CFN12_RS00005 SM00382 ATPases associated with a variety of cellular activities CFN12_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CFN12_RS00010 SM00480 DNA polymerase III beta subunit CFN12_RS00025 SM00387 Histidine kinase-like ATPases CFN12_RS00025 SM00433 TopoisomeraseII CFN12_RS00030 SM00434 DNA Topoisomerase IV CFN12_RS00075 SM00267 diguanylate cyclase CFN12_RS00095 SM00788 Adenylosuccinate synthetase CFN12_RS00110 SM00448 cheY-homologous receiver domain CFN12_RS00110 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS00115 SM00091 PAS domain CFN12_RS00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFN12_RS00115 SM00387 Histidine kinase-like ATPases CFN12_RS00115 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS00130 SM00849 Metallo-beta-lactamase superfamily CFN12_RS00180 SM00450 Rhodanese Homology Domain CFN12_RS00185 SM00450 Rhodanese Homology Domain CFN12_RS00185 SM00849 Metallo-beta-lactamase superfamily CFN12_RS00260 SM00148 Phospholipase C, catalytic domain (part); domain X CFN12_RS00275 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS00305 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS00320 SM00257 Lysin motif CFN12_RS00330 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS00390 SM00470 ParB-like nuclease domain CFN12_RS00410 SM00822 CFN12_RS00410 CFN12_RS00455 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS00475 SM01133 CFN12_RS00475 CFN12_RS00495 SM00382 ATPases associated with a variety of cellular activities CFN12_RS00500 SM00062 Bacterial periplasmic substrate-binding proteins CFN12_RS00615 SM00984 UDP binding domain CFN12_RS00655 SM00382 ATPases associated with a variety of cellular activities CFN12_RS00715 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFN12_RS00775 SM00487 DEAD-like helicases superfamily CFN12_RS00795 SM00382 ATPases associated with a variety of cellular activities CFN12_RS00835 SM00382 ATPases associated with a variety of cellular activities CFN12_RS00880 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS00880 SM00448 cheY-homologous receiver domain CFN12_RS00950 SM00882 Coenzyme A transferase CFN12_RS01035 SM00829 Enoylreductase CFN12_RS01095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFN12_RS01095 SM00387 Histidine kinase-like ATPases CFN12_RS01100 SM00448 cheY-homologous receiver domain CFN12_RS01100 SM00850 LytTr DNA-binding domain CFN12_RS01115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS01115 SM00866 CFN12_RS01115 CFN12_RS01165 SM00354 helix_turn _helix lactose operon repressor CFN12_RS01200 SM00382 ATPases associated with a variety of cellular activities CFN12_RS01405 SM00382 ATPases associated with a variety of cellular activities CFN12_RS01440 SM01130 CFN12_RS01440 CFN12_RS01495 SM00506 Appr-1"-p processing enzyme CFN12_RS01540 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS01620 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS01630 SM00382 ATPases associated with a variety of cellular activities CFN12_RS01680 SM00470 ParB-like nuclease domain CFN12_RS01770 SM00855 Phosphoglycerate mutase family CFN12_RS01845 SM00116 Domain in cystathionine beta-synthase and other proteins. CFN12_RS01845 SM01240 CFN12_RS01845 CFN12_RS02045 SM00833 Cobalamin synthesis protein cobW C-terminal domain CFN12_RS02095 SM00014 Acid phosphatase homologues CFN12_RS02125 SM00382 ATPases associated with a variety of cellular activities CFN12_RS02125 SM00930 CFN12_RS02125 CFN12_RS02140 SM00257 Lysin motif CFN12_RS02195 SM00642 Alpha-amylase domain CFN12_RS02200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS02200 SM00866 CFN12_RS02200 CFN12_RS02220 SM00382 ATPases associated with a variety of cellular activities CFN12_RS02230 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFN12_RS02230 SM00493 CFN12_RS02230 CFN12_RS02295 SM00465 GIY-YIG type nucleases (URI domain) CFN12_RS02315 SM00493 CFN12_RS02315 CFN12_RS02320 SM00650 Ribosomal RNA adenine dimethylases CFN12_RS02360 SM01400 CFN12_RS02360 CFN12_RS02380 SM00487 DEAD-like helicases superfamily CFN12_RS02380 SM00490 helicase superfamily c-terminal domain CFN12_RS02380 SM00982 CFN12_RS02380 CFN12_RS02380 SM01058 CarD-like/TRCF domain CFN12_RS02395 SM00363 S4 RNA-binding domain CFN12_RS02405 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS02410 SM00977 TilS substrate C-terminal domain CFN12_RS02420 SM00382 ATPases associated with a variety of cellular activities CFN12_RS02440 SM00905 Dihydroneopterin aldolase CFN12_RS02540 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS02575 SM00382 ATPases associated with a variety of cellular activities CFN12_RS02575 SM01086 C-terminal, D2-small domain, of ClpB protein CFN12_RS02580 SM00382 ATPases associated with a variety of cellular activities CFN12_RS02585 SM00670 Large family of predicted nucleotide-binding domains CFN12_RS02605 SM00840 CFN12_RS02605 CFN12_RS02610 SM00535 Ribonuclease III family CFN12_RS02615 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFN12_RS02640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CFN12_RS02640 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CFN12_RS02645 SM00649 Ribosomal protein L11/L12 CFN12_RS02680 SM00663 RNA polymerase I subunit A N-terminus CFN12_RS02700 SM00838 Elongation factor G C-terminus CFN12_RS02700 SM00889 Elongation factor G, domain IV CFN12_RS02825 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CFN12_RS02880 SM00986 Uracil DNA glycosylase superfamily CFN12_RS02880 SM00987 UreE urease accessory protein, C-terminal domain CFN12_RS03060 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS03070 SM00829 Enoylreductase CFN12_RS03085 SM00836 DALR anticodon binding domain CFN12_RS03085 SM01016 Arginyl tRNA synthetase N terminal dom CFN12_RS03095 SM00478 endonuclease III CFN12_RS03210 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03215 SM00529 Helix-turn-helix diphteria tox regulatory element CFN12_RS03215 SM00899 CFN12_RS03215 CFN12_RS03230 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03260 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03280 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03300 SM01120 CFN12_RS03300 CFN12_RS03345 SM00448 cheY-homologous receiver domain CFN12_RS03345 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS03350 SM00387 Histidine kinase-like ATPases CFN12_RS03355 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03375 SM00257 Lysin motif CFN12_RS03385 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS03475 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03480 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03485 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS03490 SM00833 Cobalamin synthesis protein cobW C-terminal domain CFN12_RS03545 SM00420 helix_turn_helix, Deoxyribose operon repressor CFN12_RS03545 SM01134 CFN12_RS03545 CFN12_RS03565 SM01091 Transporter associated domain CFN12_RS03580 SM00387 Histidine kinase-like ATPases CFN12_RS03580 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS03585 SM00448 cheY-homologous receiver domain CFN12_RS03585 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS03640 SM00796 Allophanate hydrolase subunit 1 CFN12_RS03645 SM00797 Allophanate hydrolase subunit 2 CFN12_RS03655 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03660 SM00341 Helicase and RNase D C-terminal CFN12_RS03660 SM00487 DEAD-like helicases superfamily CFN12_RS03660 SM00490 helicase superfamily c-terminal domain CFN12_RS03660 SM00956 CFN12_RS03660 CFN12_RS03665 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03690 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFN12_RS03760 SM00382 ATPases associated with a variety of cellular activities CFN12_RS03815 SM00267 diguanylate cyclase CFN12_RS03835 SM00487 DEAD-like helicases superfamily CFN12_RS03835 SM00490 helicase superfamily c-terminal domain CFN12_RS03850 SM00957 SecA DEAD-like domain CFN12_RS03850 SM00958 SecA preprotein cross-linking domain CFN12_RS03870 SM00257 Lysin motif CFN12_RS03885 SM00487 DEAD-like helicases superfamily CFN12_RS03885 SM00490 helicase superfamily c-terminal domain CFN12_RS03910 SM00028 Tetratricopeptide repeats CFN12_RS03965 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFN12_RS03985 SM01192 CFN12_RS03985 CFN12_RS03985 SM01193 CFN12_RS03985 CFN12_RS04005 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS04005 SM00357 Cold shock protein domain CFN12_RS04005 SM00955 CFN12_RS04005 CFN12_RS04075 SM00318 Staphylococcal nuclease homologues CFN12_RS04080 SM00357 Cold shock protein domain CFN12_RS04120 SM00855 Phosphoglycerate mutase family CFN12_RS04180 SM00493 CFN12_RS04180 CFN12_RS04190 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04190 SM00930 CFN12_RS04190 CFN12_RS04215 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04285 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS04430 SM01298 CFN12_RS04430 CFN12_RS04440 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS04455 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFN12_RS04540 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04540 SM01086 C-terminal, D2-small domain, of ClpB protein CFN12_RS04585 SM00825 Beta-ketoacyl synthase CFN12_RS04605 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04610 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04625 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04630 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04685 SM01118 CFN12_RS04685 CFN12_RS04695 SM00954 Region found in RelA / SpoT proteins CFN12_RS04710 SM00116 Domain in cystathionine beta-synthase and other proteins. CFN12_RS04710 SM00924 MgtE intracellular N domain CFN12_RS04775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFN12_RS04805 SM00914 CFN12_RS04805 CFN12_RS04850 SM00382 ATPases associated with a variety of cellular activities CFN12_RS04950 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS04960 SM00047 Lysozyme subfamily 2 CFN12_RS04960 SM00644 CFN12_RS04960 CFN12_RS05025 SM01001 AIR carboxylase CFN12_RS05045 SM01211 CFN12_RS05045 CFN12_RS05070 SM00798 AICARFT/IMPCHase bienzyme CFN12_RS05070 SM00851 MGS-like domain CFN12_RS05075 SM01209 CFN12_RS05075 CFN12_RS05075 SM01210 CFN12_RS05075 CFN12_RS05085 SM00382 ATPases associated with a variety of cellular activities CFN12_RS05155 SM00849 Metallo-beta-lactamase superfamily CFN12_RS05185 SM00861 Transketolase, pyrimidine binding domain CFN12_RS05205 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS05210 SM00382 ATPases associated with a variety of cellular activities CFN12_RS05260 SM00838 Elongation factor G C-terminus CFN12_RS05285 SM00878 Biotin carboxylase C-terminal domain CFN12_RS05365 SM00857 Resolvase, N terminal domain CFN12_RS05375 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS05380 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS05385 SM01040 BRO family, N-terminal domain CFN12_RS05660 SM00047 Lysozyme subfamily 2 CFN12_RS05680 SM00287 Bacterial SH3 domain homologues CFN12_RS05680 SM00644 CFN12_RS05680 CFN12_RS05695 SM00725 NEAr Transporter domain CFN12_RS05700 SM00725 NEAr Transporter domain CFN12_RS05705 SM00725 NEAr Transporter domain CFN12_RS05740 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFN12_RS05750 SM00873 B3/4 domain CFN12_RS05750 SM00874 tRNA synthetase B5 domain CFN12_RS05750 SM00896 Ferredoxin-fold anticodon binding domain CFN12_RS05775 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFN12_RS05775 SM00481 DNA polymerase alpha chain like domain CFN12_RS05775 SM00483 DNA polymerase X family CFN12_RS05780 SM00463 Small MutS-related domain CFN12_RS05780 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CFN12_RS05780 SM00534 ATPase domain of DNA mismatch repair MUTS family CFN12_RS05795 SM00465 GIY-YIG type nucleases (URI domain) CFN12_RS05990 SM00740 CFN12_RS05990 CFN12_RS06010 SM00842 Cell division protein FtsA CFN12_RS06015 SM00864 Tubulin/FtsZ family, GTPase domain CFN12_RS06015 SM00865 Tubulin/FtsZ family, C-terminal domain CFN12_RS06040 SM00363 S4 RNA-binding domain CFN12_RS06075 SM00363 S4 RNA-binding domain CFN12_RS06100 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CFN12_RS06105 SM00851 MGS-like domain CFN12_RS06105 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFN12_RS06105 SM01209 CFN12_RS06105 CFN12_RS06110 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CFN12_RS06135 SM00072 Guanylate kinase homologues. CFN12_RS06140 SM01409 CFN12_RS06140 CFN12_RS06150 SM00487 DEAD-like helicases superfamily CFN12_RS06150 SM00490 helicase superfamily c-terminal domain CFN12_RS06185 SM00331 Sigma factor PP2C-like phosphatases CFN12_RS06185 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFN12_RS06190 SM00220 Serine/Threonine protein kinases, catalytic domain CFN12_RS06190 SM00740 CFN12_RS06190 CFN12_RS06205 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CFN12_RS06220 SM01120 CFN12_RS06220 CFN12_RS06220 SM01121 CFN12_RS06220 CFN12_RS06225 SM00487 DEAD-like helicases superfamily CFN12_RS06225 SM00490 helicase superfamily c-terminal domain CFN12_RS06240 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CFN12_RS06245 SM00822 CFN12_RS06245 CFN12_RS06260 SM00358 Double-stranded RNA binding motif CFN12_RS06260 SM00535 Ribonuclease III family CFN12_RS06265 SM00968 SMC proteins Flexible Hinge Domain CFN12_RS06270 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06270 SM00962 SRP54-type protein, GTPase domain CFN12_RS06270 SM00963 SRP54-type protein, helical bundle domain CFN12_RS06280 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06280 SM00962 SRP54-type protein, GTPase domain CFN12_RS06280 SM00963 SRP54-type protein, helical bundle domain CFN12_RS06325 SM00881 CoA binding domain CFN12_RS06330 SM00257 Lysin motif CFN12_RS06345 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CFN12_RS06345 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CFN12_RS06345 SM00493 CFN12_RS06345 CFN12_RS06365 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06365 SM01086 C-terminal, D2-small domain, of ClpB protein CFN12_RS06425 SM00479 CFN12_RS06425 CFN12_RS06425 SM00481 DNA polymerase alpha chain like domain CFN12_RS06440 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS06440 SM00322 K homology RNA-binding domain CFN12_RS06470 SM00904 Riboflavin kinase CFN12_RS06475 SM01387 CFN12_RS06475 CFN12_RS06480 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS06480 SM00322 K homology RNA-binding domain CFN12_RS06490 SM00849 Metallo-beta-lactamase superfamily CFN12_RS06495 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06495 SM00843 CFN12_RS06495 CFN12_RS06500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS06500 SM00866 CFN12_RS06500 CFN12_RS06525 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS06535 SM00852 Probable molybdopterin binding domain CFN12_RS06540 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06545 SM00322 K homology RNA-binding domain CFN12_RS06545 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS06575 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS06590 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CFN12_RS06590 SM00534 ATPase domain of DNA mismatch repair MUTS family CFN12_RS06595 SM00853 MutL C terminal dimerisation domain CFN12_RS06595 SM01340 CFN12_RS06595 CFN12_RS06650 SM00422 helix_turn_helix, mercury resistance CFN12_RS06655 SM01230 CFN12_RS06655 CFN12_RS06740 SM00155 Phospholipase D. Active site motifs. CFN12_RS06745 SM00382 ATPases associated with a variety of cellular activities CFN12_RS06760 SM00421 helix_turn_helix, Lux Regulon CFN12_RS06760 SM00448 cheY-homologous receiver domain CFN12_RS06770 SM00318 Staphylococcal nuclease homologues CFN12_RS06825 SM01060 CFN12_RS06825 CFN12_RS06840 SM01240 CFN12_RS06840 CFN12_RS06870 SM00861 Transketolase, pyrimidine binding domain CFN12_RS06940 SM01207 CFN12_RS06940 CFN12_RS06945 SM00387 Histidine kinase-like ATPases CFN12_RS06945 SM00433 TopoisomeraseII CFN12_RS06950 SM00434 DNA Topoisomerase IV CFN12_RS06965 SM01061 CAT RNA binding domain CFN12_RS07070 SM00382 ATPases associated with a variety of cellular activities CFN12_RS07075 SM00382 ATPases associated with a variety of cellular activities CFN12_RS07110 SM00382 ATPases associated with a variety of cellular activities CFN12_RS07140 SM00382 ATPases associated with a variety of cellular activities CFN12_RS07150 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFN12_RS07155 SM01130 CFN12_RS07155 CFN12_RS07175 SM01005 Alanine racemase, C-terminal domain CFN12_RS07190 SM00357 Cold shock protein domain CFN12_RS07230 SM00327 von Willebrand factor (vWF) type A domain CFN12_RS07255 SM00861 Transketolase, pyrimidine binding domain CFN12_RS07260 SM00387 Histidine kinase-like ATPases CFN12_RS07260 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS07265 SM00448 cheY-homologous receiver domain CFN12_RS07265 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS07280 SM01321 CFN12_RS07280 CFN12_RS07285 SM00014 Acid phosphatase homologues CFN12_RS07300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFN12_RS07300 SM00245 tail specific protease CFN12_RS07350 SM00932 Scaffold protein Nfu/NifU N terminal CFN12_RS07395 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CFN12_RS07395 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CFN12_RS07400 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFN12_RS07400 SM00475 5'-3' exonuclease CFN12_RS07420 SM00981 CFN12_RS07420 CFN12_RS07470 SM00478 endonuclease III CFN12_RS07470 SM00525 CFN12_RS07470 CFN12_RS07485 SM00479 CFN12_RS07485 CFN12_RS07485 SM00491 CFN12_RS07485 CFN12_RS07520 SM00914 CFN12_RS07520 CFN12_RS07525 SM00028 Tetratricopeptide repeats CFN12_RS07550 SM00562 CFN12_RS07550 CFN12_RS07575 SM00411 bacterial (prokaryotic) histone like domain CFN12_RS07590 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS07615 SM00870 CFN12_RS07615 CFN12_RS07630 SM00257 Lysin motif CFN12_RS07635 SM00487 DEAD-like helicases superfamily CFN12_RS07635 SM00490 helicase superfamily c-terminal domain CFN12_RS07695 SM00287 Bacterial SH3 domain homologues CFN12_RS07695 SM00646 CFN12_RS07695 CFN12_RS07760 SM00635 Bacterial Ig-like domain 2 CFN12_RS07815 SM00507 HNH nucleases CFN12_RS07920 SM00990 CFN12_RS07920 CFN12_RS08010 SM00482 DNA polymerase A domain CFN12_RS08055 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS08060 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS08105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFN12_RS08105 SM00387 Histidine kinase-like ATPases CFN12_RS08105 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS08110 SM00448 cheY-homologous receiver domain CFN12_RS08110 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS08115 SM00363 S4 RNA-binding domain CFN12_RS08180 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS08180 SM00871 Bacterial transcription activator, effector binding domain CFN12_RS08185 SM00642 Alpha-amylase domain CFN12_RS08190 SM00354 helix_turn _helix lactose operon repressor CFN12_RS08205 SM01350 CFN12_RS08205 CFN12_RS08235 SM00861 Transketolase, pyrimidine binding domain CFN12_RS08285 SM00878 Biotin carboxylase C-terminal domain CFN12_RS08295 SM00841 Elongation factor P, C-terminal CFN12_RS08295 SM01185 CFN12_RS08295 CFN12_RS08320 SM00450 Rhodanese Homology Domain CFN12_RS08380 SM00849 Metallo-beta-lactamase superfamily CFN12_RS08435 SM00382 ATPases associated with a variety of cellular activities CFN12_RS08440 SM00518 AP endonuclease family 2 CFN12_RS08445 SM00487 DEAD-like helicases superfamily CFN12_RS08445 SM00490 helicase superfamily c-terminal domain CFN12_RS08465 SM00400 zinc finger CFN12_RS08465 SM00493 CFN12_RS08465 CFN12_RS08475 SM00116 Domain in cystathionine beta-synthase and other proteins. CFN12_RS08535 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS08550 SM00271 DnaJ molecular chaperone homology domain CFN12_RS08570 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS08580 SM00838 Elongation factor G C-terminus CFN12_RS08595 SM00849 Metallo-beta-lactamase superfamily CFN12_RS08605 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFN12_RS08620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS08630 SM01103 CFN12_RS08630 CFN12_RS08680 SM00878 Biotin carboxylase C-terminal domain CFN12_RS08690 SM00797 Allophanate hydrolase subunit 2 CFN12_RS08695 SM00796 Allophanate hydrolase subunit 1 CFN12_RS08730 SM00732 Likely ribonuclease with RNase H fold. CFN12_RS08740 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFN12_RS08745 SM00382 ATPases associated with a variety of cellular activities CFN12_RS08750 SM00028 Tetratricopeptide repeats CFN12_RS08785 SM00382 ATPases associated with a variety of cellular activities CFN12_RS08815 SM00287 Bacterial SH3 domain homologues CFN12_RS08815 SM00646 CFN12_RS08815 CFN12_RS08825 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS08825 SM00954 Region found in RelA / SpoT proteins CFN12_RS08845 SM01323 CFN12_RS08845 CFN12_RS08860 SM00382 ATPases associated with a variety of cellular activities CFN12_RS08865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFN12_RS08970 SM01004 Delta-aminolevulinic acid dehydratase CFN12_RS09000 SM00382 ATPases associated with a variety of cellular activities CFN12_RS09000 SM00994 ClpX C4-type zinc finger CFN12_RS09000 SM01086 C-terminal, D2-small domain, of ClpB protein CFN12_RS09050 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFN12_RS09075 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFN12_RS09085 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFN12_RS09085 SM01232 CFN12_RS09085 CFN12_RS09090 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFN12_RS09090 SM00474 3'-5' exonuclease CFN12_RS09090 SM00475 5'-3' exonuclease CFN12_RS09090 SM00482 DNA polymerase A domain CFN12_RS09100 SM00387 Histidine kinase-like ATPases CFN12_RS09100 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS09105 SM00448 cheY-homologous receiver domain CFN12_RS09105 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS09115 SM01329 CFN12_RS09115 CFN12_RS09155 SM00919 Malic enzyme, NAD binding domain CFN12_RS09155 SM01274 CFN12_RS09155 CFN12_RS09160 SM00481 DNA polymerase alpha chain like domain CFN12_RS09175 SM00116 Domain in cystathionine beta-synthase and other proteins. CFN12_RS09185 SM00849 Metallo-beta-lactamase superfamily CFN12_RS09200 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CFN12_RS09200 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CFN12_RS09230 SM00981 CFN12_RS09230 CFN12_RS09250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFN12_RS09260 SM00363 S4 RNA-binding domain CFN12_RS09260 SM01390 CFN12_RS09260 CFN12_RS09305 SM00563 Phosphate acyltransferases CFN12_RS09310 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFN12_RS09315 SM00363 S4 RNA-binding domain CFN12_RS09330 SM00725 NEAr Transporter domain CFN12_RS09360 SM00354 helix_turn _helix lactose operon repressor CFN12_RS09370 SM00830 Chorismate mutase type II CFN12_RS09395 SM00843 CFN12_RS09395 CFN12_RS09425 SM00849 Metallo-beta-lactamase superfamily CFN12_RS09455 SM00363 S4 RNA-binding domain CFN12_RS09475 SM00450 Rhodanese Homology Domain CFN12_RS09490 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS09500 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS09555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFN12_RS09565 SM00226 Low molecular weight phosphatase family CFN12_RS09570 SM00047 Lysozyme subfamily 2 CFN12_RS09645 SM01321 CFN12_RS09645 CFN12_RS09660 SM01234 CFN12_RS09660 CFN12_RS09680 SM00894 Excalibur calcium-binding domain CFN12_RS09815 SM00382 ATPases associated with a variety of cellular activities CFN12_RS09830 SM01260 CFN12_RS09830 CFN12_RS09965 SM00382 ATPases associated with a variety of cellular activities CFN12_RS09995 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS10030 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS10035 SM00421 helix_turn_helix, Lux Regulon CFN12_RS10035 SM00448 cheY-homologous receiver domain CFN12_RS10090 SM00382 ATPases associated with a variety of cellular activities CFN12_RS10095 SM00062 Bacterial periplasmic substrate-binding proteins CFN12_RS10300 SM00382 ATPases associated with a variety of cellular activities CFN12_RS10310 SM00478 endonuclease III CFN12_RS10380 SM00226 Low molecular weight phosphatase family CFN12_RS10395 SM00421 helix_turn_helix, Lux Regulon CFN12_RS10395 SM00448 cheY-homologous receiver domain CFN12_RS10400 SM00387 Histidine kinase-like ATPases CFN12_RS10465 SM00479 CFN12_RS10465 CFN12_RS10485 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFN12_RS10500 SM00845 GatB domain CFN12_RS10525 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFN12_RS10525 SM00292 breast cancer carboxy-terminal domain CFN12_RS10525 SM00532 Ligase N family CFN12_RS10545 SM00998 Adenylosuccinate lyase C-terminus CFN12_RS10605 SM00710 Parallel beta-helix repeats CFN12_RS10615 SM01131 CFN12_RS10615 CFN12_RS10680 SM00382 ATPases associated with a variety of cellular activities CFN12_RS10690 SM00382 ATPases associated with a variety of cellular activities CFN12_RS10695 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS10750 SM00287 Bacterial SH3 domain homologues CFN12_RS10830 SM00635 Bacterial Ig-like domain 2 CFN12_RS10890 SM00507 HNH nucleases CFN12_RS11035 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS11040 SM00910 CFN12_RS11040 CFN12_RS11135 SM00883 Chaperonin 10 Kd subunit CFN12_RS11170 SM00793 Accessory gene regulator B CFN12_RS11175 SM00794 Staphylococcal AgrD protein CFN12_RS11185 SM00448 cheY-homologous receiver domain CFN12_RS11185 SM00850 LytTr DNA-binding domain CFN12_RS11200 SM00640 Glycosyl hydrolases family 32 CFN12_RS11205 SM00354 helix_turn _helix lactose operon repressor CFN12_RS11225 SM00881 CoA binding domain CFN12_RS11230 SM00382 ATPases associated with a variety of cellular activities CFN12_RS11240 SM00534 ATPase domain of DNA mismatch repair MUTS family CFN12_RS11290 SM00917 LeuA allosteric (dimerisation) domain CFN12_RS11295 SM01329 CFN12_RS11295 CFN12_RS11345 SM00731 SprT homologues. CFN12_RS11350 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS11350 SM00732 Likely ribonuclease with RNase H fold. CFN12_RS11370 SM00331 Sigma factor PP2C-like phosphatases CFN12_RS11370 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFN12_RS11390 SM01005 Alanine racemase, C-terminal domain CFN12_RS11435 SM00387 Histidine kinase-like ATPases CFN12_RS11435 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS11440 SM00448 cheY-homologous receiver domain CFN12_RS11440 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS11445 SM00487 DEAD-like helicases superfamily CFN12_RS11445 SM00490 helicase superfamily c-terminal domain CFN12_RS11480 SM00155 Phospholipase D. Active site motifs. CFN12_RS11485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFN12_RS11570 SM00382 ATPases associated with a variety of cellular activities CFN12_RS11630 SM00226 Low molecular weight phosphatase family CFN12_RS11645 SM00937 CFN12_RS11645 CFN12_RS11665 SM00357 Cold shock protein domain CFN12_RS11665 SM00382 ATPases associated with a variety of cellular activities CFN12_RS11665 SM00959 Rho termination factor, N-terminal domain CFN12_RS11740 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CFN12_RS11750 SM01133 CFN12_RS11750 CFN12_RS11790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFN12_RS11830 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12060 SM00829 Enoylreductase CFN12_RS12065 SM00829 Enoylreductase CFN12_RS12090 SM01133 CFN12_RS12090 CFN12_RS12105 SM00420 helix_turn_helix, Deoxyribose operon repressor CFN12_RS12105 SM01134 CFN12_RS12105 CFN12_RS12135 SM00422 helix_turn_helix, mercury resistance CFN12_RS12190 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12230 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12235 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12245 SM00662 RNA polymerases D CFN12_RS12265 SM00316 Ribosomal protein S1-like RNA-binding domain CFN12_RS12320 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CFN12_RS12325 SM01374 CFN12_RS12325 CFN12_RS12345 SM00322 K homology RNA-binding domain CFN12_RS12360 SM01382 CFN12_RS12360 CFN12_RS12360 SM01383 CFN12_RS12360 CFN12_RS12380 SM01403 CFN12_RS12380 CFN12_RS12395 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CFN12_RS12395 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CFN12_RS12395 SM00493 CFN12_RS12395 CFN12_RS12455 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS12485 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS12510 SM00852 Probable molybdopterin binding domain CFN12_RS12520 SM00852 Probable molybdopterin binding domain CFN12_RS12530 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12595 SM00988 UreE urease accessory protein, N-terminal domain CFN12_RS12635 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS12685 SM00047 Lysozyme subfamily 2 CFN12_RS12700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFN12_RS12700 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFN12_RS12715 SM00420 helix_turn_helix, Deoxyribose operon repressor CFN12_RS12870 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12960 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS12975 SM00382 ATPases associated with a variety of cellular activities CFN12_RS12985 SM00448 cheY-homologous receiver domain CFN12_RS12985 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS12990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFN12_RS12990 SM00387 Histidine kinase-like ATPases CFN12_RS12990 SM00388 His Kinase A (phosphoacceptor) domain CFN12_RS12995 SM00850 LytTr DNA-binding domain CFN12_RS13030 SM00829 Enoylreductase CFN12_RS13085 SM00342 helix_turn_helix, arabinose operon control protein CFN12_RS13135 SM00422 helix_turn_helix, mercury resistance CFN12_RS13140 SM00421 helix_turn_helix, Lux Regulon CFN12_RS13140 SM00448 cheY-homologous receiver domain CFN12_RS13145 SM00387 Histidine kinase-like ATPases CFN12_RS13170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFN12_RS13255 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13265 SM00062 Bacterial periplasmic substrate-binding proteins CFN12_RS13265 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CFN12_RS13285 SM00855 Phosphoglycerate mutase family CFN12_RS13345 SM00729 Elongator protein 3, MiaB family, Radical SAM CFN12_RS13345 SM00876 Biotin and Thiamin Synthesis associated domain CFN12_RS13370 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13375 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13410 SM00871 Bacterial transcription activator, effector binding domain CFN12_RS13490 SM00116 Domain in cystathionine beta-synthase and other proteins. CFN12_RS13490 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13535 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13580 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13585 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13720 SM00487 DEAD-like helicases superfamily CFN12_RS13720 SM00490 helicase superfamily c-terminal domain CFN12_RS13760 SM01208 CFN12_RS13760 CFN12_RS13810 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFN12_RS13810 SM00895 CFN12_RS13810 CFN12_RS13815 SM00422 helix_turn_helix, mercury resistance CFN12_RS13820 SM00954 Region found in RelA / SpoT proteins CFN12_RS13855 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS13870 SM00382 ATPases associated with a variety of cellular activities CFN12_RS13900 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS13930 SM00382 ATPases associated with a variety of cellular activities CFN12_RS14065 SM00382 ATPases associated with a variety of cellular activities CFN12_RS14065 SM01086 C-terminal, D2-small domain, of ClpB protein CFN12_RS14080 SM00899 CFN12_RS14080 CFN12_RS14105 SM01266 CFN12_RS14105 CFN12_RS14310 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CFN12_RS14495 SM00382 ATPases associated with a variety of cellular activities CFN12_RS14500 SM00387 Histidine kinase-like ATPases CFN12_RS14505 SM00448 cheY-homologous receiver domain CFN12_RS14505 SM00862 Transcriptional regulatory protein, C terminal CFN12_RS14515 SM00098 Alkaline phosphatase homologues CFN12_RS14525 SM00347 helix_turn_helix multiple antibiotic resistance protein CFN12_RS14610 SM00047 Lysozyme subfamily 2 CFN12_RS14635 SM00957 SecA DEAD-like domain CFN12_RS14635 SM00958 SecA preprotein cross-linking domain CFN12_RS14665 SM00903 Flavin reductase like domain CFN12_RS14685 SM00903 Flavin reductase like domain CFN12_RS14815 SM00382 ATPases associated with a variety of cellular activities CFN12_RS14830 SM00867 YceI-like domain CFN12_RS14840 SM00450 Rhodanese Homology Domain CFN12_RS14895 SM00382 ATPases associated with a variety of cellular activities CFN12_RS14930 SM00357 Cold shock protein domain CFN12_RS14935 SM00530 Helix-turn-helix XRE-family like proteins CFN12_RS14950 SM00470 ParB-like nuclease domain CFN12_RS14960 SM01228 CFN12_RS14960