosomal protein S5, C-terminal domain RK88_RS14255 PF00333 Ribosomal protein S5, N-terminal domain RK88_RS14260 PF00327 Ribosomal protein L30p/L7e RK88_RS14265 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RK88_RS14270 PF00344 SecY translocase RK88_RS14275 PF05191 Adenylate kinase, active site lid RK88_RS14280 PF01176 Translation initiation factor 1A / IF-1 RK88_RS14285 PF00444 Ribosomal protein L36 RK88_RS14290 PF00416 Ribosomal protein S13/S18 RK88_RS14295 PF00411 Ribosomal protein S11 RK88_RS14300 PF01000 RNA polymerase Rpb3/RpoA insert domain RK88_RS14300 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RK88_RS14300 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RK88_RS14305 PF01196 Ribosomal protein L17 RK88_RS14315 PF00005 ABC transporter RK88_RS14320 PF00005 ABC transporter RK88_RS14325 PF02361 Cobalt transport protein RK88_RS14330 PF01416 tRNA pseudouridine synthase RK88_RS14335 PF00572 Ribosomal protein L13 RK88_RS14340 PF00380 Ribosomal protein S9/S16 RK88_RS14345 PF17191 RecG wedge domain RK88_RS14345 PF00270 DEAD/DEAH box helicase RK88_RS14345 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RK88_RS14365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK88_RS14365 PF00205 Thiamine pyrophosphate enzyme, central domain RK88_RS14365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK88_RS14370 PF03306 Alpha-acetolactate decarboxylase RK88_RS14380 PF05116 Sucrose-6F-phosphate phosphohydrolase RK88_RS14390 PF02278 Polysaccharide lyase family 8, super-sandwich domain RK88_RS14390 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RK88_RS14390 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RK88_RS14400 PF13411 MerR HTH family regulatory protein RK88_RS14405 PF00248 Aldo/keto reductase family RK88_RS14430 PF02146 Sir2 family RK88_RS14435 PF08220 DeoR-like helix-turn-helix domain RK88_RS14435 PF00455 DeoR C terminal sensor domain RK88_RS14440 PF02502 Ribose/Galactose Isomerase RK88_RS14445 PF02502 Ribose/Galactose Isomerase RK88_RS14450 PF00294 pfkB family carbohydrate kinase RK88_RS14455 PF01791 DeoC/LacD family aldolase RK88_RS14460 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RK88_RS14465 PF02378 Phosphotransferase system, EIIC RK88_RS14465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS14470 PF00232 Glycosyl hydrolase family 1 RK88_RS14480 PF16884 N-terminal domain of oxidoreductase RK88_RS14480 PF00107 Zinc-binding dehydrogenase RK88_RS14485 PF00107 Zinc-binding dehydrogenase RK88_RS14485 PF08240 Alcohol dehydrogenase GroES-like domain RK88_RS14490 PF02028 BCCT, betaine/carnitine/choline family transporter RK88_RS14505 PF03780 Asp23 family, cell envelope-related function RK88_RS14515 PF05977 Transmembrane secretion effector RK88_RS14520 PF06276 Ferric iron reductase FhuF-like transporter RK88_RS14520 PF04183 IucA / IucC family RK88_RS14525 PF01168 Alanine racemase, N-terminal domain RK88_RS14535 PF01497 Periplasmic binding protein RK88_RS14540 PF01032 FecCD transport family RK88_RS14545 PF01032 FecCD transport family RK88_RS14560 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK88_RS14565 PF01704 UTP--glucose-1-phosphate uridylyltransferase RK88_RS14570 PF03006 Haemolysin-III related RK88_RS14575 PF07690 Major Facilitator Superfamily RK88_RS14580 PF17080 Multidrug Resistance efflux pump RK88_RS14590 PF10609 NUBPL iron-transfer P-loop NTPase RK88_RS14645 PF00491 Arginase family RK88_RS14650 PF02457 DisA bacterial checkpoint controller nucleotide-binding RK88_RS14660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK88_RS14660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK88_RS14660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK88_RS14660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK88_RS14670 PF08125 Mannitol dehydrogenase C-terminal domain RK88_RS14670 PF01232 Mannitol dehydrogenase Rossmann domain RK88_RS14675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS14680 PF05043 Mga helix-turn-helix domain RK88_RS14680 PF00874 PRD domain RK88_RS14680 PF08279 HTH domain RK88_RS14680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK88_RS14680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS14685 PF02378 Phosphotransferase system, EIIC RK88_RS14685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK88_RS14695 PF01380 SIS domain RK88_RS14700 PF00005 ABC transporter RK88_RS14740 PF16916 Dimerisation domain of Zinc Transporter RK88_RS14740 PF01545 Cation efflux family RK88_RS14745 PF01022 Bacterial regulatory protein, arsR family RK88_RS14750 PF13460 NAD(P)H-binding RK88_RS14755 PF01238 Phosphomannose isomerase type I RK88_RS14775 PF00210 Ferritin-like domain RK88_RS14805 PF13936 Helix-turn-helix domain RK88_RS14805 PF00665 Integrase core domain RK88_RS14875 PF01695 IstB-like ATP binding protein