M013TW_RS00005	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
M013TW_RS00010	SM00480	DNA polymerase III beta subunit
M013TW_RS00015	SM01321	M013TW_RS00015
M013TW_RS00030	SM00387	Histidine kinase-like ATPases
M013TW_RS00030	SM00433	TopoisomeraseII
M013TW_RS00035	SM00434	DNA Topoisomerase IV
M013TW_RS00075	SM00267	diguanylate cyclase
M013TW_RS00090	SM00788	Adenylosuccinate synthetase
M013TW_RS00105	SM00448	cheY-homologous receiver domain
M013TW_RS00105	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS00110	SM00091	PAS domain
M013TW_RS00110	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
M013TW_RS00110	SM00387	Histidine kinase-like ATPases
M013TW_RS00110	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS00125	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS00170	SM00857	Resolvase, N terminal domain
M013TW_RS00265	SM00857	Resolvase, N terminal domain
M013TW_RS00290	SM00487	DEAD-like helicases superfamily
M013TW_RS00350	SM00344	helix_turn_helix ASNC type
M013TW_RS00395	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00415	SM00148	Phospholipase C, catalytic domain (part); domain X
M013TW_RS00425	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS00470	SM01321	M013TW_RS00470
M013TW_RS00475	SM00257	Lysin motif
M013TW_RS00480	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS00540	SM00470	ParB-like nuclease domain
M013TW_RS00560	SM00822	M013TW_RS00560
M013TW_RS00605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS00625	SM01133	M013TW_RS00625
M013TW_RS00645	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00650	SM00062	Bacterial periplasmic substrate-binding proteins
M013TW_RS00670	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS00750	SM00984	UDP binding domain
M013TW_RS00790	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00840	SM00859	Semialdehyde dehydrogenase, NAD binding domain
M013TW_RS00895	SM00487	DEAD-like helicases superfamily
M013TW_RS00905	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00945	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS00990	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS00990	SM00448	cheY-homologous receiver domain
M013TW_RS01060	SM00882	Coenzyme A transferase
M013TW_RS01140	SM00829	Enoylreductase
M013TW_RS01150	SM00829	Enoylreductase
M013TW_RS01200	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
M013TW_RS01200	SM00387	Histidine kinase-like ATPases
M013TW_RS01205	SM00448	cheY-homologous receiver domain
M013TW_RS01205	SM00850	LytTr DNA-binding domain
M013TW_RS01220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS01220	SM00866	M013TW_RS01220
M013TW_RS01260	SM00354	helix_turn _helix lactose operon repressor
M013TW_RS01290	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS01455	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS01485	SM01130	M013TW_RS01485
M013TW_RS01540	SM00506	Appr-1"-p processing enzyme
M013TW_RS01575	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS01655	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS01665	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS01715	SM00470	ParB-like nuclease domain
M013TW_RS01740	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS01805	SM00855	Phosphoglycerate mutase family
M013TW_RS01875	SM00116	Domain in cystathionine beta-synthase and other proteins.
M013TW_RS01875	SM01240	M013TW_RS01875
M013TW_RS01955	SM01321	M013TW_RS01955
M013TW_RS02050	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02105	SM00833	Cobalamin synthesis protein cobW C-terminal domain
M013TW_RS02140	SM00014	Acid phosphatase homologues
M013TW_RS02165	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02165	SM00930	M013TW_RS02165
M013TW_RS02180	SM00257	Lysin motif
M013TW_RS02235	SM00642	Alpha-amylase domain
M013TW_RS02240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS02240	SM00866	M013TW_RS02240
M013TW_RS02250	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02260	SM00278	Helix-hairpin-helix DNA-binding motif class 1
M013TW_RS02260	SM00493	M013TW_RS02260
M013TW_RS02330	SM00465	GIY-YIG type nucleases (URI domain)
M013TW_RS02360	SM00650	Ribosomal RNA adenine dimethylases
M013TW_RS02390	SM01321	M013TW_RS02390
M013TW_RS02405	SM01400	M013TW_RS02405
M013TW_RS02420	SM00487	DEAD-like helicases superfamily
M013TW_RS02420	SM00490	helicase superfamily c-terminal domain
M013TW_RS02420	SM00982	M013TW_RS02420
M013TW_RS02420	SM01058	CarD-like/TRCF domain
M013TW_RS02435	SM00363	S4 RNA-binding domain
M013TW_RS02445	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS02450	SM00977	TilS substrate C-terminal domain
M013TW_RS02460	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02480	SM00905	Dihydroneopterin aldolase
M013TW_RS02560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS02595	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02595	SM01086	C-terminal, D2-small domain, of ClpB protein
M013TW_RS02605	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS02610	SM00670	Large family of predicted nucleotide-binding domains
M013TW_RS02625	SM00840	M013TW_RS02625
M013TW_RS02635	SM00967	RNA 2'-O ribose methyltransferase substrate binding
M013TW_RS02655	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
M013TW_RS02655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
M013TW_RS02660	SM00649	Ribosomal protein L11/L12
M013TW_RS02690	SM00663	RNA polymerase I subunit A N-terminus
M013TW_RS02710	SM00838	Elongation factor G C-terminus
M013TW_RS02710	SM00889	Elongation factor G, domain IV
M013TW_RS02830	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
M013TW_RS02880	SM00986	Uracil DNA glycosylase superfamily
M013TW_RS02880	SM00987	UreE urease accessory protein, C-terminal domain 
M013TW_RS02910	SM01321	M013TW_RS02910
M013TW_RS03015	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS03025	SM00829	Enoylreductase
M013TW_RS03040	SM00836	DALR anticodon binding domain
M013TW_RS03040	SM01016	Arginyl tRNA synthetase N terminal dom
M013TW_RS03045	SM00478	endonuclease III
M013TW_RS03160	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03165	SM00529	Helix-turn-helix diphteria tox regulatory element
M013TW_RS03165	SM00899	M013TW_RS03165
M013TW_RS03180	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03210	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03230	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03250	SM01120	M013TW_RS03250
M013TW_RS03295	SM00448	cheY-homologous receiver domain
M013TW_RS03295	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS03300	SM00387	Histidine kinase-like ATPases
M013TW_RS03305	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03325	SM00257	Lysin motif
M013TW_RS03335	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS03425	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03430	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03435	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS03440	SM00833	Cobalamin synthesis protein cobW C-terminal domain
M013TW_RS03495	SM00420	helix_turn_helix, Deoxyribose operon repressor
M013TW_RS03495	SM01134	M013TW_RS03495
M013TW_RS03520	SM01091	Transporter associated domain
M013TW_RS03535	SM00387	Histidine kinase-like ATPases
M013TW_RS03535	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS03540	SM00448	cheY-homologous receiver domain
M013TW_RS03540	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS03595	SM00796	Allophanate hydrolase subunit 1
M013TW_RS03600	SM00797	Allophanate hydrolase subunit 2
M013TW_RS03615	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03620	SM00341	Helicase and RNase D C-terminal
M013TW_RS03620	SM00487	DEAD-like helicases superfamily
M013TW_RS03620	SM00490	helicase superfamily c-terminal domain
M013TW_RS03620	SM00956	M013TW_RS03620
M013TW_RS03625	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03645	SM00046	Diacylglycerol kinase catalytic domain (presumed)
M013TW_RS03700	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS03755	SM00267	diguanylate cyclase
M013TW_RS03775	SM00487	DEAD-like helicases superfamily
M013TW_RS03775	SM00490	helicase superfamily c-terminal domain
M013TW_RS03790	SM00957	SecA DEAD-like domain
M013TW_RS03790	SM00958	SecA preprotein cross-linking domain
M013TW_RS03800	SM00937	M013TW_RS03800
M013TW_RS03810	SM00257	Lysin motif
M013TW_RS03825	SM00487	DEAD-like helicases superfamily
M013TW_RS03825	SM00490	helicase superfamily c-terminal domain
M013TW_RS03850	SM00028	Tetratricopeptide repeats
M013TW_RS03885	SM00919	Malic enzyme, NAD binding domain
M013TW_RS03885	SM01274	M013TW_RS03885
M013TW_RS03910	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
M013TW_RS03930	SM01192	M013TW_RS03930
M013TW_RS03930	SM01193	M013TW_RS03930
M013TW_RS03950	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS03950	SM00357	Cold shock protein domain
M013TW_RS03950	SM00955	M013TW_RS03950
M013TW_RS04005	SM00318	Staphylococcal nuclease homologues
M013TW_RS04010	SM00357	Cold shock protein domain
M013TW_RS04050	SM00855	Phosphoglycerate mutase family
M013TW_RS04110	SM00493	M013TW_RS04110
M013TW_RS04120	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04120	SM00930	M013TW_RS04120
M013TW_RS04160	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS04165	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS04190	SM00942	Primase C terminal 1 (PriCT-1)
M013TW_RS04280	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04345	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS04490	SM01298	M013TW_RS04490
M013TW_RS04500	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS04515	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
M013TW_RS04595	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04595	SM01086	C-terminal, D2-small domain, of ClpB protein
M013TW_RS04645	SM00825	Beta-ketoacyl synthase
M013TW_RS04665	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04670	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04685	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04690	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS04745	SM01118	M013TW_RS04745
M013TW_RS04755	SM00954	Region found in RelA / SpoT proteins
M013TW_RS04770	SM00116	Domain in cystathionine beta-synthase and other proteins.
M013TW_RS04770	SM00924	MgtE intracellular N domain
M013TW_RS04850	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
M013TW_RS04880	SM00914	M013TW_RS04880
M013TW_RS04930	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS05015	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS05025	SM00047	Lysozyme subfamily 2
M013TW_RS05025	SM00644	M013TW_RS05025
M013TW_RS05085	SM01001	AIR carboxylase
M013TW_RS05105	SM01211	M013TW_RS05105
M013TW_RS05130	SM00798	AICARFT/IMPCHase bienzyme
M013TW_RS05130	SM00851	MGS-like domain
M013TW_RS05135	SM01209	M013TW_RS05135
M013TW_RS05135	SM01210	M013TW_RS05135
M013TW_RS05210	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS05240	SM00861	Transketolase, pyrimidine binding domain
M013TW_RS05260	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS05265	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS05315	SM00838	Elongation factor G C-terminus
M013TW_RS05340	SM00878	Biotin carboxylase C-terminal domain
M013TW_RS05420	SM00725	NEAr Transporter domain
M013TW_RS05425	SM00725	NEAr Transporter domain
M013TW_RS05430	SM00725	NEAr Transporter domain
M013TW_RS05465	SM00967	RNA 2'-O ribose methyltransferase substrate binding
M013TW_RS05475	SM00873	B3/4 domain
M013TW_RS05475	SM00874	tRNA synthetase B5 domain
M013TW_RS05475	SM00896	Ferredoxin-fold anticodon binding domain
M013TW_RS05495	SM00278	Helix-hairpin-helix DNA-binding motif class 1
M013TW_RS05495	SM00481	DNA polymerase alpha chain like domain
M013TW_RS05495	SM00483	DNA polymerase X family
M013TW_RS05500	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
M013TW_RS05500	SM00534	ATPase domain of DNA mismatch repair MUTS family
M013TW_RS05505	SM00463	Small MutS-related domain
M013TW_RS05520	SM00465	GIY-YIG type nucleases (URI domain)
M013TW_RS05725	SM00740	M013TW_RS05725
M013TW_RS05745	SM00842	Cell division protein FtsA
M013TW_RS05750	SM00864	Tubulin/FtsZ family, GTPase domain
M013TW_RS05750	SM00865	Tubulin/FtsZ family, C-terminal domain
M013TW_RS05775	SM00363	S4 RNA-binding domain
M013TW_RS05810	SM00363	S4 RNA-binding domain
M013TW_RS05835	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
M013TW_RS05840	SM00851	MGS-like domain
M013TW_RS05840	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
M013TW_RS05840	SM01209	M013TW_RS05840
M013TW_RS05845	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
M013TW_RS05870	SM00072	Guanylate kinase homologues.
M013TW_RS05875	SM01409	M013TW_RS05875
M013TW_RS05885	SM00487	DEAD-like helicases superfamily
M013TW_RS05885	SM00490	helicase superfamily c-terminal domain
M013TW_RS05920	SM00331	Sigma factor PP2C-like phosphatases
M013TW_RS05920	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
M013TW_RS05925	SM00220	Serine/Threonine protein kinases, catalytic domain
M013TW_RS05925	SM00740	M013TW_RS05925
M013TW_RS05940	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
M013TW_RS05955	SM01120	M013TW_RS05955
M013TW_RS05955	SM01121	M013TW_RS05955
M013TW_RS05960	SM00487	DEAD-like helicases superfamily
M013TW_RS05960	SM00490	helicase superfamily c-terminal domain
M013TW_RS05975	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
M013TW_RS05980	SM00822	M013TW_RS05980
M013TW_RS05995	SM00358	Double-stranded RNA binding motif
M013TW_RS05995	SM00535	Ribonuclease III family
M013TW_RS06000	SM00968	SMC proteins Flexible Hinge Domain
M013TW_RS06005	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06005	SM00962	SRP54-type protein, GTPase domain
M013TW_RS06005	SM00963	SRP54-type protein, helical bundle domain
M013TW_RS06015	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06015	SM00962	SRP54-type protein, GTPase domain
M013TW_RS06015	SM00963	SRP54-type protein, helical bundle domain
M013TW_RS06065	SM00881	CoA binding domain
M013TW_RS06105	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06105	SM01086	C-terminal, D2-small domain, of ClpB protein
M013TW_RS06165	SM00479	M013TW_RS06165
M013TW_RS06165	SM00481	DNA polymerase alpha chain like domain
M013TW_RS06175	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS06175	SM00322	K homology RNA-binding domain
M013TW_RS06205	SM00904	Riboflavin kinase
M013TW_RS06210	SM01387	M013TW_RS06210
M013TW_RS06215	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS06215	SM00322	K homology RNA-binding domain
M013TW_RS06220	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS06225	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06225	SM00843	M013TW_RS06225
M013TW_RS06230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS06230	SM00866	M013TW_RS06230
M013TW_RS06255	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS06270	SM00852	Probable molybdopterin binding domain
M013TW_RS06275	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06280	SM00322	K homology RNA-binding domain
M013TW_RS06280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS06310	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS06325	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
M013TW_RS06325	SM00534	ATPase domain of DNA mismatch repair MUTS family
M013TW_RS06330	SM00853	MutL C terminal dimerisation domain
M013TW_RS06330	SM01340	M013TW_RS06330
M013TW_RS06385	SM00422	helix_turn_helix, mercury resistance
M013TW_RS06390	SM01230	M013TW_RS06390
M013TW_RS06505	SM00155	Phospholipase D. Active site motifs.
M013TW_RS06515	SM00318	Staphylococcal nuclease homologues
M013TW_RS06570	SM01060	M013TW_RS06570
M013TW_RS06585	SM01240	M013TW_RS06585
M013TW_RS06615	SM00861	Transketolase, pyrimidine binding domain
M013TW_RS06670	SM01207	M013TW_RS06670
M013TW_RS06675	SM00387	Histidine kinase-like ATPases
M013TW_RS06675	SM00433	TopoisomeraseII
M013TW_RS06680	SM00434	DNA Topoisomerase IV
M013TW_RS06695	SM01061	CAT RNA binding domain
M013TW_RS06800	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06805	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06840	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06865	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS06875	SM00859	Semialdehyde dehydrogenase, NAD binding domain
M013TW_RS06880	SM01130	M013TW_RS06880
M013TW_RS06900	SM01005	Alanine racemase, C-terminal domain
M013TW_RS06920	SM00357	Cold shock protein domain
M013TW_RS06955	SM00327	von Willebrand factor (vWF) type A domain
M013TW_RS06980	SM00861	Transketolase, pyrimidine binding domain
M013TW_RS06990	SM00448	cheY-homologous receiver domain
M013TW_RS06990	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS06995	SM00014	Acid phosphatase homologues
M013TW_RS07010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
M013TW_RS07010	SM00245	tail specific protease
M013TW_RS07060	SM00567	E-Z type HEAT repeats
M013TW_RS07060	SM00932	Scaffold protein Nfu/NifU N terminal
M013TW_RS07065	SM00932	Scaffold protein Nfu/NifU N terminal
M013TW_RS07110	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
M013TW_RS07110	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
M013TW_RS07115	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
M013TW_RS07115	SM00475	5'-3' exonuclease
M013TW_RS07135	SM00981	M013TW_RS07135
M013TW_RS07175	SM00478	endonuclease III
M013TW_RS07175	SM00525	M013TW_RS07175
M013TW_RS07190	SM00479	M013TW_RS07190
M013TW_RS07190	SM00491	M013TW_RS07190
M013TW_RS07225	SM00914	M013TW_RS07225
M013TW_RS07230	SM00028	Tetratricopeptide repeats
M013TW_RS07255	SM00562	M013TW_RS07255
M013TW_RS07280	SM00411	bacterial (prokaryotic) histone like domain
M013TW_RS07295	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS07320	SM00870	M013TW_RS07320
M013TW_RS07335	SM00257	Lysin motif
M013TW_RS07340	SM00487	DEAD-like helicases superfamily
M013TW_RS07340	SM00490	helicase superfamily c-terminal domain
M013TW_RS07390	SM00287	Bacterial SH3 domain homologues
M013TW_RS07390	SM00646	M013TW_RS07390
M013TW_RS07495	SM00507	HNH nucleases
M013TW_RS07680	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS07685	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS07730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
M013TW_RS07730	SM00387	Histidine kinase-like ATPases
M013TW_RS07730	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS07735	SM00448	cheY-homologous receiver domain
M013TW_RS07735	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS07740	SM00363	S4 RNA-binding domain
M013TW_RS07805	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS07805	SM00871	Bacterial transcription activator, effector binding domain
M013TW_RS07815	SM00354	helix_turn _helix lactose operon repressor
M013TW_RS07830	SM01350	M013TW_RS07830
M013TW_RS07860	SM00861	Transketolase, pyrimidine binding domain
M013TW_RS07910	SM00878	Biotin carboxylase C-terminal domain
M013TW_RS07920	SM00841	Elongation factor P, C-terminal
M013TW_RS07920	SM01185	M013TW_RS07920
M013TW_RS07945	SM00450	Rhodanese Homology Domain
M013TW_RS08005	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS08060	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS08065	SM00518	AP endonuclease family 2
M013TW_RS08070	SM00487	DEAD-like helicases superfamily
M013TW_RS08070	SM00490	helicase superfamily c-terminal domain
M013TW_RS08090	SM00400	zinc finger
M013TW_RS08090	SM00493	M013TW_RS08090
M013TW_RS08100	SM00116	Domain in cystathionine beta-synthase and other proteins.
M013TW_RS08160	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS08175	SM00271	DnaJ molecular chaperone homology domain
M013TW_RS08195	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS08200	SM00838	Elongation factor G C-terminus
M013TW_RS08215	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS08225	SM00278	Helix-hairpin-helix DNA-binding motif class 1
M013TW_RS08240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS08250	SM01103	M013TW_RS08250
M013TW_RS08285	SM01321	M013TW_RS08285
M013TW_RS08310	SM00878	Biotin carboxylase C-terminal domain
M013TW_RS08330	SM00797	Allophanate hydrolase subunit 2
M013TW_RS08335	SM00796	Allophanate hydrolase subunit 1
M013TW_RS08380	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
M013TW_RS08385	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS08390	SM00028	Tetratricopeptide repeats
M013TW_RS08425	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS08450	SM00287	Bacterial SH3 domain homologues
M013TW_RS08450	SM00646	M013TW_RS08450
M013TW_RS08460	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS08460	SM00954	Region found in RelA / SpoT proteins
M013TW_RS08480	SM01323	M013TW_RS08480
M013TW_RS08495	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS08500	SM00278	Helix-hairpin-helix DNA-binding motif class 1
M013TW_RS08600	SM01004	Delta-aminolevulinic acid dehydratase
M013TW_RS08630	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS08630	SM00994	ClpX C4-type zinc finger
M013TW_RS08630	SM01086	C-terminal, D2-small domain, of ClpB protein
M013TW_RS08680	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
M013TW_RS08705	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
M013TW_RS08715	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
M013TW_RS08715	SM01232	M013TW_RS08715
M013TW_RS08720	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
M013TW_RS08720	SM00474	3'-5' exonuclease
M013TW_RS08720	SM00475	5'-3' exonuclease
M013TW_RS08720	SM00482	DNA polymerase A domain
M013TW_RS08730	SM00387	Histidine kinase-like ATPases
M013TW_RS08730	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS08735	SM00448	cheY-homologous receiver domain
M013TW_RS08735	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS08745	SM01329	M013TW_RS08745
M013TW_RS08780	SM00919	Malic enzyme, NAD binding domain
M013TW_RS08780	SM01274	M013TW_RS08780
M013TW_RS08785	SM00481	DNA polymerase alpha chain like domain
M013TW_RS08795	SM00116	Domain in cystathionine beta-synthase and other proteins.
M013TW_RS08805	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS08820	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
M013TW_RS08820	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
M013TW_RS08850	SM00981	M013TW_RS08850
M013TW_RS08865	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
M013TW_RS08870	SM00363	S4 RNA-binding domain
M013TW_RS08870	SM01390	M013TW_RS08870
M013TW_RS08925	SM00563	Phosphate acyltransferases
M013TW_RS08930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
M013TW_RS08935	SM00363	S4 RNA-binding domain
M013TW_RS08950	SM00725	NEAr Transporter domain
M013TW_RS08980	SM00354	helix_turn _helix lactose operon repressor
M013TW_RS08990	SM00830	Chorismate mutase type II
M013TW_RS09045	SM00849	Metallo-beta-lactamase superfamily
M013TW_RS09075	SM00363	S4 RNA-binding domain
M013TW_RS09095	SM00450	Rhodanese Homology Domain
M013TW_RS09110	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS09120	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS09165	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
M013TW_RS09175	SM00226	Low molecular weight phosphatase family
M013TW_RS09180	SM00047	Lysozyme subfamily 2
M013TW_RS09265	SM01234	M013TW_RS09265
M013TW_RS09285	SM00894	Excalibur calcium-binding domain
M013TW_RS09360	SM00287	Bacterial SH3 domain homologues
M013TW_RS09365	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS09470	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS09495	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS09525	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS09530	SM00421	helix_turn_helix, Lux Regulon
M013TW_RS09530	SM00448	cheY-homologous receiver domain
M013TW_RS09585	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS09590	SM00062	Bacterial periplasmic substrate-binding proteins
M013TW_RS09785	SM00478	endonuclease III
M013TW_RS09855	SM00226	Low molecular weight phosphatase family
M013TW_RS09870	SM00421	helix_turn_helix, Lux Regulon
M013TW_RS09870	SM00448	cheY-homologous receiver domain
M013TW_RS09875	SM00387	Histidine kinase-like ATPases
M013TW_RS09930	SM00479	M013TW_RS09930
M013TW_RS09950	SM00046	Diacylglycerol kinase catalytic domain (presumed)
M013TW_RS09965	SM00845	GatB domain
M013TW_RS09990	SM00278	Helix-hairpin-helix DNA-binding motif class 1
M013TW_RS09990	SM00292	breast cancer carboxy-terminal domain
M013TW_RS09990	SM00532	Ligase N family
M013TW_RS10010	SM00998	Adenylosuccinate lyase C-terminus
M013TW_RS10065	SM00710	Parallel beta-helix repeats
M013TW_RS10075	SM01131	M013TW_RS10075
M013TW_RS10135	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10145	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS10215	SM00883	Chaperonin 10 Kd subunit
M013TW_RS10245	SM00793	Accessory gene regulator B
M013TW_RS10250	SM00794	Staphylococcal AgrD protein
M013TW_RS10260	SM00448	cheY-homologous receiver domain
M013TW_RS10260	SM00850	LytTr DNA-binding domain
M013TW_RS10275	SM00640	Glycosyl hydrolases family 32
M013TW_RS10280	SM00354	helix_turn _helix lactose operon repressor
M013TW_RS10300	SM00881	CoA binding domain
M013TW_RS10305	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10320	SM00534	ATPase domain of DNA mismatch repair MUTS family
M013TW_RS10370	SM00917	LeuA allosteric (dimerisation) domain
M013TW_RS10375	SM01329	M013TW_RS10375
M013TW_RS10425	SM00731	SprT homologues.
M013TW_RS10430	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS10430	SM00732	Likely ribonuclease with RNase H fold.
M013TW_RS10450	SM00331	Sigma factor PP2C-like phosphatases
M013TW_RS10450	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
M013TW_RS10470	SM01005	Alanine racemase, C-terminal domain
M013TW_RS10515	SM00387	Histidine kinase-like ATPases
M013TW_RS10515	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS10520	SM00448	cheY-homologous receiver domain
M013TW_RS10520	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS10525	SM00487	DEAD-like helicases superfamily
M013TW_RS10525	SM00490	helicase superfamily c-terminal domain
M013TW_RS10560	SM00155	Phospholipase D. Active site motifs.
M013TW_RS10565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
M013TW_RS10615	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10660	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10720	SM00226	Low molecular weight phosphatase family
M013TW_RS10735	SM00937	M013TW_RS10735
M013TW_RS10750	SM00357	Cold shock protein domain
M013TW_RS10750	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS10750	SM00959	Rho termination factor, N-terminal domain
M013TW_RS10840	SM01133	M013TW_RS10840
M013TW_RS10880	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
M013TW_RS10925	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS11135	SM00829	Enoylreductase
M013TW_RS11140	SM00829	Enoylreductase
M013TW_RS11165	SM01133	M013TW_RS11165
M013TW_RS11185	SM00420	helix_turn_helix, Deoxyribose operon repressor
M013TW_RS11185	SM01134	M013TW_RS11185
M013TW_RS11210	SM00422	helix_turn_helix, mercury resistance
M013TW_RS11280	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS11285	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS11295	SM00662	RNA polymerases D
M013TW_RS11315	SM00316	Ribosomal protein S1-like RNA-binding domain
M013TW_RS11370	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
M013TW_RS11375	SM01374	M013TW_RS11375
M013TW_RS11395	SM00322	K homology RNA-binding domain
M013TW_RS11410	SM01382	M013TW_RS11410
M013TW_RS11410	SM01383	M013TW_RS11410
M013TW_RS11430	SM01403	M013TW_RS11430
M013TW_RS11445	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
M013TW_RS11445	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
M013TW_RS11445	SM00493	M013TW_RS11445
M013TW_RS11505	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS11525	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS11550	SM00852	Probable molybdopterin binding domain
M013TW_RS11560	SM00852	Probable molybdopterin binding domain
M013TW_RS11570	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS11635	SM00988	UreE urease accessory protein, N-terminal domain
M013TW_RS11675	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS11725	SM00047	Lysozyme subfamily 2
M013TW_RS11740	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
M013TW_RS11740	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
M013TW_RS11755	SM00420	helix_turn_helix, Deoxyribose operon repressor
M013TW_RS11900	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS11990	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS12000	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12010	SM00448	cheY-homologous receiver domain
M013TW_RS12010	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS12015	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
M013TW_RS12015	SM00387	Histidine kinase-like ATPases
M013TW_RS12015	SM00388	His Kinase A (phosphoacceptor) domain
M013TW_RS12020	SM00850	LytTr DNA-binding domain
M013TW_RS12035	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12070	SM00829	Enoylreductase
M013TW_RS12125	SM00342	helix_turn_helix, arabinose operon control protein
M013TW_RS12150	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS12170	SM00422	helix_turn_helix, mercury resistance
M013TW_RS12175	SM00421	helix_turn_helix, Lux Regulon
M013TW_RS12175	SM00448	cheY-homologous receiver domain
M013TW_RS12180	SM00387	Histidine kinase-like ATPases
M013TW_RS12205	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
M013TW_RS12285	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12295	SM00062	Bacterial periplasmic substrate-binding proteins
M013TW_RS12295	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
M013TW_RS12310	SM00855	Phosphoglycerate mutase family
M013TW_RS12365	SM00729	Elongator protein 3, MiaB family, Radical SAM
M013TW_RS12365	SM00876	Biotin and Thiamin Synthesis associated domain
M013TW_RS12390	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12395	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12425	SM00871	Bacterial transcription activator, effector binding domain
M013TW_RS12505	SM00116	Domain in cystathionine beta-synthase and other proteins.
M013TW_RS12505	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12545	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12575	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12580	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
M013TW_RS12820	SM00895	M013TW_RS12820
M013TW_RS12825	SM00422	helix_turn_helix, mercury resistance
M013TW_RS12830	SM00954	Region found in RelA / SpoT proteins
M013TW_RS12860	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS12920	SM00347	helix_turn_helix multiple antibiotic resistance protein
M013TW_RS12930	SM01321	M013TW_RS12930
M013TW_RS12955	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS13080	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS13080	SM01086	C-terminal, D2-small domain, of ClpB protein
M013TW_RS13095	SM00899	M013TW_RS13095
M013TW_RS13120	SM01266	M013TW_RS13120
M013TW_RS13325	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
M013TW_RS13520	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS13525	SM00387	Histidine kinase-like ATPases
M013TW_RS13530	SM00448	cheY-homologous receiver domain
M013TW_RS13530	SM00862	Transcriptional regulatory protein, C terminal
M013TW_RS13545	SM00098	Alkaline phosphatase homologues
M013TW_RS13635	SM00047	Lysozyme subfamily 2
M013TW_RS13660	SM00957	SecA DEAD-like domain
M013TW_RS13660	SM00958	SecA preprotein cross-linking domain
M013TW_RS13690	SM00903	Flavin reductase like domain
M013TW_RS13720	SM00903	Flavin reductase like domain
M013TW_RS13860	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS13875	SM00867	YceI-like domain 
M013TW_RS13885	SM00450	Rhodanese Homology Domain
M013TW_RS13940	SM00382	ATPases associated with a variety of cellular activities
M013TW_RS13970	SM00357	Cold shock protein domain
M013TW_RS13975	SM00530	Helix-turn-helix XRE-family like proteins 
M013TW_RS13990	SM00470	ParB-like nuclease domain
M013TW_RS14000	SM01228	M013TW_RS14000
