RT44_RS00005 SM00382 ATPases associated with a variety of cellular activities RT44_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RT44_RS00010 SM00480 DNA polymerase III beta subunit RT44_RS00025 SM00387 Histidine kinase-like ATPases RT44_RS00025 SM00433 TopoisomeraseII RT44_RS00030 SM00434 DNA Topoisomerase IV RT44_RS00070 SM00267 diguanylate cyclase RT44_RS00085 SM00788 Adenylosuccinate synthetase RT44_RS00100 SM00448 cheY-homologous receiver domain RT44_RS00100 SM00862 Transcriptional regulatory protein, C terminal RT44_RS00105 SM00091 PAS domain RT44_RS00105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RT44_RS00105 SM00387 Histidine kinase-like ATPases RT44_RS00105 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS00120 SM00849 Metallo-beta-lactamase superfamily RT44_RS00215 SM00857 Resolvase, N terminal domain RT44_RS00295 SM00857 Resolvase, N terminal domain RT44_RS00300 SM00857 Resolvase, N terminal domain RT44_RS00385 SM00148 Phospholipase C, catalytic domain (part); domain X RT44_RS00420 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS00460 SM00257 Lysin motif RT44_RS00465 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS00525 SM00470 ParB-like nuclease domain RT44_RS00540 SM00822 RT44_RS00540 RT44_RS00585 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS00605 SM01133 RT44_RS00605 RT44_RS00625 SM00382 ATPases associated with a variety of cellular activities RT44_RS00630 SM00062 Bacterial periplasmic substrate-binding proteins RT44_RS00745 SM00984 UDP binding domain RT44_RS00790 SM00382 ATPases associated with a variety of cellular activities RT44_RS00850 SM00859 Semialdehyde dehydrogenase, NAD binding domain RT44_RS00910 SM00487 DEAD-like helicases superfamily RT44_RS00930 SM00382 ATPases associated with a variety of cellular activities RT44_RS00970 SM00382 ATPases associated with a variety of cellular activities RT44_RS01015 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS01015 SM00448 cheY-homologous receiver domain RT44_RS01090 SM00882 Coenzyme A transferase RT44_RS01175 SM00829 Enoylreductase RT44_RS01185 SM00829 Enoylreductase RT44_RS01235 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RT44_RS01235 SM00387 Histidine kinase-like ATPases RT44_RS01240 SM00448 cheY-homologous receiver domain RT44_RS01240 SM00850 LytTr DNA-binding domain RT44_RS01255 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS01255 SM00866 RT44_RS01255 RT44_RS01295 SM00354 helix_turn _helix lactose operon repressor RT44_RS01330 SM00382 ATPases associated with a variety of cellular activities RT44_RS01495 SM00382 ATPases associated with a variety of cellular activities RT44_RS01525 SM01130 RT44_RS01525 RT44_RS01580 SM00506 Appr-1"-p processing enzyme RT44_RS01620 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS01700 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS01710 SM00382 ATPases associated with a variety of cellular activities RT44_RS01760 SM00470 ParB-like nuclease domain RT44_RS01840 SM00855 Phosphoglycerate mutase family RT44_RS01910 SM00116 Domain in cystathionine beta-synthase and other proteins. RT44_RS01910 SM01240 RT44_RS01910 RT44_RS02145 SM00833 Cobalamin synthesis protein cobW C-terminal domain RT44_RS02175 SM00014 Acid phosphatase homologues RT44_RS02205 SM00382 ATPases associated with a variety of cellular activities RT44_RS02205 SM00930 RT44_RS02205 RT44_RS02220 SM00257 Lysin motif RT44_RS02275 SM00642 Alpha-amylase domain RT44_RS02280 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS02280 SM00866 RT44_RS02280 RT44_RS02295 SM00382 ATPases associated with a variety of cellular activities RT44_RS02305 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RT44_RS02305 SM00493 RT44_RS02305 RT44_RS02370 SM00465 GIY-YIG type nucleases (URI domain) RT44_RS02395 SM00493 RT44_RS02395 RT44_RS02400 SM00650 Ribosomal RNA adenine dimethylases RT44_RS02440 SM01400 RT44_RS02440 RT44_RS02460 SM00487 DEAD-like helicases superfamily RT44_RS02460 SM00490 helicase superfamily c-terminal domain RT44_RS02460 SM00982 RT44_RS02460 RT44_RS02460 SM01058 CarD-like/TRCF domain RT44_RS02475 SM00363 S4 RNA-binding domain RT44_RS02485 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS02490 SM00977 TilS substrate C-terminal domain RT44_RS02500 SM00382 ATPases associated with a variety of cellular activities RT44_RS02520 SM00905 Dihydroneopterin aldolase RT44_RS02600 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS02635 SM00382 ATPases associated with a variety of cellular activities RT44_RS02635 SM01086 C-terminal, D2-small domain, of ClpB protein RT44_RS02645 SM00382 ATPases associated with a variety of cellular activities RT44_RS02650 SM00670 Large family of predicted nucleotide-binding domains RT44_RS02665 SM00840 RT44_RS02665 RT44_RS02675 SM00967 RNA 2'-O ribose methyltransferase substrate binding RT44_RS02695 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RT44_RS02695 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RT44_RS02700 SM00649 Ribosomal protein L11/L12 RT44_RS02730 SM00663 RNA polymerase I subunit A N-terminus RT44_RS02750 SM00838 Elongation factor G C-terminus RT44_RS02750 SM00889 Elongation factor G, domain IV RT44_RS02865 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RT44_RS02915 SM00986 Uracil DNA glycosylase superfamily RT44_RS02915 SM00987 UreE urease accessory protein, C-terminal domain RT44_RS03040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS03050 SM00829 Enoylreductase RT44_RS03065 SM00836 DALR anticodon binding domain RT44_RS03065 SM01016 Arginyl tRNA synthetase N terminal dom RT44_RS03070 SM00478 endonuclease III RT44_RS03185 SM00382 ATPases associated with a variety of cellular activities RT44_RS03190 SM00529 Helix-turn-helix diphteria tox regulatory element RT44_RS03190 SM00899 RT44_RS03190 RT44_RS03205 SM00382 ATPases associated with a variety of cellular activities RT44_RS03235 SM00382 ATPases associated with a variety of cellular activities RT44_RS03255 SM00382 ATPases associated with a variety of cellular activities RT44_RS03275 SM01120 RT44_RS03275 RT44_RS03320 SM00448 cheY-homologous receiver domain RT44_RS03320 SM00862 Transcriptional regulatory protein, C terminal RT44_RS03325 SM00387 Histidine kinase-like ATPases RT44_RS03330 SM00382 ATPases associated with a variety of cellular activities RT44_RS03350 SM00257 Lysin motif RT44_RS03360 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS03455 SM00382 ATPases associated with a variety of cellular activities RT44_RS03460 SM00382 ATPases associated with a variety of cellular activities RT44_RS03465 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS03470 SM00833 Cobalamin synthesis protein cobW C-terminal domain RT44_RS03525 SM00420 helix_turn_helix, Deoxyribose operon repressor RT44_RS03525 SM01134 RT44_RS03525 RT44_RS03550 SM01091 Transporter associated domain RT44_RS03565 SM00387 Histidine kinase-like ATPases RT44_RS03565 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS03570 SM00448 cheY-homologous receiver domain RT44_RS03570 SM00862 Transcriptional regulatory protein, C terminal RT44_RS03625 SM00796 Allophanate hydrolase subunit 1 RT44_RS03630 SM00797 Allophanate hydrolase subunit 2 RT44_RS03645 SM00382 ATPases associated with a variety of cellular activities RT44_RS03650 SM00341 Helicase and RNase D C-terminal RT44_RS03650 SM00487 DEAD-like helicases superfamily RT44_RS03650 SM00490 helicase superfamily c-terminal domain RT44_RS03650 SM00956 RT44_RS03650 RT44_RS03655 SM00382 ATPases associated with a variety of cellular activities RT44_RS03675 SM00046 Diacylglycerol kinase catalytic domain (presumed) RT44_RS03730 SM00382 ATPases associated with a variety of cellular activities RT44_RS03785 SM00267 diguanylate cyclase RT44_RS03805 SM00487 DEAD-like helicases superfamily RT44_RS03805 SM00490 helicase superfamily c-terminal domain RT44_RS03820 SM00957 SecA DEAD-like domain RT44_RS03820 SM00958 SecA preprotein cross-linking domain RT44_RS03830 SM00937 RT44_RS03830 RT44_RS03840 SM00257 Lysin motif RT44_RS03855 SM00487 DEAD-like helicases superfamily RT44_RS03855 SM00490 helicase superfamily c-terminal domain RT44_RS03880 SM00028 Tetratricopeptide repeats RT44_RS03935 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RT44_RS03955 SM01192 RT44_RS03955 RT44_RS03955 SM01193 RT44_RS03955 RT44_RS03975 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS03975 SM00357 Cold shock protein domain RT44_RS03975 SM00955 RT44_RS03975 RT44_RS04040 SM00318 Staphylococcal nuclease homologues RT44_RS04045 SM00357 Cold shock protein domain RT44_RS04085 SM00855 Phosphoglycerate mutase family RT44_RS04140 SM00493 RT44_RS04140 RT44_RS04150 SM00382 ATPases associated with a variety of cellular activities RT44_RS04150 SM00930 RT44_RS04150 RT44_RS04175 SM00382 ATPases associated with a variety of cellular activities RT44_RS04240 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS04385 SM01298 RT44_RS04385 RT44_RS04395 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS04410 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RT44_RS04500 SM00382 ATPases associated with a variety of cellular activities RT44_RS04500 SM01086 C-terminal, D2-small domain, of ClpB protein RT44_RS04545 SM00825 Beta-ketoacyl synthase RT44_RS04565 SM00382 ATPases associated with a variety of cellular activities RT44_RS04570 SM00382 ATPases associated with a variety of cellular activities RT44_RS04585 SM00382 ATPases associated with a variety of cellular activities RT44_RS04590 SM00382 ATPases associated with a variety of cellular activities RT44_RS04640 SM01118 RT44_RS04640 RT44_RS04650 SM00954 Region found in RelA / SpoT proteins RT44_RS04665 SM00116 Domain in cystathionine beta-synthase and other proteins. RT44_RS04665 SM00924 MgtE intracellular N domain RT44_RS04730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RT44_RS04760 SM00914 RT44_RS04760 RT44_RS04800 SM00382 ATPases associated with a variety of cellular activities RT44_RS04895 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS04905 SM00047 Lysozyme subfamily 2 RT44_RS04905 SM00644 RT44_RS04905 RT44_RS04970 SM01001 AIR carboxylase RT44_RS04990 SM01211 RT44_RS04990 RT44_RS05015 SM00798 AICARFT/IMPCHase bienzyme RT44_RS05015 SM00851 MGS-like domain RT44_RS05020 SM01209 RT44_RS05020 RT44_RS05020 SM01210 RT44_RS05020 RT44_RS05030 SM00382 ATPases associated with a variety of cellular activities RT44_RS05095 SM00849 Metallo-beta-lactamase superfamily RT44_RS05125 SM00861 Transketolase, pyrimidine binding domain RT44_RS05145 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS05150 SM00382 ATPases associated with a variety of cellular activities RT44_RS05200 SM00838 Elongation factor G C-terminus RT44_RS05225 SM00878 Biotin carboxylase C-terminal domain RT44_RS05305 SM00725 NEAr Transporter domain RT44_RS05310 SM00725 NEAr Transporter domain RT44_RS05315 SM00725 NEAr Transporter domain RT44_RS05350 SM00967 RNA 2'-O ribose methyltransferase substrate binding RT44_RS05360 SM00873 B3/4 domain RT44_RS05360 SM00874 tRNA synthetase B5 domain RT44_RS05360 SM00896 Ferredoxin-fold anticodon binding domain RT44_RS05380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RT44_RS05380 SM00481 DNA polymerase alpha chain like domain RT44_RS05380 SM00483 DNA polymerase X family RT44_RS05385 SM00463 Small MutS-related domain RT44_RS05385 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RT44_RS05385 SM00534 ATPase domain of DNA mismatch repair MUTS family RT44_RS05400 SM00465 GIY-YIG type nucleases (URI domain) RT44_RS05610 SM00740 RT44_RS05610 RT44_RS05630 SM00842 Cell division protein FtsA RT44_RS05635 SM00864 Tubulin/FtsZ family, GTPase domain RT44_RS05635 SM00865 Tubulin/FtsZ family, C-terminal domain RT44_RS05660 SM00363 S4 RNA-binding domain RT44_RS05690 SM00363 S4 RNA-binding domain RT44_RS05715 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RT44_RS05720 SM00851 MGS-like domain RT44_RS05720 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RT44_RS05720 SM01209 RT44_RS05720 RT44_RS05725 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RT44_RS05750 SM00072 Guanylate kinase homologues. RT44_RS05755 SM01409 RT44_RS05755 RT44_RS05765 SM00487 DEAD-like helicases superfamily RT44_RS05765 SM00490 helicase superfamily c-terminal domain RT44_RS05800 SM00331 Sigma factor PP2C-like phosphatases RT44_RS05800 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RT44_RS05805 SM00220 Serine/Threonine protein kinases, catalytic domain RT44_RS05805 SM00740 RT44_RS05805 RT44_RS05820 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RT44_RS05835 SM01120 RT44_RS05835 RT44_RS05835 SM01121 RT44_RS05835 RT44_RS05840 SM00487 DEAD-like helicases superfamily RT44_RS05840 SM00490 helicase superfamily c-terminal domain RT44_RS05855 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RT44_RS05860 SM00822 RT44_RS05860 RT44_RS05875 SM00358 Double-stranded RNA binding motif RT44_RS05875 SM00535 Ribonuclease III family RT44_RS05880 SM00968 SMC proteins Flexible Hinge Domain RT44_RS05885 SM00382 ATPases associated with a variety of cellular activities RT44_RS05885 SM00962 SRP54-type protein, GTPase domain RT44_RS05885 SM00963 SRP54-type protein, helical bundle domain RT44_RS05895 SM00382 ATPases associated with a variety of cellular activities RT44_RS05895 SM00962 SRP54-type protein, GTPase domain RT44_RS05895 SM00963 SRP54-type protein, helical bundle domain RT44_RS05940 SM00881 CoA binding domain RT44_RS05945 SM00257 Lysin motif RT44_RS05960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RT44_RS05960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RT44_RS05960 SM00493 RT44_RS05960 RT44_RS05980 SM00382 ATPases associated with a variety of cellular activities RT44_RS05980 SM01086 C-terminal, D2-small domain, of ClpB protein RT44_RS06040 SM00479 RT44_RS06040 RT44_RS06040 SM00481 DNA polymerase alpha chain like domain RT44_RS06050 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS06050 SM00322 K homology RNA-binding domain RT44_RS06080 SM00904 Riboflavin kinase RT44_RS06085 SM01387 RT44_RS06085 RT44_RS06090 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS06090 SM00322 K homology RNA-binding domain RT44_RS06095 SM00849 Metallo-beta-lactamase superfamily RT44_RS06100 SM00382 ATPases associated with a variety of cellular activities RT44_RS06100 SM00843 RT44_RS06100 RT44_RS06105 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS06105 SM00866 RT44_RS06105 RT44_RS06130 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS06140 SM00852 Probable molybdopterin binding domain RT44_RS06145 SM00382 ATPases associated with a variety of cellular activities RT44_RS06150 SM00322 K homology RNA-binding domain RT44_RS06150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS06180 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS06195 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RT44_RS06195 SM00534 ATPase domain of DNA mismatch repair MUTS family RT44_RS06200 SM00853 MutL C terminal dimerisation domain RT44_RS06200 SM01340 RT44_RS06200 RT44_RS06255 SM00422 helix_turn_helix, mercury resistance RT44_RS06260 SM01230 RT44_RS06260 RT44_RS06345 SM00155 Phospholipase D. Active site motifs. RT44_RS06355 SM00318 Staphylococcal nuclease homologues RT44_RS06410 SM01060 RT44_RS06410 RT44_RS06425 SM01240 RT44_RS06425 RT44_RS06455 SM00861 Transketolase, pyrimidine binding domain RT44_RS06510 SM01207 RT44_RS06510 RT44_RS06515 SM00387 Histidine kinase-like ATPases RT44_RS06515 SM00433 TopoisomeraseII RT44_RS06520 SM00434 DNA Topoisomerase IV RT44_RS06535 SM01061 CAT RNA binding domain RT44_RS06645 SM00382 ATPases associated with a variety of cellular activities RT44_RS06650 SM00382 ATPases associated with a variety of cellular activities RT44_RS06685 SM00382 ATPases associated with a variety of cellular activities RT44_RS06720 SM00382 ATPases associated with a variety of cellular activities RT44_RS06730 SM00859 Semialdehyde dehydrogenase, NAD binding domain RT44_RS06735 SM01130 RT44_RS06735 RT44_RS06755 SM01005 Alanine racemase, C-terminal domain RT44_RS06770 SM00357 Cold shock protein domain RT44_RS06805 SM00327 von Willebrand factor (vWF) type A domain RT44_RS06830 SM00861 Transketolase, pyrimidine binding domain RT44_RS06835 SM00387 Histidine kinase-like ATPases RT44_RS06835 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS06840 SM00448 cheY-homologous receiver domain RT44_RS06840 SM00862 Transcriptional regulatory protein, C terminal RT44_RS06855 SM00014 Acid phosphatase homologues RT44_RS06875 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RT44_RS06875 SM00245 tail specific protease RT44_RS06925 SM00567 E-Z type HEAT repeats RT44_RS06925 SM00932 Scaffold protein Nfu/NifU N terminal RT44_RS06930 SM00932 Scaffold protein Nfu/NifU N terminal RT44_RS06965 SM00844 GA module RT44_RS06985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RT44_RS06985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RT44_RS06990 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RT44_RS06990 SM00475 5'-3' exonuclease RT44_RS07015 SM00981 RT44_RS07015 RT44_RS07055 SM00478 endonuclease III RT44_RS07055 SM00525 RT44_RS07055 RT44_RS07070 SM00479 RT44_RS07070 RT44_RS07070 SM00491 RT44_RS07070 RT44_RS07105 SM00914 RT44_RS07105 RT44_RS07110 SM00028 Tetratricopeptide repeats RT44_RS07135 SM00562 RT44_RS07135 RT44_RS07160 SM00411 bacterial (prokaryotic) histone like domain RT44_RS07175 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS07190 SM00870 RT44_RS07190 RT44_RS07205 SM00257 Lysin motif RT44_RS07210 SM00487 DEAD-like helicases superfamily RT44_RS07210 SM00490 helicase superfamily c-terminal domain RT44_RS07270 SM00287 Bacterial SH3 domain homologues RT44_RS07270 SM00646 RT44_RS07270 RT44_RS07335 SM00635 Bacterial Ig-like domain 2 RT44_RS07390 SM00507 HNH nucleases RT44_RS07400 SM00487 DEAD-like helicases superfamily RT44_RS07405 SM00990 RT44_RS07405 RT44_RS07485 SM00482 DNA polymerase A domain RT44_RS07535 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS07540 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS07590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RT44_RS07590 SM00387 Histidine kinase-like ATPases RT44_RS07590 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS07595 SM00448 cheY-homologous receiver domain RT44_RS07595 SM00862 Transcriptional regulatory protein, C terminal RT44_RS07600 SM00363 S4 RNA-binding domain RT44_RS07665 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS07665 SM00871 Bacterial transcription activator, effector binding domain RT44_RS07670 SM00642 Alpha-amylase domain RT44_RS07675 SM00354 helix_turn _helix lactose operon repressor RT44_RS07690 SM01350 RT44_RS07690 RT44_RS07720 SM00861 Transketolase, pyrimidine binding domain RT44_RS07770 SM00878 Biotin carboxylase C-terminal domain RT44_RS07780 SM00841 Elongation factor P, C-terminal RT44_RS07780 SM01185 RT44_RS07780 RT44_RS07805 SM00450 Rhodanese Homology Domain RT44_RS07865 SM00849 Metallo-beta-lactamase superfamily RT44_RS07920 SM00382 ATPases associated with a variety of cellular activities RT44_RS07925 SM00518 AP endonuclease family 2 RT44_RS07930 SM00487 DEAD-like helicases superfamily RT44_RS07930 SM00490 helicase superfamily c-terminal domain RT44_RS07950 SM00400 zinc finger RT44_RS07950 SM00493 RT44_RS07950 RT44_RS07960 SM00116 Domain in cystathionine beta-synthase and other proteins. RT44_RS08020 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS08035 SM00271 DnaJ molecular chaperone homology domain RT44_RS08055 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS08065 SM00838 Elongation factor G C-terminus RT44_RS08080 SM00849 Metallo-beta-lactamase superfamily RT44_RS08090 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RT44_RS08105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS08115 SM01103 RT44_RS08115 RT44_RS08170 SM00878 Biotin carboxylase C-terminal domain RT44_RS08180 SM00797 Allophanate hydrolase subunit 2 RT44_RS08185 SM00796 Allophanate hydrolase subunit 1 RT44_RS08220 SM00732 Likely ribonuclease with RNase H fold. RT44_RS08230 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RT44_RS08235 SM00382 ATPases associated with a variety of cellular activities RT44_RS08240 SM00028 Tetratricopeptide repeats RT44_RS08280 SM00382 ATPases associated with a variety of cellular activities RT44_RS08305 SM00287 Bacterial SH3 domain homologues RT44_RS08305 SM00646 RT44_RS08305 RT44_RS08315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS08315 SM00954 Region found in RelA / SpoT proteins RT44_RS08335 SM01323 RT44_RS08335 RT44_RS08350 SM00382 ATPases associated with a variety of cellular activities RT44_RS08355 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RT44_RS08455 SM01004 Delta-aminolevulinic acid dehydratase RT44_RS08485 SM00382 ATPases associated with a variety of cellular activities RT44_RS08485 SM00994 ClpX C4-type zinc finger RT44_RS08485 SM01086 C-terminal, D2-small domain, of ClpB protein RT44_RS08535 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RT44_RS08560 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RT44_RS08570 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RT44_RS08570 SM01232 RT44_RS08570 RT44_RS08575 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RT44_RS08575 SM00474 3'-5' exonuclease RT44_RS08575 SM00475 5'-3' exonuclease RT44_RS08575 SM00482 DNA polymerase A domain RT44_RS08585 SM00387 Histidine kinase-like ATPases RT44_RS08585 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS08590 SM00448 cheY-homologous receiver domain RT44_RS08590 SM00862 Transcriptional regulatory protein, C terminal RT44_RS08600 SM01329 RT44_RS08600 RT44_RS08635 SM00919 Malic enzyme, NAD binding domain RT44_RS08635 SM01274 RT44_RS08635 RT44_RS08640 SM00481 DNA polymerase alpha chain like domain RT44_RS08650 SM00116 Domain in cystathionine beta-synthase and other proteins. RT44_RS08660 SM00849 Metallo-beta-lactamase superfamily RT44_RS08675 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RT44_RS08675 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RT44_RS08705 SM00981 RT44_RS08705 RT44_RS08725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RT44_RS08730 SM00363 S4 RNA-binding domain RT44_RS08730 SM01390 RT44_RS08730 RT44_RS08775 SM00563 Phosphate acyltransferases RT44_RS08780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RT44_RS08785 SM00363 S4 RNA-binding domain RT44_RS08800 SM00725 NEAr Transporter domain RT44_RS08830 SM00354 helix_turn _helix lactose operon repressor RT44_RS08840 SM00830 Chorismate mutase type II RT44_RS08865 SM00843 RT44_RS08865 RT44_RS08895 SM00849 Metallo-beta-lactamase superfamily RT44_RS08925 SM00363 S4 RNA-binding domain RT44_RS08945 SM00450 Rhodanese Homology Domain RT44_RS08960 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS08970 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS09015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RT44_RS09025 SM00047 Lysozyme subfamily 2 RT44_RS09105 SM01234 RT44_RS09105 RT44_RS09125 SM00894 Excalibur calcium-binding domain RT44_RS09240 SM00382 ATPases associated with a variety of cellular activities RT44_RS09255 SM01260 RT44_RS09255 RT44_RS09380 SM00382 ATPases associated with a variety of cellular activities RT44_RS09405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS09435 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS09440 SM00421 helix_turn_helix, Lux Regulon RT44_RS09440 SM00448 cheY-homologous receiver domain RT44_RS09485 SM00382 ATPases associated with a variety of cellular activities RT44_RS09490 SM00062 Bacterial periplasmic substrate-binding proteins RT44_RS09680 SM00382 ATPases associated with a variety of cellular activities RT44_RS09690 SM00478 endonuclease III RT44_RS09760 SM00226 Low molecular weight phosphatase family RT44_RS09775 SM00421 helix_turn_helix, Lux Regulon RT44_RS09775 SM00448 cheY-homologous receiver domain RT44_RS09780 SM00387 Histidine kinase-like ATPases RT44_RS09850 SM00479 RT44_RS09850 RT44_RS09870 SM00046 Diacylglycerol kinase catalytic domain (presumed) RT44_RS09885 SM00845 GatB domain RT44_RS09910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RT44_RS09910 SM00292 breast cancer carboxy-terminal domain RT44_RS09910 SM00532 Ligase N family RT44_RS09930 SM00998 Adenylosuccinate lyase C-terminus RT44_RS09985 SM00710 Parallel beta-helix repeats RT44_RS09995 SM01131 RT44_RS09995 RT44_RS10055 SM00382 ATPases associated with a variety of cellular activities RT44_RS10065 SM00382 ATPases associated with a variety of cellular activities RT44_RS10070 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS10125 SM00287 Bacterial SH3 domain homologues RT44_RS10195 SM00635 Bacterial Ig-like domain 2 RT44_RS10255 SM00507 HNH nucleases RT44_RS10395 SM01040 BRO family, N-terminal domain RT44_RS10405 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS10410 SM00910 RT44_RS10410 RT44_RS10470 SM00883 Chaperonin 10 Kd subunit RT44_RS10500 SM00793 Accessory gene regulator B RT44_RS10505 SM00794 Staphylococcal AgrD protein RT44_RS10515 SM00448 cheY-homologous receiver domain RT44_RS10515 SM00850 LytTr DNA-binding domain RT44_RS10530 SM00640 Glycosyl hydrolases family 32 RT44_RS10535 SM00354 helix_turn _helix lactose operon repressor RT44_RS10555 SM00881 CoA binding domain RT44_RS10560 SM00382 ATPases associated with a variety of cellular activities RT44_RS10570 SM00534 ATPase domain of DNA mismatch repair MUTS family RT44_RS10620 SM00917 LeuA allosteric (dimerisation) domain RT44_RS10625 SM01329 RT44_RS10625 RT44_RS10670 SM00731 SprT homologues. RT44_RS10675 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS10675 SM00732 Likely ribonuclease with RNase H fold. RT44_RS10695 SM00331 Sigma factor PP2C-like phosphatases RT44_RS10695 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RT44_RS10715 SM01005 Alanine racemase, C-terminal domain RT44_RS10760 SM00387 Histidine kinase-like ATPases RT44_RS10760 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS10765 SM00448 cheY-homologous receiver domain RT44_RS10765 SM00862 Transcriptional regulatory protein, C terminal RT44_RS10770 SM00487 DEAD-like helicases superfamily RT44_RS10770 SM00490 helicase superfamily c-terminal domain RT44_RS10805 SM00155 Phospholipase D. Active site motifs. RT44_RS10810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RT44_RS10885 SM00382 ATPases associated with a variety of cellular activities RT44_RS10945 SM00226 Low molecular weight phosphatase family RT44_RS10960 SM00937 RT44_RS10960 RT44_RS10975 SM00357 Cold shock protein domain RT44_RS10975 SM00382 ATPases associated with a variety of cellular activities RT44_RS10975 SM00959 Rho termination factor, N-terminal domain RT44_RS11070 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RT44_RS11080 SM01133 RT44_RS11080 RT44_RS11120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RT44_RS11145 SM00382 ATPases associated with a variety of cellular activities RT44_RS11350 SM00829 Enoylreductase RT44_RS11355 SM00829 Enoylreductase RT44_RS11380 SM01133 RT44_RS11380 RT44_RS11400 SM00420 helix_turn_helix, Deoxyribose operon repressor RT44_RS11400 SM01134 RT44_RS11400 RT44_RS11425 SM00422 helix_turn_helix, mercury resistance RT44_RS11530 SM00382 ATPases associated with a variety of cellular activities RT44_RS11535 SM00382 ATPases associated with a variety of cellular activities RT44_RS11545 SM00662 RNA polymerases D RT44_RS11565 SM00316 Ribosomal protein S1-like RNA-binding domain RT44_RS11620 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RT44_RS11625 SM01374 RT44_RS11625 RT44_RS11645 SM00322 K homology RNA-binding domain RT44_RS11660 SM01382 RT44_RS11660 RT44_RS11660 SM01383 RT44_RS11660 RT44_RS11680 SM01403 RT44_RS11680 RT44_RS11695 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RT44_RS11695 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RT44_RS11695 SM00493 RT44_RS11695 RT44_RS11755 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS11785 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS11810 SM00852 Probable molybdopterin binding domain RT44_RS11820 SM00852 Probable molybdopterin binding domain RT44_RS11830 SM00382 ATPases associated with a variety of cellular activities RT44_RS11895 SM00988 UreE urease accessory protein, N-terminal domain RT44_RS11935 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS11985 SM00047 Lysozyme subfamily 2 RT44_RS12000 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RT44_RS12000 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RT44_RS12015 SM00420 helix_turn_helix, Deoxyribose operon repressor RT44_RS12160 SM00382 ATPases associated with a variety of cellular activities RT44_RS12245 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS12255 SM00382 ATPases associated with a variety of cellular activities RT44_RS12265 SM00448 cheY-homologous receiver domain RT44_RS12265 SM00862 Transcriptional regulatory protein, C terminal RT44_RS12270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RT44_RS12270 SM00387 Histidine kinase-like ATPases RT44_RS12270 SM00388 His Kinase A (phosphoacceptor) domain RT44_RS12275 SM00850 LytTr DNA-binding domain RT44_RS12310 SM00829 Enoylreductase RT44_RS12365 SM00342 helix_turn_helix, arabinose operon control protein RT44_RS12390 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS12405 SM00421 helix_turn_helix, Lux Regulon RT44_RS12405 SM00448 cheY-homologous receiver domain RT44_RS12410 SM00387 Histidine kinase-like ATPases RT44_RS12435 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RT44_RS12515 SM00382 ATPases associated with a variety of cellular activities RT44_RS12525 SM00062 Bacterial periplasmic substrate-binding proteins RT44_RS12525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RT44_RS12540 SM00855 Phosphoglycerate mutase family RT44_RS12595 SM00729 Elongator protein 3, MiaB family, Radical SAM RT44_RS12595 SM00876 Biotin and Thiamin Synthesis associated domain RT44_RS12620 SM00382 ATPases associated with a variety of cellular activities RT44_RS12625 SM00382 ATPases associated with a variety of cellular activities RT44_RS12660 SM00871 Bacterial transcription activator, effector binding domain RT44_RS12740 SM00116 Domain in cystathionine beta-synthase and other proteins. RT44_RS12740 SM00382 ATPases associated with a variety of cellular activities RT44_RS12775 SM00382 ATPases associated with a variety of cellular activities RT44_RS12820 SM00382 ATPases associated with a variety of cellular activities RT44_RS12825 SM00382 ATPases associated with a variety of cellular activities RT44_RS12920 SM00487 DEAD-like helicases superfamily RT44_RS12920 SM00490 helicase superfamily c-terminal domain RT44_RS12955 SM01208 RT44_RS12955 RT44_RS13005 SM00345 helix_turn_helix gluconate operon transcriptional repressor RT44_RS13005 SM00895 RT44_RS13005 RT44_RS13010 SM00422 helix_turn_helix, mercury resistance RT44_RS13015 SM00954 Region found in RelA / SpoT proteins RT44_RS13050 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS13055 SM00382 ATPases associated with a variety of cellular activities RT44_RS13090 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS13120 SM00382 ATPases associated with a variety of cellular activities RT44_RS13245 SM00382 ATPases associated with a variety of cellular activities RT44_RS13245 SM01086 C-terminal, D2-small domain, of ClpB protein RT44_RS13260 SM00899 RT44_RS13260 RT44_RS13285 SM01266 RT44_RS13285 RT44_RS13475 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RT44_RS13660 SM00382 ATPases associated with a variety of cellular activities RT44_RS13665 SM00387 Histidine kinase-like ATPases RT44_RS13670 SM00448 cheY-homologous receiver domain RT44_RS13670 SM00862 Transcriptional regulatory protein, C terminal RT44_RS13685 SM00098 Alkaline phosphatase homologues RT44_RS13690 SM00347 helix_turn_helix multiple antibiotic resistance protein RT44_RS13775 SM00047 Lysozyme subfamily 2 RT44_RS13800 SM00957 SecA DEAD-like domain RT44_RS13800 SM00958 SecA preprotein cross-linking domain RT44_RS13830 SM00903 Flavin reductase like domain RT44_RS13850 SM00903 Flavin reductase like domain RT44_RS13970 SM00382 ATPases associated with a variety of cellular activities RT44_RS13985 SM00867 YceI-like domain RT44_RS13995 SM00450 Rhodanese Homology Domain RT44_RS14050 SM00382 ATPases associated with a variety of cellular activities RT44_RS14065 SM00357 Cold shock protein domain RT44_RS14070 SM00530 Helix-turn-helix XRE-family like proteins RT44_RS14085 SM00470 ParB-like nuclease domain RT44_RS14095 SM01228 RT44_RS14095