SA40_RS00005 SM00382 ATPases associated with a variety of cellular activities SA40_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SA40_RS00010 SM00480 DNA polymerase III beta subunit SA40_RS00015 SM01321 SA40_RS00015 SA40_RS00030 SM00387 Histidine kinase-like ATPases SA40_RS00030 SM00433 TopoisomeraseII SA40_RS00035 SM00434 DNA Topoisomerase IV SA40_RS00075 SM00267 diguanylate cyclase SA40_RS00090 SM00788 Adenylosuccinate synthetase SA40_RS00105 SM00448 cheY-homologous receiver domain SA40_RS00105 SM00862 Transcriptional regulatory protein, C terminal SA40_RS00110 SM00091 PAS domain SA40_RS00110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SA40_RS00110 SM00387 Histidine kinase-like ATPases SA40_RS00110 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS00125 SM00849 Metallo-beta-lactamase superfamily SA40_RS00205 SM00857 Resolvase, N terminal domain SA40_RS00210 SM00857 Resolvase, N terminal domain SA40_RS00270 SM00344 helix_turn_helix ASNC type SA40_RS00315 SM00382 ATPases associated with a variety of cellular activities SA40_RS00335 SM00148 Phospholipase C, catalytic domain (part); domain X SA40_RS00345 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS00375 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS00390 SM01321 SA40_RS00390 SA40_RS00395 SM00257 Lysin motif SA40_RS00400 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS00460 SM00470 ParB-like nuclease domain SA40_RS00480 SM00822 SA40_RS00480 SA40_RS00525 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS00545 SM01133 SA40_RS00545 SA40_RS00565 SM00382 ATPases associated with a variety of cellular activities SA40_RS00570 SM00062 Bacterial periplasmic substrate-binding proteins SA40_RS00590 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS00670 SM00984 UDP binding domain SA40_RS00710 SM00382 ATPases associated with a variety of cellular activities SA40_RS00760 SM00859 Semialdehyde dehydrogenase, NAD binding domain SA40_RS00815 SM00487 DEAD-like helicases superfamily SA40_RS00825 SM00382 ATPases associated with a variety of cellular activities SA40_RS00865 SM00382 ATPases associated with a variety of cellular activities SA40_RS00910 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS00910 SM00448 cheY-homologous receiver domain SA40_RS00980 SM00882 Coenzyme A transferase SA40_RS01060 SM00829 Enoylreductase SA40_RS01070 SM00829 Enoylreductase SA40_RS01120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SA40_RS01120 SM00387 Histidine kinase-like ATPases SA40_RS01125 SM00448 cheY-homologous receiver domain SA40_RS01125 SM00850 LytTr DNA-binding domain SA40_RS01140 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS01140 SM00866 SA40_RS01140 SA40_RS01180 SM00354 helix_turn _helix lactose operon repressor SA40_RS01210 SM00382 ATPases associated with a variety of cellular activities SA40_RS01375 SM00382 ATPases associated with a variety of cellular activities SA40_RS01405 SM01130 SA40_RS01405 SA40_RS01460 SM00506 Appr-1"-p processing enzyme SA40_RS01495 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS01570 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS01580 SM00382 ATPases associated with a variety of cellular activities SA40_RS01630 SM00470 ParB-like nuclease domain SA40_RS01655 SM00382 ATPases associated with a variety of cellular activities SA40_RS01720 SM00855 Phosphoglycerate mutase family SA40_RS01790 SM00116 Domain in cystathionine beta-synthase and other proteins. SA40_RS01790 SM01240 SA40_RS01790 SA40_RS01870 SM01321 SA40_RS01870 SA40_RS01965 SM00382 ATPases associated with a variety of cellular activities SA40_RS02020 SM00833 Cobalamin synthesis protein cobW C-terminal domain SA40_RS02050 SM00014 Acid phosphatase homologues SA40_RS02075 SM00382 ATPases associated with a variety of cellular activities SA40_RS02075 SM00930 SA40_RS02075 SA40_RS02090 SM00257 Lysin motif SA40_RS02145 SM00642 Alpha-amylase domain SA40_RS02150 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS02150 SM00866 SA40_RS02150 SA40_RS02160 SM00382 ATPases associated with a variety of cellular activities SA40_RS02170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SA40_RS02170 SM00493 SA40_RS02170 SA40_RS02240 SM00465 GIY-YIG type nucleases (URI domain) SA40_RS02265 SM00493 SA40_RS02265 SA40_RS02270 SM00650 Ribosomal RNA adenine dimethylases SA40_RS02300 SM01321 SA40_RS02300 SA40_RS02315 SM01400 SA40_RS02315 SA40_RS02330 SM00487 DEAD-like helicases superfamily SA40_RS02330 SM00490 helicase superfamily c-terminal domain SA40_RS02330 SM00982 SA40_RS02330 SA40_RS02330 SM01058 CarD-like/TRCF domain SA40_RS02345 SM00363 S4 RNA-binding domain SA40_RS02355 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS02360 SM00977 TilS substrate C-terminal domain SA40_RS02370 SM00382 ATPases associated with a variety of cellular activities SA40_RS02390 SM00905 Dihydroneopterin aldolase SA40_RS02470 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS02505 SM00382 ATPases associated with a variety of cellular activities SA40_RS02505 SM01086 C-terminal, D2-small domain, of ClpB protein SA40_RS02515 SM00382 ATPases associated with a variety of cellular activities SA40_RS02520 SM00670 Large family of predicted nucleotide-binding domains SA40_RS02535 SM00840 SA40_RS02535 SA40_RS02545 SM00967 RNA 2'-O ribose methyltransferase substrate binding SA40_RS02565 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SA40_RS02565 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SA40_RS02570 SM00649 Ribosomal protein L11/L12 SA40_RS02600 SM00663 RNA polymerase I subunit A N-terminus SA40_RS02620 SM00838 Elongation factor G C-terminus SA40_RS02620 SM00889 Elongation factor G, domain IV SA40_RS02740 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SA40_RS02790 SM00986 Uracil DNA glycosylase superfamily SA40_RS02790 SM00987 UreE urease accessory protein, C-terminal domain SA40_RS02820 SM01321 SA40_RS02820 SA40_RS02925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS02935 SM00829 Enoylreductase SA40_RS02950 SM00836 DALR anticodon binding domain SA40_RS02950 SM01016 Arginyl tRNA synthetase N terminal dom SA40_RS02955 SM00478 endonuclease III SA40_RS03070 SM00382 ATPases associated with a variety of cellular activities SA40_RS03075 SM00529 Helix-turn-helix diphteria tox regulatory element SA40_RS03075 SM00899 SA40_RS03075 SA40_RS03090 SM00382 ATPases associated with a variety of cellular activities SA40_RS03120 SM00382 ATPases associated with a variety of cellular activities SA40_RS03140 SM00382 ATPases associated with a variety of cellular activities SA40_RS03160 SM01120 SA40_RS03160 SA40_RS03205 SM00448 cheY-homologous receiver domain SA40_RS03205 SM00862 Transcriptional regulatory protein, C terminal SA40_RS03210 SM00387 Histidine kinase-like ATPases SA40_RS03215 SM00382 ATPases associated with a variety of cellular activities SA40_RS03235 SM00257 Lysin motif SA40_RS03245 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS03340 SM00382 ATPases associated with a variety of cellular activities SA40_RS03345 SM00382 ATPases associated with a variety of cellular activities SA40_RS03350 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS03355 SM00833 Cobalamin synthesis protein cobW C-terminal domain SA40_RS03410 SM00420 helix_turn_helix, Deoxyribose operon repressor SA40_RS03410 SM01134 SA40_RS03410 SA40_RS03435 SM01091 Transporter associated domain SA40_RS03450 SM00387 Histidine kinase-like ATPases SA40_RS03450 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS03455 SM00448 cheY-homologous receiver domain SA40_RS03455 SM00862 Transcriptional regulatory protein, C terminal SA40_RS03510 SM00796 Allophanate hydrolase subunit 1 SA40_RS03515 SM00797 Allophanate hydrolase subunit 2 SA40_RS03530 SM00382 ATPases associated with a variety of cellular activities SA40_RS03535 SM00341 Helicase and RNase D C-terminal SA40_RS03535 SM00487 DEAD-like helicases superfamily SA40_RS03535 SM00490 helicase superfamily c-terminal domain SA40_RS03535 SM00956 SA40_RS03535 SA40_RS03540 SM00382 ATPases associated with a variety of cellular activities SA40_RS03560 SM00046 Diacylglycerol kinase catalytic domain (presumed) SA40_RS03615 SM00382 ATPases associated with a variety of cellular activities SA40_RS03670 SM00267 diguanylate cyclase SA40_RS03690 SM00487 DEAD-like helicases superfamily SA40_RS03690 SM00490 helicase superfamily c-terminal domain SA40_RS03705 SM00957 SecA DEAD-like domain SA40_RS03705 SM00958 SecA preprotein cross-linking domain SA40_RS03715 SM00937 SA40_RS03715 SA40_RS03725 SM00257 Lysin motif SA40_RS03740 SM00487 DEAD-like helicases superfamily SA40_RS03740 SM00490 helicase superfamily c-terminal domain SA40_RS03765 SM00028 Tetratricopeptide repeats SA40_RS03805 SM00919 Malic enzyme, NAD binding domain SA40_RS03805 SM01274 SA40_RS03805 SA40_RS03830 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SA40_RS03850 SM01192 SA40_RS03850 SA40_RS03850 SM01193 SA40_RS03850 SA40_RS03870 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS03870 SM00357 Cold shock protein domain SA40_RS03870 SM00955 SA40_RS03870 SA40_RS03925 SM00318 Staphylococcal nuclease homologues SA40_RS03930 SM00357 Cold shock protein domain SA40_RS03970 SM00855 Phosphoglycerate mutase family SA40_RS04030 SM00493 SA40_RS04030 SA40_RS04040 SM00382 ATPases associated with a variety of cellular activities SA40_RS04040 SM00930 SA40_RS04040 SA40_RS04080 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS04085 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS04110 SM00942 Primase C terminal 1 (PriCT-1) SA40_RS04200 SM00382 ATPases associated with a variety of cellular activities SA40_RS04265 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS04410 SM01298 SA40_RS04410 SA40_RS04420 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS04435 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SA40_RS04520 SM00382 ATPases associated with a variety of cellular activities SA40_RS04520 SM01086 C-terminal, D2-small domain, of ClpB protein SA40_RS04570 SM00825 Beta-ketoacyl synthase SA40_RS04590 SM00382 ATPases associated with a variety of cellular activities SA40_RS04595 SM00382 ATPases associated with a variety of cellular activities SA40_RS04610 SM00382 ATPases associated with a variety of cellular activities SA40_RS04615 SM00382 ATPases associated with a variety of cellular activities SA40_RS04670 SM01118 SA40_RS04670 SA40_RS04680 SM00954 Region found in RelA / SpoT proteins SA40_RS04695 SM00116 Domain in cystathionine beta-synthase and other proteins. SA40_RS04695 SM00924 MgtE intracellular N domain SA40_RS04770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SA40_RS04800 SM00914 SA40_RS04800 SA40_RS04850 SM00382 ATPases associated with a variety of cellular activities SA40_RS04935 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS04945 SM00047 Lysozyme subfamily 2 SA40_RS04945 SM00644 SA40_RS04945 SA40_RS05005 SM01001 AIR carboxylase SA40_RS05025 SM01211 SA40_RS05025 SA40_RS05050 SM00798 AICARFT/IMPCHase bienzyme SA40_RS05050 SM00851 MGS-like domain SA40_RS05055 SM01209 SA40_RS05055 SA40_RS05055 SM01210 SA40_RS05055 SA40_RS05065 SM00382 ATPases associated with a variety of cellular activities SA40_RS05130 SM00849 Metallo-beta-lactamase superfamily SA40_RS05160 SM00861 Transketolase, pyrimidine binding domain SA40_RS05180 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS05185 SM00382 ATPases associated with a variety of cellular activities SA40_RS05235 SM00838 Elongation factor G C-terminus SA40_RS05260 SM00878 Biotin carboxylase C-terminal domain SA40_RS05340 SM00725 NEAr Transporter domain SA40_RS05345 SM00725 NEAr Transporter domain SA40_RS05350 SM00725 NEAr Transporter domain SA40_RS05385 SM00967 RNA 2'-O ribose methyltransferase substrate binding SA40_RS05395 SM00873 B3/4 domain SA40_RS05395 SM00874 tRNA synthetase B5 domain SA40_RS05395 SM00896 Ferredoxin-fold anticodon binding domain SA40_RS05415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SA40_RS05415 SM00481 DNA polymerase alpha chain like domain SA40_RS05415 SM00483 DNA polymerase X family SA40_RS05420 SM00463 Small MutS-related domain SA40_RS05420 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SA40_RS05420 SM00534 ATPase domain of DNA mismatch repair MUTS family SA40_RS05435 SM00465 GIY-YIG type nucleases (URI domain) SA40_RS05635 SM00740 SA40_RS05635 SA40_RS05655 SM00842 Cell division protein FtsA SA40_RS05660 SM00864 Tubulin/FtsZ family, GTPase domain SA40_RS05660 SM00865 Tubulin/FtsZ family, C-terminal domain SA40_RS05685 SM00363 S4 RNA-binding domain SA40_RS05720 SM00363 S4 RNA-binding domain SA40_RS05745 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SA40_RS05750 SM00851 MGS-like domain SA40_RS05750 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SA40_RS05750 SM01209 SA40_RS05750 SA40_RS05755 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SA40_RS05780 SM00072 Guanylate kinase homologues. SA40_RS05785 SM01409 SA40_RS05785 SA40_RS05795 SM00487 DEAD-like helicases superfamily SA40_RS05795 SM00490 helicase superfamily c-terminal domain SA40_RS05830 SM00331 Sigma factor PP2C-like phosphatases SA40_RS05830 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SA40_RS05835 SM00220 Serine/Threonine protein kinases, catalytic domain SA40_RS05835 SM00740 SA40_RS05835 SA40_RS05850 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SA40_RS05865 SM01120 SA40_RS05865 SA40_RS05865 SM01121 SA40_RS05865 SA40_RS05870 SM00487 DEAD-like helicases superfamily SA40_RS05870 SM00490 helicase superfamily c-terminal domain SA40_RS05885 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SA40_RS05890 SM00822 SA40_RS05890 SA40_RS05905 SM00358 Double-stranded RNA binding motif SA40_RS05905 SM00535 Ribonuclease III family SA40_RS05910 SM00968 SMC proteins Flexible Hinge Domain SA40_RS05915 SM00382 ATPases associated with a variety of cellular activities SA40_RS05915 SM00962 SRP54-type protein, GTPase domain SA40_RS05915 SM00963 SRP54-type protein, helical bundle domain SA40_RS05925 SM00382 ATPases associated with a variety of cellular activities SA40_RS05925 SM00962 SRP54-type protein, GTPase domain SA40_RS05925 SM00963 SRP54-type protein, helical bundle domain SA40_RS05975 SM00881 CoA binding domain SA40_RS05995 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SA40_RS05995 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SA40_RS05995 SM00493 SA40_RS05995 SA40_RS06015 SM00382 ATPases associated with a variety of cellular activities SA40_RS06015 SM01086 C-terminal, D2-small domain, of ClpB protein SA40_RS06075 SM00479 SA40_RS06075 SA40_RS06075 SM00481 DNA polymerase alpha chain like domain SA40_RS06085 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS06085 SM00322 K homology RNA-binding domain SA40_RS06115 SM00904 Riboflavin kinase SA40_RS06120 SM01387 SA40_RS06120 SA40_RS06125 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS06125 SM00322 K homology RNA-binding domain SA40_RS06130 SM00849 Metallo-beta-lactamase superfamily SA40_RS06135 SM00382 ATPases associated with a variety of cellular activities SA40_RS06135 SM00843 SA40_RS06135 SA40_RS06140 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS06140 SM00866 SA40_RS06140 SA40_RS06165 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS06180 SM00852 Probable molybdopterin binding domain SA40_RS06185 SM00382 ATPases associated with a variety of cellular activities SA40_RS06190 SM00322 K homology RNA-binding domain SA40_RS06190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS06220 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS06235 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SA40_RS06235 SM00534 ATPase domain of DNA mismatch repair MUTS family SA40_RS06240 SM00853 MutL C terminal dimerisation domain SA40_RS06240 SM01340 SA40_RS06240 SA40_RS06295 SM00422 helix_turn_helix, mercury resistance SA40_RS06300 SM01230 SA40_RS06300 SA40_RS06415 SM00155 Phospholipase D. Active site motifs. SA40_RS06425 SM00318 Staphylococcal nuclease homologues SA40_RS06480 SM01060 SA40_RS06480 SA40_RS06495 SM01240 SA40_RS06495 SA40_RS06525 SM00861 Transketolase, pyrimidine binding domain SA40_RS06580 SM01207 SA40_RS06580 SA40_RS06585 SM00387 Histidine kinase-like ATPases SA40_RS06585 SM00433 TopoisomeraseII SA40_RS06590 SM00434 DNA Topoisomerase IV SA40_RS06605 SM01061 CAT RNA binding domain SA40_RS06710 SM00382 ATPases associated with a variety of cellular activities SA40_RS06715 SM00382 ATPases associated with a variety of cellular activities SA40_RS06750 SM00382 ATPases associated with a variety of cellular activities SA40_RS06775 SM00382 ATPases associated with a variety of cellular activities SA40_RS06785 SM00859 Semialdehyde dehydrogenase, NAD binding domain SA40_RS06790 SM01130 SA40_RS06790 SA40_RS06810 SM01005 Alanine racemase, C-terminal domain SA40_RS06830 SM00357 Cold shock protein domain SA40_RS06865 SM00327 von Willebrand factor (vWF) type A domain SA40_RS06890 SM00861 Transketolase, pyrimidine binding domain SA40_RS06895 SM00387 Histidine kinase-like ATPases SA40_RS06895 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS06900 SM00448 cheY-homologous receiver domain SA40_RS06900 SM00862 Transcriptional regulatory protein, C terminal SA40_RS06905 SM00014 Acid phosphatase homologues SA40_RS06920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SA40_RS06920 SM00245 tail specific protease SA40_RS06970 SM00567 E-Z type HEAT repeats SA40_RS06970 SM00932 Scaffold protein Nfu/NifU N terminal SA40_RS06975 SM00932 Scaffold protein Nfu/NifU N terminal SA40_RS07020 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SA40_RS07020 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SA40_RS07025 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SA40_RS07025 SM00475 5'-3' exonuclease SA40_RS07045 SM00981 SA40_RS07045 SA40_RS07085 SM00478 endonuclease III SA40_RS07085 SM00525 SA40_RS07085 SA40_RS07100 SM00479 SA40_RS07100 SA40_RS07100 SM00491 SA40_RS07100 SA40_RS07135 SM00914 SA40_RS07135 SA40_RS07140 SM00028 Tetratricopeptide repeats SA40_RS07165 SM00562 SA40_RS07165 SA40_RS07190 SM00411 bacterial (prokaryotic) histone like domain SA40_RS07205 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS07230 SM00870 SA40_RS07230 SA40_RS07245 SM00257 Lysin motif SA40_RS07250 SM00487 DEAD-like helicases superfamily SA40_RS07250 SM00490 helicase superfamily c-terminal domain SA40_RS07295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SA40_RS07295 SM00387 Histidine kinase-like ATPases SA40_RS07295 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS07300 SM00448 cheY-homologous receiver domain SA40_RS07300 SM00862 Transcriptional regulatory protein, C terminal SA40_RS07305 SM00363 S4 RNA-binding domain SA40_RS07370 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS07370 SM00871 Bacterial transcription activator, effector binding domain SA40_RS07375 SM00642 Alpha-amylase domain SA40_RS07380 SM00354 helix_turn _helix lactose operon repressor SA40_RS07395 SM01350 SA40_RS07395 SA40_RS07425 SM00861 Transketolase, pyrimidine binding domain SA40_RS07475 SM00878 Biotin carboxylase C-terminal domain SA40_RS07485 SM00841 Elongation factor P, C-terminal SA40_RS07485 SM01185 SA40_RS07485 SA40_RS07510 SM00450 Rhodanese Homology Domain SA40_RS07570 SM00849 Metallo-beta-lactamase superfamily SA40_RS07625 SM00382 ATPases associated with a variety of cellular activities SA40_RS07630 SM00518 AP endonuclease family 2 SA40_RS07635 SM00487 DEAD-like helicases superfamily SA40_RS07635 SM00490 helicase superfamily c-terminal domain SA40_RS07655 SM00400 zinc finger SA40_RS07655 SM00493 SA40_RS07655 SA40_RS07665 SM00116 Domain in cystathionine beta-synthase and other proteins. SA40_RS07725 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS07740 SM00271 DnaJ molecular chaperone homology domain SA40_RS07760 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS07765 SM00838 Elongation factor G C-terminus SA40_RS07780 SM00849 Metallo-beta-lactamase superfamily SA40_RS07790 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SA40_RS07805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS07815 SM01103 SA40_RS07815 SA40_RS07850 SM01321 SA40_RS07850 SA40_RS07880 SM00878 Biotin carboxylase C-terminal domain SA40_RS07890 SM00797 Allophanate hydrolase subunit 2 SA40_RS07895 SM00796 Allophanate hydrolase subunit 1 SA40_RS07930 SM00732 Likely ribonuclease with RNase H fold. SA40_RS07940 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SA40_RS07945 SM00382 ATPases associated with a variety of cellular activities SA40_RS07950 SM00028 Tetratricopeptide repeats SA40_RS07985 SM00382 ATPases associated with a variety of cellular activities SA40_RS08010 SM00287 Bacterial SH3 domain homologues SA40_RS08010 SM00646 SA40_RS08010 SA40_RS08020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS08020 SM00954 Region found in RelA / SpoT proteins SA40_RS08040 SM01323 SA40_RS08040 SA40_RS08055 SM00382 ATPases associated with a variety of cellular activities SA40_RS08060 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SA40_RS08160 SM01004 Delta-aminolevulinic acid dehydratase SA40_RS08190 SM00382 ATPases associated with a variety of cellular activities SA40_RS08190 SM00994 ClpX C4-type zinc finger SA40_RS08190 SM01086 C-terminal, D2-small domain, of ClpB protein SA40_RS08240 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SA40_RS08265 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SA40_RS08275 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SA40_RS08275 SM01232 SA40_RS08275 SA40_RS08280 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SA40_RS08280 SM00474 3'-5' exonuclease SA40_RS08280 SM00475 5'-3' exonuclease SA40_RS08280 SM00482 DNA polymerase A domain SA40_RS08290 SM00387 Histidine kinase-like ATPases SA40_RS08290 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS08295 SM00448 cheY-homologous receiver domain SA40_RS08295 SM00862 Transcriptional regulatory protein, C terminal SA40_RS08305 SM01329 SA40_RS08305 SA40_RS08340 SM00919 Malic enzyme, NAD binding domain SA40_RS08340 SM01274 SA40_RS08340 SA40_RS08345 SM00481 DNA polymerase alpha chain like domain SA40_RS08355 SM00116 Domain in cystathionine beta-synthase and other proteins. SA40_RS08365 SM00849 Metallo-beta-lactamase superfamily SA40_RS08380 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SA40_RS08380 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SA40_RS08410 SM00981 SA40_RS08410 SA40_RS08425 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SA40_RS08430 SM00363 S4 RNA-binding domain SA40_RS08430 SM01390 SA40_RS08430 SA40_RS08485 SM00563 Phosphate acyltransferases SA40_RS08490 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SA40_RS08495 SM00363 S4 RNA-binding domain SA40_RS08510 SM00725 NEAr Transporter domain SA40_RS08540 SM00354 helix_turn _helix lactose operon repressor SA40_RS08550 SM00830 Chorismate mutase type II SA40_RS08575 SM00843 SA40_RS08575 SA40_RS08605 SM00849 Metallo-beta-lactamase superfamily SA40_RS08635 SM00363 S4 RNA-binding domain SA40_RS08655 SM00450 Rhodanese Homology Domain SA40_RS08670 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS08680 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS08725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SA40_RS08735 SM00226 Low molecular weight phosphatase family SA40_RS08740 SM00047 Lysozyme subfamily 2 SA40_RS08825 SM01234 SA40_RS08825 SA40_RS08845 SM00894 Excalibur calcium-binding domain SA40_RS08915 SM00287 Bacterial SH3 domain homologues SA40_RS08920 SM00382 ATPases associated with a variety of cellular activities SA40_RS09025 SM00382 ATPases associated with a variety of cellular activities SA40_RS09050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS09080 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS09085 SM00421 helix_turn_helix, Lux Regulon SA40_RS09085 SM00448 cheY-homologous receiver domain SA40_RS09140 SM00382 ATPases associated with a variety of cellular activities SA40_RS09145 SM00062 Bacterial periplasmic substrate-binding proteins SA40_RS09335 SM00382 ATPases associated with a variety of cellular activities SA40_RS09345 SM00478 endonuclease III SA40_RS09415 SM00226 Low molecular weight phosphatase family SA40_RS09430 SM00421 helix_turn_helix, Lux Regulon SA40_RS09430 SM00448 cheY-homologous receiver domain SA40_RS09435 SM00387 Histidine kinase-like ATPases SA40_RS09490 SM00479 SA40_RS09490 SA40_RS09510 SM00046 Diacylglycerol kinase catalytic domain (presumed) SA40_RS09520 SM00845 GatB domain SA40_RS09545 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SA40_RS09545 SM00292 breast cancer carboxy-terminal domain SA40_RS09545 SM00532 Ligase N family SA40_RS09565 SM00998 Adenylosuccinate lyase C-terminus SA40_RS09620 SM00710 Parallel beta-helix repeats SA40_RS09630 SM01131 SA40_RS09630 SA40_RS09690 SM00382 ATPases associated with a variety of cellular activities SA40_RS09700 SM00382 ATPases associated with a variety of cellular activities SA40_RS09705 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS09770 SM00883 Chaperonin 10 Kd subunit SA40_RS09800 SM00793 Accessory gene regulator B SA40_RS09805 SM00794 Staphylococcal AgrD protein SA40_RS09815 SM00448 cheY-homologous receiver domain SA40_RS09815 SM00850 LytTr DNA-binding domain SA40_RS09830 SM00640 Glycosyl hydrolases family 32 SA40_RS09835 SM00354 helix_turn _helix lactose operon repressor SA40_RS09855 SM00881 CoA binding domain SA40_RS09860 SM00382 ATPases associated with a variety of cellular activities SA40_RS09875 SM00534 ATPase domain of DNA mismatch repair MUTS family SA40_RS09925 SM00917 LeuA allosteric (dimerisation) domain SA40_RS09930 SM01329 SA40_RS09930 SA40_RS09980 SM00731 SprT homologues. SA40_RS09985 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS09985 SM00732 Likely ribonuclease with RNase H fold. SA40_RS10005 SM00331 Sigma factor PP2C-like phosphatases SA40_RS10005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SA40_RS10025 SM01005 Alanine racemase, C-terminal domain SA40_RS10070 SM00387 Histidine kinase-like ATPases SA40_RS10070 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS10075 SM00448 cheY-homologous receiver domain SA40_RS10075 SM00862 Transcriptional regulatory protein, C terminal SA40_RS10080 SM00487 DEAD-like helicases superfamily SA40_RS10080 SM00490 helicase superfamily c-terminal domain SA40_RS10115 SM00155 Phospholipase D. Active site motifs. SA40_RS10120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SA40_RS10170 SM00382 ATPases associated with a variety of cellular activities SA40_RS10215 SM00382 ATPases associated with a variety of cellular activities SA40_RS10275 SM00226 Low molecular weight phosphatase family SA40_RS10290 SM00937 SA40_RS10290 SA40_RS10305 SM00357 Cold shock protein domain SA40_RS10305 SM00382 ATPases associated with a variety of cellular activities SA40_RS10305 SM00959 Rho termination factor, N-terminal domain SA40_RS10385 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SA40_RS10395 SM01133 SA40_RS10395 SA40_RS10435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SA40_RS10480 SM00382 ATPases associated with a variety of cellular activities SA40_RS10690 SM00829 Enoylreductase SA40_RS10695 SM00829 Enoylreductase SA40_RS10720 SM01133 SA40_RS10720 SA40_RS10740 SM00420 helix_turn_helix, Deoxyribose operon repressor SA40_RS10740 SM01134 SA40_RS10740 SA40_RS10765 SM00422 helix_turn_helix, mercury resistance SA40_RS10835 SM00382 ATPases associated with a variety of cellular activities SA40_RS10840 SM00382 ATPases associated with a variety of cellular activities SA40_RS10850 SM00662 RNA polymerases D SA40_RS10870 SM00316 Ribosomal protein S1-like RNA-binding domain SA40_RS10925 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SA40_RS10930 SM01374 SA40_RS10930 SA40_RS10950 SM00322 K homology RNA-binding domain SA40_RS10965 SM01382 SA40_RS10965 SA40_RS10965 SM01383 SA40_RS10965 SA40_RS10985 SM01403 SA40_RS10985 SA40_RS11000 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SA40_RS11000 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SA40_RS11000 SM00493 SA40_RS11000 SA40_RS11060 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS11080 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS11105 SM00852 Probable molybdopterin binding domain SA40_RS11115 SM00852 Probable molybdopterin binding domain SA40_RS11125 SM00382 ATPases associated with a variety of cellular activities SA40_RS11190 SM00988 UreE urease accessory protein, N-terminal domain SA40_RS11230 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS11285 SM00047 Lysozyme subfamily 2 SA40_RS11300 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SA40_RS11300 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SA40_RS11315 SM00420 helix_turn_helix, Deoxyribose operon repressor SA40_RS11460 SM00382 ATPases associated with a variety of cellular activities SA40_RS11550 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS11560 SM00382 ATPases associated with a variety of cellular activities SA40_RS11570 SM00448 cheY-homologous receiver domain SA40_RS11570 SM00862 Transcriptional regulatory protein, C terminal SA40_RS11575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SA40_RS11575 SM00387 Histidine kinase-like ATPases SA40_RS11575 SM00388 His Kinase A (phosphoacceptor) domain SA40_RS11580 SM00850 LytTr DNA-binding domain SA40_RS11595 SM00382 ATPases associated with a variety of cellular activities SA40_RS11630 SM00829 Enoylreductase SA40_RS11685 SM00342 helix_turn_helix, arabinose operon control protein SA40_RS11710 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS11730 SM00422 helix_turn_helix, mercury resistance SA40_RS11735 SM00421 helix_turn_helix, Lux Regulon SA40_RS11735 SM00448 cheY-homologous receiver domain SA40_RS11740 SM00387 Histidine kinase-like ATPases SA40_RS11765 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SA40_RS11845 SM00382 ATPases associated with a variety of cellular activities SA40_RS11855 SM00062 Bacterial periplasmic substrate-binding proteins SA40_RS11855 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SA40_RS11870 SM00855 Phosphoglycerate mutase family SA40_RS11925 SM00729 Elongator protein 3, MiaB family, Radical SAM SA40_RS11925 SM00876 Biotin and Thiamin Synthesis associated domain SA40_RS11950 SM00382 ATPases associated with a variety of cellular activities SA40_RS11955 SM00382 ATPases associated with a variety of cellular activities SA40_RS11985 SM00871 Bacterial transcription activator, effector binding domain SA40_RS12065 SM00116 Domain in cystathionine beta-synthase and other proteins. SA40_RS12065 SM00382 ATPases associated with a variety of cellular activities SA40_RS12105 SM00382 ATPases associated with a variety of cellular activities SA40_RS12135 SM00382 ATPases associated with a variety of cellular activities SA40_RS12140 SM00382 ATPases associated with a variety of cellular activities SA40_RS12285 SM00487 DEAD-like helicases superfamily SA40_RS12285 SM00490 helicase superfamily c-terminal domain SA40_RS12385 SM00345 helix_turn_helix gluconate operon transcriptional repressor SA40_RS12385 SM00895 SA40_RS12385 SA40_RS12390 SM00422 helix_turn_helix, mercury resistance SA40_RS12395 SM00954 Region found in RelA / SpoT proteins SA40_RS12425 SM00382 ATPases associated with a variety of cellular activities SA40_RS12485 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS12495 SM01321 SA40_RS12495 SA40_RS12520 SM00382 ATPases associated with a variety of cellular activities SA40_RS12645 SM00382 ATPases associated with a variety of cellular activities SA40_RS12645 SM01086 C-terminal, D2-small domain, of ClpB protein SA40_RS12660 SM00899 SA40_RS12660 SA40_RS12685 SM01266 SA40_RS12685 SA40_RS12890 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SA40_RS13085 SM00382 ATPases associated with a variety of cellular activities SA40_RS13090 SM00387 Histidine kinase-like ATPases SA40_RS13095 SM00448 cheY-homologous receiver domain SA40_RS13095 SM00862 Transcriptional regulatory protein, C terminal SA40_RS13110 SM00098 Alkaline phosphatase homologues SA40_RS13115 SM00347 helix_turn_helix multiple antibiotic resistance protein SA40_RS13200 SM00047 Lysozyme subfamily 2 SA40_RS13225 SM00957 SecA DEAD-like domain SA40_RS13225 SM00958 SecA preprotein cross-linking domain SA40_RS13255 SM00903 Flavin reductase like domain SA40_RS13285 SM00903 Flavin reductase like domain SA40_RS13420 SM00382 ATPases associated with a variety of cellular activities SA40_RS13435 SM00867 YceI-like domain SA40_RS13445 SM00450 Rhodanese Homology Domain SA40_RS13500 SM00382 ATPases associated with a variety of cellular activities SA40_RS13530 SM00357 Cold shock protein domain SA40_RS13535 SM00530 Helix-turn-helix XRE-family like proteins SA40_RS13550 SM00470 ParB-like nuclease domain SA40_RS13560 SM01228 SA40_RS13560