SAOUHSC_00001 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00001 SM00760 Bacterial dnaA protein helix-turn-helix domain SAOUHSC_00002 SM00480 DNA polymerase III beta subunit SAOUHSC_00005 SM00387 Histidine kinase-like ATPases SAOUHSC_00005 SM00433 TopoisomeraseII SAOUHSC_00006 SM00434 DNA Topoisomerase IV SAOUHSC_00015 SM00267 diguanylate cyclase SAOUHSC_00019 SM00788 Adenylosuccinate synthetase SAOUHSC_00020 SM00448 cheY-homologous receiver domain SAOUHSC_00020 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_00021 SM00091 PAS domain SAOUHSC_00021 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAOUHSC_00021 SM00387 Histidine kinase-like ATPases SAOUHSC_00021 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_00024 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_00035 SM00450 Rhodanese Homology Domain SAOUHSC_00036 SM00450 Rhodanese Homology Domain SAOUHSC_00036 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_00051 SM00148 Phospholipase C, catalytic domain (part); domain X SAOUHSC_00056 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_00064 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_00069 SM00257 Lysin motif SAOUHSC_00070 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_00083 SM00470 ParB-like nuclease domain SAOUHSC_00086 SM00822 SAOUHSC_00086 SAOUHSC_00096 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_00100 SM01133 SAOUHSC_00100 SAOUHSC_00104 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00105 SM00062 Bacterial periplasmic substrate-binding proteins SAOUHSC_00128 SM00984 UDP binding domain SAOUHSC_00136 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00149 SM00859 Semialdehyde dehydrogenase, NAD binding domain SAOUHSC_00162 SM00487 DEAD-like helicases superfamily SAOUHSC_00167 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00175 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00184 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_00184 SM00448 cheY-homologous receiver domain SAOUHSC_00199 SM00882 Coenzyme A transferase SAOUHSC_00217 SM00829 Enoylreductase SAOUHSC_00219 SM00829 Enoylreductase SAOUHSC_00230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SAOUHSC_00230 SM00387 Histidine kinase-like ATPases SAOUHSC_00231 SM00448 cheY-homologous receiver domain SAOUHSC_00231 SM00850 LytTr DNA-binding domain SAOUHSC_00234 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_00234 SM00866 SAOUHSC_00234 SAOUHSC_00242 SM00354 helix_turn _helix lactose operon repressor SAOUHSC_00249 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00287 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00295 SM01130 SAOUHSC_00295 SAOUHSC_00306 SM00506 Appr-1"-p processing enzyme SAOUHSC_00314 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_00331 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_00333 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00342 SM00470 ParB-like nuclease domain SAOUHSC_00359 SM00855 Phosphoglycerate mutase family SAOUHSC_00374 SM00116 Domain in cystathionine beta-synthase and other proteins. SAOUHSC_00374 SM01240 SAOUHSC_00374 SAOUHSC_00410 SM00833 Cobalamin synthesis protein cobW C-terminal domain SAOUHSC_00416 SM00014 Acid phosphatase homologues SAOUHSC_00423 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00423 SM00930 SAOUHSC_00423 SAOUHSC_00427 SM00257 Lysin motif SAOUHSC_00438 SM00642 Alpha-amylase domain SAOUHSC_00439 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_00439 SM00866 SAOUHSC_00439 SAOUHSC_00442 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00445 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAOUHSC_00445 SM00493 SAOUHSC_00445 SAOUHSC_00458 SM00465 GIY-YIG type nucleases (URI domain) SAOUHSC_00463 SM00493 SAOUHSC_00463 SAOUHSC_00464 SM00650 Ribosomal RNA adenine dimethylases SAOUHSC_00472 SM01400 SAOUHSC_00472 SAOUHSC_00477 SM00487 DEAD-like helicases superfamily SAOUHSC_00477 SM00490 helicase superfamily c-terminal domain SAOUHSC_00477 SM00982 SAOUHSC_00477 SAOUHSC_00477 SM01058 CarD-like/TRCF domain SAOUHSC_00481 SM00363 S4 RNA-binding domain SAOUHSC_00483 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_00484 SM00977 TilS substrate C-terminal domain SAOUHSC_00486 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00490 SM00905 Dihydroneopterin aldolase SAOUHSC_00497 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_00505 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00505 SM01086 C-terminal, D2-small domain, of ClpB protein SAOUHSC_00507 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00508 SM00670 Large family of predicted nucleotide-binding domains SAOUHSC_00511 SM00840 SAOUHSC_00511 SAOUHSC_00512 SM00535 Ribonuclease III family SAOUHSC_00513 SM00967 RNA 2'-O ribose methyltransferase substrate binding SAOUHSC_00517 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SAOUHSC_00517 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SAOUHSC_00518 SM00649 Ribosomal protein L11/L12 SAOUHSC_00525 SM00663 RNA polymerase I subunit A N-terminus SAOUHSC_00529 SM00838 Elongation factor G C-terminus SAOUHSC_00529 SM00889 Elongation factor G, domain IV SAOUHSC_00553 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SAOUHSC_00564 SM00986 Uracil DNA glycosylase superfamily SAOUHSC_00564 SM00987 UreE urease accessory protein, C-terminal domain SAOUHSC_00606 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_00608 SM00829 Enoylreductase SAOUHSC_00611 SM00836 DALR anticodon binding domain SAOUHSC_00611 SM01016 Arginyl tRNA synthetase N terminal dom SAOUHSC_00612 SM00478 endonuclease III SAOUHSC_00637 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00638 SM00529 Helix-turn-helix diphteria tox regulatory element SAOUHSC_00638 SM00899 SAOUHSC_00638 SAOUHSC_00641 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00647 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00652 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00656 SM01120 SAOUHSC_00656 SAOUHSC_00665 SM00448 cheY-homologous receiver domain SAOUHSC_00665 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_00666 SM00387 Histidine kinase-like ATPases SAOUHSC_00667 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00671 SM00257 Lysin motif SAOUHSC_00673 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_00692 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00693 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00694 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_00695 SM00833 Cobalamin synthesis protein cobW C-terminal domain SAOUHSC_00706 SM00420 helix_turn_helix, Deoxyribose operon repressor SAOUHSC_00706 SM01134 SAOUHSC_00706 SAOUHSC_00711 SM01091 Transporter associated domain SAOUHSC_00714 SM00387 Histidine kinase-like ATPases SAOUHSC_00714 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_00715 SM00448 cheY-homologous receiver domain SAOUHSC_00715 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_00726 SM00796 Allophanate hydrolase subunit 1 SAOUHSC_00727 SM00797 Allophanate hydrolase subunit 2 SAOUHSC_00729 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00730 SM00341 Helicase and RNase D C-terminal SAOUHSC_00730 SM00487 DEAD-like helicases superfamily SAOUHSC_00730 SM00490 helicase superfamily c-terminal domain SAOUHSC_00730 SM00956 SAOUHSC_00730 SAOUHSC_00731 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00736 SM00046 Diacylglycerol kinase catalytic domain (presumed) SAOUHSC_00748 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00760 SM00267 diguanylate cyclase SAOUHSC_00765 SM00487 DEAD-like helicases superfamily SAOUHSC_00765 SM00490 helicase superfamily c-terminal domain SAOUHSC_00769 SM00957 SecA DEAD-like domain SAOUHSC_00769 SM00958 SecA preprotein cross-linking domain SAOUHSC_00771 SM00937 SAOUHSC_00771 SAOUHSC_00773 SM00257 Lysin motif SAOUHSC_00776 SM00487 DEAD-like helicases superfamily SAOUHSC_00779 SM00490 helicase superfamily c-terminal domain SAOUHSC_00784 SM00028 Tetratricopeptide repeats SAOUHSC_00795 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SAOUHSC_00799 SM01192 SAOUHSC_00799 SAOUHSC_00799 SM01193 SAOUHSC_00799 SAOUHSC_00803 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_00803 SM00357 Cold shock protein domain SAOUHSC_00803 SM00955 SAOUHSC_00803 SAOUHSC_00818 SM00318 Staphylococcal nuclease homologues SAOUHSC_00819 SM00357 Cold shock protein domain SAOUHSC_00827 SM00855 Phosphoglycerate mutase family SAOUHSC_00840 SM00493 SAOUHSC_00840 SAOUHSC_00842 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00842 SM00930 SAOUHSC_00842 SAOUHSC_00847 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00861 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_00890 SM01298 SAOUHSC_00890 SAOUHSC_00892 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_00895 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SAOUHSC_00912 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00912 SM01086 C-terminal, D2-small domain, of ClpB protein SAOUHSC_00921 SM00825 Beta-ketoacyl synthase SAOUHSC_00925 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00926 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00929 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00930 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00940 SM01118 SAOUHSC_00940 SAOUHSC_00942 SM00954 Region found in RelA / SpoT proteins SAOUHSC_00945 SM00116 Domain in cystathionine beta-synthase and other proteins. SAOUHSC_00945 SM00924 MgtE intracellular N domain SAOUHSC_00958 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAOUHSC_00962 SM00914 SAOUHSC_00962 SAOUHSC_00970 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_00992 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_00994 SM00047 Lysozyme subfamily 2 SAOUHSC_00994 SM00644 SAOUHSC_00994 SAOUHSC_01008 SM01001 AIR carboxylase SAOUHSC_01012 SM01211 SAOUHSC_01012 SAOUHSC_01017 SM00798 AICARFT/IMPCHase bienzyme SAOUHSC_01017 SM00851 MGS-like domain SAOUHSC_01018 SM01209 SAOUHSC_01018 SAOUHSC_01018 SM01210 SAOUHSC_01018 SAOUHSC_01021 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01035 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01041 SM00861 Transketolase, pyrimidine binding domain SAOUHSC_01045 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_01046 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01058 SM00838 Elongation factor G C-terminus SAOUHSC_01064 SM00878 Biotin carboxylase C-terminal domain SAOUHSC_01079 SM00725 NEAr Transporter domain SAOUHSC_01081 SM00725 NEAr Transporter domain SAOUHSC_01082 SM00725 NEAr Transporter domain SAOUHSC_01091 SM00967 RNA 2'-O ribose methyltransferase substrate binding SAOUHSC_01093 SM00873 B3/4 domain SAOUHSC_01093 SM00874 tRNA synthetase B5 domain SAOUHSC_01093 SM00896 Ferredoxin-fold anticodon binding domain SAOUHSC_01098 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAOUHSC_01098 SM00481 DNA polymerase alpha chain like domain SAOUHSC_01098 SM00483 DNA polymerase X family SAOUHSC_01099 SM00463 Small MutS-related domain SAOUHSC_01099 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SAOUHSC_01099 SM00534 ATPase domain of DNA mismatch repair MUTS family SAOUHSC_01102 SM00465 GIY-YIG type nucleases (URI domain) SAOUHSC_01145 SM00740 SAOUHSC_01145 SAOUHSC_01149 SM00842 Cell division protein FtsA SAOUHSC_01150 SM00864 Tubulin/FtsZ family, GTPase domain SAOUHSC_01150 SM00865 Tubulin/FtsZ family, C-terminal domain SAOUHSC_01156 SM00363 S4 RNA-binding domain SAOUHSC_01163 SM00363 S4 RNA-binding domain SAOUHSC_01169 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SAOUHSC_01170 SM00851 MGS-like domain SAOUHSC_01170 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SAOUHSC_01170 SM01209 SAOUHSC_01170 SAOUHSC_01171 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SAOUHSC_01176 SM00072 Guanylate kinase homologues. SAOUHSC_01177 SM01409 SAOUHSC_01177 SAOUHSC_01179 SM00487 DEAD-like helicases superfamily SAOUHSC_01179 SM00490 helicase superfamily c-terminal domain SAOUHSC_01186 SM00331 Sigma factor PP2C-like phosphatases SAOUHSC_01186 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SAOUHSC_01187 SM00220 Serine/Threonine protein kinases, catalytic domain SAOUHSC_01187 SM00740 SAOUHSC_01187 SAOUHSC_01190 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SAOUHSC_01193 SM01120 SAOUHSC_01193 SAOUHSC_01193 SM01121 SAOUHSC_01193 SAOUHSC_01194 SM00487 DEAD-like helicases superfamily SAOUHSC_01194 SM00490 helicase superfamily c-terminal domain SAOUHSC_01198 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SAOUHSC_01199 SM00822 SAOUHSC_01199 SAOUHSC_01203 SM00358 Double-stranded RNA binding motif SAOUHSC_01203 SM00535 Ribonuclease III family SAOUHSC_01204 SM00968 SMC proteins Flexible Hinge Domain SAOUHSC_01205 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01205 SM00962 SRP54-type protein, GTPase domain SAOUHSC_01205 SM00963 SRP54-type protein, helical bundle domain SAOUHSC_01207 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01207 SM00962 SRP54-type protein, GTPase domain SAOUHSC_01207 SM00963 SRP54-type protein, helical bundle domain SAOUHSC_01218 SM00881 CoA binding domain SAOUHSC_01219 SM00257 Lysin motif SAOUHSC_01222 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SAOUHSC_01222 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SAOUHSC_01222 SM00493 SAOUHSC_01222 SAOUHSC_01226 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01226 SM01086 C-terminal, D2-small domain, of ClpB protein SAOUHSC_01241 SM00479 SAOUHSC_01241 SAOUHSC_01241 SM00481 DNA polymerase alpha chain like domain SAOUHSC_01243 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_01243 SM00322 K homology RNA-binding domain SAOUHSC_01249 SM00904 Riboflavin kinase SAOUHSC_01250 SM01387 SAOUHSC_01250 SAOUHSC_01251 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_01251 SM00322 K homology RNA-binding domain SAOUHSC_01252 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01253 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01253 SM00843 SAOUHSC_01253 SAOUHSC_01254 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_01254 SM00866 SAOUHSC_01254 SAOUHSC_01259 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_01261 SM00852 Probable molybdopterin binding domain SAOUHSC_01262 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01263 SM00322 K homology RNA-binding domain SAOUHSC_01263 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_01269 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_01272 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SAOUHSC_01272 SM00534 ATPase domain of DNA mismatch repair MUTS family SAOUHSC_01273 SM00853 MutL C terminal dimerisation domain SAOUHSC_01273 SM01340 SAOUHSC_01273 SAOUHSC_01285 SM00422 helix_turn_helix, mercury resistance SAOUHSC_01287 SM01230 SAOUHSC_01287 SAOUHSC_01310 SM00155 Phospholipase D. Active site motifs. SAOUHSC_01311 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01314 SM00421 helix_turn_helix, Lux Regulon SAOUHSC_01314 SM00448 cheY-homologous receiver domain SAOUHSC_01316 SM00318 Staphylococcal nuclease homologues SAOUHSC_01327 SM01060 SAOUHSC_01327 SAOUHSC_01330 SM01240 SAOUHSC_01330 SAOUHSC_01337 SM00861 Transketolase, pyrimidine binding domain SAOUHSC_01350 SM01207 SAOUHSC_01350 SAOUHSC_01351 SM00387 Histidine kinase-like ATPases SAOUHSC_01351 SM00433 TopoisomeraseII SAOUHSC_01352 SM00434 DNA Topoisomerase IV SAOUHSC_01356 SM01061 CAT RNA binding domain SAOUHSC_01377 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01378 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01385 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01392 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01395 SM00859 Semialdehyde dehydrogenase, NAD binding domain SAOUHSC_01396 SM01130 SAOUHSC_01396 SAOUHSC_01400 SM01005 Alanine racemase, C-terminal domain SAOUHSC_01403 SM00357 Cold shock protein domain SAOUHSC_01412 SM00327 von Willebrand factor (vWF) type A domain SAOUHSC_01418 SM00861 Transketolase, pyrimidine binding domain SAOUHSC_01419 SM00387 Histidine kinase-like ATPases SAOUHSC_01419 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_01420 SM00448 cheY-homologous receiver domain SAOUHSC_01420 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_01423 SM00014 Acid phosphatase homologues SAOUHSC_01427 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAOUHSC_01427 SM00245 tail specific protease SAOUHSC_01437 SM00567 E-Z type HEAT repeats SAOUHSC_01437 SM00932 Scaffold protein Nfu/NifU N terminal SAOUHSC_01438 SM00932 Scaffold protein Nfu/NifU N terminal SAOUHSC_01447 SM00844 GA module SAOUHSC_01452 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SAOUHSC_01452 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SAOUHSC_01454 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SAOUHSC_01454 SM00475 5'-3' exonuclease SAOUHSC_01460 SM00981 SAOUHSC_01460 SAOUHSC_01469 SM00478 endonuclease III SAOUHSC_01469 SM00525 SAOUHSC_01469 SAOUHSC_01472 SM00479 SAOUHSC_01472 SAOUHSC_01472 SM00491 SAOUHSC_01472 SAOUHSC_01479 SM00914 SAOUHSC_01479 SAOUHSC_01480 SM00028 Tetratricopeptide repeats SAOUHSC_01485 SM00562 SAOUHSC_01485 SAOUHSC_01490 SM00411 bacterial (prokaryotic) histone like domain SAOUHSC_01493 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_01497 SM00870 SAOUHSC_01497 SAOUHSC_01501 SM00257 Lysin motif SAOUHSC_01502 SM00487 DEAD-like helicases superfamily SAOUHSC_01502 SM00490 helicase superfamily c-terminal domain SAOUHSC_01515 SM00287 Bacterial SH3 domain homologues SAOUHSC_01515 SM00646 SAOUHSC_01515 SAOUHSC_01528 SM00635 Bacterial Ig-like domain 2 SAOUHSC_01540 SM00507 HNH nucleases SAOUHSC_01542 SM00487 DEAD-like helicases superfamily SAOUHSC_01543 SM00990 SAOUHSC_01543 SAOUHSC_01563 SM00482 DNA polymerase A domain SAOUHSC_01574 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_01575 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_01576 SM00479 SAOUHSC_01576 SAOUHSC_01585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAOUHSC_01585 SM00387 Histidine kinase-like ATPases SAOUHSC_01585 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_01586 SM00448 cheY-homologous receiver domain SAOUHSC_01586 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_01587 SM00363 S4 RNA-binding domain SAOUHSC_01600 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_01600 SM00871 Bacterial transcription activator, effector binding domain SAOUHSC_01601 SM00642 Alpha-amylase domain SAOUHSC_01602 SM00354 helix_turn _helix lactose operon repressor SAOUHSC_01605 SM01350 SAOUHSC_01605 SAOUHSC_01612 SM00861 Transketolase, pyrimidine binding domain SAOUHSC_01623 SM00878 Biotin carboxylase C-terminal domain SAOUHSC_01625 SM00841 Elongation factor P, C-terminal SAOUHSC_01625 SM01185 SAOUHSC_01625 SAOUHSC_01630 SM00450 Rhodanese Homology Domain SAOUHSC_01644 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01657 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01658 SM00518 AP endonuclease family 2 SAOUHSC_01659 SM00487 DEAD-like helicases superfamily SAOUHSC_01659 SM00490 helicase superfamily c-terminal domain SAOUHSC_01663 SM00400 zinc finger SAOUHSC_01663 SM00493 SAOUHSC_01663 SAOUHSC_01665 SM00116 Domain in cystathionine beta-synthase and other proteins. SAOUHSC_01679 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_01682 SM00271 DnaJ molecular chaperone homology domain SAOUHSC_01686 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_01688 SM00838 Elongation factor G C-terminus SAOUHSC_01691 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01693 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAOUHSC_01696 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_01698 SM01103 SAOUHSC_01698 SAOUHSC_01709 SM00878 Biotin carboxylase C-terminal domain SAOUHSC_01711 SM00797 Allophanate hydrolase subunit 2 SAOUHSC_01712 SM00796 Allophanate hydrolase subunit 1 SAOUHSC_01720 SM00732 Likely ribonuclease with RNase H fold. SAOUHSC_01722 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SAOUHSC_01723 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01724 SM00028 Tetratricopeptide repeats SAOUHSC_01734 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01739 SM00287 Bacterial SH3 domain homologues SAOUHSC_01739 SM00646 SAOUHSC_01739 SAOUHSC_01742 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_01742 SM00954 Region found in RelA / SpoT proteins SAOUHSC_01747 SM01323 SAOUHSC_01747 SAOUHSC_01750 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01751 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAOUHSC_01772 SM01004 Delta-aminolevulinic acid dehydratase SAOUHSC_01778 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01778 SM00994 ClpX C4-type zinc finger SAOUHSC_01778 SM01086 C-terminal, D2-small domain, of ClpB protein SAOUHSC_01788 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SAOUHSC_01794 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SAOUHSC_01796 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SAOUHSC_01796 SM01232 SAOUHSC_01796 SAOUHSC_01797 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SAOUHSC_01797 SM00474 3'-5' exonuclease SAOUHSC_01797 SM00475 5'-3' exonuclease SAOUHSC_01797 SM00482 DNA polymerase A domain SAOUHSC_01799 SM00387 Histidine kinase-like ATPases SAOUHSC_01799 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_01800 SM00448 cheY-homologous receiver domain SAOUHSC_01800 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_01801 SM01329 SAOUHSC_01801 SAOUHSC_01810 SM00919 Malic enzyme, NAD binding domain SAOUHSC_01810 SM01274 SAOUHSC_01810 SAOUHSC_01811 SM00481 DNA polymerase alpha chain like domain SAOUHSC_01813 SM00116 Domain in cystathionine beta-synthase and other proteins. SAOUHSC_01815 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01818 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SAOUHSC_01818 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SAOUHSC_01824 SM00981 SAOUHSC_01824 SAOUHSC_01828 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SAOUHSC_01829 SM00363 S4 RNA-binding domain SAOUHSC_01829 SM01390 SAOUHSC_01829 SAOUHSC_01837 SM00563 Phosphate acyltransferases SAOUHSC_01838 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SAOUHSC_01839 SM00363 S4 RNA-binding domain SAOUHSC_01843 SM00725 NEAr Transporter domain SAOUHSC_01850 SM00354 helix_turn _helix lactose operon repressor SAOUHSC_01852 SM00830 Chorismate mutase type II SAOUHSC_01857 SM00843 SAOUHSC_01857 SAOUHSC_01864 SM00849 Metallo-beta-lactamase superfamily SAOUHSC_01870 SM00363 S4 RNA-binding domain SAOUHSC_01874 SM00450 Rhodanese Homology Domain SAOUHSC_01877 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_01879 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_01891 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SAOUHSC_01894 SM00226 Low molecular weight phosphatase family SAOUHSC_01895 SM00047 Lysozyme subfamily 2 SAOUHSC_01911 SM01321 SAOUHSC_01911 SAOUHSC_01914 SM01234 SAOUHSC_01914 SAOUHSC_01918 SM00894 Excalibur calcium-binding domain SAOUHSC_01948 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01951 SM01260 SAOUHSC_01951 SAOUHSC_01967 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01973 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_01979 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_01980 SM00421 helix_turn_helix, Lux Regulon SAOUHSC_01980 SM00448 cheY-homologous receiver domain SAOUHSC_01990 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_01991 SM00062 Bacterial periplasmic substrate-binding proteins SAOUHSC_02003 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02005 SM00478 endonuclease III SAOUHSC_02019 SM00287 Bacterial SH3 domain homologues SAOUHSC_02019 SM00644 SAOUHSC_02019 SAOUHSC_02023 SM00047 Lysozyme subfamily 2 SAOUHSC_02062 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_02080 SM01040 BRO family, N-terminal domain SAOUHSC_02083 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_02084 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_02095 SM00226 Low molecular weight phosphatase family SAOUHSC_02098 SM00421 helix_turn_helix, Lux Regulon SAOUHSC_02098 SM00448 cheY-homologous receiver domain SAOUHSC_02099 SM00387 Histidine kinase-like ATPases SAOUHSC_02110 SM00479 SAOUHSC_02110 SAOUHSC_02114 SM00046 Diacylglycerol kinase catalytic domain (presumed) SAOUHSC_02116 SM00845 GatB domain SAOUHSC_02122 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SAOUHSC_02122 SM00292 breast cancer carboxy-terminal domain SAOUHSC_02122 SM00532 Ligase N family SAOUHSC_02126 SM00998 Adenylosuccinate lyase C-terminus SAOUHSC_02138 SM00710 Parallel beta-helix repeats SAOUHSC_02140 SM01131 SAOUHSC_02140 SAOUHSC_02152 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02154 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02155 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_02170 SM00287 Bacterial SH3 domain homologues SAOUHSC_02185 SM00635 Bacterial Ig-like domain 2 SAOUHSC_02198 SM00507 HNH nucleases SAOUHSC_02235 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_02255 SM00883 Chaperonin 10 Kd subunit SAOUHSC_02261 SM00793 Accessory gene regulator B SAOUHSC_02262 SM00794 Staphylococcal AgrD protein SAOUHSC_02265 SM00850 LytTr DNA-binding domain SAOUHSC_02268 SM00640 Glycosyl hydrolases family 32 SAOUHSC_02269 SM00354 helix_turn _helix lactose operon repressor SAOUHSC_02273 SM00881 CoA binding domain SAOUHSC_02274 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02276 SM00534 ATPase domain of DNA mismatch repair MUTS family SAOUHSC_02285 SM00917 LeuA allosteric (dimerisation) domain SAOUHSC_02286 SM01329 SAOUHSC_02286 SAOUHSC_02296 SM00731 SprT homologues. SAOUHSC_02297 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_02297 SM00732 Likely ribonuclease with RNase H fold. SAOUHSC_02305 SM01005 Alanine racemase, C-terminal domain SAOUHSC_02314 SM00387 Histidine kinase-like ATPases SAOUHSC_02314 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_02315 SM00448 cheY-homologous receiver domain SAOUHSC_02315 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_02316 SM00487 DEAD-like helicases superfamily SAOUHSC_02316 SM00490 helicase superfamily c-terminal domain SAOUHSC_02323 SM00155 Phospholipase D. Active site motifs. SAOUHSC_02324 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SAOUHSC_02341 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02356 SM00226 Low molecular weight phosphatase family SAOUHSC_02359 SM00937 SAOUHSC_02359 SAOUHSC_02362 SM00357 Cold shock protein domain SAOUHSC_02362 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02362 SM00959 Rho termination factor, N-terminal domain SAOUHSC_02377 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SAOUHSC_02379 SM01133 SAOUHSC_02379 SAOUHSC_02388 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SAOUHSC_02397 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02445 SM00829 Enoylreductase SAOUHSC_02447 SM00829 Enoylreductase SAOUHSC_02452 SM01133 SAOUHSC_02452 SAOUHSC_02456 SM00420 helix_turn_helix, Deoxyribose operon repressor SAOUHSC_02456 SM01134 SAOUHSC_02456 SAOUHSC_02461 SM00422 helix_turn_helix, mercury resistance SAOUHSC_02472 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02482 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02483 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02485 SM00662 RNA polymerases D SAOUHSC_02489 SM00316 Ribosomal protein S1-like RNA-binding domain SAOUHSC_02501 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SAOUHSC_02502 SM01374 SAOUHSC_02502 SAOUHSC_02506 SM00322 K homology RNA-binding domain SAOUHSC_02509 SM01382 SAOUHSC_02509 SAOUHSC_02509 SM01383 SAOUHSC_02509 SAOUHSC_02512a SM01403 SAOUHSC_02512a SAOUHSC_02517 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SAOUHSC_02517 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SAOUHSC_02517 SM00493 SAOUHSC_02517 SAOUHSC_02530 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_02536 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_02542 SM00852 Probable molybdopterin binding domain SAOUHSC_02544 SM00852 Probable molybdopterin binding domain SAOUHSC_02546 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02562 SM00988 UreE urease accessory protein, N-terminal domain SAOUHSC_02570 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_02580 SM00047 Lysozyme subfamily 2 SAOUHSC_02582 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SAOUHSC_02582 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SAOUHSC_02585 SM00420 helix_turn_helix, Deoxyribose operon repressor SAOUHSC_02619 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02640 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02643 SM00448 cheY-homologous receiver domain SAOUHSC_02643 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_02644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SAOUHSC_02644 SM00387 Histidine kinase-like ATPases SAOUHSC_02644 SM00388 His Kinase A (phosphoacceptor) domain SAOUHSC_02645 SM00850 LytTr DNA-binding domain SAOUHSC_02652 SM00829 Enoylreductase SAOUHSC_02664 SM00342 helix_turn_helix, arabinose operon control protein SAOUHSC_02669 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_02674 SM00422 helix_turn_helix, mercury resistance SAOUHSC_02675 SM00421 helix_turn_helix, Lux Regulon SAOUHSC_02675 SM00448 cheY-homologous receiver domain SAOUHSC_02676 SM00387 Histidine kinase-like ATPases SAOUHSC_02681 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SAOUHSC_02697 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02699 SM00062 Bacterial periplasmic substrate-binding proteins SAOUHSC_02699 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SAOUHSC_02703 SM00855 Phosphoglycerate mutase family SAOUHSC_02714 SM00729 Elongator protein 3, MiaB family, Radical SAM SAOUHSC_02714 SM00876 Biotin and Thiamin Synthesis associated domain SAOUHSC_02718 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02719 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02726 SM00871 Bacterial transcription activator, effector binding domain SAOUHSC_02744 SM00116 Domain in cystathionine beta-synthase and other proteins. SAOUHSC_02744 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02754 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02763 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02764 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02790 SM00487 DEAD-like helicases superfamily SAOUHSC_02790 SM00490 helicase superfamily c-terminal domain SAOUHSC_02798 SM01208 SAOUHSC_02798 SAOUHSC_02809 SM00345 helix_turn_helix gluconate operon transcriptional repressor SAOUHSC_02809 SM00895 SAOUHSC_02809 SAOUHSC_02810 SM00422 helix_turn_helix, mercury resistance SAOUHSC_02811 SM00954 Region found in RelA / SpoT proteins SAOUHSC_02819 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_02820 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02826 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_02832 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02862 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02862 SM01086 C-terminal, D2-small domain, of ClpB protein SAOUHSC_02865 SM00899 SAOUHSC_02865 SAOUHSC_02871 SM01266 SAOUHSC_02871 SAOUHSC_02915 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SAOUHSC_02954 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_02955 SM00387 Histidine kinase-like ATPases SAOUHSC_02956 SM00448 cheY-homologous receiver domain SAOUHSC_02956 SM00862 Transcriptional regulatory protein, C terminal SAOUHSC_02958 SM00098 Alkaline phosphatase homologues SAOUHSC_02961 SM00347 helix_turn_helix multiple antibiotic resistance protein SAOUHSC_02979 SM00047 Lysozyme subfamily 2 SAOUHSC_02985 SM00957 SecA DEAD-like domain SAOUHSC_02985 SM00958 SecA preprotein cross-linking domain SAOUHSC_02991 SM00903 Flavin reductase like domain SAOUHSC_02995 SM00903 Flavin reductase like domain SAOUHSC_03019 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_03022 SM00867 YceI-like domain SAOUHSC_03024 SM00450 Rhodanese Homology Domain SAOUHSC_03036 SM00382 ATPases associated with a variety of cellular activities SAOUHSC_03045 SM00357 Cold shock protein domain SAOUHSC_03046 SM00530 Helix-turn-helix XRE-family like proteins SAOUHSC_03049 SM00470 ParB-like nuclease domain SAOUHSC_03052 SM01228 SAOUHSC_03052