RU53_RS00005 SM00382 ATPases associated with a variety of cellular activities RU53_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RU53_RS00010 SM00480 DNA polymerase III beta subunit RU53_RS00025 SM00387 Histidine kinase-like ATPases RU53_RS00025 SM00433 TopoisomeraseII RU53_RS00030 SM00434 DNA Topoisomerase IV RU53_RS00070 SM00267 diguanylate cyclase RU53_RS00085 SM00788 Adenylosuccinate synthetase RU53_RS00100 SM00448 cheY-homologous receiver domain RU53_RS00100 SM00862 Transcriptional regulatory protein, C terminal RU53_RS00105 SM00091 PAS domain RU53_RS00105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU53_RS00105 SM00387 Histidine kinase-like ATPases RU53_RS00105 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS00120 SM00849 Metallo-beta-lactamase superfamily RU53_RS00200 SM00857 Resolvase, N terminal domain RU53_RS00225 SM00487 DEAD-like helicases superfamily RU53_RS00275 SM00487 DEAD-like helicases superfamily RU53_RS00330 SM00450 Rhodanese Homology Domain RU53_RS00335 SM00450 Rhodanese Homology Domain RU53_RS00335 SM00849 Metallo-beta-lactamase superfamily RU53_RS00385 SM00148 Phospholipase C, catalytic domain (part); domain X RU53_RS00425 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS00460 SM00257 Lysin motif RU53_RS00465 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS00525 SM00470 ParB-like nuclease domain RU53_RS00545 SM00822 RU53_RS00545 RU53_RS00590 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS00610 SM01133 RU53_RS00610 RU53_RS00630 SM00382 ATPases associated with a variety of cellular activities RU53_RS00635 SM00062 Bacterial periplasmic substrate-binding proteins RU53_RS00655 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS00735 SM00984 UDP binding domain RU53_RS00775 SM00382 ATPases associated with a variety of cellular activities RU53_RS00835 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU53_RS00895 SM00487 DEAD-like helicases superfamily RU53_RS00915 SM00382 ATPases associated with a variety of cellular activities RU53_RS00955 SM00382 ATPases associated with a variety of cellular activities RU53_RS01005 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS01005 SM00448 cheY-homologous receiver domain RU53_RS01080 SM00882 Coenzyme A transferase RU53_RS01160 SM00829 Enoylreductase RU53_RS01170 SM00829 Enoylreductase RU53_RS01220 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RU53_RS01220 SM00387 Histidine kinase-like ATPases RU53_RS01225 SM00448 cheY-homologous receiver domain RU53_RS01225 SM00850 LytTr DNA-binding domain RU53_RS01245 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS01245 SM00866 RU53_RS01245 RU53_RS01290 SM00354 helix_turn _helix lactose operon repressor RU53_RS01320 SM00382 ATPases associated with a variety of cellular activities RU53_RS01475 SM00382 ATPases associated with a variety of cellular activities RU53_RS01505 SM01130 RU53_RS01505 RU53_RS01560 SM00506 Appr-1"-p processing enzyme RU53_RS01600 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS01680 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS01690 SM00382 ATPases associated with a variety of cellular activities RU53_RS01740 SM00470 ParB-like nuclease domain RU53_RS01825 SM00855 Phosphoglycerate mutase family RU53_RS01895 SM00116 Domain in cystathionine beta-synthase and other proteins. RU53_RS01895 SM01240 RU53_RS01895 RU53_RS02155 SM00833 Cobalamin synthesis protein cobW C-terminal domain RU53_RS02185 SM00014 Acid phosphatase homologues RU53_RS02215 SM00382 ATPases associated with a variety of cellular activities RU53_RS02215 SM00930 RU53_RS02215 RU53_RS02230 SM00257 Lysin motif RU53_RS02290 SM00642 Alpha-amylase domain RU53_RS02295 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS02295 SM00866 RU53_RS02295 RU53_RS02310 SM00382 ATPases associated with a variety of cellular activities RU53_RS02320 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU53_RS02320 SM00493 RU53_RS02320 RU53_RS02385 SM00465 GIY-YIG type nucleases (URI domain) RU53_RS02410 SM00493 RU53_RS02410 RU53_RS02415 SM00650 Ribosomal RNA adenine dimethylases RU53_RS02455 SM01400 RU53_RS02455 RU53_RS02470 SM00487 DEAD-like helicases superfamily RU53_RS02470 SM00490 helicase superfamily c-terminal domain RU53_RS02470 SM00982 RU53_RS02470 RU53_RS02470 SM01058 CarD-like/TRCF domain RU53_RS02485 SM00363 S4 RNA-binding domain RU53_RS02495 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS02500 SM00977 TilS substrate C-terminal domain RU53_RS02510 SM00382 ATPases associated with a variety of cellular activities RU53_RS02530 SM00905 Dihydroneopterin aldolase RU53_RS02630 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS02665 SM00382 ATPases associated with a variety of cellular activities RU53_RS02665 SM01086 C-terminal, D2-small domain, of ClpB protein RU53_RS02675 SM00382 ATPases associated with a variety of cellular activities RU53_RS02680 SM00670 Large family of predicted nucleotide-binding domains RU53_RS02695 SM00840 RU53_RS02695 RU53_RS02705 SM00967 RNA 2'-O ribose methyltransferase substrate binding RU53_RS02725 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RU53_RS02725 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU53_RS02730 SM00649 Ribosomal protein L11/L12 RU53_RS02760 SM00663 RNA polymerase I subunit A N-terminus RU53_RS02780 SM00838 Elongation factor G C-terminus RU53_RS02780 SM00889 Elongation factor G, domain IV RU53_RS02895 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RU53_RS02945 SM00986 Uracil DNA glycosylase superfamily RU53_RS02945 SM00987 UreE urease accessory protein, C-terminal domain RU53_RS03015 SM00857 Resolvase, N terminal domain RU53_RS03030 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS03035 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS03040 SM01040 BRO family, N-terminal domain RU53_RS03305 SM00047 Lysozyme subfamily 2 RU53_RS03325 SM00287 Bacterial SH3 domain homologues RU53_RS03325 SM00644 RU53_RS03325 RU53_RS03420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS03430 SM00829 Enoylreductase RU53_RS03445 SM00836 DALR anticodon binding domain RU53_RS03445 SM01016 Arginyl tRNA synthetase N terminal dom RU53_RS03450 SM00478 endonuclease III RU53_RS03565 SM00382 ATPases associated with a variety of cellular activities RU53_RS03570 SM00529 Helix-turn-helix diphteria tox regulatory element RU53_RS03570 SM00899 RU53_RS03570 RU53_RS03585 SM00382 ATPases associated with a variety of cellular activities RU53_RS03615 SM00382 ATPases associated with a variety of cellular activities RU53_RS03635 SM00382 ATPases associated with a variety of cellular activities RU53_RS03655 SM01120 RU53_RS03655 RU53_RS03700 SM00448 cheY-homologous receiver domain RU53_RS03700 SM00862 Transcriptional regulatory protein, C terminal RU53_RS03705 SM00387 Histidine kinase-like ATPases RU53_RS03710 SM00382 ATPases associated with a variety of cellular activities RU53_RS03730 SM00257 Lysin motif RU53_RS03740 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS03840 SM00382 ATPases associated with a variety of cellular activities RU53_RS03845 SM00382 ATPases associated with a variety of cellular activities RU53_RS03850 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS03855 SM00833 Cobalamin synthesis protein cobW C-terminal domain RU53_RS03910 SM00420 helix_turn_helix, Deoxyribose operon repressor RU53_RS03910 SM01134 RU53_RS03910 RU53_RS03935 SM01091 Transporter associated domain RU53_RS03950 SM00387 Histidine kinase-like ATPases RU53_RS03950 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS03955 SM00448 cheY-homologous receiver domain RU53_RS03955 SM00862 Transcriptional regulatory protein, C terminal RU53_RS04010 SM00796 Allophanate hydrolase subunit 1 RU53_RS04015 SM00797 Allophanate hydrolase subunit 2 RU53_RS04030 SM00382 ATPases associated with a variety of cellular activities RU53_RS04035 SM00341 Helicase and RNase D C-terminal RU53_RS04035 SM00487 DEAD-like helicases superfamily RU53_RS04035 SM00490 helicase superfamily c-terminal domain RU53_RS04035 SM00956 RU53_RS04035 RU53_RS04040 SM00382 ATPases associated with a variety of cellular activities RU53_RS04065 SM00046 Diacylglycerol kinase catalytic domain (presumed) RU53_RS04120 SM00382 ATPases associated with a variety of cellular activities RU53_RS04175 SM00267 diguanylate cyclase RU53_RS04195 SM00487 DEAD-like helicases superfamily RU53_RS04195 SM00490 helicase superfamily c-terminal domain RU53_RS04210 SM00957 SecA DEAD-like domain RU53_RS04210 SM00958 SecA preprotein cross-linking domain RU53_RS04220 SM00937 RU53_RS04220 RU53_RS04230 SM00257 Lysin motif RU53_RS04245 SM00487 DEAD-like helicases superfamily RU53_RS04245 SM00490 helicase superfamily c-terminal domain RU53_RS04270 SM00028 Tetratricopeptide repeats RU53_RS04325 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU53_RS04345 SM01192 RU53_RS04345 RU53_RS04345 SM01193 RU53_RS04345 RU53_RS04365 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS04365 SM00357 Cold shock protein domain RU53_RS04365 SM00955 RU53_RS04365 RU53_RS04380 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS04390 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS04410 SM00942 Primase C terminal 1 (PriCT-1) RU53_RS04540 SM00318 Staphylococcal nuclease homologues RU53_RS04545 SM00357 Cold shock protein domain RU53_RS04585 SM00855 Phosphoglycerate mutase family RU53_RS04645 SM00493 RU53_RS04645 RU53_RS04655 SM00382 ATPases associated with a variety of cellular activities RU53_RS04655 SM00930 RU53_RS04655 RU53_RS04680 SM00382 ATPases associated with a variety of cellular activities RU53_RS04740 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS04885 SM01298 RU53_RS04885 RU53_RS04895 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS04910 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU53_RS04995 SM00382 ATPases associated with a variety of cellular activities RU53_RS04995 SM01086 C-terminal, D2-small domain, of ClpB protein RU53_RS05040 SM00825 Beta-ketoacyl synthase RU53_RS05060 SM00382 ATPases associated with a variety of cellular activities RU53_RS05065 SM00382 ATPases associated with a variety of cellular activities RU53_RS05080 SM00382 ATPases associated with a variety of cellular activities RU53_RS05085 SM00382 ATPases associated with a variety of cellular activities RU53_RS05135 SM01118 RU53_RS05135 RU53_RS05145 SM00954 Region found in RelA / SpoT proteins RU53_RS05160 SM00116 Domain in cystathionine beta-synthase and other proteins. RU53_RS05160 SM00924 MgtE intracellular N domain RU53_RS05225 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU53_RS05255 SM00914 RU53_RS05255 RU53_RS05295 SM00382 ATPases associated with a variety of cellular activities RU53_RS05380 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS05390 SM00047 Lysozyme subfamily 2 RU53_RS05390 SM00644 RU53_RS05390 RU53_RS05450 SM01001 AIR carboxylase RU53_RS05470 SM01211 RU53_RS05470 RU53_RS05495 SM00798 AICARFT/IMPCHase bienzyme RU53_RS05495 SM00851 MGS-like domain RU53_RS05500 SM01209 RU53_RS05500 RU53_RS05500 SM01210 RU53_RS05500 RU53_RS05510 SM00382 ATPases associated with a variety of cellular activities RU53_RS05575 SM00849 Metallo-beta-lactamase superfamily RU53_RS05605 SM00861 Transketolase, pyrimidine binding domain RU53_RS05625 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS05630 SM00382 ATPases associated with a variety of cellular activities RU53_RS05680 SM00838 Elongation factor G C-terminus RU53_RS05705 SM00878 Biotin carboxylase C-terminal domain RU53_RS05785 SM00725 NEAr Transporter domain RU53_RS05790 SM00725 NEAr Transporter domain RU53_RS05795 SM00725 NEAr Transporter domain RU53_RS05830 SM00967 RNA 2'-O ribose methyltransferase substrate binding RU53_RS05840 SM00873 B3/4 domain RU53_RS05840 SM00874 tRNA synthetase B5 domain RU53_RS05840 SM00896 Ferredoxin-fold anticodon binding domain RU53_RS05860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU53_RS05860 SM00481 DNA polymerase alpha chain like domain RU53_RS05860 SM00483 DNA polymerase X family RU53_RS05865 SM00463 Small MutS-related domain RU53_RS05865 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RU53_RS05865 SM00534 ATPase domain of DNA mismatch repair MUTS family RU53_RS05880 SM00465 GIY-YIG type nucleases (URI domain) RU53_RS06080 SM00740 RU53_RS06080 RU53_RS06100 SM00842 Cell division protein FtsA RU53_RS06105 SM00864 Tubulin/FtsZ family, GTPase domain RU53_RS06105 SM00865 Tubulin/FtsZ family, C-terminal domain RU53_RS06130 SM00363 S4 RNA-binding domain RU53_RS06160 SM00363 S4 RNA-binding domain RU53_RS06185 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RU53_RS06190 SM00851 MGS-like domain RU53_RS06190 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RU53_RS06190 SM01209 RU53_RS06190 RU53_RS06195 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RU53_RS06220 SM00072 Guanylate kinase homologues. RU53_RS06225 SM01409 RU53_RS06225 RU53_RS06235 SM00487 DEAD-like helicases superfamily RU53_RS06235 SM00490 helicase superfamily c-terminal domain RU53_RS06270 SM00331 Sigma factor PP2C-like phosphatases RU53_RS06270 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RU53_RS06275 SM00220 Serine/Threonine protein kinases, catalytic domain RU53_RS06275 SM00740 RU53_RS06275 RU53_RS06290 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RU53_RS06305 SM01120 RU53_RS06305 RU53_RS06305 SM01121 RU53_RS06305 RU53_RS06310 SM00487 DEAD-like helicases superfamily RU53_RS06310 SM00490 helicase superfamily c-terminal domain RU53_RS06325 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RU53_RS06330 SM00822 RU53_RS06330 RU53_RS06345 SM00358 Double-stranded RNA binding motif RU53_RS06345 SM00535 Ribonuclease III family RU53_RS06350 SM00968 SMC proteins Flexible Hinge Domain RU53_RS06355 SM00382 ATPases associated with a variety of cellular activities RU53_RS06355 SM00962 SRP54-type protein, GTPase domain RU53_RS06355 SM00963 SRP54-type protein, helical bundle domain RU53_RS06365 SM00382 ATPases associated with a variety of cellular activities RU53_RS06365 SM00962 SRP54-type protein, GTPase domain RU53_RS06365 SM00963 SRP54-type protein, helical bundle domain RU53_RS06410 SM00881 CoA binding domain RU53_RS06415 SM00257 Lysin motif RU53_RS06430 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RU53_RS06430 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RU53_RS06430 SM00493 RU53_RS06430 RU53_RS06450 SM00382 ATPases associated with a variety of cellular activities RU53_RS06450 SM01086 C-terminal, D2-small domain, of ClpB protein RU53_RS06510 SM00479 RU53_RS06510 RU53_RS06510 SM00481 DNA polymerase alpha chain like domain RU53_RS06520 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS06520 SM00322 K homology RNA-binding domain RU53_RS06550 SM00904 Riboflavin kinase RU53_RS06555 SM01387 RU53_RS06555 RU53_RS06560 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS06560 SM00322 K homology RNA-binding domain RU53_RS06565 SM00849 Metallo-beta-lactamase superfamily RU53_RS06570 SM00382 ATPases associated with a variety of cellular activities RU53_RS06570 SM00843 RU53_RS06570 RU53_RS06575 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS06575 SM00866 RU53_RS06575 RU53_RS06600 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS06610 SM00852 Probable molybdopterin binding domain RU53_RS06615 SM00382 ATPases associated with a variety of cellular activities RU53_RS06620 SM00322 K homology RNA-binding domain RU53_RS06620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS06650 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS06665 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RU53_RS06665 SM00534 ATPase domain of DNA mismatch repair MUTS family RU53_RS06670 SM00853 MutL C terminal dimerisation domain RU53_RS06670 SM01340 RU53_RS06670 RU53_RS06725 SM00422 helix_turn_helix, mercury resistance RU53_RS06730 SM01230 RU53_RS06730 RU53_RS06815 SM00155 Phospholipase D. Active site motifs. RU53_RS06820 SM00382 ATPases associated with a variety of cellular activities RU53_RS06835 SM00421 helix_turn_helix, Lux Regulon RU53_RS06835 SM00448 cheY-homologous receiver domain RU53_RS06845 SM00318 Staphylococcal nuclease homologues RU53_RS06900 SM01060 RU53_RS06900 RU53_RS06915 SM01240 RU53_RS06915 RU53_RS06945 SM00861 Transketolase, pyrimidine binding domain RU53_RS07000 SM01207 RU53_RS07000 RU53_RS07005 SM00387 Histidine kinase-like ATPases RU53_RS07005 SM00433 TopoisomeraseII RU53_RS07010 SM00434 DNA Topoisomerase IV RU53_RS07025 SM01061 CAT RNA binding domain RU53_RS07130 SM00382 ATPases associated with a variety of cellular activities RU53_RS07135 SM00382 ATPases associated with a variety of cellular activities RU53_RS07195 SM00382 ATPases associated with a variety of cellular activities RU53_RS07200 SM00387 Histidine kinase-like ATPases RU53_RS07210 SM00448 cheY-homologous receiver domain RU53_RS07210 SM00862 Transcriptional regulatory protein, C terminal RU53_RS07220 SM00091 PAS domain RU53_RS07220 SM00382 ATPases associated with a variety of cellular activities RU53_RS07240 SM00857 Resolvase, N terminal domain RU53_RS07275 SM00382 ATPases associated with a variety of cellular activities RU53_RS07310 SM00382 ATPases associated with a variety of cellular activities RU53_RS07320 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU53_RS07325 SM01130 RU53_RS07325 RU53_RS07345 SM01005 Alanine racemase, C-terminal domain RU53_RS07360 SM00357 Cold shock protein domain RU53_RS07395 SM00327 von Willebrand factor (vWF) type A domain RU53_RS07420 SM00861 Transketolase, pyrimidine binding domain RU53_RS07425 SM00387 Histidine kinase-like ATPases RU53_RS07425 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS07430 SM00448 cheY-homologous receiver domain RU53_RS07430 SM00862 Transcriptional regulatory protein, C terminal RU53_RS07445 SM00014 Acid phosphatase homologues RU53_RS07465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU53_RS07465 SM00245 tail specific protease RU53_RS07515 SM00567 E-Z type HEAT repeats RU53_RS07515 SM00932 Scaffold protein Nfu/NifU N terminal RU53_RS07520 SM00932 Scaffold protein Nfu/NifU N terminal RU53_RS07550 SM00844 GA module RU53_RS07570 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RU53_RS07570 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RU53_RS07575 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RU53_RS07575 SM00475 5'-3' exonuclease RU53_RS07600 SM00981 RU53_RS07600 RU53_RS07640 SM00478 endonuclease III RU53_RS07640 SM00525 RU53_RS07640 RU53_RS07655 SM00479 RU53_RS07655 RU53_RS07655 SM00491 RU53_RS07655 RU53_RS07690 SM00914 RU53_RS07690 RU53_RS07695 SM00028 Tetratricopeptide repeats RU53_RS07720 SM00562 RU53_RS07720 RU53_RS07745 SM00411 bacterial (prokaryotic) histone like domain RU53_RS07760 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS07775 SM00870 RU53_RS07775 RU53_RS07790 SM00257 Lysin motif RU53_RS07795 SM00487 DEAD-like helicases superfamily RU53_RS07795 SM00490 helicase superfamily c-terminal domain RU53_RS07850 SM00287 Bacterial SH3 domain homologues RU53_RS07850 SM00646 RU53_RS07850 RU53_RS07970 SM00507 HNH nucleases RU53_RS08130 SM01040 BRO family, N-terminal domain RU53_RS08140 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS08180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU53_RS08180 SM00387 Histidine kinase-like ATPases RU53_RS08180 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS08185 SM00448 cheY-homologous receiver domain RU53_RS08185 SM00862 Transcriptional regulatory protein, C terminal RU53_RS08190 SM00363 S4 RNA-binding domain RU53_RS08255 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS08255 SM00871 Bacterial transcription activator, effector binding domain RU53_RS08260 SM00642 Alpha-amylase domain RU53_RS08265 SM00354 helix_turn _helix lactose operon repressor RU53_RS08290 SM01350 RU53_RS08290 RU53_RS08320 SM00861 Transketolase, pyrimidine binding domain RU53_RS08370 SM00878 Biotin carboxylase C-terminal domain RU53_RS08380 SM00841 Elongation factor P, C-terminal RU53_RS08380 SM01185 RU53_RS08380 RU53_RS08405 SM00450 Rhodanese Homology Domain RU53_RS08465 SM00849 Metallo-beta-lactamase superfamily RU53_RS08520 SM00382 ATPases associated with a variety of cellular activities RU53_RS08525 SM00518 AP endonuclease family 2 RU53_RS08530 SM00487 DEAD-like helicases superfamily RU53_RS08530 SM00490 helicase superfamily c-terminal domain RU53_RS08550 SM00400 zinc finger RU53_RS08550 SM00493 RU53_RS08550 RU53_RS08560 SM00116 Domain in cystathionine beta-synthase and other proteins. RU53_RS08620 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS08635 SM00271 DnaJ molecular chaperone homology domain RU53_RS08655 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS08660 SM00838 Elongation factor G C-terminus RU53_RS08675 SM00849 Metallo-beta-lactamase superfamily RU53_RS08685 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU53_RS08700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS08710 SM01103 RU53_RS08710 RU53_RS08765 SM00878 Biotin carboxylase C-terminal domain RU53_RS08775 SM00797 Allophanate hydrolase subunit 2 RU53_RS08780 SM00796 Allophanate hydrolase subunit 1 RU53_RS08815 SM00732 Likely ribonuclease with RNase H fold. RU53_RS08825 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU53_RS08830 SM00382 ATPases associated with a variety of cellular activities RU53_RS08835 SM00028 Tetratricopeptide repeats RU53_RS08875 SM00382 ATPases associated with a variety of cellular activities RU53_RS08900 SM00287 Bacterial SH3 domain homologues RU53_RS08900 SM00646 RU53_RS08900 RU53_RS08910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS08910 SM00954 Region found in RelA / SpoT proteins RU53_RS08930 SM01323 RU53_RS08930 RU53_RS08945 SM00382 ATPases associated with a variety of cellular activities RU53_RS08950 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU53_RS09050 SM01004 Delta-aminolevulinic acid dehydratase RU53_RS09080 SM00382 ATPases associated with a variety of cellular activities RU53_RS09080 SM00994 ClpX C4-type zinc finger RU53_RS09080 SM01086 C-terminal, D2-small domain, of ClpB protein RU53_RS09130 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU53_RS09155 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU53_RS09165 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RU53_RS09165 SM01232 RU53_RS09165 RU53_RS09170 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RU53_RS09170 SM00474 3'-5' exonuclease RU53_RS09170 SM00475 5'-3' exonuclease RU53_RS09170 SM00482 DNA polymerase A domain RU53_RS09180 SM00387 Histidine kinase-like ATPases RU53_RS09180 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS09185 SM00448 cheY-homologous receiver domain RU53_RS09185 SM00862 Transcriptional regulatory protein, C terminal RU53_RS09195 SM01329 RU53_RS09195 RU53_RS09235 SM00919 Malic enzyme, NAD binding domain RU53_RS09235 SM01274 RU53_RS09235 RU53_RS09240 SM00481 DNA polymerase alpha chain like domain RU53_RS09250 SM00116 Domain in cystathionine beta-synthase and other proteins. RU53_RS09260 SM00849 Metallo-beta-lactamase superfamily RU53_RS09275 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RU53_RS09275 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RU53_RS09305 SM00981 RU53_RS09305 RU53_RS09325 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RU53_RS09330 SM00363 S4 RNA-binding domain RU53_RS09330 SM01390 RU53_RS09330 RU53_RS09385 SM00563 Phosphate acyltransferases RU53_RS09390 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU53_RS09395 SM00363 S4 RNA-binding domain RU53_RS09410 SM00725 NEAr Transporter domain RU53_RS09440 SM00354 helix_turn _helix lactose operon repressor RU53_RS09450 SM00830 Chorismate mutase type II RU53_RS09480 SM00843 RU53_RS09480 RU53_RS09510 SM00849 Metallo-beta-lactamase superfamily RU53_RS09540 SM00363 S4 RNA-binding domain RU53_RS09560 SM00450 Rhodanese Homology Domain RU53_RS09575 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS09585 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS09640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU53_RS09650 SM00226 Low molecular weight phosphatase family RU53_RS09660 SM00047 Lysozyme subfamily 2 RU53_RS09740 SM01234 RU53_RS09740 RU53_RS09760 SM00894 Excalibur calcium-binding domain RU53_RS09975 SM00382 ATPases associated with a variety of cellular activities RU53_RS10000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS10030 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS10035 SM00421 helix_turn_helix, Lux Regulon RU53_RS10035 SM00448 cheY-homologous receiver domain RU53_RS10090 SM00382 ATPases associated with a variety of cellular activities RU53_RS10095 SM00062 Bacterial periplasmic substrate-binding proteins RU53_RS10285 SM00382 ATPases associated with a variety of cellular activities RU53_RS10295 SM00478 endonuclease III RU53_RS10365 SM00226 Low molecular weight phosphatase family RU53_RS10380 SM00421 helix_turn_helix, Lux Regulon RU53_RS10380 SM00448 cheY-homologous receiver domain RU53_RS10385 SM00387 Histidine kinase-like ATPases RU53_RS10445 SM00479 RU53_RS10445 RU53_RS10465 SM00046 Diacylglycerol kinase catalytic domain (presumed) RU53_RS10475 SM00845 GatB domain RU53_RS10500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU53_RS10500 SM00292 breast cancer carboxy-terminal domain RU53_RS10500 SM00532 Ligase N family RU53_RS10520 SM00998 Adenylosuccinate lyase C-terminus RU53_RS10575 SM00710 Parallel beta-helix repeats RU53_RS10585 SM01131 RU53_RS10585 RU53_RS10680 SM00382 ATPases associated with a variety of cellular activities RU53_RS10690 SM00382 ATPases associated with a variety of cellular activities RU53_RS10695 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS10780 SM00883 Chaperonin 10 Kd subunit RU53_RS10810 SM00793 Accessory gene regulator B RU53_RS10815 SM00794 Staphylococcal AgrD protein RU53_RS10825 SM00448 cheY-homologous receiver domain RU53_RS10825 SM00850 LytTr DNA-binding domain RU53_RS10840 SM00640 Glycosyl hydrolases family 32 RU53_RS10845 SM00354 helix_turn _helix lactose operon repressor RU53_RS10865 SM00881 CoA binding domain RU53_RS10870 SM00382 ATPases associated with a variety of cellular activities RU53_RS10880 SM00534 ATPase domain of DNA mismatch repair MUTS family RU53_RS10930 SM00917 LeuA allosteric (dimerisation) domain RU53_RS10935 SM01329 RU53_RS10935 RU53_RS10980 SM00731 SprT homologues. RU53_RS10985 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS10985 SM00732 Likely ribonuclease with RNase H fold. RU53_RS11005 SM00331 Sigma factor PP2C-like phosphatases RU53_RS11005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RU53_RS11025 SM01005 Alanine racemase, C-terminal domain RU53_RS11070 SM00387 Histidine kinase-like ATPases RU53_RS11070 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS11075 SM00448 cheY-homologous receiver domain RU53_RS11075 SM00862 Transcriptional regulatory protein, C terminal RU53_RS11080 SM00487 DEAD-like helicases superfamily RU53_RS11080 SM00490 helicase superfamily c-terminal domain RU53_RS11115 SM00155 Phospholipase D. Active site motifs. RU53_RS11120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU53_RS11195 SM00382 ATPases associated with a variety of cellular activities RU53_RS11255 SM00226 Low molecular weight phosphatase family RU53_RS11270 SM00937 RU53_RS11270 RU53_RS11285 SM00357 Cold shock protein domain RU53_RS11285 SM00382 ATPases associated with a variety of cellular activities RU53_RS11285 SM00959 Rho termination factor, N-terminal domain RU53_RS11360 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RU53_RS11370 SM01133 RU53_RS11370 RU53_RS11410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU53_RS11435 SM00382 ATPases associated with a variety of cellular activities RU53_RS11645 SM00829 Enoylreductase RU53_RS11650 SM00829 Enoylreductase RU53_RS11675 SM01133 RU53_RS11675 RU53_RS11695 SM00420 helix_turn_helix, Deoxyribose operon repressor RU53_RS11695 SM01134 RU53_RS11695 RU53_RS11725 SM00422 helix_turn_helix, mercury resistance RU53_RS11795 SM00382 ATPases associated with a variety of cellular activities RU53_RS11800 SM00382 ATPases associated with a variety of cellular activities RU53_RS11810 SM00662 RNA polymerases D RU53_RS11830 SM00316 Ribosomal protein S1-like RNA-binding domain RU53_RS11885 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU53_RS11890 SM01374 RU53_RS11890 RU53_RS11910 SM00322 K homology RNA-binding domain RU53_RS11925 SM01382 RU53_RS11925 RU53_RS11925 SM01383 RU53_RS11925 RU53_RS11945 SM01403 RU53_RS11945 RU53_RS11960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RU53_RS11960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RU53_RS11960 SM00493 RU53_RS11960 RU53_RS12020 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS12050 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS12075 SM00852 Probable molybdopterin binding domain RU53_RS12085 SM00852 Probable molybdopterin binding domain RU53_RS12095 SM00382 ATPases associated with a variety of cellular activities RU53_RS12160 SM00988 UreE urease accessory protein, N-terminal domain RU53_RS12200 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS12250 SM00047 Lysozyme subfamily 2 RU53_RS12265 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU53_RS12265 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RU53_RS12280 SM00420 helix_turn_helix, Deoxyribose operon repressor RU53_RS12430 SM00382 ATPases associated with a variety of cellular activities RU53_RS12515 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS12525 SM00382 ATPases associated with a variety of cellular activities RU53_RS12535 SM00448 cheY-homologous receiver domain RU53_RS12535 SM00862 Transcriptional regulatory protein, C terminal RU53_RS12540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU53_RS12540 SM00387 Histidine kinase-like ATPases RU53_RS12540 SM00388 His Kinase A (phosphoacceptor) domain RU53_RS12545 SM00850 LytTr DNA-binding domain RU53_RS12580 SM00829 Enoylreductase RU53_RS12650 SM00342 helix_turn_helix, arabinose operon control protein RU53_RS12680 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS12700 SM00422 helix_turn_helix, mercury resistance RU53_RS12705 SM00421 helix_turn_helix, Lux Regulon RU53_RS12705 SM00448 cheY-homologous receiver domain RU53_RS12710 SM00387 Histidine kinase-like ATPases RU53_RS12735 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU53_RS12815 SM00382 ATPases associated with a variety of cellular activities RU53_RS12825 SM00062 Bacterial periplasmic substrate-binding proteins RU53_RS12825 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RU53_RS12840 SM00855 Phosphoglycerate mutase family RU53_RS12895 SM00729 Elongator protein 3, MiaB family, Radical SAM RU53_RS12895 SM00876 Biotin and Thiamin Synthesis associated domain RU53_RS12920 SM00382 ATPases associated with a variety of cellular activities RU53_RS12925 SM00382 ATPases associated with a variety of cellular activities RU53_RS12960 SM00871 Bacterial transcription activator, effector binding domain RU53_RS13040 SM00116 Domain in cystathionine beta-synthase and other proteins. RU53_RS13040 SM00382 ATPases associated with a variety of cellular activities RU53_RS13080 SM00382 ATPases associated with a variety of cellular activities RU53_RS13125 SM00382 ATPases associated with a variety of cellular activities RU53_RS13130 SM00382 ATPases associated with a variety of cellular activities RU53_RS13255 SM00487 DEAD-like helicases superfamily RU53_RS13255 SM00490 helicase superfamily c-terminal domain RU53_RS13290 SM01208 RU53_RS13290 RU53_RS13340 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU53_RS13340 SM00895 RU53_RS13340 RU53_RS13345 SM00422 helix_turn_helix, mercury resistance RU53_RS13350 SM00954 Region found in RelA / SpoT proteins RU53_RS13380 SM00382 ATPases associated with a variety of cellular activities RU53_RS13415 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS13445 SM00382 ATPases associated with a variety of cellular activities RU53_RS13565 SM00382 ATPases associated with a variety of cellular activities RU53_RS13565 SM01086 C-terminal, D2-small domain, of ClpB protein RU53_RS13580 SM00899 RU53_RS13580 RU53_RS13605 SM01266 RU53_RS13605 RU53_RS13805 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RU53_RS13995 SM00382 ATPases associated with a variety of cellular activities RU53_RS14000 SM00387 Histidine kinase-like ATPases RU53_RS14005 SM00448 cheY-homologous receiver domain RU53_RS14005 SM00862 Transcriptional regulatory protein, C terminal RU53_RS14020 SM00098 Alkaline phosphatase homologues RU53_RS14025 SM00347 helix_turn_helix multiple antibiotic resistance protein RU53_RS14110 SM00047 Lysozyme subfamily 2 RU53_RS14135 SM00957 SecA DEAD-like domain RU53_RS14135 SM00958 SecA preprotein cross-linking domain RU53_RS14165 SM00903 Flavin reductase like domain RU53_RS14190 SM00903 Flavin reductase like domain RU53_RS14320 SM00382 ATPases associated with a variety of cellular activities RU53_RS14335 SM00867 YceI-like domain RU53_RS14345 SM00450 Rhodanese Homology Domain RU53_RS14395 SM00382 ATPases associated with a variety of cellular activities RU53_RS14430 SM00357 Cold shock protein domain RU53_RS14435 SM00530 Helix-turn-helix XRE-family like proteins RU53_RS14450 SM00470 ParB-like nuclease domain RU53_RS14460 SM01228 RU53_RS14460