AYM35_RS00005 SM00382 ATPases associated with a variety of cellular activities AYM35_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AYM35_RS00010 SM00480 DNA polymerase III beta subunit AYM35_RS00025 SM00387 Histidine kinase-like ATPases AYM35_RS00025 SM00433 TopoisomeraseII AYM35_RS00030 SM00434 DNA Topoisomerase IV AYM35_RS00075 SM00267 diguanylate cyclase AYM35_RS00095 SM00788 Adenylosuccinate synthetase AYM35_RS00110 SM00448 cheY-homologous receiver domain AYM35_RS00110 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS00115 SM00091 PAS domain AYM35_RS00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM35_RS00115 SM00387 Histidine kinase-like ATPases AYM35_RS00115 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS00130 SM00849 Metallo-beta-lactamase superfamily AYM35_RS00210 SM00857 Resolvase, N terminal domain AYM35_RS00215 SM00857 Resolvase, N terminal domain AYM35_RS00295 SM00829 Enoylreductase AYM35_RS00405 SM00382 ATPases associated with a variety of cellular activities AYM35_RS00410 SM00382 ATPases associated with a variety of cellular activities AYM35_RS00460 SM00450 Rhodanese Homology Domain AYM35_RS00465 SM00450 Rhodanese Homology Domain AYM35_RS00465 SM00849 Metallo-beta-lactamase superfamily AYM35_RS00545 SM00148 Phospholipase C, catalytic domain (part); domain X AYM35_RS00570 SM00342 helix_turn_helix, arabinose operon control protein AYM35_RS00600 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS00615 SM00257 Lysin motif AYM35_RS00625 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS00685 SM00470 ParB-like nuclease domain AYM35_RS00705 SM00822 AYM35_RS00705 AYM35_RS00750 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS00765 SM01133 AYM35_RS00765 AYM35_RS00785 SM00382 ATPases associated with a variety of cellular activities AYM35_RS00790 SM00062 Bacterial periplasmic substrate-binding proteins AYM35_RS00920 SM00984 UDP binding domain AYM35_RS00960 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01020 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYM35_RS01080 SM00487 DEAD-like helicases superfamily AYM35_RS01100 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01140 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01185 SM00342 helix_turn_helix, arabinose operon control protein AYM35_RS01185 SM00448 cheY-homologous receiver domain AYM35_RS01255 SM00882 Coenzyme A transferase AYM35_RS01335 SM00829 Enoylreductase AYM35_RS01345 SM00829 Enoylreductase AYM35_RS01395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYM35_RS01395 SM00387 Histidine kinase-like ATPases AYM35_RS01400 SM00448 cheY-homologous receiver domain AYM35_RS01400 SM00850 LytTr DNA-binding domain AYM35_RS01415 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS01415 SM00866 AYM35_RS01415 AYM35_RS01465 SM00354 helix_turn _helix lactose operon repressor AYM35_RS01500 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01665 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01700 SM01130 AYM35_RS01700 AYM35_RS01755 SM00506 Appr-1"-p processing enzyme AYM35_RS01800 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS01880 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS01890 SM00382 ATPases associated with a variety of cellular activities AYM35_RS01940 SM00470 ParB-like nuclease domain AYM35_RS02030 SM00855 Phosphoglycerate mutase family AYM35_RS02105 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM35_RS02105 SM01240 AYM35_RS02105 AYM35_RS02315 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYM35_RS02350 SM00014 Acid phosphatase homologues AYM35_RS02380 SM00382 ATPases associated with a variety of cellular activities AYM35_RS02380 SM00930 AYM35_RS02380 AYM35_RS02395 SM00257 Lysin motif AYM35_RS02450 SM00642 Alpha-amylase domain AYM35_RS02455 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS02455 SM00866 AYM35_RS02455 AYM35_RS02475 SM00382 ATPases associated with a variety of cellular activities AYM35_RS02485 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM35_RS02485 SM00493 AYM35_RS02485 AYM35_RS02550 SM00465 GIY-YIG type nucleases (URI domain) AYM35_RS02570 SM00493 AYM35_RS02570 AYM35_RS02575 SM00650 Ribosomal RNA adenine dimethylases AYM35_RS02615 SM01400 AYM35_RS02615 AYM35_RS02635 SM00487 DEAD-like helicases superfamily AYM35_RS02635 SM00490 helicase superfamily c-terminal domain AYM35_RS02635 SM00982 AYM35_RS02635 AYM35_RS02635 SM01058 CarD-like/TRCF domain AYM35_RS02650 SM00363 S4 RNA-binding domain AYM35_RS02660 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS02665 SM00977 TilS substrate C-terminal domain AYM35_RS02675 SM00382 ATPases associated with a variety of cellular activities AYM35_RS02695 SM00905 Dihydroneopterin aldolase AYM35_RS02780 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS02815 SM00382 ATPases associated with a variety of cellular activities AYM35_RS02815 SM01086 C-terminal, D2-small domain, of ClpB protein AYM35_RS02820 SM00382 ATPases associated with a variety of cellular activities AYM35_RS02825 SM00670 Large family of predicted nucleotide-binding domains AYM35_RS02845 SM00840 AYM35_RS02845 AYM35_RS02850 SM00535 Ribonuclease III family AYM35_RS02855 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYM35_RS02880 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AYM35_RS02880 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYM35_RS02885 SM00649 Ribosomal protein L11/L12 AYM35_RS02915 SM00663 RNA polymerase I subunit A N-terminus AYM35_RS02935 SM00838 Elongation factor G C-terminus AYM35_RS02935 SM00889 Elongation factor G, domain IV AYM35_RS03060 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYM35_RS03115 SM00986 Uracil DNA glycosylase superfamily AYM35_RS03115 SM00987 UreE urease accessory protein, C-terminal domain AYM35_RS03295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS03305 SM00829 Enoylreductase AYM35_RS03320 SM00836 DALR anticodon binding domain AYM35_RS03320 SM01016 Arginyl tRNA synthetase N terminal dom AYM35_RS03335 SM00478 endonuclease III AYM35_RS03530 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03535 SM00529 Helix-turn-helix diphteria tox regulatory element AYM35_RS03535 SM00899 AYM35_RS03535 AYM35_RS03550 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03580 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03600 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03620 SM01120 AYM35_RS03620 AYM35_RS03665 SM00448 cheY-homologous receiver domain AYM35_RS03665 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS03670 SM00387 Histidine kinase-like ATPases AYM35_RS03675 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03695 SM00257 Lysin motif AYM35_RS03800 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03805 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03810 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS03815 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYM35_RS03870 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM35_RS03870 SM01134 AYM35_RS03870 AYM35_RS03890 SM01091 Transporter associated domain AYM35_RS03905 SM00387 Histidine kinase-like ATPases AYM35_RS03905 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS03910 SM00448 cheY-homologous receiver domain AYM35_RS03910 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS03965 SM00796 Allophanate hydrolase subunit 1 AYM35_RS03970 SM00797 Allophanate hydrolase subunit 2 AYM35_RS03980 SM00382 ATPases associated with a variety of cellular activities AYM35_RS03985 SM00341 Helicase and RNase D C-terminal AYM35_RS03985 SM00487 DEAD-like helicases superfamily AYM35_RS03985 SM00490 helicase superfamily c-terminal domain AYM35_RS03985 SM00956 AYM35_RS03985 AYM35_RS03990 SM00382 ATPases associated with a variety of cellular activities AYM35_RS04020 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYM35_RS04095 SM00382 ATPases associated with a variety of cellular activities AYM35_RS04155 SM00267 diguanylate cyclase AYM35_RS04175 SM00487 DEAD-like helicases superfamily AYM35_RS04175 SM00490 helicase superfamily c-terminal domain AYM35_RS04190 SM00957 SecA DEAD-like domain AYM35_RS04190 SM00958 SecA preprotein cross-linking domain AYM35_RS04200 SM00937 AYM35_RS04200 AYM35_RS04210 SM00257 Lysin motif AYM35_RS04225 SM00487 DEAD-like helicases superfamily AYM35_RS04225 SM00490 helicase superfamily c-terminal domain AYM35_RS04255 SM00028 Tetratricopeptide repeats AYM35_RS04325 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYM35_RS04345 SM01192 AYM35_RS04345 AYM35_RS04345 SM01193 AYM35_RS04345 AYM35_RS04365 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS04365 SM00357 Cold shock protein domain AYM35_RS04365 SM00955 AYM35_RS04365 AYM35_RS04435 SM00318 Staphylococcal nuclease homologues AYM35_RS04440 SM00357 Cold shock protein domain AYM35_RS04480 SM00855 Phosphoglycerate mutase family AYM35_RS04540 SM00493 AYM35_RS04540 AYM35_RS04550 SM00382 ATPases associated with a variety of cellular activities AYM35_RS04550 SM00930 AYM35_RS04550 AYM35_RS04585 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS04590 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS04620 SM00885 D5 N terminal like AYM35_RS04680 SM00382 ATPases associated with a variety of cellular activities AYM35_RS04720 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS04735 SM01040 BRO family, N-terminal domain AYM35_RS04780 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05010 SM00047 Lysozyme subfamily 2 AYM35_RS05030 SM00287 Bacterial SH3 domain homologues AYM35_RS05030 SM00644 AYM35_RS05030 AYM35_RS05085 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS05230 SM01298 AYM35_RS05230 AYM35_RS05240 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS05255 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYM35_RS05345 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05345 SM01086 C-terminal, D2-small domain, of ClpB protein AYM35_RS05390 SM00825 Beta-ketoacyl synthase AYM35_RS05410 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05415 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05430 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05435 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05490 SM01118 AYM35_RS05490 AYM35_RS05500 SM00954 Region found in RelA / SpoT proteins AYM35_RS05515 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM35_RS05515 SM00924 MgtE intracellular N domain AYM35_RS05580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM35_RS05610 SM00914 AYM35_RS05610 AYM35_RS05655 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05755 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS05765 SM00047 Lysozyme subfamily 2 AYM35_RS05765 SM00644 AYM35_RS05765 AYM35_RS05830 SM01001 AIR carboxylase AYM35_RS05850 SM01211 AYM35_RS05850 AYM35_RS05875 SM00798 AICARFT/IMPCHase bienzyme AYM35_RS05875 SM00851 MGS-like domain AYM35_RS05880 SM01209 AYM35_RS05880 AYM35_RS05880 SM01210 AYM35_RS05880 AYM35_RS05890 SM00382 ATPases associated with a variety of cellular activities AYM35_RS05965 SM00849 Metallo-beta-lactamase superfamily AYM35_RS05995 SM00861 Transketolase, pyrimidine binding domain AYM35_RS06015 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS06020 SM00382 ATPases associated with a variety of cellular activities AYM35_RS06070 SM00838 Elongation factor G C-terminus AYM35_RS06095 SM00878 Biotin carboxylase C-terminal domain AYM35_RS06175 SM00725 NEAr Transporter domain AYM35_RS06180 SM00725 NEAr Transporter domain AYM35_RS06185 SM00725 NEAr Transporter domain AYM35_RS06220 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYM35_RS06230 SM00873 B3/4 domain AYM35_RS06230 SM00874 tRNA synthetase B5 domain AYM35_RS06230 SM00896 Ferredoxin-fold anticodon binding domain AYM35_RS06255 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM35_RS06255 SM00481 DNA polymerase alpha chain like domain AYM35_RS06255 SM00483 DNA polymerase X family AYM35_RS06260 SM00463 Small MutS-related domain AYM35_RS06260 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYM35_RS06260 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM35_RS06275 SM00465 GIY-YIG type nucleases (URI domain) AYM35_RS06475 SM00740 AYM35_RS06475 AYM35_RS06495 SM00842 Cell division protein FtsA AYM35_RS06500 SM00864 Tubulin/FtsZ family, GTPase domain AYM35_RS06500 SM00865 Tubulin/FtsZ family, C-terminal domain AYM35_RS06525 SM00363 S4 RNA-binding domain AYM35_RS06555 SM00363 S4 RNA-binding domain AYM35_RS06580 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AYM35_RS06585 SM00851 MGS-like domain AYM35_RS06585 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYM35_RS06585 SM01209 AYM35_RS06585 AYM35_RS06590 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYM35_RS06615 SM00072 Guanylate kinase homologues. AYM35_RS06620 SM01409 AYM35_RS06620 AYM35_RS06630 SM00487 DEAD-like helicases superfamily AYM35_RS06630 SM00490 helicase superfamily c-terminal domain AYM35_RS06665 SM00331 Sigma factor PP2C-like phosphatases AYM35_RS06665 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AYM35_RS06670 SM00220 Serine/Threonine protein kinases, catalytic domain AYM35_RS06670 SM00740 AYM35_RS06670 AYM35_RS06685 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AYM35_RS06700 SM01120 AYM35_RS06700 AYM35_RS06700 SM01121 AYM35_RS06700 AYM35_RS06705 SM00487 DEAD-like helicases superfamily AYM35_RS06705 SM00490 helicase superfamily c-terminal domain AYM35_RS06720 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYM35_RS06725 SM00822 AYM35_RS06725 AYM35_RS06740 SM00358 Double-stranded RNA binding motif AYM35_RS06740 SM00535 Ribonuclease III family AYM35_RS06745 SM00968 SMC proteins Flexible Hinge Domain AYM35_RS06750 SM00382 ATPases associated with a variety of cellular activities AYM35_RS06750 SM00962 SRP54-type protein, GTPase domain AYM35_RS06750 SM00963 SRP54-type protein, helical bundle domain AYM35_RS06760 SM00382 ATPases associated with a variety of cellular activities AYM35_RS06760 SM00962 SRP54-type protein, GTPase domain AYM35_RS06760 SM00963 SRP54-type protein, helical bundle domain AYM35_RS06805 SM00881 CoA binding domain AYM35_RS06810 SM00257 Lysin motif AYM35_RS06825 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYM35_RS06825 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYM35_RS06825 SM00493 AYM35_RS06825 AYM35_RS06845 SM00382 ATPases associated with a variety of cellular activities AYM35_RS06845 SM01086 C-terminal, D2-small domain, of ClpB protein AYM35_RS06905 SM00479 AYM35_RS06905 AYM35_RS06905 SM00481 DNA polymerase alpha chain like domain AYM35_RS06920 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS06920 SM00322 K homology RNA-binding domain AYM35_RS06950 SM00904 Riboflavin kinase AYM35_RS06955 SM01387 AYM35_RS06955 AYM35_RS06960 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS06960 SM00322 K homology RNA-binding domain AYM35_RS06970 SM00849 Metallo-beta-lactamase superfamily AYM35_RS06975 SM00382 ATPases associated with a variety of cellular activities AYM35_RS06975 SM00843 AYM35_RS06975 AYM35_RS06980 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS06980 SM00866 AYM35_RS06980 AYM35_RS07005 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS07015 SM00852 Probable molybdopterin binding domain AYM35_RS07020 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07025 SM00322 K homology RNA-binding domain AYM35_RS07025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS07055 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS07070 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYM35_RS07070 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM35_RS07075 SM00853 MutL C terminal dimerisation domain AYM35_RS07075 SM01340 AYM35_RS07075 AYM35_RS07130 SM00422 helix_turn_helix, mercury resistance AYM35_RS07135 SM01230 AYM35_RS07135 AYM35_RS07245 SM00155 Phospholipase D. Active site motifs. AYM35_RS07250 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07265 SM00421 helix_turn_helix, Lux Regulon AYM35_RS07265 SM00448 cheY-homologous receiver domain AYM35_RS07275 SM00318 Staphylococcal nuclease homologues AYM35_RS07330 SM01060 AYM35_RS07330 AYM35_RS07345 SM01240 AYM35_RS07345 AYM35_RS07375 SM00861 Transketolase, pyrimidine binding domain AYM35_RS07445 SM01207 AYM35_RS07445 AYM35_RS07450 SM00387 Histidine kinase-like ATPases AYM35_RS07450 SM00433 TopoisomeraseII AYM35_RS07455 SM00434 DNA Topoisomerase IV AYM35_RS07470 SM01061 CAT RNA binding domain AYM35_RS07575 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07580 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07615 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07645 SM00382 ATPases associated with a variety of cellular activities AYM35_RS07660 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYM35_RS07665 SM01130 AYM35_RS07665 AYM35_RS07685 SM01005 Alanine racemase, C-terminal domain AYM35_RS07700 SM00357 Cold shock protein domain AYM35_RS07740 SM00327 von Willebrand factor (vWF) type A domain AYM35_RS07765 SM00861 Transketolase, pyrimidine binding domain AYM35_RS07770 SM00387 Histidine kinase-like ATPases AYM35_RS07770 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS07775 SM00448 cheY-homologous receiver domain AYM35_RS07775 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS07790 SM01321 AYM35_RS07790 AYM35_RS07795 SM00014 Acid phosphatase homologues AYM35_RS07810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM35_RS07810 SM00245 tail specific protease AYM35_RS07855 SM00567 E-Z type HEAT repeats AYM35_RS07855 SM00932 Scaffold protein Nfu/NifU N terminal AYM35_RS07860 SM00932 Scaffold protein Nfu/NifU N terminal AYM35_RS07885 SM00844 GA module AYM35_RS07905 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYM35_RS07905 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYM35_RS07910 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYM35_RS07910 SM00475 5'-3' exonuclease AYM35_RS07930 SM00981 AYM35_RS07930 AYM35_RS07975 SM00478 endonuclease III AYM35_RS07975 SM00525 AYM35_RS07975 AYM35_RS07990 SM00479 AYM35_RS07990 AYM35_RS07990 SM00491 AYM35_RS07990 AYM35_RS08025 SM00914 AYM35_RS08025 AYM35_RS08030 SM00028 Tetratricopeptide repeats AYM35_RS08055 SM00562 AYM35_RS08055 AYM35_RS08080 SM00411 bacterial (prokaryotic) histone like domain AYM35_RS08095 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS08120 SM00870 AYM35_RS08120 AYM35_RS08135 SM00257 Lysin motif AYM35_RS08140 SM00487 DEAD-like helicases superfamily AYM35_RS08140 SM00490 helicase superfamily c-terminal domain AYM35_RS08200 SM00287 Bacterial SH3 domain homologues AYM35_RS08200 SM00646 AYM35_RS08200 AYM35_RS08280 SM00635 Bacterial Ig-like domain 2 AYM35_RS08335 SM00507 HNH nucleases AYM35_RS08345 SM00487 DEAD-like helicases superfamily AYM35_RS08350 SM00990 AYM35_RS08350 AYM35_RS08435 SM00482 DNA polymerase A domain AYM35_RS08490 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS08495 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS08545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM35_RS08545 SM00387 Histidine kinase-like ATPases AYM35_RS08545 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS08550 SM00448 cheY-homologous receiver domain AYM35_RS08550 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS08555 SM00363 S4 RNA-binding domain AYM35_RS08620 SM00342 helix_turn_helix, arabinose operon control protein AYM35_RS08620 SM00871 Bacterial transcription activator, effector binding domain AYM35_RS08625 SM00642 Alpha-amylase domain AYM35_RS08630 SM00354 helix_turn _helix lactose operon repressor AYM35_RS08645 SM01350 AYM35_RS08645 AYM35_RS08675 SM00861 Transketolase, pyrimidine binding domain AYM35_RS08725 SM00878 Biotin carboxylase C-terminal domain AYM35_RS08735 SM00841 Elongation factor P, C-terminal AYM35_RS08735 SM01185 AYM35_RS08735 AYM35_RS08760 SM00450 Rhodanese Homology Domain AYM35_RS08820 SM00849 Metallo-beta-lactamase superfamily AYM35_RS08875 SM00382 ATPases associated with a variety of cellular activities AYM35_RS08880 SM00518 AP endonuclease family 2 AYM35_RS08885 SM00487 DEAD-like helicases superfamily AYM35_RS08885 SM00490 helicase superfamily c-terminal domain AYM35_RS08905 SM00400 zinc finger AYM35_RS08905 SM00493 AYM35_RS08905 AYM35_RS08915 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM35_RS08975 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS08990 SM00271 DnaJ molecular chaperone homology domain AYM35_RS09010 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS09020 SM00838 Elongation factor G C-terminus AYM35_RS09035 SM00849 Metallo-beta-lactamase superfamily AYM35_RS09045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM35_RS09060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS09070 SM01103 AYM35_RS09070 AYM35_RS09120 SM00878 Biotin carboxylase C-terminal domain AYM35_RS09130 SM00797 Allophanate hydrolase subunit 2 AYM35_RS09135 SM00796 Allophanate hydrolase subunit 1 AYM35_RS09170 SM00732 Likely ribonuclease with RNase H fold. AYM35_RS09180 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYM35_RS09185 SM00382 ATPases associated with a variety of cellular activities AYM35_RS09190 SM00028 Tetratricopeptide repeats AYM35_RS09230 SM00382 ATPases associated with a variety of cellular activities AYM35_RS09260 SM00287 Bacterial SH3 domain homologues AYM35_RS09260 SM00646 AYM35_RS09260 AYM35_RS09270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS09270 SM00954 Region found in RelA / SpoT proteins AYM35_RS09290 SM01323 AYM35_RS09290 AYM35_RS09305 SM00382 ATPases associated with a variety of cellular activities AYM35_RS09310 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM35_RS09415 SM01004 Delta-aminolevulinic acid dehydratase AYM35_RS09445 SM00382 ATPases associated with a variety of cellular activities AYM35_RS09445 SM00994 ClpX C4-type zinc finger AYM35_RS09445 SM01086 C-terminal, D2-small domain, of ClpB protein AYM35_RS09495 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYM35_RS09520 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYM35_RS09530 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AYM35_RS09530 SM01232 AYM35_RS09530 AYM35_RS09535 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYM35_RS09535 SM00474 3'-5' exonuclease AYM35_RS09535 SM00475 5'-3' exonuclease AYM35_RS09535 SM00482 DNA polymerase A domain AYM35_RS09545 SM00387 Histidine kinase-like ATPases AYM35_RS09545 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS09550 SM00448 cheY-homologous receiver domain AYM35_RS09550 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS09560 SM01329 AYM35_RS09560 AYM35_RS09600 SM00919 Malic enzyme, NAD binding domain AYM35_RS09600 SM01274 AYM35_RS09600 AYM35_RS09605 SM00481 DNA polymerase alpha chain like domain AYM35_RS09615 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM35_RS09625 SM00849 Metallo-beta-lactamase superfamily AYM35_RS09640 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYM35_RS09640 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYM35_RS09670 SM00981 AYM35_RS09670 AYM35_RS09690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYM35_RS09695 SM00363 S4 RNA-binding domain AYM35_RS09695 SM01390 AYM35_RS09695 AYM35_RS09740 SM00563 Phosphate acyltransferases AYM35_RS09745 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYM35_RS09750 SM00363 S4 RNA-binding domain AYM35_RS09765 SM00725 NEAr Transporter domain AYM35_RS09790 SM00354 helix_turn _helix lactose operon repressor AYM35_RS09800 SM00830 Chorismate mutase type II AYM35_RS09825 SM00843 AYM35_RS09825 AYM35_RS09855 SM00849 Metallo-beta-lactamase superfamily AYM35_RS09895 SM00363 S4 RNA-binding domain AYM35_RS09915 SM00450 Rhodanese Homology Domain AYM35_RS09930 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS09940 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS09995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYM35_RS10005 SM00226 Low molecular weight phosphatase family AYM35_RS10010 SM00047 Lysozyme subfamily 2 AYM35_RS10100 SM01234 AYM35_RS10100 AYM35_RS10120 SM00894 Excalibur calcium-binding domain AYM35_RS10260 SM00382 ATPases associated with a variety of cellular activities AYM35_RS10275 SM01260 AYM35_RS10275 AYM35_RS10405 SM00382 ATPases associated with a variety of cellular activities AYM35_RS10435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS10470 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS10475 SM00421 helix_turn_helix, Lux Regulon AYM35_RS10475 SM00448 cheY-homologous receiver domain AYM35_RS10530 SM00382 ATPases associated with a variety of cellular activities AYM35_RS10535 SM00062 Bacterial periplasmic substrate-binding proteins AYM35_RS10730 SM00382 ATPases associated with a variety of cellular activities AYM35_RS10740 SM00478 endonuclease III AYM35_RS10810 SM00226 Low molecular weight phosphatase family AYM35_RS10825 SM00421 helix_turn_helix, Lux Regulon AYM35_RS10825 SM00448 cheY-homologous receiver domain AYM35_RS10830 SM00387 Histidine kinase-like ATPases AYM35_RS10890 SM00479 AYM35_RS10890 AYM35_RS10910 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYM35_RS10925 SM00845 GatB domain AYM35_RS10950 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYM35_RS10950 SM00292 breast cancer carboxy-terminal domain AYM35_RS10950 SM00532 Ligase N family AYM35_RS10970 SM00998 Adenylosuccinate lyase C-terminus AYM35_RS11030 SM00710 Parallel beta-helix repeats AYM35_RS11040 SM01131 AYM35_RS11040 AYM35_RS11100 SM00382 ATPases associated with a variety of cellular activities AYM35_RS11110 SM00382 ATPases associated with a variety of cellular activities AYM35_RS11115 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS11175 SM00287 Bacterial SH3 domain homologues AYM35_RS11255 SM00635 Bacterial Ig-like domain 2 AYM35_RS11315 SM00507 HNH nucleases AYM35_RS11460 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS11470 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS11475 SM00479 AYM35_RS11475 AYM35_RS11575 SM00883 Chaperonin 10 Kd subunit AYM35_RS11610 SM00793 Accessory gene regulator B AYM35_RS11615 SM00794 Staphylococcal AgrD protein AYM35_RS11625 SM00448 cheY-homologous receiver domain AYM35_RS11625 SM00850 LytTr DNA-binding domain AYM35_RS11640 SM00640 Glycosyl hydrolases family 32 AYM35_RS11645 SM00354 helix_turn _helix lactose operon repressor AYM35_RS11665 SM00881 CoA binding domain AYM35_RS11670 SM00382 ATPases associated with a variety of cellular activities AYM35_RS11680 SM00534 ATPase domain of DNA mismatch repair MUTS family AYM35_RS11730 SM00917 LeuA allosteric (dimerisation) domain AYM35_RS11735 SM01329 AYM35_RS11735 AYM35_RS11795 SM00731 SprT homologues. AYM35_RS11800 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS11800 SM00732 Likely ribonuclease with RNase H fold. AYM35_RS11820 SM00331 Sigma factor PP2C-like phosphatases AYM35_RS11820 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AYM35_RS11840 SM01005 Alanine racemase, C-terminal domain AYM35_RS11885 SM00387 Histidine kinase-like ATPases AYM35_RS11885 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS11890 SM00448 cheY-homologous receiver domain AYM35_RS11890 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS11895 SM00487 DEAD-like helicases superfamily AYM35_RS11895 SM00490 helicase superfamily c-terminal domain AYM35_RS11930 SM00155 Phospholipase D. Active site motifs. AYM35_RS11935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYM35_RS12020 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12080 SM00226 Low molecular weight phosphatase family AYM35_RS12095 SM00937 AYM35_RS12095 AYM35_RS12115 SM00357 Cold shock protein domain AYM35_RS12115 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12115 SM00959 Rho termination factor, N-terminal domain AYM35_RS12190 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AYM35_RS12200 SM01133 AYM35_RS12200 AYM35_RS12240 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYM35_RS12280 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12505 SM00829 Enoylreductase AYM35_RS12510 SM00829 Enoylreductase AYM35_RS12535 SM01133 AYM35_RS12535 AYM35_RS12550 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM35_RS12550 SM01134 AYM35_RS12550 AYM35_RS12580 SM00422 helix_turn_helix, mercury resistance AYM35_RS12635 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12675 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12680 SM00382 ATPases associated with a variety of cellular activities AYM35_RS12690 SM00662 RNA polymerases D AYM35_RS12710 SM00316 Ribosomal protein S1-like RNA-binding domain AYM35_RS12765 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYM35_RS12770 SM01374 AYM35_RS12770 AYM35_RS12790 SM00322 K homology RNA-binding domain AYM35_RS12805 SM01382 AYM35_RS12805 AYM35_RS12805 SM01383 AYM35_RS12805 AYM35_RS12825 SM01403 AYM35_RS12825 AYM35_RS12840 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYM35_RS12840 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYM35_RS12840 SM00493 AYM35_RS12840 AYM35_RS12900 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS12930 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS12955 SM00852 Probable molybdopterin binding domain AYM35_RS12965 SM00852 Probable molybdopterin binding domain AYM35_RS12975 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13040 SM00988 UreE urease accessory protein, N-terminal domain AYM35_RS13130 SM00047 Lysozyme subfamily 2 AYM35_RS13145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYM35_RS13145 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYM35_RS13160 SM00420 helix_turn_helix, Deoxyribose operon repressor AYM35_RS13315 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13405 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS13425 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13435 SM00448 cheY-homologous receiver domain AYM35_RS13435 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS13440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYM35_RS13440 SM00387 Histidine kinase-like ATPases AYM35_RS13440 SM00388 His Kinase A (phosphoacceptor) domain AYM35_RS13445 SM00850 LytTr DNA-binding domain AYM35_RS13480 SM00829 Enoylreductase AYM35_RS13535 SM00342 helix_turn_helix, arabinose operon control protein AYM35_RS13560 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS13585 SM00422 helix_turn_helix, mercury resistance AYM35_RS13590 SM00421 helix_turn_helix, Lux Regulon AYM35_RS13590 SM00448 cheY-homologous receiver domain AYM35_RS13595 SM00387 Histidine kinase-like ATPases AYM35_RS13620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYM35_RS13700 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13710 SM00062 Bacterial periplasmic substrate-binding proteins AYM35_RS13710 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AYM35_RS13730 SM00855 Phosphoglycerate mutase family AYM35_RS13790 SM00729 Elongator protein 3, MiaB family, Radical SAM AYM35_RS13790 SM00876 Biotin and Thiamin Synthesis associated domain AYM35_RS13815 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13820 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13860 SM00871 Bacterial transcription activator, effector binding domain AYM35_RS13940 SM00116 Domain in cystathionine beta-synthase and other proteins. AYM35_RS13940 SM00382 ATPases associated with a variety of cellular activities AYM35_RS13990 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14035 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14040 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14175 SM00487 DEAD-like helicases superfamily AYM35_RS14175 SM00490 helicase superfamily c-terminal domain AYM35_RS14265 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYM35_RS14265 SM00895 AYM35_RS14265 AYM35_RS14270 SM00422 helix_turn_helix, mercury resistance AYM35_RS14275 SM00954 Region found in RelA / SpoT proteins AYM35_RS14310 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS14320 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14350 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS14380 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14515 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14515 SM01086 C-terminal, D2-small domain, of ClpB protein AYM35_RS14530 SM00899 AYM35_RS14530 AYM35_RS14555 SM01266 AYM35_RS14555 AYM35_RS14760 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AYM35_RS14945 SM00382 ATPases associated with a variety of cellular activities AYM35_RS14950 SM00387 Histidine kinase-like ATPases AYM35_RS14955 SM00448 cheY-homologous receiver domain AYM35_RS14955 SM00862 Transcriptional regulatory protein, C terminal AYM35_RS14965 SM00098 Alkaline phosphatase homologues AYM35_RS14975 SM00347 helix_turn_helix multiple antibiotic resistance protein AYM35_RS15060 SM00047 Lysozyme subfamily 2 AYM35_RS15085 SM00957 SecA DEAD-like domain AYM35_RS15085 SM00958 SecA preprotein cross-linking domain AYM35_RS15115 SM00903 Flavin reductase like domain AYM35_RS15135 SM00903 Flavin reductase like domain AYM35_RS15270 SM00382 ATPases associated with a variety of cellular activities AYM35_RS15285 SM00867 YceI-like domain AYM35_RS15295 SM00450 Rhodanese Homology Domain AYM35_RS15350 SM00382 ATPases associated with a variety of cellular activities AYM35_RS15385 SM00357 Cold shock protein domain AYM35_RS15390 SM00530 Helix-turn-helix XRE-family like proteins AYM35_RS15410 SM00470 ParB-like nuclease domain AYM35_RS15420 SM01228 AYM35_RS15420 AYM35_RS15450 SM00760 Bacterial dnaA protein helix-turn-helix domain AYM35_RS15590 SM00788 Adenylosuccinate synthetase