AYM28_RS00005 SM00382 ATPases associated with a variety of cellular activities AYM28_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AYM28_RS00010 SM00480 DNA polymerase III beta subunit AYM28_RS00025 SM00387 Histidine kinase-like ATPases AYM28_RS00025 SM00433 TopoisomeraseII AYM28_RS00030 SM00434 DNA Topoisomerase IV AYM28_RS00075 SM00267 diguanylate cyclase AYM28_RS00095 SM00788 Adenylosuccinate synthetase AYM28_RS00110 SM00448 cheY-homologous receiver domain AYM28_RS00110 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS00115 SM00091 PAS domain AYM28_RS00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM28_RS00115 SM00387 Histidine kinase-like ATPases AYM28_RS00115 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS00130 SM00849 Metallo-beta-lactamase superfamily AYM28_RS00210 SM00857 Resolvase, N terminal domain AYM28_RS00215 SM00857 Resolvase, N terminal domain AYM28_RS00295 SM00829 Enoylreductase AYM28_RS00405 SM00382 ATPases associated with a variety of cellular activities AYM28_RS00410 SM00382 ATPases associated with a variety of cellular activities AYM28_RS00460 SM00450 Rhodanese Homology Domain AYM28_RS00465 SM00450 Rhodanese Homology Domain AYM28_RS00465 SM00849 Metallo-beta-lactamase superfamily AYM28_RS00545 SM00148 Phospholipase C, catalytic domain (part); domain X AYM28_RS00570 SM00342 helix_turn_helix, arabinose operon control protein AYM28_RS00600 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS00615 SM00257 Lysin motif AYM28_RS00625 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS00685 SM00470 ParB-like nuclease domain AYM28_RS00705 SM00822 AYM28_RS00705 AYM28_RS00750 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS00765 SM01133 AYM28_RS00765 AYM28_RS00785 SM00382 ATPases associated with a variety of cellular activities AYM28_RS00790 SM00062 Bacterial periplasmic substrate-binding proteins AYM28_RS00920 SM00984 UDP binding domain AYM28_RS00960 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01020 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYM28_RS01080 SM00487 DEAD-like helicases superfamily AYM28_RS01100 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01140 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01185 SM00342 helix_turn_helix, arabinose operon control protein AYM28_RS01185 SM00448 cheY-homologous receiver domain AYM28_RS01255 SM00882 Coenzyme A transferase AYM28_RS01335 SM00829 Enoylreductase AYM28_RS01345 SM00829 Enoylreductase AYM28_RS01395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYM28_RS01395 SM00387 Histidine kinase-like ATPases AYM28_RS01400 SM00448 cheY-homologous receiver domain AYM28_RS01400 SM00850 LytTr DNA-binding domain AYM28_RS01415 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS01415 SM00866 AYM28_RS01415 AYM28_RS01465 SM00354 helix_turn _helix lactose operon repressor AYM28_RS01500 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01700 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01735 SM01130 AYM28_RS01735 AYM28_RS01790 SM00506 Appr-1"-p processing enzyme AYM28_RS01835 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS01915 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS01925 SM00382 ATPases associated with a variety of cellular activities AYM28_RS01975 SM00470 ParB-like nuclease domain AYM28_RS02065 SM00855 Phosphoglycerate mutase family AYM28_RS02140 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM28_RS02140 SM01240 AYM28_RS02140 AYM28_RS02350 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYM28_RS02385 SM00014 Acid phosphatase homologues AYM28_RS02415 SM00382 ATPases associated with a variety of cellular activities AYM28_RS02415 SM00930 AYM28_RS02415 AYM28_RS02430 SM00257 Lysin motif AYM28_RS02485 SM00642 Alpha-amylase domain AYM28_RS02490 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS02490 SM00866 AYM28_RS02490 AYM28_RS02510 SM00382 ATPases associated with a variety of cellular activities AYM28_RS02520 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM28_RS02520 SM00493 AYM28_RS02520 AYM28_RS02585 SM00465 GIY-YIG type nucleases (URI domain) AYM28_RS02605 SM00493 AYM28_RS02605 AYM28_RS02610 SM00650 Ribosomal RNA adenine dimethylases AYM28_RS02650 SM01400 AYM28_RS02650 AYM28_RS02670 SM00487 DEAD-like helicases superfamily AYM28_RS02670 SM00490 helicase superfamily c-terminal domain AYM28_RS02670 SM00982 AYM28_RS02670 AYM28_RS02670 SM01058 CarD-like/TRCF domain AYM28_RS02685 SM00363 S4 RNA-binding domain AYM28_RS02695 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS02700 SM00977 TilS substrate C-terminal domain AYM28_RS02710 SM00382 ATPases associated with a variety of cellular activities AYM28_RS02730 SM00905 Dihydroneopterin aldolase AYM28_RS02815 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS02850 SM00382 ATPases associated with a variety of cellular activities AYM28_RS02850 SM01086 C-terminal, D2-small domain, of ClpB protein AYM28_RS02855 SM00382 ATPases associated with a variety of cellular activities AYM28_RS02860 SM00670 Large family of predicted nucleotide-binding domains AYM28_RS02880 SM00840 AYM28_RS02880 AYM28_RS02885 SM00535 Ribonuclease III family AYM28_RS02890 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYM28_RS02915 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AYM28_RS02915 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYM28_RS02920 SM00649 Ribosomal protein L11/L12 AYM28_RS02950 SM00663 RNA polymerase I subunit A N-terminus AYM28_RS02970 SM00838 Elongation factor G C-terminus AYM28_RS02970 SM00889 Elongation factor G, domain IV AYM28_RS03095 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYM28_RS03150 SM00986 Uracil DNA glycosylase superfamily AYM28_RS03150 SM00987 UreE urease accessory protein, C-terminal domain AYM28_RS03330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS03340 SM00829 Enoylreductase AYM28_RS03355 SM00836 DALR anticodon binding domain AYM28_RS03355 SM01016 Arginyl tRNA synthetase N terminal dom AYM28_RS03370 SM00478 endonuclease III AYM28_RS03565 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03570 SM00529 Helix-turn-helix diphteria tox regulatory element AYM28_RS03570 SM00899 AYM28_RS03570 AYM28_RS03585 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03615 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03635 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03655 SM01120 AYM28_RS03655 AYM28_RS03700 SM00448 cheY-homologous receiver domain AYM28_RS03700 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS03705 SM00387 Histidine kinase-like ATPases AYM28_RS03710 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03730 SM00257 Lysin motif AYM28_RS03835 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03840 SM00382 ATPases associated with a variety of cellular activities AYM28_RS03845 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS03850 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYM28_RS03905 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM28_RS03905 SM01134 AYM28_RS03905 AYM28_RS03925 SM01091 Transporter associated domain AYM28_RS03940 SM00387 Histidine kinase-like ATPases AYM28_RS03940 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS03945 SM00448 cheY-homologous receiver domain AYM28_RS03945 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS04000 SM00796 Allophanate hydrolase subunit 1 AYM28_RS04005 SM00797 Allophanate hydrolase subunit 2 AYM28_RS04015 SM00382 ATPases associated with a variety of cellular activities AYM28_RS04020 SM00341 Helicase and RNase D C-terminal AYM28_RS04020 SM00487 DEAD-like helicases superfamily AYM28_RS04020 SM00490 helicase superfamily c-terminal domain AYM28_RS04020 SM00956 AYM28_RS04020 AYM28_RS04025 SM00382 ATPases associated with a variety of cellular activities AYM28_RS04055 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYM28_RS04130 SM00382 ATPases associated with a variety of cellular activities AYM28_RS04190 SM00267 diguanylate cyclase AYM28_RS04210 SM00487 DEAD-like helicases superfamily AYM28_RS04210 SM00490 helicase superfamily c-terminal domain AYM28_RS04225 SM00957 SecA DEAD-like domain AYM28_RS04225 SM00958 SecA preprotein cross-linking domain AYM28_RS04235 SM00937 AYM28_RS04235 AYM28_RS04245 SM00257 Lysin motif AYM28_RS04260 SM00487 DEAD-like helicases superfamily AYM28_RS04260 SM00490 helicase superfamily c-terminal domain AYM28_RS04290 SM00028 Tetratricopeptide repeats AYM28_RS04360 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYM28_RS04380 SM01192 AYM28_RS04380 AYM28_RS04380 SM01193 AYM28_RS04380 AYM28_RS04400 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS04400 SM00357 Cold shock protein domain AYM28_RS04400 SM00955 AYM28_RS04400 AYM28_RS04470 SM00318 Staphylococcal nuclease homologues AYM28_RS04475 SM00357 Cold shock protein domain AYM28_RS04515 SM00855 Phosphoglycerate mutase family AYM28_RS04575 SM00493 AYM28_RS04575 AYM28_RS04585 SM00382 ATPases associated with a variety of cellular activities AYM28_RS04585 SM00930 AYM28_RS04585 AYM28_RS04620 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS04625 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS04655 SM00885 D5 N terminal like AYM28_RS04715 SM00382 ATPases associated with a variety of cellular activities AYM28_RS04755 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS04770 SM01040 BRO family, N-terminal domain AYM28_RS04815 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05045 SM00047 Lysozyme subfamily 2 AYM28_RS05065 SM00287 Bacterial SH3 domain homologues AYM28_RS05065 SM00644 AYM28_RS05065 AYM28_RS05120 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS05265 SM01298 AYM28_RS05265 AYM28_RS05275 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS05290 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYM28_RS05380 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05380 SM01086 C-terminal, D2-small domain, of ClpB protein AYM28_RS05425 SM00825 Beta-ketoacyl synthase AYM28_RS05445 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05450 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05465 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05470 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05525 SM01118 AYM28_RS05525 AYM28_RS05535 SM00954 Region found in RelA / SpoT proteins AYM28_RS05550 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM28_RS05550 SM00924 MgtE intracellular N domain AYM28_RS05615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM28_RS05645 SM00914 AYM28_RS05645 AYM28_RS05690 SM00382 ATPases associated with a variety of cellular activities AYM28_RS05790 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS05800 SM00047 Lysozyme subfamily 2 AYM28_RS05800 SM00644 AYM28_RS05800 AYM28_RS05865 SM01001 AIR carboxylase AYM28_RS05885 SM01211 AYM28_RS05885 AYM28_RS05910 SM00798 AICARFT/IMPCHase bienzyme AYM28_RS05910 SM00851 MGS-like domain AYM28_RS05915 SM01209 AYM28_RS05915 AYM28_RS05915 SM01210 AYM28_RS05915 AYM28_RS05925 SM00382 ATPases associated with a variety of cellular activities AYM28_RS06000 SM00849 Metallo-beta-lactamase superfamily AYM28_RS06030 SM00861 Transketolase, pyrimidine binding domain AYM28_RS06050 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS06055 SM00382 ATPases associated with a variety of cellular activities AYM28_RS06105 SM00838 Elongation factor G C-terminus AYM28_RS06130 SM00878 Biotin carboxylase C-terminal domain AYM28_RS06210 SM00725 NEAr Transporter domain AYM28_RS06215 SM00725 NEAr Transporter domain AYM28_RS06220 SM00725 NEAr Transporter domain AYM28_RS06255 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYM28_RS06265 SM00873 B3/4 domain AYM28_RS06265 SM00874 tRNA synthetase B5 domain AYM28_RS06265 SM00896 Ferredoxin-fold anticodon binding domain AYM28_RS06290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM28_RS06290 SM00481 DNA polymerase alpha chain like domain AYM28_RS06290 SM00483 DNA polymerase X family AYM28_RS06295 SM00463 Small MutS-related domain AYM28_RS06295 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYM28_RS06295 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM28_RS06310 SM00465 GIY-YIG type nucleases (URI domain) AYM28_RS06510 SM00740 AYM28_RS06510 AYM28_RS06530 SM00842 Cell division protein FtsA AYM28_RS06535 SM00864 Tubulin/FtsZ family, GTPase domain AYM28_RS06535 SM00865 Tubulin/FtsZ family, C-terminal domain AYM28_RS06590 SM00363 S4 RNA-binding domain AYM28_RS06615 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AYM28_RS06620 SM00851 MGS-like domain AYM28_RS06620 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYM28_RS06620 SM01209 AYM28_RS06620 AYM28_RS06625 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYM28_RS06650 SM00072 Guanylate kinase homologues. AYM28_RS06655 SM01409 AYM28_RS06655 AYM28_RS06665 SM00487 DEAD-like helicases superfamily AYM28_RS06665 SM00490 helicase superfamily c-terminal domain AYM28_RS06700 SM00331 Sigma factor PP2C-like phosphatases AYM28_RS06700 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AYM28_RS06705 SM00220 Serine/Threonine protein kinases, catalytic domain AYM28_RS06705 SM00740 AYM28_RS06705 AYM28_RS06720 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AYM28_RS06735 SM01120 AYM28_RS06735 AYM28_RS06735 SM01121 AYM28_RS06735 AYM28_RS06740 SM00487 DEAD-like helicases superfamily AYM28_RS06740 SM00490 helicase superfamily c-terminal domain AYM28_RS06755 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYM28_RS06760 SM00822 AYM28_RS06760 AYM28_RS06775 SM00358 Double-stranded RNA binding motif AYM28_RS06775 SM00535 Ribonuclease III family AYM28_RS06780 SM00968 SMC proteins Flexible Hinge Domain AYM28_RS06785 SM00382 ATPases associated with a variety of cellular activities AYM28_RS06785 SM00962 SRP54-type protein, GTPase domain AYM28_RS06785 SM00963 SRP54-type protein, helical bundle domain AYM28_RS06795 SM00382 ATPases associated with a variety of cellular activities AYM28_RS06795 SM00962 SRP54-type protein, GTPase domain AYM28_RS06795 SM00963 SRP54-type protein, helical bundle domain AYM28_RS06840 SM00881 CoA binding domain AYM28_RS06845 SM00257 Lysin motif AYM28_RS06860 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYM28_RS06860 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYM28_RS06860 SM00493 AYM28_RS06860 AYM28_RS06880 SM00382 ATPases associated with a variety of cellular activities AYM28_RS06880 SM01086 C-terminal, D2-small domain, of ClpB protein AYM28_RS06940 SM00479 AYM28_RS06940 AYM28_RS06940 SM00481 DNA polymerase alpha chain like domain AYM28_RS06955 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS06955 SM00322 K homology RNA-binding domain AYM28_RS06985 SM00904 Riboflavin kinase AYM28_RS06990 SM01387 AYM28_RS06990 AYM28_RS06995 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS06995 SM00322 K homology RNA-binding domain AYM28_RS07005 SM00849 Metallo-beta-lactamase superfamily AYM28_RS07010 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07010 SM00843 AYM28_RS07010 AYM28_RS07015 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS07015 SM00866 AYM28_RS07015 AYM28_RS07040 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS07050 SM00852 Probable molybdopterin binding domain AYM28_RS07055 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07060 SM00322 K homology RNA-binding domain AYM28_RS07060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS07090 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS07105 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYM28_RS07105 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM28_RS07110 SM00853 MutL C terminal dimerisation domain AYM28_RS07110 SM01340 AYM28_RS07110 AYM28_RS07165 SM00422 helix_turn_helix, mercury resistance AYM28_RS07170 SM01230 AYM28_RS07170 AYM28_RS07280 SM00155 Phospholipase D. Active site motifs. AYM28_RS07285 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07300 SM00421 helix_turn_helix, Lux Regulon AYM28_RS07300 SM00448 cheY-homologous receiver domain AYM28_RS07310 SM00318 Staphylococcal nuclease homologues AYM28_RS07365 SM01060 AYM28_RS07365 AYM28_RS07380 SM01240 AYM28_RS07380 AYM28_RS07410 SM00861 Transketolase, pyrimidine binding domain AYM28_RS07480 SM01207 AYM28_RS07480 AYM28_RS07485 SM00387 Histidine kinase-like ATPases AYM28_RS07485 SM00433 TopoisomeraseII AYM28_RS07490 SM00434 DNA Topoisomerase IV AYM28_RS07505 SM01061 CAT RNA binding domain AYM28_RS07610 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07615 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07650 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07680 SM00382 ATPases associated with a variety of cellular activities AYM28_RS07695 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYM28_RS07700 SM01130 AYM28_RS07700 AYM28_RS07720 SM01005 Alanine racemase, C-terminal domain AYM28_RS07735 SM00357 Cold shock protein domain AYM28_RS07775 SM00327 von Willebrand factor (vWF) type A domain AYM28_RS07800 SM00861 Transketolase, pyrimidine binding domain AYM28_RS07805 SM00387 Histidine kinase-like ATPases AYM28_RS07805 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS07810 SM00448 cheY-homologous receiver domain AYM28_RS07810 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS07825 SM01321 AYM28_RS07825 AYM28_RS07830 SM00014 Acid phosphatase homologues AYM28_RS07845 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM28_RS07845 SM00245 tail specific protease AYM28_RS07890 SM00567 E-Z type HEAT repeats AYM28_RS07890 SM00932 Scaffold protein Nfu/NifU N terminal AYM28_RS07895 SM00932 Scaffold protein Nfu/NifU N terminal AYM28_RS07920 SM00844 GA module AYM28_RS07940 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYM28_RS07940 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYM28_RS07945 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYM28_RS07945 SM00475 5'-3' exonuclease AYM28_RS07965 SM00981 AYM28_RS07965 AYM28_RS08010 SM00478 endonuclease III AYM28_RS08010 SM00525 AYM28_RS08010 AYM28_RS08025 SM00479 AYM28_RS08025 AYM28_RS08025 SM00491 AYM28_RS08025 AYM28_RS08060 SM00914 AYM28_RS08060 AYM28_RS08065 SM00028 Tetratricopeptide repeats AYM28_RS08090 SM00562 AYM28_RS08090 AYM28_RS08115 SM00411 bacterial (prokaryotic) histone like domain AYM28_RS08130 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS08155 SM00870 AYM28_RS08155 AYM28_RS08170 SM00257 Lysin motif AYM28_RS08175 SM00487 DEAD-like helicases superfamily AYM28_RS08175 SM00490 helicase superfamily c-terminal domain AYM28_RS08235 SM00287 Bacterial SH3 domain homologues AYM28_RS08235 SM00646 AYM28_RS08235 AYM28_RS08315 SM00635 Bacterial Ig-like domain 2 AYM28_RS08370 SM00507 HNH nucleases AYM28_RS08380 SM00487 DEAD-like helicases superfamily AYM28_RS08385 SM00990 AYM28_RS08385 AYM28_RS08470 SM00482 DNA polymerase A domain AYM28_RS08525 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS08530 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS08580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM28_RS08580 SM00387 Histidine kinase-like ATPases AYM28_RS08580 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS08585 SM00448 cheY-homologous receiver domain AYM28_RS08585 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS08590 SM00363 S4 RNA-binding domain AYM28_RS08655 SM00342 helix_turn_helix, arabinose operon control protein AYM28_RS08655 SM00871 Bacterial transcription activator, effector binding domain AYM28_RS08660 SM00642 Alpha-amylase domain AYM28_RS08665 SM00354 helix_turn _helix lactose operon repressor AYM28_RS08680 SM01350 AYM28_RS08680 AYM28_RS08710 SM00861 Transketolase, pyrimidine binding domain AYM28_RS08760 SM00878 Biotin carboxylase C-terminal domain AYM28_RS08770 SM00841 Elongation factor P, C-terminal AYM28_RS08770 SM01185 AYM28_RS08770 AYM28_RS08795 SM00450 Rhodanese Homology Domain AYM28_RS08855 SM00849 Metallo-beta-lactamase superfamily AYM28_RS08910 SM00382 ATPases associated with a variety of cellular activities AYM28_RS08915 SM00518 AP endonuclease family 2 AYM28_RS08920 SM00487 DEAD-like helicases superfamily AYM28_RS08920 SM00490 helicase superfamily c-terminal domain AYM28_RS08940 SM00400 zinc finger AYM28_RS08940 SM00493 AYM28_RS08940 AYM28_RS08950 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM28_RS09010 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS09025 SM00271 DnaJ molecular chaperone homology domain AYM28_RS09045 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS09055 SM00838 Elongation factor G C-terminus AYM28_RS09070 SM00849 Metallo-beta-lactamase superfamily AYM28_RS09080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM28_RS09095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS09105 SM01103 AYM28_RS09105 AYM28_RS09155 SM00878 Biotin carboxylase C-terminal domain AYM28_RS09165 SM00797 Allophanate hydrolase subunit 2 AYM28_RS09170 SM00796 Allophanate hydrolase subunit 1 AYM28_RS09205 SM00732 Likely ribonuclease with RNase H fold. AYM28_RS09215 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYM28_RS09220 SM00382 ATPases associated with a variety of cellular activities AYM28_RS09225 SM00028 Tetratricopeptide repeats AYM28_RS09265 SM00382 ATPases associated with a variety of cellular activities AYM28_RS09295 SM00287 Bacterial SH3 domain homologues AYM28_RS09295 SM00646 AYM28_RS09295 AYM28_RS09305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS09305 SM00954 Region found in RelA / SpoT proteins AYM28_RS09325 SM01323 AYM28_RS09325 AYM28_RS09340 SM00382 ATPases associated with a variety of cellular activities AYM28_RS09345 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM28_RS09450 SM01004 Delta-aminolevulinic acid dehydratase AYM28_RS09480 SM00382 ATPases associated with a variety of cellular activities AYM28_RS09480 SM00994 ClpX C4-type zinc finger AYM28_RS09480 SM01086 C-terminal, D2-small domain, of ClpB protein AYM28_RS09530 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYM28_RS09555 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYM28_RS09565 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AYM28_RS09565 SM01232 AYM28_RS09565 AYM28_RS09570 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYM28_RS09570 SM00474 3'-5' exonuclease AYM28_RS09570 SM00475 5'-3' exonuclease AYM28_RS09570 SM00482 DNA polymerase A domain AYM28_RS09580 SM00387 Histidine kinase-like ATPases AYM28_RS09580 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS09585 SM00448 cheY-homologous receiver domain AYM28_RS09585 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS09595 SM01329 AYM28_RS09595 AYM28_RS09635 SM00919 Malic enzyme, NAD binding domain AYM28_RS09635 SM01274 AYM28_RS09635 AYM28_RS09640 SM00481 DNA polymerase alpha chain like domain AYM28_RS09650 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM28_RS09660 SM00849 Metallo-beta-lactamase superfamily AYM28_RS09675 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYM28_RS09675 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYM28_RS09705 SM00981 AYM28_RS09705 AYM28_RS09725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYM28_RS09730 SM00363 S4 RNA-binding domain AYM28_RS09730 SM01390 AYM28_RS09730 AYM28_RS09775 SM00563 Phosphate acyltransferases AYM28_RS09780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM28_RS09785 SM00363 S4 RNA-binding domain AYM28_RS09800 SM00725 NEAr Transporter domain AYM28_RS09825 SM00354 helix_turn _helix lactose operon repressor AYM28_RS09835 SM00830 Chorismate mutase type II AYM28_RS09860 SM00843 AYM28_RS09860 AYM28_RS09890 SM00849 Metallo-beta-lactamase superfamily AYM28_RS09930 SM00363 S4 RNA-binding domain AYM28_RS09950 SM00450 Rhodanese Homology Domain AYM28_RS09965 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS09975 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS10030 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYM28_RS10040 SM00226 Low molecular weight phosphatase family AYM28_RS10045 SM00047 Lysozyme subfamily 2 AYM28_RS10135 SM01234 AYM28_RS10135 AYM28_RS10155 SM00894 Excalibur calcium-binding domain AYM28_RS10295 SM00382 ATPases associated with a variety of cellular activities AYM28_RS10310 SM01260 AYM28_RS10310 AYM28_RS10440 SM00382 ATPases associated with a variety of cellular activities AYM28_RS10470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS10505 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS10510 SM00421 helix_turn_helix, Lux Regulon AYM28_RS10510 SM00448 cheY-homologous receiver domain AYM28_RS10565 SM00382 ATPases associated with a variety of cellular activities AYM28_RS10570 SM00062 Bacterial periplasmic substrate-binding proteins AYM28_RS10765 SM00382 ATPases associated with a variety of cellular activities AYM28_RS10775 SM00478 endonuclease III AYM28_RS10845 SM00226 Low molecular weight phosphatase family AYM28_RS10860 SM00421 helix_turn_helix, Lux Regulon AYM28_RS10860 SM00448 cheY-homologous receiver domain AYM28_RS10865 SM00387 Histidine kinase-like ATPases AYM28_RS10925 SM00479 AYM28_RS10925 AYM28_RS10945 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYM28_RS10960 SM00845 GatB domain AYM28_RS10985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM28_RS10985 SM00292 breast cancer carboxy-terminal domain AYM28_RS10985 SM00532 Ligase N family AYM28_RS11005 SM00998 Adenylosuccinate lyase C-terminus AYM28_RS11065 SM00710 Parallel beta-helix repeats AYM28_RS11075 SM01131 AYM28_RS11075 AYM28_RS11135 SM00382 ATPases associated with a variety of cellular activities AYM28_RS11145 SM00382 ATPases associated with a variety of cellular activities AYM28_RS11150 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS11210 SM00287 Bacterial SH3 domain homologues AYM28_RS11290 SM00635 Bacterial Ig-like domain 2 AYM28_RS11350 SM00507 HNH nucleases AYM28_RS11495 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS11505 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS11510 SM00479 AYM28_RS11510 AYM28_RS11610 SM00883 Chaperonin 10 Kd subunit AYM28_RS11645 SM00793 Accessory gene regulator B AYM28_RS11650 SM00794 Staphylococcal AgrD protein AYM28_RS11675 SM00640 Glycosyl hydrolases family 32 AYM28_RS11680 SM00354 helix_turn _helix lactose operon repressor AYM28_RS11700 SM00881 CoA binding domain AYM28_RS11705 SM00382 ATPases associated with a variety of cellular activities AYM28_RS11715 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM28_RS11765 SM00917 LeuA allosteric (dimerisation) domain AYM28_RS11770 SM01329 AYM28_RS11770 AYM28_RS11830 SM00731 SprT homologues. AYM28_RS11835 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS11835 SM00732 Likely ribonuclease with RNase H fold. AYM28_RS11855 SM00331 Sigma factor PP2C-like phosphatases AYM28_RS11855 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AYM28_RS11875 SM01005 Alanine racemase, C-terminal domain AYM28_RS11920 SM00387 Histidine kinase-like ATPases AYM28_RS11920 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS11925 SM00448 cheY-homologous receiver domain AYM28_RS11925 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS11930 SM00487 DEAD-like helicases superfamily AYM28_RS11930 SM00490 helicase superfamily c-terminal domain AYM28_RS11965 SM00155 Phospholipase D. Active site motifs. AYM28_RS11970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM28_RS12055 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12115 SM00226 Low molecular weight phosphatase family AYM28_RS12130 SM00937 AYM28_RS12130 AYM28_RS12150 SM00357 Cold shock protein domain AYM28_RS12150 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12150 SM00959 Rho termination factor, N-terminal domain AYM28_RS12225 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AYM28_RS12235 SM01133 AYM28_RS12235 AYM28_RS12275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYM28_RS12315 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12540 SM00829 Enoylreductase AYM28_RS12545 SM00829 Enoylreductase AYM28_RS12570 SM01133 AYM28_RS12570 AYM28_RS12585 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM28_RS12585 SM01134 AYM28_RS12585 AYM28_RS12615 SM00422 helix_turn_helix, mercury resistance AYM28_RS12670 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12710 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12715 SM00382 ATPases associated with a variety of cellular activities AYM28_RS12725 SM00662 RNA polymerases D AYM28_RS12745 SM00316 Ribosomal protein S1-like RNA-binding domain AYM28_RS12800 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYM28_RS12805 SM01374 AYM28_RS12805 AYM28_RS12825 SM00322 K homology RNA-binding domain AYM28_RS12840 SM01382 AYM28_RS12840 AYM28_RS12840 SM01383 AYM28_RS12840 AYM28_RS12860 SM01403 AYM28_RS12860 AYM28_RS12875 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYM28_RS12875 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYM28_RS12875 SM00493 AYM28_RS12875 AYM28_RS12935 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS12965 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS12990 SM00852 Probable molybdopterin binding domain AYM28_RS13000 SM00852 Probable molybdopterin binding domain AYM28_RS13010 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13075 SM00988 UreE urease accessory protein, N-terminal domain AYM28_RS13115 SM00342 helix_turn_helix, arabinose operon control protein AYM28_RS13165 SM00047 Lysozyme subfamily 2 AYM28_RS13180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYM28_RS13180 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYM28_RS13195 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM28_RS13350 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13440 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS13460 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13470 SM00448 cheY-homologous receiver domain AYM28_RS13470 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS13475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM28_RS13475 SM00387 Histidine kinase-like ATPases AYM28_RS13475 SM00388 His Kinase A (phosphoacceptor) domain AYM28_RS13480 SM00850 LytTr DNA-binding domain AYM28_RS13515 SM00829 Enoylreductase AYM28_RS13570 SM00342 helix_turn_helix, arabinose operon control protein AYM28_RS13595 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS13620 SM00422 helix_turn_helix, mercury resistance AYM28_RS13625 SM00421 helix_turn_helix, Lux Regulon AYM28_RS13625 SM00448 cheY-homologous receiver domain AYM28_RS13630 SM00387 Histidine kinase-like ATPases AYM28_RS13655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYM28_RS13735 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13745 SM00062 Bacterial periplasmic substrate-binding proteins AYM28_RS13745 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AYM28_RS13765 SM00855 Phosphoglycerate mutase family AYM28_RS13825 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM28_RS13825 SM00876 Biotin and Thiamin Synthesis associated domain AYM28_RS13850 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13855 SM00382 ATPases associated with a variety of cellular activities AYM28_RS13895 SM00871 Bacterial transcription activator, effector binding domain AYM28_RS13975 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM28_RS13975 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14025 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14070 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14075 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14210 SM00487 DEAD-like helicases superfamily AYM28_RS14210 SM00490 helicase superfamily c-terminal domain AYM28_RS14300 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM28_RS14300 SM00895 AYM28_RS14300 AYM28_RS14305 SM00422 helix_turn_helix, mercury resistance AYM28_RS14310 SM00954 Region found in RelA / SpoT proteins AYM28_RS14345 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS14355 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14385 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS14415 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14550 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14550 SM01086 C-terminal, D2-small domain, of ClpB protein AYM28_RS14565 SM00899 AYM28_RS14565 AYM28_RS14590 SM01266 AYM28_RS14590 AYM28_RS14795 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AYM28_RS14980 SM00382 ATPases associated with a variety of cellular activities AYM28_RS14985 SM00387 Histidine kinase-like ATPases AYM28_RS14990 SM00448 cheY-homologous receiver domain AYM28_RS14990 SM00862 Transcriptional regulatory protein, C terminal AYM28_RS15000 SM00098 Alkaline phosphatase homologues AYM28_RS15010 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM28_RS15095 SM00047 Lysozyme subfamily 2 AYM28_RS15120 SM00957 SecA DEAD-like domain AYM28_RS15120 SM00958 SecA preprotein cross-linking domain AYM28_RS15150 SM00903 Flavin reductase like domain AYM28_RS15170 SM00903 Flavin reductase like domain AYM28_RS15305 SM00382 ATPases associated with a variety of cellular activities AYM28_RS15320 SM00867 YceI-like domain AYM28_RS15330 SM00450 Rhodanese Homology Domain AYM28_RS15385 SM00382 ATPases associated with a variety of cellular activities AYM28_RS15420 SM00357 Cold shock protein domain AYM28_RS15425 SM00530 Helix-turn-helix XRE-family like proteins AYM28_RS15445 SM00470 ParB-like nuclease domain AYM28_RS15455 SM01228 AYM28_RS15455 AYM28_RS15675 SM00480 DNA polymerase III beta subunit AYM28_RS15835 SM00091 PAS domain