locus-tag	class	description
DKK89_RS00035	COG2205	protein histidine kinase activity
DKK89_RS00040	COG0745	RESPONSE REGULATOR receiver
DKK89_RS00060	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DKK89_RS00070	COG0772	Belongs to the SEDS family
DKK89_RS00085	COG1937	Protein conserved in bacteria
DKK89_RS00095	COG1418	mRNA catabolic process
DKK89_RS00150	COG0629	single-stranded DNA binding
DKK89_RS00225	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DKK89_RS00250	COG0009	L-threonylcarbamoyladenylate synthase
DKK89_RS00255	COG2890	protein-(glutamine-N5) methyltransferase activity
DKK89_RS00280	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DKK89_RS00320	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKK89_RS00370	COG0813	purine-nucleoside phosphorylase activity
DKK89_RS00375	COG0783	Belongs to the Dps family
DKK89_RS00395	COG1482	cell wall glycoprotein biosynthetic process
DKK89_RS00400	COG0702	epimerase
DKK89_RS00405	COG0640	Transcriptional regulator
DKK89_RS00440	COG0561	phosphatase activity
DKK89_RS00445	COG1119	ATPase activity
DKK89_RS00460	COG3711	transcriptional antiterminator
DKK89_RS00490	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DKK89_RS00550	COG0489	protein tyrosine kinase activity
DKK89_RS00555	COG2814	Major facilitator Superfamily
DKK89_RS00570	COG1272	protein, Hemolysin III
DKK89_RS00580	COG1988	membrane-bound metal-dependent
DKK89_RS00590	COG3314	Sporulation integral membrane protein YlbJ
DKK89_RS00595	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS00600	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS00605	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DKK89_RS00615	COG3457	Alanine racemase
DKK89_RS00620	COG4264	IucA IucC family
DKK89_RS00625	COG2814	Major facilitator Superfamily
DKK89_RS00650	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKK89_RS00660	COG2130	NADP-dependent
DKK89_RS00725	COG0656	L-ascorbic acid biosynthetic process
DKK89_RS00730	COG0789	Transcriptional regulator
DKK89_RS00740	COG5492	domain, Protein
DKK89_RS00760	COG3527	Alpha-acetolactate decarboxylase
DKK89_RS00765	COG0028	Belongs to the TPP enzyme family
DKK89_RS00890	COG0201	protein transport
DKK89_RS01005	COG2252	PERMEase
DKK89_RS01055	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKK89_RS01125	COG1763	Mo-molybdopterin cofactor biosynthetic process
DKK89_RS01145	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DKK89_RS01150	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
DKK89_RS01155	COG4149	molybdate abc transporter
DKK89_RS01160	COG0725	ABC transporter, periplasmic molybdate-binding protein
DKK89_RS01175	COG1268	BioY protein
DKK89_RS01190	COG1960	acyl-CoA dehydrogenase activity
DKK89_RS01195	COG4413	Urea transporter
DKK89_RS01260	COG3942	CHAP domain
DKK89_RS01270	COG1757	Na H antiporter
DKK89_RS01285	COG3942	CHAP domain
DKK89_RS01355	COG1113	amino acid transport
DKK89_RS01375	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DKK89_RS01380	COG0385	Bile acid
DKK89_RS01390	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS01390	COG1263	PTS System
DKK89_RS01395	COG1737	Transcriptional regulator
DKK89_RS01415	COG1028	Short-chain dehydrogenase reductase Sdr
DKK89_RS01420	COG1473	amidohydrolase
DKK89_RS01435	COG0583	DNA-binding transcription factor activity
DKK89_RS01460	COG2258	MOSC domain
DKK89_RS01480	COG1668	transmembrane transport
DKK89_RS01485	COG4152	abc transporter atp-binding protein
DKK89_RS01490	COG3152	Membrane
DKK89_RS01510	COG0786	glutamate:sodium symporter activity
DKK89_RS01520	COG0598	Magnesium transport protein CorA
DKK89_RS01535	COG0657	acetylesterase activity
DKK89_RS01545	COG2814	Major facilitator Superfamily
DKK89_RS01550	COG1566	PFAM secretion protein HlyD family protein
DKK89_RS01560	COG2814	Major facilitator Superfamily
DKK89_RS01625	COG1620	l-lactate permease
DKK89_RS01645	COG0604	alcohol dehydrogenase
DKK89_RS01675	COG1511	domain protein
DKK89_RS01690	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS01690	COG1263	PTS System
DKK89_RS01705	COG3871	stress protein (general stress protein 26)
DKK89_RS01745	COG0789	Transcriptional regulator
DKK89_RS01765	COG2181	nitrate reductase activity
DKK89_RS01775	COG1140	nitrate reductase beta subunit
DKK89_RS01780	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
DKK89_RS01790	COG2146	nitrite reductase [NAD(P)H] activity
DKK89_RS01795	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKK89_RS01805	COG0454	-acetyltransferase
DKK89_RS01810	COG2116	formate transmembrane transporter activity
DKK89_RS01825	COG3443	Belongs to the bacterial solute-binding protein 9 family
DKK89_RS01825	COG0803	Belongs to the bacterial solute-binding protein 9 family
DKK89_RS01865	COG1126	abc transporter atp-binding protein
DKK89_RS01870	COG0765	amino acid transport
DKK89_RS01875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKK89_RS01880	COG2814	Major facilitator Superfamily
DKK89_RS01900	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DKK89_RS01950	COG0156	8-amino-7-oxononanoate synthase activity
DKK89_RS01960	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DKK89_RS01965	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DKK89_RS01980	COG1132	(ABC) transporter
DKK89_RS01985	COG2375	cellular response to nickel ion
DKK89_RS01985	COG1132	(ABC) transporter
DKK89_RS02005	COG1929	Belongs to the glycerate kinase type-1 family
DKK89_RS02015	COG2814	Major facilitator Superfamily
DKK89_RS02035	COG1113	amino acid transport
DKK89_RS02050	COG0531	amino acid
DKK89_RS02075	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DKK89_RS02085	COG1174	glycine betaine transport
DKK89_RS02095	COG1174	glycine betaine transport
DKK89_RS02115	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
DKK89_RS02125	COG0531	amino acid
DKK89_RS02130	COG2272	Belongs to the type-B carboxylesterase lipase family
DKK89_RS02135	COG2814	Major facilitator Superfamily
DKK89_RS02140	COG0390	transport system, permease component
DKK89_RS02145	COG4619	ABC transporter
DKK89_RS02150	COG1363	Peptidase, m42
DKK89_RS02170	COG4808	Protein conserved in bacteria
DKK89_RS02175	COG0069	glutamate synthase activity
DKK89_RS02230	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DKK89_RS02235	COG1028	Short-chain dehydrogenase reductase Sdr
DKK89_RS02240	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
DKK89_RS02245	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKK89_RS02340	COG0494	nUDIX hydrolase
DKK89_RS02385	COG1846	Transcriptional regulator
DKK89_RS02420	COG1070	Carbohydrate kinase
DKK89_RS02425	COG1802	Transcriptional regulator
DKK89_RS02430	COG0789	Transcriptional regulator
DKK89_RS02435	COG2357	RelA SpoT domain protein
DKK89_RS02440	COG4876	unkown
DKK89_RS02450	COG2271	Major facilitator Superfamily
DKK89_RS02455	COG0586	Pfam SNARE associated Golgi protein
DKK89_RS02475	COG1131	(ABC) transporter
DKK89_RS02495	COG0400	carboxylic ester hydrolase activity
DKK89_RS02500	COG0346	lactoylglutathione lyase activity
DKK89_RS02505	COG1846	Transcriptional regulator
DKK89_RS02515	COG2514	catechol 2,3-dioxygenase activity
DKK89_RS02530	COG0561	phosphatase activity
DKK89_RS02535	COG1131	(ABC) transporter
DKK89_RS02545	COG3764	Sortase (surface protein transpeptidase)
DKK89_RS02565	COG1760	l-serine dehydratase
DKK89_RS02570	COG1760	l-serine dehydratase
DKK89_RS02585	COG0697	spore germination
DKK89_RS02590	COG0657	acetylesterase activity
DKK89_RS02610	COG0028	Belongs to the TPP enzyme family
DKK89_RS02625	COG0583	DNA-binding transcription factor activity
DKK89_RS02635	COG3942	CHAP domain
DKK89_RS02645	COG3425	synthase
DKK89_RS02650	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKK89_RS02675	COG2409	Drug exporters of the RND superfamily
DKK89_RS02720	COG0436	Aminotransferase
DKK89_RS02750	COG3942	CHAP domain
DKK89_RS02755	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DKK89_RS02755	COG2755	lipolytic protein G-D-S-L family
DKK89_RS02865	COG3001	Fructosamine kinase
DKK89_RS02870	COG0167	dihydroorotate dehydrogenase activity
DKK89_RS02975	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DKK89_RS02980	COG3527	Alpha-acetolactate decarboxylase
DKK89_RS02995	COG0531	amino acid
DKK89_RS03025	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKK89_RS03045	COG1012	belongs to the aldehyde dehydrogenase family
DKK89_RS03055	COG1510	regulation of RNA biosynthetic process
DKK89_RS03060	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKK89_RS03085	COG2851	Citrate transporter
DKK89_RS03100	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
DKK89_RS03110	COG0386	Belongs to the glutathione peroxidase family
DKK89_RS03135	COG1136	(ABC) transporter
DKK89_RS03140	COG2205	protein histidine kinase activity
DKK89_RS03145	COG0745	RESPONSE REGULATOR receiver
DKK89_RS03155	COG1785	Belongs to the alkaline phosphatase family
DKK89_RS03165	COG1846	Transcriptional regulator
DKK89_RS03210	COG1438	arginine binding
DKK89_RS03230	COG3711	transcriptional antiterminator
DKK89_RS03230	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKK89_RS03235	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKK89_RS03235	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKK89_RS03235	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKK89_RS03240	COG1482	cell wall glycoprotein biosynthetic process
DKK89_RS03250	COG3942	CHAP domain
DKK89_RS03250	COG1705	Flagellar rod assembly protein muramidase FlgJ
DKK89_RS03255	COG3433	isochorismatase activity
DKK89_RS03255	COG1535	isochorismatase
DKK89_RS03270	COG0438	transferase activity, transferring glycosyl groups
DKK89_RS03285	COG1073	alpha beta
DKK89_RS03305	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKK89_RS03325	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKK89_RS03420	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DKK89_RS03505	COG0471	metal ion transport
DKK89_RS03510	COG2962	Rard protein
DKK89_RS03520	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
DKK89_RS03535	COG1136	(ABC) transporter
DKK89_RS03540	COG0577	efflux transmembrane transporter activity
DKK89_RS03550	COG1278	Cold shock
DKK89_RS03575	COG1475	DNA binding
DKK89_RS03615	COG2501	S4 domain
DKK89_RS03635	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DKK89_RS03665	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DKK89_RS03675	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
DKK89_RS03685	COG0305	Participates in initiation and elongation during chromosome replication
DKK89_RS03720	COG4863	YycH protein
DKK89_RS03730	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DKK89_RS03735	COG0737	Belongs to the 5'-nucleotidase family
DKK89_RS03795	COG0584	glycerophosphoryl diester phosphodiesterase
DKK89_RS03800	COG2030	dehydratase
DKK89_RS03825	COG1940	carbohydrate kinase activity
DKK89_RS03825	COG1846	Transcriptional regulator
DKK89_RS03835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKK89_RS03840	COG2210	Belongs to the sulfur carrier protein TusA family
DKK89_RS03845	COG1937	Protein conserved in bacteria
DKK89_RS03850	COG0730	response to heat
DKK89_RS03860	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DKK89_RS03900	COG2003	Belongs to the UPF0758 family
DKK89_RS03955	COG0745	RESPONSE REGULATOR receiver
DKK89_RS03960	COG2205	protein histidine kinase activity
DKK89_RS04035	COG0730	response to heat
DKK89_RS04040	COG1937	Protein conserved in bacteria
DKK89_RS04045	COG2210	Belongs to the sulfur carrier protein TusA family
DKK89_RS04050	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKK89_RS04105	COG0823	Involved in the tonB-independent uptake of proteins
DKK89_RS04140	COG1473	amidohydrolase
DKK89_RS04150	COG1283	sodium-dependent phosphate transmembrane transporter activity
DKK89_RS04155	COG4716	Myosin-crossreactive antigen
DKK89_RS04160	COG0697	spore germination
DKK89_RS04175	COG1620	l-lactate permease
DKK89_RS04195	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS04200	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS04205	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DKK89_RS04215	COG2423	ornithine cyclodeaminase activity
DKK89_RS04220	COG4264	IucA IucC family
DKK89_RS04225	COG2814	Major facilitator Superfamily
DKK89_RS04230	COG4264	IucA IucC family
DKK89_RS04235	COG4264	IucA IucC family
DKK89_RS04245	COG0019	diaminopimelate decarboxylase activity
DKK89_RS04250	COG1475	DNA binding
DKK89_RS04275	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKK89_RS04280	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DKK89_RS04285	COG0438	transferase activity, transferring glycosyl groups
DKK89_RS04320	COG0813	purine-nucleoside phosphorylase activity
DKK89_RS04325	COG2814	Major facilitator Superfamily
DKK89_RS04345	COG3639	organic phosphonate transmembrane transporter activity
DKK89_RS04365	COG0737	Belongs to the 5'-nucleotidase family
DKK89_RS04380	COG1012	belongs to the aldehyde dehydrogenase family
DKK89_RS04380	COG1454	alcohol dehydrogenase
DKK89_RS04405	COG1086	Polysaccharide biosynthesis protein
DKK89_RS04415	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DKK89_RS04445	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DKK89_RS04455	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DKK89_RS04460	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DKK89_RS04470	COG2832	Protein of unknown function (DUF454)
DKK89_RS04505	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKK89_RS04510	COG1960	acyl-CoA dehydrogenase activity
DKK89_RS04515	COG5609	conserved protein (DUF2294)
DKK89_RS04565	COG1114	Component of the transport system for branched-chain amino acids
DKK89_RS04570	COG1335	isochorismatase
DKK89_RS04575	COG3961	Belongs to the TPP enzyme family
DKK89_RS04605	COG1737	Transcriptional regulator
DKK89_RS04630	COG1136	(ABC) transporter
DKK89_RS04635	COG0577	efflux transmembrane transporter activity
DKK89_RS04635	COG1136	(ABC) transporter
DKK89_RS04655	COG1131	(ABC) transporter
DKK89_RS04670	COG0601	transmembrane transport
DKK89_RS04675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKK89_RS04685	COG0405	Gamma-glutamyltransferase
DKK89_RS04705	COG3842	ATPase activity
DKK89_RS04715	COG1175	transmembrane transport
DKK89_RS04720	COG3833	ABC-type maltose transport systems, permease component
DKK89_RS04725	COG0673	inositol 2-dehydrogenase activity
DKK89_RS04730	COG0673	inositol 2-dehydrogenase activity
DKK89_RS04740	COG1755	Isoprenylcysteine carboxyl methyltransferase
DKK89_RS04795	COG0183	Belongs to the thiolase family
DKK89_RS04805	COG1960	acyl-CoA dehydrogenase activity
DKK89_RS04810	COG0318	PFAM AMP-dependent synthetase and ligase
DKK89_RS04825	COG0747	negative chemotaxis
DKK89_RS04830	COG3189	MarR family transcriptional regulator
DKK89_RS04865	COG2190	(PTS) system
DKK89_RS04865	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS04865	COG1263	PTS System
DKK89_RS04870	COG1957	nucleoside hydrolase
DKK89_RS04890	COG3414	Phosphotransferase system galactitol-specific IIB component
DKK89_RS04895	COG3775	system Galactitol-specific IIC component
DKK89_RS04900	COG1063	alcohol dehydrogenase
DKK89_RS04910	COG1063	alcohol dehydrogenase
DKK89_RS04920	COG1063	alcohol dehydrogenase
DKK89_RS04925	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DKK89_RS04930	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DKK89_RS04940	COG1063	alcohol dehydrogenase
DKK89_RS04945	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DKK89_RS04980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKK89_RS04990	COG2190	(PTS) system
DKK89_RS04990	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS04990	COG1263	PTS System
DKK89_RS04995	COG2723	6-phospho-beta-galactosidase activity
DKK89_RS05005	COG2226	methyltransferase
DKK89_RS05060	COG1131	(ABC) transporter
DKK89_RS05080	COG3942	CHAP domain
DKK89_RS05080	COG1388	LysM domain
DKK89_RS05190	COG1114	Component of the transport system for branched-chain amino acids
DKK89_RS05200	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
DKK89_RS05210	COG0577	efflux transmembrane transporter activity
DKK89_RS05240	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKK89_RS05245	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DKK89_RS05270	COG3314	Sporulation integral membrane protein YlbJ
DKK89_RS05295	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKK89_RS05325	COG3037	sugar-specific permease SgaT UlaA
DKK89_RS05335	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKK89_RS05340	COG3711	transcriptional antiterminator
DKK89_RS05365	COG2271	Major facilitator Superfamily
DKK89_RS05370	COG0346	lactoylglutathione lyase activity
DKK89_RS05375	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKK89_RS05380	COG0431	NADPH-dependent FMN reductase
DKK89_RS05395	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKK89_RS05400	COG2822	iron ion transport
DKK89_RS05410	COG0672	)-iron permease
DKK89_RS05415	COG0805	protein transport
DKK89_RS05420	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DKK89_RS05430	COG1476	TRANSCRIPTIONal
DKK89_RS05440	COG1131	(ABC) transporter
DKK89_RS05470	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DKK89_RS05470	COG0646	methionine synthase
DKK89_RS05475	COG0626	cystathionine gamma-synthase activity
DKK89_RS05480	COG0626	cystathionine gamma-synthase activity
DKK89_RS05490	COG1475	DNA binding
DKK89_RS05495	COG0668	transmembrane transport
DKK89_RS05500	COG4481	Protein conserved in bacteria
DKK89_RS05505	COG0012	GTP binding
DKK89_RS05610	COG1823	symporter activity
DKK89_RS05645	COG2233	PERMEase
DKK89_RS05685	COG3759	membrane
DKK89_RS05845	COG0523	cobalamin synthesis protein
DKK89_RS05870	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKK89_RS05880	COG5609	conserved protein (DUF2294)
DKK89_RS05895	COG1647	Serine aminopeptidase, S33
DKK89_RS05900	COG0733	neurotransmitter:sodium symporter activity
DKK89_RS05905	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKK89_RS05910	COG0626	cystathionine gamma-synthase activity
DKK89_RS05920	COG2011	ABC-type metal ion transport system permease component
DKK89_RS05925	COG1464	Belongs to the NlpA lipoprotein family
DKK89_RS05960	COG0583	DNA-binding transcription factor activity
DKK89_RS05965	COG0067	glutamate synthase
DKK89_RS05965	COG0069	glutamate synthase activity
DKK89_RS05965	COG0070	glutamate synthase
DKK89_RS05970	COG0493	'glutamate synthase
DKK89_RS05980	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS05980	COG1263	PTS System
DKK89_RS05985	COG0366	Alpha amylase catalytic
DKK89_RS05990	COG2188	Transcriptional regulator
DKK89_RS06010	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DKK89_RS06050	COG1982	Orn Lys Arg decarboxylase major
DKK89_RS06060	COG3870	Protein conserved in bacteria
DKK89_RS06065	COG0470	DNA polymerase III
DKK89_RS06070	COG1774	PSP1 C-terminal conserved region
DKK89_RS06080	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
DKK89_RS06090	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DKK89_RS06100	COG0084	hydrolase, TatD family'
DKK89_RS06105	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DKK89_RS06115	COG4466	Protein conserved in bacteria
DKK89_RS06125	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DKK89_RS06130	COG0251	oxidation-reduction process
DKK89_RS06175	COG2244	polysaccharide biosynthetic process
DKK89_RS06180	COG3956	TIGRFAM MazG family protein
DKK89_RS06185	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DKK89_RS06195	COG1098	S1 RNA binding domain
DKK89_RS06210	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DKK89_RS06235	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DKK89_RS06330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKK89_RS06345	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKK89_RS06355	COG3880	PFAM UvrB UvrC protein
DKK89_RS06370	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DKK89_RS06375	COG4956	integral membrane protein (PIN domain superfamily)
DKK89_RS06400	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
DKK89_RS06460	COG2813	Specifically methylates the guanine in position
DKK89_RS06500	COG1473	amidohydrolase
DKK89_RS06530	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DKK89_RS06535	COG1428	Deoxynucleoside kinase
DKK89_RS06540	COG1428	Deoxynucleoside kinase
DKK89_RS06550	COG0561	phosphatase activity
DKK89_RS06595	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DKK89_RS06610	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
DKK89_RS06710	COG0095	Lipoate-protein ligase
DKK89_RS06715	COG0083	homoserine kinase activity
DKK89_RS06735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKK89_RS06770	COG0667	Aldo Keto reductase
DKK89_RS06780	COG0655	NAD(P)H dehydrogenase (quinone) activity
DKK89_RS06790	COG1078	dGTPase activity
DKK89_RS06825	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DKK89_RS06830	COG4139	cobalamin transport
DKK89_RS06880	COG4974	Belongs to the 'phage' integrase family
DKK89_RS06935	COG0803	Belongs to the bacterial solute-binding protein 9 family
DKK89_RS06940	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DKK89_RS06945	COG1121	(ABC) transporter
DKK89_RS06950	COG1321	iron dependent repressor
DKK89_RS06960	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
DKK89_RS06970	COG1682	transport, permease protein
DKK89_RS06975	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DKK89_RS06985	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DKK89_RS06990	COG1686	Belongs to the peptidase S11 family
DKK89_RS06995	COG1132	(ABC) transporter
DKK89_RS07000	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKK89_RS07010	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DKK89_RS07015	COG1120	ATPase activity
DKK89_RS07020	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS07025	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS07030	COG2376	Dihydroxyacetone kinase
DKK89_RS07040	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
DKK89_RS07050	COG3949	Membrane
DKK89_RS07075	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKK89_RS07090	COG1136	(ABC) transporter
DKK89_RS07095	COG0577	efflux transmembrane transporter activity
DKK89_RS07105	COG1392	Phosphate transport regulator
DKK89_RS07110	COG0306	phosphate transporter
DKK89_RS07115	COG1388	LysM domain
DKK89_RS07115	COG3942	CHAP domain
DKK89_RS07130	COG4977	sequence-specific DNA binding
DKK89_RS07130	COG1917	Cupin 2, conserved barrel domain protein
DKK89_RS07160	COG0583	DNA-binding transcription factor activity
DKK89_RS07165	COG2814	Major facilitator Superfamily
DKK89_RS07170	COG2839	Protein conserved in bacteria
DKK89_RS07200	COG1611	Belongs to the LOG family
DKK89_RS07220	COG4988	ABC transporter
DKK89_RS07225	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DKK89_RS07235	COG0523	cobalamin synthesis protein
DKK89_RS07240	COG4989	oxidoreductase activity
DKK89_RS07250	COG0471	metal ion transport
DKK89_RS07255	COG0415	Belongs to the DNA photolyase family
DKK89_RS07285	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DKK89_RS07290	COG1349	DNA-binding transcription factor activity
DKK89_RS07295	COG1105	Belongs to the carbohydrate kinase PfkB family
DKK89_RS07300	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKK89_RS07300	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKK89_RS07300	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKK89_RS07305	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DKK89_RS07310	COG1253	flavin adenine dinucleotide binding
DKK89_RS07315	COG0656	L-ascorbic acid biosynthetic process
DKK89_RS07320	COG0463	Glycosyl transferase, family 2
DKK89_RS07355	COG0720	synthase
DKK89_RS07365	COG0512	Glutamine amidotransferase of anthranilate synthase
DKK89_RS07365	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DKK89_RS07370	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DKK89_RS07400	COG0488	(ABC) transporter
DKK89_RS07405	COG0514	ATP-dependent DNA helicase (RecQ)
DKK89_RS07410	COG0517	IMP dehydrogenase activity
DKK89_RS07410	COG1125	glycine betaine transport
DKK89_RS07415	COG1174	glycine betaine transport
DKK89_RS07450	COG3104	oligopeptide transport
DKK89_RS07480	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKK89_RS07485	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKK89_RS07495	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKK89_RS07500	COG4605	iron ion homeostasis
DKK89_RS07505	COG4604	ABC transporter, ATP-binding protein
DKK89_RS07510	COG4607	ABC-type enterochelin transport system periplasmic component
DKK89_RS07565	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DKK89_RS07570	COG1739	Uncharacterized protein family UPF0029
DKK89_RS07580	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
DKK89_RS07585	COG1040	competence protein
DKK89_RS07615	COG1388	LysM domain
DKK89_RS07615	COG3942	CHAP domain
DKK89_RS07670	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DKK89_RS07745	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DKK89_RS07750	COG1647	Serine aminopeptidase, S33
DKK89_RS07755	COG0557	exoribonuclease II activity
DKK89_RS07830	COG1278	Cold shock
DKK89_RS07870	COG0406	alpha-ribazole phosphatase activity
DKK89_RS07875	COG1279	arginine transmembrane transporter activity
DKK89_RS07905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DKK89_RS07910	COG1393	Belongs to the ArsC family
DKK89_RS07925	COG3878	Protein conserved in bacteria
DKK89_RS07935	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DKK89_RS07950	COG2011	ABC-type metal ion transport system permease component
DKK89_RS07955	COG1464	Belongs to the NlpA lipoprotein family
DKK89_RS07960	COG0582	viral genome integration into host DNA
DKK89_RS08050	COG3728	DNA packaging
DKK89_RS08050	COG5484	DNA packaging
DKK89_RS08095	COG0396	ATPase activity
DKK89_RS08100	COG0719	Fe-S assembly protein
DKK89_RS08110	COG0822	iron-sulfur transferase activity
DKK89_RS08135	COG1253	flavin adenine dinucleotide binding
DKK89_RS08150	COG1801	Protein of unknown function DUF72
DKK89_RS08155	COG0730	response to heat
DKK89_RS08170	COG4470	Protein conserved in bacteria
DKK89_RS08190	COG2445	Protein of unknown function DUF86
DKK89_RS08220	COG1696	Membrane protein involved in D-alanine export
DKK89_RS08230	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
DKK89_RS08235	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DKK89_RS08240	COG4837	Protein of unknown function (DUF1462)
DKK89_RS08245	COG1252	NADH dehydrogenase
DKK89_RS08255	COG0316	Belongs to the HesB IscA family
DKK89_RS08265	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DKK89_RS08270	COG2056	Na+-H+ antiporter family
DKK89_RS08275	COG2050	protein possibly involved in aromatic compounds catabolism
DKK89_RS08330	COG1098	S1 RNA binding domain
DKK89_RS08335	COG1902	pentaerythritol trinitrate reductase activity
DKK89_RS08350	COG0584	glycerophosphoryl diester phosphodiesterase
DKK89_RS08370	COG0398	Pfam SNARE associated Golgi protein
DKK89_RS08410	COG0561	phosphatase activity
DKK89_RS08450	COG1881	PFAM PEBP family protein
DKK89_RS08480	COG0601	transmembrane transport
DKK89_RS08485	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKK89_RS08490	COG0444	Belongs to the ABC transporter superfamily
DKK89_RS08495	COG4608	Belongs to the ABC transporter superfamily
DKK89_RS08500	COG4166	transmembrane transport
DKK89_RS08505	COG0747	negative chemotaxis
DKK89_RS08510	COG0444	Belongs to the ABC transporter superfamily
DKK89_RS08515	COG4608	Belongs to the ABC transporter superfamily
DKK89_RS08520	COG0601	transmembrane transport
DKK89_RS08525	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKK89_RS08550	COG1164	Oligoendopeptidase f
DKK89_RS08560	COG2346	COG2346, Truncated hemoglobins
DKK89_RS08575	COG2357	RelA SpoT domain protein
DKK89_RS08585	COG0564	pseudouridine synthase activity
DKK89_RS08590	COG2239	Acts as a magnesium transporter
DKK89_RS08595	COG0569	domain protein
DKK89_RS08595	COG0475	glutathione-regulated potassium exporter activity
DKK89_RS08605	COG0628	permease
DKK89_RS08610	COG1115	amino acid carrier protein
DKK89_RS08650	COG0861	Integral membrane protein TerC family
DKK89_RS08660	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DKK89_RS08665	COG0737	Belongs to the 5'-nucleotidase family
DKK89_RS08680	COG4903	ComK protein
DKK89_RS08695	COG4873	Protein conserved in bacteria
DKK89_RS08750	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DKK89_RS08760	COG2314	TM2 domain
DKK89_RS08765	COG0456	acetyltransferase
DKK89_RS08770	COG1575	Belongs to the MenA family. Type 1 subfamily
DKK89_RS08780	COG1169	isochorismate synthase
DKK89_RS08790	COG2267	carboxylic ester hydrolase activity
DKK89_RS08815	COG0436	Aminotransferase
DKK89_RS08820	COG3594	Acyltransferase
DKK89_RS08850	COG1316	TRANSCRIPTIONal
DKK89_RS08895	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DKK89_RS08910	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DKK89_RS08950	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DKK89_RS08955	COG4172	Belongs to the ABC transporter superfamily
DKK89_RS08960	COG4721	ABC-type cobalt transport system, permease component
DKK89_RS08985	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DKK89_RS09005	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKK89_RS09010	COG1271	oxidase subunit
DKK89_RS09015	COG1294	oxidase, subunit
DKK89_RS09020	COG0569	domain protein
DKK89_RS09085	COG1176	ABC-type spermidine putrescine transport system, permease component I
DKK89_RS09090	COG1177	transmembrane transport
DKK89_RS09095	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DKK89_RS09120	COG0483	inositol monophosphate 1-phosphatase activity
DKK89_RS09130	COG1217	gtp-binding protein TYPA
DKK89_RS09140	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DKK89_RS09150	COG0772	Belongs to the SEDS family
DKK89_RS09185	COG3679	Belongs to the UPF0342 family
DKK89_RS09205	COG0742	ribosomal rna small subunit methyltransferase
DKK89_RS09265	COG4509	Sortase family
DKK89_RS09280	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKK89_RS09325	COG1796	DNA polymerase
DKK89_RS09325	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DKK89_RS09350	COG2009	succinate dehydrogenase
DKK89_RS09355	COG1053	succinate dehydrogenase
DKK89_RS09360	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DKK89_RS09490	COG1288	antiporter activity
DKK89_RS09525	COG1011	Hydrolase
DKK89_RS09550	COG4839	cell division protein FtsL
DKK89_RS09555	COG0768	penicillin binding
DKK89_RS09570	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DKK89_RS09575	COG0849	cell division
DKK89_RS09590	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DKK89_RS09600	COG0762	integral membrane protein
DKK89_RS09605	COG2302	S4 RNA-binding domain
DKK89_RS09610	COG3599	regulation of cell shape
DKK89_RS09640	COG0564	pseudouridine synthase activity
DKK89_RS09650	COG2233	PERMEase
DKK89_RS09695	COG1293	RNA-binding protein homologous to eukaryotic snRNP
DKK89_RS09710	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DKK89_RS09715	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DKK89_RS09725	COG2314	TM2 domain
DKK89_RS09740	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DKK89_RS09740	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DKK89_RS09750	COG0631	protein serine/threonine phosphatase activity
DKK89_RS09775	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DKK89_RS09790	COG1302	Protein conserved in bacteria
DKK89_RS09840	COG1196	nuclear chromosome segregation
DKK89_RS09845	COG0552	protein localization to endoplasmic reticulum
DKK89_RS09855	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DKK89_RS09910	COG2348	transferase activity, transferring amino-acyl groups
DKK89_RS09915	COG0758	DNA mediated transformation
DKK89_RS09920	COG0758	DNA mediated transformation
DKK89_RS10020	COG0195	Participates in both transcription termination and antitermination
DKK89_RS10025	COG2740	Nucleic-acid-binding protein implicated in transcription termination
DKK89_RS10050	COG0196	riboflavin kinase activity
DKK89_RS10080	COG2188	Transcriptional regulator
DKK89_RS10085	COG0612	Peptidase, M16
DKK89_RS10090	COG0612	Peptidase, M16
DKK89_RS10095	COG0300	oxidoreductase activity
DKK89_RS10115	COG1058	Belongs to the CinA family
DKK89_RS10115	COG1546	Belongs to the CinA family
DKK89_RS10135	COG1692	metallophosphoesterase
DKK89_RS10140	COG0674	pyruvate-flavodoxin oxidoreductase activity
DKK89_RS10140	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DKK89_RS10145	COG1013	pyruvate-flavodoxin oxidoreductase activity
DKK89_RS10180	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
DKK89_RS10185	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DKK89_RS10210	COG1923	regulation of RNA biosynthetic process
DKK89_RS10220	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DKK89_RS10225	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
DKK89_RS10230	COG0789	Transcriptional regulator
DKK89_RS10315	COG1131	(ABC) transporter
DKK89_RS10330	COG2197	response regulator
DKK89_RS10340	COG1525	nuclease
DKK89_RS10355	COG0527	aspartate kinase activity
DKK89_RS10360	COG0460	homoserine dehydrogenase
DKK89_RS10365	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DKK89_RS10390	COG0833	amino acid
DKK89_RS10420	COG2340	Cysteine-rich secretory protein family
DKK89_RS10455	COG4846	Membrane protein involved in cytochrome C biogenesis
DKK89_RS10475	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKK89_RS10490	COG0824	Thioesterase
DKK89_RS10530	COG1115	amino acid carrier protein
DKK89_RS10545	COG0628	permease
DKK89_RS10570	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DKK89_RS10580	COG1363	Peptidase, m42
DKK89_RS10585	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DKK89_RS10590	COG0512	Glutamine amidotransferase of anthranilate synthase
DKK89_RS10635	COG0561	phosphatase activity
DKK89_RS10680	COG0704	Plays a role in the regulation of phosphate uptake
DKK89_RS10690	COG0581	inorganic phosphate transmembrane transporter activity
DKK89_RS10695	COG0573	inorganic phosphate transmembrane transporter activity
DKK89_RS10715	COG0488	(ABC) transporter
DKK89_RS10725	COG0527	aspartate kinase activity
DKK89_RS10730	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DKK89_RS10805	COG4548	von Willebrand factor, type A
DKK89_RS10810	COG0714	Associated with various cellular activities
DKK89_RS10855	COG0671	phosphoesterase, PA-phosphatase related
DKK89_RS10930	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DKK89_RS10955	COG0531	amino acid
DKK89_RS10970	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DKK89_RS10975	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
DKK89_RS10990	COG0116	Belongs to the methyltransferase superfamily
DKK89_RS11030	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DKK89_RS11030	COG4499	WXG100 protein secretion system (Wss), protein YukC
DKK89_RS11040	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DKK89_RS11045	COG3935	DnaD domain protein
DKK89_RS11070	COG0438	transferase activity, transferring glycosyl groups
DKK89_RS11075	COG1694	Mazg nucleotide pyrophosphohydrolase
DKK89_RS11080	COG2738	Putative neutral zinc metallopeptidase
DKK89_RS11085	COG4347	Protein of unknown function (DUF1405)
DKK89_RS11125	COG0142	geranyltranstransferase activity
DKK89_RS11190	COG0492	ferredoxin-NADP+ reductase activity
DKK89_RS11205	COG0514	ATP-dependent DNA helicase (RecQ)
DKK89_RS11215	COG1141	Ferredoxin
DKK89_RS11260	COG0745	RESPONSE REGULATOR receiver
DKK89_RS11265	COG1187	pseudouridine synthase activity
DKK89_RS11290	COG0735	belongs to the Fur family
DKK89_RS11295	COG0494	nUDIX hydrolase
DKK89_RS11300	COG0667	Aldo Keto reductase
DKK89_RS11310	COG4221	oxidoreductase activity
DKK89_RS11325	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DKK89_RS11335	COG0366	Alpha amylase catalytic
DKK89_RS11340	COG1609	Transcriptional regulator
DKK89_RS11365	COG2195	Cleaves the N-terminal amino acid of tripeptides
DKK89_RS11375	COG4129	membrane
DKK89_RS11385	COG0508	dehydrogenase complex catalyzes the overall conversion of
DKK89_RS11390	COG0022	dehydrogenase e1 component
DKK89_RS11395	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DKK89_RS11400	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKK89_RS11405	COG0497	DNA recombination
DKK89_RS11435	COG1302	Protein conserved in bacteria
DKK89_RS11440	COG0439	Biotin carboxylase
DKK89_RS11445	COG0511	ligase activity, forming carbon-carbon bonds
DKK89_RS11455	COG0006	proline dipeptidase activity
DKK89_RS11470	COG0095	Lipoate-protein ligase
DKK89_RS11475	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DKK89_RS11520	COG4537	Required for transformation and DNA binding
DKK89_RS11525	COG1459	type II secretion system
DKK89_RS11530	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DKK89_RS11535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKK89_RS11540	COG0011	TIGRFAM Protein of
DKK89_RS11545	COG1940	carbohydrate kinase activity
DKK89_RS11550	COG4483	Protein conserved in bacteria
DKK89_RS11560	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DKK89_RS11570	COG0768	penicillin binding
DKK89_RS11585	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DKK89_RS11590	COG1121	(ABC) transporter
DKK89_RS11600	COG0513	Belongs to the DEAD box helicase family
DKK89_RS11610	COG2384	SAM-dependent methyltransferase
DKK89_RS11630	COG0517	IMP dehydrogenase activity
DKK89_RS11650	COG0295	cytidine deaminase activity
DKK89_RS11665	COG1702	phosphate starvation-inducible protein PhoH
DKK89_RS11680	COG1030	water channel activity
DKK89_RS11690	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DKK89_RS11695	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DKK89_RS11725	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DKK89_RS11740	COG1466	dna polymerase III delta subunit
DKK89_RS11745	COG2333	competence protein COMEC
DKK89_RS11745	COG0658	competence protein
DKK89_RS11750	COG2131	deaminase
DKK89_RS11755	COG2183	response to ionizing radiation
DKK89_RS11760	COG2226	methyltransferase
DKK89_RS11765	COG0799	negative regulation of ribosome biogenesis
DKK89_RS11770	COG1713	HD superfamily hydrolase involved in NAD metabolism
DKK89_RS11780	COG1534	Rna-binding protein
DKK89_RS11790	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
DKK89_RS11795	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
DKK89_RS11825	COG3177	Filamentation induced by cAMP protein fic
DKK89_RS11835	COG1914	H( )-stimulated, divalent metal cation uptake system
DKK89_RS11845	COG0439	Biotin carboxylase
DKK89_RS11850	COG0511	ligase activity, forming carbon-carbon bonds
DKK89_RS11855	COG1984	allophanate hydrolase subunit 2
DKK89_RS11860	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DKK89_RS11875	COG0826	peptidase U32
DKK89_RS11880	COG0826	peptidase U32
DKK89_RS11910	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DKK89_RS11935	COG1104	cysteine desulfurase activity
DKK89_RS11940	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKK89_RS11950	COG3237	CsbD-like
DKK89_RS11955	COG1959	2 iron, 2 sulfur cluster binding
DKK89_RS11960	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DKK89_RS11965	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DKK89_RS12010	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DKK89_RS12010	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
DKK89_RS12015	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DKK89_RS12015	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DKK89_RS12020	COG1862	Preprotein translocase
DKK89_RS12060	COG2868	ribosomal protein
DKK89_RS12105	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DKK89_RS12155	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DKK89_RS12165	COG0285	dihydrofolate synthase activity
DKK89_RS12175	COG2818	Glycosylase
DKK89_RS12210	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DKK89_RS12245	COG4112	unkown
DKK89_RS12270	COG0833	amino acid
DKK89_RS12285	COG1484	DNA-dependent DNA replication
DKK89_RS12315	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DKK89_RS12315	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DKK89_RS12325	COG5002	protein histidine kinase activity
DKK89_RS12330	COG0745	RESPONSE REGULATOR receiver
DKK89_RS12345	COG0372	Belongs to the citrate synthase family
DKK89_RS12350	COG1113	amino acid transport
DKK89_RS12375	COG0281	malic enzyme
DKK89_RS12385	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DKK89_RS12390	COG4109	DRTGG domain
DKK89_RS12430	COG0827	DNA restriction-modification system
DKK89_RS12440	COG0730	response to heat
DKK89_RS12450	COG1104	cysteine desulfurase activity
DKK89_RS12465	COG1956	GAF domain-containing protein
DKK89_RS12485	COG0584	glycerophosphoryl diester phosphodiesterase
DKK89_RS12490	COG1764	response to oxidative stress
DKK89_RS12495	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DKK89_RS12500	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKK89_RS12515	COG1263	PTS System
DKK89_RS12515	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKK89_RS12520	COG0204	Acyl-transferase
DKK89_RS12525	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKK89_RS12560	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKK89_RS12565	COG0454	-acetyltransferase
DKK89_RS12585	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DKK89_RS12585	COG1605	Chorismate mutase
DKK89_RS12610	COG1674	ftsk spoiiie
DKK89_RS12615	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DKK89_RS12625	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DKK89_RS12630	COG1363	Peptidase, m42
DKK89_RS12640	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKK89_RS12650	COG0510	thiamine kinase activity
DKK89_RS12670	COG1187	pseudouridine synthase activity
DKK89_RS12675	COG2244	polysaccharide biosynthetic process
DKK89_RS12680	COG2081	HI0933 family
DKK89_RS12700	COG2814	Major facilitator Superfamily
DKK89_RS12705	COG1242	4 iron, 4 sulfur cluster binding
DKK89_RS12710	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
DKK89_RS12720	COG2267	carboxylic ester hydrolase activity
DKK89_RS12755	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DKK89_RS12755	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DKK89_RS12775	COG4193	domain, Protein
DKK89_RS12775	COG5632	N-Acetylmuramoyl-L-alanine amidase
DKK89_RS12775	COG3266	domain, Protein
DKK89_RS12805	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DKK89_RS12830	COG0656	L-ascorbic acid biosynthetic process
DKK89_RS12850	COG1506	peptidase
DKK89_RS12855	COG2816	NAD+ diphosphatase activity
DKK89_RS13120	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
DKK89_RS13150	COG1131	(ABC) transporter
DKK89_RS13155	COG0537	adenosine 5'-monophosphoramidase activity
DKK89_RS13185	COG0420	3'-5' exonuclease activity
DKK89_RS13215	COG2197	response regulator
DKK89_RS13220	COG2203	Gaf domain
DKK89_RS13220	COG4585	Histidine kinase
DKK89_RS13225	COG0564	pseudouridine synthase activity
DKK89_RS13255	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DKK89_RS13260	COG1126	abc transporter atp-binding protein
DKK89_RS13265	COG0765	amino acid transport
DKK89_RS13435	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKK89_RS13440	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DKK89_RS13450	COG4129	membrane
DKK89_RS13475	COG1988	membrane-bound metal-dependent
DKK89_RS13490	COG1388	LysM domain
DKK89_RS13490	COG1134	teichoic acid transport
DKK89_RS13520	COG0535	radical SAM domain protein
DKK89_RS13525	COG1607	acyl-coa hydrolase
DKK89_RS13530	COG2309	aminopeptidase activity
DKK89_RS13550	COG1295	ribonuclease BN
DKK89_RS13690	COG4851	CamS sex pheromone cAM373 precursor
DKK89_RS13710	COG4496	protein, YerC YecD
DKK89_RS13750	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DKK89_RS13760	COG0077	Prephenate dehydratase
DKK89_RS13770	COG0471	metal ion transport
DKK89_RS13780	COG1335	isochorismatase
DKK89_RS13795	COG1012	belongs to the aldehyde dehydrogenase family
DKK89_RS13850	COG1131	(ABC) transporter
DKK89_RS13865	COG1725	Transcriptional regulator
DKK89_RS13920	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DKK89_RS13990	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKK89_RS13995	COG1621	beta-fructofuranosidase activity
DKK89_RS14000	COG1609	Transcriptional regulator
DKK89_RS14005	COG0004	ammonium transporteR
DKK89_RS14010	COG0425	Belongs to the sulfur carrier protein TusA family
DKK89_RS14015	COG2391	methyltransferase activity
DKK89_RS14025	COG0488	(ABC) transporter
DKK89_RS14035	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DKK89_RS14045	COG0456	acetyltransferase
DKK89_RS14050	COG1214	PFAM Peptidase M22, glycoprotease
DKK89_RS14055	COG0802	atpase or kinase
DKK89_RS14070	COG0028	Belongs to the TPP enzyme family
DKK89_RS14145	COG2183	response to ionizing radiation
DKK89_RS14150	COG1191	sigma factor activity
DKK89_RS14160	COG1366	Belongs to the anti-sigma-factor antagonist family
DKK89_RS14165	COG2208	phosphoserine phosphatase activity
DKK89_RS14255	COG0604	alcohol dehydrogenase
DKK89_RS14275	COG3682	Transcriptional regulator