SAGV88_RS00015 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS00015 SM00760 Bacterial dnaA protein helix-turn-helix domain SAGV88_RS00020 SM00480 DNA polymerase III beta subunit SAGV88_RS00035 SM00387 Histidine kinase-like ATPases SAGV88_RS00035 SM00433 TopoisomeraseII SAGV88_RS00040 SM00434 DNA Topoisomerase IV SAGV88_RS00080 SM00267 diguanylate cyclase SAGV88_RS00095 SM00788 Adenylosuccinate synthetase SAGV88_RS00110 SM00448 cheY-homologous receiver domain SAGV88_RS00110 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS00115 SM00091 PAS domain SAGV88_RS00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAGV88_RS00115 SM00387 Histidine kinase-like ATPases SAGV88_RS00115 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS00130 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS00175 SM00857 Resolvase, N terminal domain SAGV88_RS00220 SM00650 Ribosomal RNA adenine dimethylases SAGV88_RS00280 SM00422 helix_turn_helix, mercury resistance SAGV88_RS00355 SM00450 Rhodanese Homology Domain SAGV88_RS00360 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS00365 SM00450 Rhodanese Homology Domain SAGV88_RS00390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SAGV88_RS00430 SM00857 Resolvase, N terminal domain SAGV88_RS00435 SM00857 Resolvase, N terminal domain SAGV88_RS00465 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS00540 SM00148 Phospholipase C, catalytic domain (part); domain X SAGV88_RS00550 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS00585 SM00257 Lysin motif SAGV88_RS00590 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS00650 SM00470 ParB-like nuclease domain SAGV88_RS00665 SM00822 SAGV88_RS00665 SAGV88_RS00710 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS00730 SM01133 SAGV88_RS00730 SAGV88_RS00750 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS00755 SM00062 Bacterial periplasmic substrate-binding proteins SAGV88_RS00775 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS00855 SM00984 UDP binding domain SAGV88_RS00895 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS00955 SM00859 Semialdehyde dehydrogenase, NAD binding domain SAGV88_RS01015 SM00487 DEAD-like helicases superfamily SAGV88_RS01025 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS01065 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS01110 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS01110 SM00448 cheY-homologous receiver domain SAGV88_RS01185 SM00882 Coenzyme A transferase SAGV88_RS01270 SM00829 Enoylreductase SAGV88_RS01280 SM00829 Enoylreductase SAGV88_RS01335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SAGV88_RS01335 SM00387 Histidine kinase-like ATPases SAGV88_RS01340 SM00448 cheY-homologous receiver domain SAGV88_RS01340 SM00850 LytTr DNA-binding domain SAGV88_RS01360 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS01360 SM00866 SAGV88_RS01360 SAGV88_RS01405 SM00354 helix_turn _helix lactose operon repressor SAGV88_RS01435 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS01615 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS01645 SM01130 SAGV88_RS01645 SAGV88_RS01700 SM00506 Appr-1"-p processing enzyme SAGV88_RS01740 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS01820 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS01830 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS01960 SM00470 ParB-like nuclease domain SAGV88_RS02045 SM00855 Phosphoglycerate mutase family SAGV88_RS02115 SM00116 Domain in cystathionine beta-synthase and other proteins. SAGV88_RS02115 SM01240 SAGV88_RS02115 SAGV88_RS02145 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS02150 SM00889 Elongation factor G, domain IV SAGV88_RS02185 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02215 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS02445 SM00833 Cobalamin synthesis protein cobW C-terminal domain SAGV88_RS02475 SM00014 Acid phosphatase homologues SAGV88_RS02505 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02505 SM00930 SAGV88_RS02505 SAGV88_RS02520 SM00257 Lysin motif SAGV88_RS02575 SM00642 Alpha-amylase domain SAGV88_RS02580 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS02580 SM00866 SAGV88_RS02580 SAGV88_RS02605 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAGV88_RS02615 SM00493 SAGV88_RS02615 SAGV88_RS02680 SM00465 GIY-YIG type nucleases (URI domain) SAGV88_RS02705 SM00493 SAGV88_RS02705 SAGV88_RS02710 SM00650 Ribosomal RNA adenine dimethylases SAGV88_RS02750 SM01400 SAGV88_RS02750 SAGV88_RS02770 SM00487 DEAD-like helicases superfamily SAGV88_RS02770 SM00490 helicase superfamily c-terminal domain SAGV88_RS02770 SM00982 SAGV88_RS02770 SAGV88_RS02770 SM01058 CarD-like/TRCF domain SAGV88_RS02785 SM00363 S4 RNA-binding domain SAGV88_RS02795 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS02800 SM00977 TilS substrate C-terminal domain SAGV88_RS02810 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02830 SM00905 Dihydroneopterin aldolase SAGV88_RS02915 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS02950 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02950 SM01086 C-terminal, D2-small domain, of ClpB protein SAGV88_RS02960 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS02965 SM00670 Large family of predicted nucleotide-binding domains SAGV88_RS02980 SM00840 SAGV88_RS02980 SAGV88_RS02990 SM00967 RNA 2'-O ribose methyltransferase substrate binding SAGV88_RS03010 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SAGV88_RS03010 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SAGV88_RS03015 SM00649 Ribosomal protein L11/L12 SAGV88_RS03045 SM00663 RNA polymerase I subunit A N-terminus SAGV88_RS03065 SM00838 Elongation factor G C-terminus SAGV88_RS03065 SM00889 Elongation factor G, domain IV SAGV88_RS03180 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SAGV88_RS03240 SM00986 Uracil DNA glycosylase superfamily SAGV88_RS03240 SM00987 UreE urease accessory protein, C-terminal domain SAGV88_RS03380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS03390 SM00829 Enoylreductase SAGV88_RS03405 SM00836 DALR anticodon binding domain SAGV88_RS03405 SM01016 Arginyl tRNA synthetase N terminal dom SAGV88_RS03410 SM00478 endonuclease III SAGV88_RS03525 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03530 SM00529 Helix-turn-helix diphteria tox regulatory element SAGV88_RS03530 SM00899 SAGV88_RS03530 SAGV88_RS03545 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03575 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03595 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03615 SM01120 SAGV88_RS03615 SAGV88_RS03660 SM00448 cheY-homologous receiver domain SAGV88_RS03660 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS03665 SM00387 Histidine kinase-like ATPases SAGV88_RS03670 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03690 SM00257 Lysin motif SAGV88_RS03700 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS03795 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03800 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS03805 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS03815 SM00833 Cobalamin synthesis protein cobW C-terminal domain SAGV88_RS03880 SM00420 helix_turn_helix, Deoxyribose operon repressor SAGV88_RS03880 SM01134 SAGV88_RS03880 SAGV88_RS03905 SM01091 Transporter associated domain SAGV88_RS03920 SM00387 Histidine kinase-like ATPases SAGV88_RS03920 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS03925 SM00448 cheY-homologous receiver domain SAGV88_RS03925 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS03985 SM00796 Allophanate hydrolase subunit 1 SAGV88_RS03990 SM00797 Allophanate hydrolase subunit 2 SAGV88_RS04005 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04010 SM00341 Helicase and RNase D C-terminal SAGV88_RS04010 SM00487 DEAD-like helicases superfamily SAGV88_RS04010 SM00490 helicase superfamily c-terminal domain SAGV88_RS04010 SM00956 SAGV88_RS04010 SAGV88_RS04015 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04040 SM00046 Diacylglycerol kinase catalytic domain (presumed) SAGV88_RS04100 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04155 SM00267 diguanylate cyclase SAGV88_RS04175 SM00487 DEAD-like helicases superfamily SAGV88_RS04175 SM00490 helicase superfamily c-terminal domain SAGV88_RS04190 SM00957 SecA DEAD-like domain SAGV88_RS04190 SM00958 SecA preprotein cross-linking domain SAGV88_RS04200 SM00937 SAGV88_RS04200 SAGV88_RS04210 SM00257 Lysin motif SAGV88_RS04225 SM00487 DEAD-like helicases superfamily SAGV88_RS04225 SM00490 helicase superfamily c-terminal domain SAGV88_RS04250 SM00028 Tetratricopeptide repeats SAGV88_RS04305 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SAGV88_RS04325 SM01192 SAGV88_RS04325 SAGV88_RS04325 SM01193 SAGV88_RS04325 SAGV88_RS04345 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS04345 SM00357 Cold shock protein domain SAGV88_RS04345 SM00955 SAGV88_RS04345 SAGV88_RS04415 SM00318 Staphylococcal nuclease homologues SAGV88_RS04425 SM00357 Cold shock protein domain SAGV88_RS04465 SM00855 Phosphoglycerate mutase family SAGV88_RS04525 SM00493 SAGV88_RS04525 SAGV88_RS04535 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04535 SM00930 SAGV88_RS04535 SAGV88_RS04555 SM00513 Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation SAGV88_RS04565 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS04590 SM00942 Primase C terminal 1 (PriCT-1) SAGV88_RS04665 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04730 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS04875 SM01298 SAGV88_RS04875 SAGV88_RS04885 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS04900 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SAGV88_RS04980 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS04980 SM01086 C-terminal, D2-small domain, of ClpB protein SAGV88_RS05025 SM00825 Beta-ketoacyl synthase SAGV88_RS05045 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05050 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05065 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05070 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05120 SM01118 SAGV88_RS05120 SAGV88_RS05130 SM00954 Region found in RelA / SpoT proteins SAGV88_RS05145 SM00116 Domain in cystathionine beta-synthase and other proteins. SAGV88_RS05145 SM00924 MgtE intracellular N domain SAGV88_RS05215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAGV88_RS05245 SM00914 SAGV88_RS05245 SAGV88_RS05285 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05380 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS05390 SM00047 Lysozyme subfamily 2 SAGV88_RS05390 SM00644 SAGV88_RS05390 SAGV88_RS05450 SM01001 AIR carboxylase SAGV88_RS05470 SM01211 SAGV88_RS05470 SAGV88_RS05495 SM00798 AICARFT/IMPCHase bienzyme SAGV88_RS05495 SM00851 MGS-like domain SAGV88_RS05500 SM01209 SAGV88_RS05500 SAGV88_RS05500 SM01210 SAGV88_RS05500 SAGV88_RS05510 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05580 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS05610 SM00861 Transketolase, pyrimidine binding domain SAGV88_RS05630 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS05635 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS05685 SM00838 Elongation factor G C-terminus SAGV88_RS05710 SM00878 Biotin carboxylase C-terminal domain SAGV88_RS05790 SM00857 Resolvase, N terminal domain SAGV88_RS05805 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS05810 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS05830 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS06090 SM00047 Lysozyme subfamily 2 SAGV88_RS06110 SM00287 Bacterial SH3 domain homologues SAGV88_RS06110 SM00644 SAGV88_RS06110 SAGV88_RS06115 SM00725 NEAr Transporter domain SAGV88_RS06120 SM00725 NEAr Transporter domain SAGV88_RS06125 SM00725 NEAr Transporter domain SAGV88_RS06160 SM00967 RNA 2'-O ribose methyltransferase substrate binding SAGV88_RS06170 SM00873 B3/4 domain SAGV88_RS06170 SM00874 tRNA synthetase B5 domain SAGV88_RS06170 SM00896 Ferredoxin-fold anticodon binding domain SAGV88_RS06190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAGV88_RS06190 SM00481 DNA polymerase alpha chain like domain SAGV88_RS06190 SM00483 DNA polymerase X family SAGV88_RS06210 SM00465 GIY-YIG type nucleases (URI domain) SAGV88_RS06415 SM00740 SAGV88_RS06415 SAGV88_RS06435 SM00842 Cell division protein FtsA SAGV88_RS06440 SM00864 Tubulin/FtsZ family, GTPase domain SAGV88_RS06440 SM00865 Tubulin/FtsZ family, C-terminal domain SAGV88_RS06465 SM00363 S4 RNA-binding domain SAGV88_RS06495 SM00363 S4 RNA-binding domain SAGV88_RS06520 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SAGV88_RS06525 SM00851 MGS-like domain SAGV88_RS06525 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SAGV88_RS06525 SM01209 SAGV88_RS06525 SAGV88_RS06530 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SAGV88_RS06555 SM00072 Guanylate kinase homologues. SAGV88_RS06560 SM01409 SAGV88_RS06560 SAGV88_RS06570 SM00487 DEAD-like helicases superfamily SAGV88_RS06570 SM00490 helicase superfamily c-terminal domain SAGV88_RS06605 SM00331 Sigma factor PP2C-like phosphatases SAGV88_RS06605 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SAGV88_RS06610 SM00220 Serine/Threonine protein kinases, catalytic domain SAGV88_RS06610 SM00740 SAGV88_RS06610 SAGV88_RS06625 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SAGV88_RS06640 SM01120 SAGV88_RS06640 SAGV88_RS06640 SM01121 SAGV88_RS06640 SAGV88_RS06645 SM00487 DEAD-like helicases superfamily SAGV88_RS06645 SM00490 helicase superfamily c-terminal domain SAGV88_RS06660 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SAGV88_RS06665 SM00822 SAGV88_RS06665 SAGV88_RS06680 SM00358 Double-stranded RNA binding motif SAGV88_RS06680 SM00535 Ribonuclease III family SAGV88_RS06685 SM00968 SMC proteins Flexible Hinge Domain SAGV88_RS06690 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS06690 SM00962 SRP54-type protein, GTPase domain SAGV88_RS06690 SM00963 SRP54-type protein, helical bundle domain SAGV88_RS06700 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS06700 SM00962 SRP54-type protein, GTPase domain SAGV88_RS06700 SM00963 SRP54-type protein, helical bundle domain SAGV88_RS06750 SM00881 CoA binding domain SAGV88_RS06755 SM00257 Lysin motif SAGV88_RS06770 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SAGV88_RS06770 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SAGV88_RS06770 SM00493 SAGV88_RS06770 SAGV88_RS06790 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS06790 SM01086 C-terminal, D2-small domain, of ClpB protein SAGV88_RS06850 SM00479 SAGV88_RS06850 SAGV88_RS06850 SM00481 DNA polymerase alpha chain like domain SAGV88_RS06860 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS06860 SM00322 K homology RNA-binding domain SAGV88_RS06890 SM00904 Riboflavin kinase SAGV88_RS06895 SM01387 SAGV88_RS06895 SAGV88_RS06900 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS06900 SM00322 K homology RNA-binding domain SAGV88_RS06905 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS06910 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS06910 SM00843 SAGV88_RS06910 SAGV88_RS06915 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS06915 SM00866 SAGV88_RS06915 SAGV88_RS06940 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS06950 SM00852 Probable molybdopterin binding domain SAGV88_RS06955 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS06960 SM00322 K homology RNA-binding domain SAGV88_RS06960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS06990 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS07005 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SAGV88_RS07005 SM00534 ATPase domain of DNA mismatch repair MUTS family SAGV88_RS07010 SM00853 MutL C terminal dimerisation domain SAGV88_RS07010 SM01340 SAGV88_RS07010 SAGV88_RS07065 SM00422 helix_turn_helix, mercury resistance SAGV88_RS07070 SM01230 SAGV88_RS07070 SAGV88_RS07185 SM00155 Phospholipase D. Active site motifs. SAGV88_RS07190 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS07210 SM00421 helix_turn_helix, Lux Regulon SAGV88_RS07210 SM00448 cheY-homologous receiver domain SAGV88_RS07220 SM00318 Staphylococcal nuclease homologues SAGV88_RS07275 SM01060 SAGV88_RS07275 SAGV88_RS07290 SM01240 SAGV88_RS07290 SAGV88_RS07320 SM00861 Transketolase, pyrimidine binding domain SAGV88_RS07375 SM01207 SAGV88_RS07375 SAGV88_RS07380 SM00387 Histidine kinase-like ATPases SAGV88_RS07380 SM00433 TopoisomeraseII SAGV88_RS07385 SM00434 DNA Topoisomerase IV SAGV88_RS07400 SM01061 CAT RNA binding domain SAGV88_RS07505 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS07510 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS07545 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS07575 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS07590 SM00859 Semialdehyde dehydrogenase, NAD binding domain SAGV88_RS07595 SM01130 SAGV88_RS07595 SAGV88_RS07615 SM01005 Alanine racemase, C-terminal domain SAGV88_RS07630 SM00357 Cold shock protein domain SAGV88_RS07690 SM00327 von Willebrand factor (vWF) type A domain SAGV88_RS07715 SM00861 Transketolase, pyrimidine binding domain SAGV88_RS07720 SM00387 Histidine kinase-like ATPases SAGV88_RS07720 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS07725 SM00448 cheY-homologous receiver domain SAGV88_RS07725 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS07740 SM01321 SAGV88_RS07740 SAGV88_RS07745 SM00014 Acid phosphatase homologues SAGV88_RS07760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAGV88_RS07760 SM00245 tail specific protease SAGV88_RS07810 SM00567 E-Z type HEAT repeats SAGV88_RS07810 SM00932 Scaffold protein Nfu/NifU N terminal SAGV88_RS07815 SM00932 Scaffold protein Nfu/NifU N terminal SAGV88_RS07870 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SAGV88_RS07870 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SAGV88_RS07875 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SAGV88_RS07875 SM00475 5'-3' exonuclease SAGV88_RS07900 SM00981 SAGV88_RS07900 SAGV88_RS07945 SM00478 endonuclease III SAGV88_RS07945 SM00525 SAGV88_RS07945 SAGV88_RS07960 SM00479 SAGV88_RS07960 SAGV88_RS07960 SM00491 SAGV88_RS07960 SAGV88_RS07995 SM00914 SAGV88_RS07995 SAGV88_RS08000 SM00028 Tetratricopeptide repeats SAGV88_RS08025 SM00562 SAGV88_RS08025 SAGV88_RS08050 SM00411 bacterial (prokaryotic) histone like domain SAGV88_RS08065 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS08090 SM00870 SAGV88_RS08090 SAGV88_RS08105 SM00257 Lysin motif SAGV88_RS08110 SM00487 DEAD-like helicases superfamily SAGV88_RS08110 SM00490 helicase superfamily c-terminal domain SAGV88_RS08165 SM00287 Bacterial SH3 domain homologues SAGV88_RS08165 SM00646 SAGV88_RS08165 SAGV88_RS08230 SM00635 Bacterial Ig-like domain 2 SAGV88_RS08285 SM00507 HNH nucleases SAGV88_RS08295 SM00487 DEAD-like helicases superfamily SAGV88_RS08300 SM00990 SAGV88_RS08300 SAGV88_RS08385 SM00482 DNA polymerase A domain SAGV88_RS08455 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS08495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAGV88_RS08495 SM00387 Histidine kinase-like ATPases SAGV88_RS08495 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS08500 SM00448 cheY-homologous receiver domain SAGV88_RS08500 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS08505 SM00363 S4 RNA-binding domain SAGV88_RS08570 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS08570 SM00871 Bacterial transcription activator, effector binding domain SAGV88_RS08575 SM00642 Alpha-amylase domain SAGV88_RS08580 SM00354 helix_turn _helix lactose operon repressor SAGV88_RS08595 SM01350 SAGV88_RS08595 SAGV88_RS08625 SM00861 Transketolase, pyrimidine binding domain SAGV88_RS08675 SM00878 Biotin carboxylase C-terminal domain SAGV88_RS08685 SM00841 Elongation factor P, C-terminal SAGV88_RS08685 SM01185 SAGV88_RS08685 SAGV88_RS08710 SM00450 Rhodanese Homology Domain SAGV88_RS08770 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS08825 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS08830 SM00518 AP endonuclease family 2 SAGV88_RS08835 SM00487 DEAD-like helicases superfamily SAGV88_RS08835 SM00490 helicase superfamily c-terminal domain SAGV88_RS08855 SM00400 zinc finger SAGV88_RS08855 SM00493 SAGV88_RS08855 SAGV88_RS08865 SM00116 Domain in cystathionine beta-synthase and other proteins. SAGV88_RS08925 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS08940 SM00271 DnaJ molecular chaperone homology domain SAGV88_RS08960 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS08970 SM00838 Elongation factor G C-terminus SAGV88_RS08985 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS08995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAGV88_RS09010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS09020 SM01103 SAGV88_RS09020 SAGV88_RS09075 SM00878 Biotin carboxylase C-terminal domain SAGV88_RS09085 SM00797 Allophanate hydrolase subunit 2 SAGV88_RS09090 SM00796 Allophanate hydrolase subunit 1 SAGV88_RS09125 SM00732 Likely ribonuclease with RNase H fold. SAGV88_RS09135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SAGV88_RS09140 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS09145 SM00028 Tetratricopeptide repeats SAGV88_RS09180 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS09210 SM00287 Bacterial SH3 domain homologues SAGV88_RS09210 SM00646 SAGV88_RS09210 SAGV88_RS09220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS09220 SM00954 Region found in RelA / SpoT proteins SAGV88_RS09245 SM01323 SAGV88_RS09245 SAGV88_RS09260 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS09265 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAGV88_RS09330 SM00650 Ribosomal RNA adenine dimethylases SAGV88_RS09400 SM01004 Delta-aminolevulinic acid dehydratase SAGV88_RS09430 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS09430 SM00994 ClpX C4-type zinc finger SAGV88_RS09430 SM01086 C-terminal, D2-small domain, of ClpB protein SAGV88_RS09480 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SAGV88_RS09505 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SAGV88_RS09515 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SAGV88_RS09515 SM01232 SAGV88_RS09515 SAGV88_RS09520 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SAGV88_RS09520 SM00474 3'-5' exonuclease SAGV88_RS09520 SM00475 5'-3' exonuclease SAGV88_RS09520 SM00482 DNA polymerase A domain SAGV88_RS09530 SM00387 Histidine kinase-like ATPases SAGV88_RS09530 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS09535 SM00448 cheY-homologous receiver domain SAGV88_RS09535 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS09545 SM01329 SAGV88_RS09545 SAGV88_RS09590 SM00919 Malic enzyme, NAD binding domain SAGV88_RS09590 SM01274 SAGV88_RS09590 SAGV88_RS09595 SM00481 DNA polymerase alpha chain like domain SAGV88_RS09605 SM00116 Domain in cystathionine beta-synthase and other proteins. SAGV88_RS09615 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS09630 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SAGV88_RS09630 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SAGV88_RS09660 SM00981 SAGV88_RS09660 SAGV88_RS09680 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SAGV88_RS09685 SM00363 S4 RNA-binding domain SAGV88_RS09685 SM01390 SAGV88_RS09685 SAGV88_RS09730 SM00563 Phosphate acyltransferases SAGV88_RS09735 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAGV88_RS09740 SM00363 S4 RNA-binding domain SAGV88_RS09755 SM00725 NEAr Transporter domain SAGV88_RS09795 SM00830 Chorismate mutase type II SAGV88_RS09820 SM00843 SAGV88_RS09820 SAGV88_RS09850 SM00849 Metallo-beta-lactamase superfamily SAGV88_RS09880 SM00363 S4 RNA-binding domain SAGV88_RS09900 SM00450 Rhodanese Homology Domain SAGV88_RS09925 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS09980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SAGV88_RS09990 SM00226 Low molecular weight phosphatase family SAGV88_RS09995 SM00047 Lysozyme subfamily 2 SAGV88_RS10045 SM01321 SAGV88_RS10045 SAGV88_RS10100 SM01234 SAGV88_RS10100 SAGV88_RS10120 SM00894 Excalibur calcium-binding domain SAGV88_RS10265 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS10280 SM01260 SAGV88_RS10280 SAGV88_RS10400 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS10425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS10455 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS10460 SM00421 helix_turn_helix, Lux Regulon SAGV88_RS10460 SM00448 cheY-homologous receiver domain SAGV88_RS10510 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS10515 SM00062 Bacterial periplasmic substrate-binding proteins SAGV88_RS10700 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS10710 SM00478 endonuclease III SAGV88_RS10785 SM00226 Low molecular weight phosphatase family SAGV88_RS10800 SM00421 helix_turn_helix, Lux Regulon SAGV88_RS10800 SM00448 cheY-homologous receiver domain SAGV88_RS10805 SM00387 Histidine kinase-like ATPases SAGV88_RS10860 SM00479 SAGV88_RS10860 SAGV88_RS10880 SM00046 Diacylglycerol kinase catalytic domain (presumed) SAGV88_RS10890 SM00845 GatB domain SAGV88_RS10915 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAGV88_RS10915 SM00292 breast cancer carboxy-terminal domain SAGV88_RS10915 SM00532 Ligase N family SAGV88_RS10935 SM00998 Adenylosuccinate lyase C-terminus SAGV88_RS10990 SM00710 Parallel beta-helix repeats SAGV88_RS11000 SM01131 SAGV88_RS11000 SAGV88_RS11060 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS11070 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS11075 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS11140 SM00287 Bacterial SH3 domain homologues SAGV88_RS11255 SM00507 HNH nucleases SAGV88_RS11425 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS11515 SM00883 Chaperonin 10 Kd subunit SAGV88_RS11545 SM00793 Accessory gene regulator B SAGV88_RS11550 SM00794 Staphylococcal AgrD protein SAGV88_RS11560 SM00448 cheY-homologous receiver domain SAGV88_RS11560 SM00850 LytTr DNA-binding domain SAGV88_RS11575 SM00640 Glycosyl hydrolases family 32 SAGV88_RS11580 SM00354 helix_turn _helix lactose operon repressor SAGV88_RS11600 SM00881 CoA binding domain SAGV88_RS11605 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS11615 SM00534 ATPase domain of DNA mismatch repair MUTS family SAGV88_RS11670 SM01329 SAGV88_RS11670 SAGV88_RS11745 SM00731 SprT homologues. SAGV88_RS11750 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS11750 SM00732 Likely ribonuclease with RNase H fold. SAGV88_RS11770 SM00331 Sigma factor PP2C-like phosphatases SAGV88_RS11770 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SAGV88_RS11790 SM01005 Alanine racemase, C-terminal domain SAGV88_RS11835 SM00387 Histidine kinase-like ATPases SAGV88_RS11835 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS11840 SM00448 cheY-homologous receiver domain SAGV88_RS11840 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS11845 SM00487 DEAD-like helicases superfamily SAGV88_RS11845 SM00490 helicase superfamily c-terminal domain SAGV88_RS11880 SM00155 Phospholipase D. Active site motifs. SAGV88_RS11885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAGV88_RS11965 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12025 SM00226 Low molecular weight phosphatase family SAGV88_RS12040 SM00937 SAGV88_RS12040 SAGV88_RS12055 SM00357 Cold shock protein domain SAGV88_RS12055 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12055 SM00959 Rho termination factor, N-terminal domain SAGV88_RS12135 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SAGV88_RS12145 SM01133 SAGV88_RS12145 SAGV88_RS12185 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SAGV88_RS12225 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12465 SM00829 Enoylreductase SAGV88_RS12470 SM00829 Enoylreductase SAGV88_RS12495 SM01133 SAGV88_RS12495 SAGV88_RS12515 SM00420 helix_turn_helix, Deoxyribose operon repressor SAGV88_RS12515 SM01134 SAGV88_RS12515 SAGV88_RS12545 SM00422 helix_turn_helix, mercury resistance SAGV88_RS12600 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12655 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12660 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS12670 SM00662 RNA polymerases D SAGV88_RS12690 SM00316 Ribosomal protein S1-like RNA-binding domain SAGV88_RS12745 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SAGV88_RS12750 SM01374 SAGV88_RS12750 SAGV88_RS12770 SM00322 K homology RNA-binding domain SAGV88_RS12785 SM01382 SAGV88_RS12785 SAGV88_RS12785 SM01383 SAGV88_RS12785 SAGV88_RS12805 SM01403 SAGV88_RS12805 SAGV88_RS12820 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SAGV88_RS12820 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SAGV88_RS12820 SM00493 SAGV88_RS12820 SAGV88_RS12880 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS12910 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS12935 SM00852 Probable molybdopterin binding domain SAGV88_RS12945 SM00852 Probable molybdopterin binding domain SAGV88_RS12955 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13020 SM00988 UreE urease accessory protein, N-terminal domain SAGV88_RS13060 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS13110 SM00047 Lysozyme subfamily 2 SAGV88_RS13125 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SAGV88_RS13125 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SAGV88_RS13140 SM00420 helix_turn_helix, Deoxyribose operon repressor SAGV88_RS13300 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13385 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS13400 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13410 SM00448 cheY-homologous receiver domain SAGV88_RS13410 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS13415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAGV88_RS13415 SM00387 Histidine kinase-like ATPases SAGV88_RS13415 SM00388 His Kinase A (phosphoacceptor) domain SAGV88_RS13420 SM00850 LytTr DNA-binding domain SAGV88_RS13455 SM00829 Enoylreductase SAGV88_RS13510 SM00342 helix_turn_helix, arabinose operon control protein SAGV88_RS13535 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS13555 SM00422 helix_turn_helix, mercury resistance SAGV88_RS13560 SM00421 helix_turn_helix, Lux Regulon SAGV88_RS13560 SM00448 cheY-homologous receiver domain SAGV88_RS13565 SM00387 Histidine kinase-like ATPases SAGV88_RS13590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SAGV88_RS13670 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13680 SM00062 Bacterial periplasmic substrate-binding proteins SAGV88_RS13680 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SAGV88_RS13700 SM00855 Phosphoglycerate mutase family SAGV88_RS13765 SM00729 Elongator protein 3, MiaB family, Radical SAM SAGV88_RS13765 SM00876 Biotin and Thiamin Synthesis associated domain SAGV88_RS13790 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13795 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13830 SM00871 Bacterial transcription activator, effector binding domain SAGV88_RS13910 SM00116 Domain in cystathionine beta-synthase and other proteins. SAGV88_RS13910 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13950 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS13995 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14000 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14105 SM00487 DEAD-like helicases superfamily SAGV88_RS14105 SM00490 helicase superfamily c-terminal domain SAGV88_RS14140 SM01208 SAGV88_RS14140 SAGV88_RS14195 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAGV88_RS14195 SM00895 SAGV88_RS14195 SAGV88_RS14200 SM00422 helix_turn_helix, mercury resistance SAGV88_RS14205 SM00954 Region found in RelA / SpoT proteins SAGV88_RS14240 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS14245 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14280 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS14310 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14445 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14445 SM01086 C-terminal, D2-small domain, of ClpB protein SAGV88_RS14460 SM00899 SAGV88_RS14460 SAGV88_RS14485 SM01266 SAGV88_RS14485 SAGV88_RS14645 SM00857 Resolvase, N terminal domain SAGV88_RS14785 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SAGV88_RS14965 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS14970 SM00387 Histidine kinase-like ATPases SAGV88_RS14975 SM00448 cheY-homologous receiver domain SAGV88_RS14975 SM00862 Transcriptional regulatory protein, C terminal SAGV88_RS14990 SM00098 Alkaline phosphatase homologues SAGV88_RS14995 SM00347 helix_turn_helix multiple antibiotic resistance protein SAGV88_RS15080 SM00047 Lysozyme subfamily 2 SAGV88_RS15105 SM00957 SecA DEAD-like domain SAGV88_RS15105 SM00958 SecA preprotein cross-linking domain SAGV88_RS15135 SM00903 Flavin reductase like domain SAGV88_RS15160 SM00903 Flavin reductase like domain SAGV88_RS15285 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS15300 SM00867 YceI-like domain SAGV88_RS15310 SM00450 Rhodanese Homology Domain SAGV88_RS15360 SM00382 ATPases associated with a variety of cellular activities SAGV88_RS15395 SM00357 Cold shock protein domain SAGV88_RS15400 SM00530 Helix-turn-helix XRE-family like proteins SAGV88_RS15415 SM00470 ParB-like nuclease domain SAGV88_RS15425 SM01228 SAGV88_RS15425