A4G25_RS00015	SM00479	A4G25_RS00015
A4G25_RS00050	SM00387	Histidine kinase-like ATPases
A4G25_RS00055	SM00421	helix_turn_helix, Lux Regulon
A4G25_RS00055	SM00448	cheY-homologous receiver domain
A4G25_RS00060	SM00947	Carbonic anhydrase
A4G25_RS00075	SM00226	Low molecular weight phosphatase family
A4G25_RS00140	SM00478	endonuclease III
A4G25_RS00140	SM00525	A4G25_RS00140
A4G25_RS00150	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS00325	SM00062	Bacterial periplasmic substrate-binding proteins
A4G25_RS00325	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4G25_RS00330	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS00335	SM00567	E-Z type HEAT repeats
A4G25_RS00365	SM00387	Histidine kinase-like ATPases
A4G25_RS00370	SM00421	helix_turn_helix, Lux Regulon
A4G25_RS00370	SM00448	cheY-homologous receiver domain
A4G25_RS00380	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS00405	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS00430	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS00565	SM01234	A4G25_RS00565
A4G25_RS00645	SM00047	Lysozyme subfamily 2
A4G25_RS00695	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS00710	SM00450	Rhodanese Homology Domain
A4G25_RS00725	SM00363	S4 RNA-binding domain
A4G25_RS00755	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS00785	SM00843	A4G25_RS00785
A4G25_RS00805	SM00830	Chorismate mutase type II
A4G25_RS00810	SM00354	helix_turn _helix lactose operon repressor
A4G25_RS00840	SM00363	S4 RNA-binding domain
A4G25_RS00845	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4G25_RS00850	SM00563	Phosphate acyltransferases
A4G25_RS00885	SM00363	S4 RNA-binding domain
A4G25_RS00885	SM01390	A4G25_RS00885
A4G25_RS00905	SM00981	A4G25_RS00905
A4G25_RS00935	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A4G25_RS00935	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A4G25_RS00945	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS00955	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4G25_RS00965	SM00481	DNA polymerase alpha chain like domain
A4G25_RS00970	SM00919	Malic enzyme, NAD binding domain
A4G25_RS00970	SM01274	A4G25_RS00970
A4G25_RS01005	SM01329	A4G25_RS01005
A4G25_RS01010	SM00448	cheY-homologous receiver domain
A4G25_RS01010	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS01015	SM00387	Histidine kinase-like ATPases
A4G25_RS01015	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS01020	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A4G25_RS01020	SM00474	3'-5' exonuclease
A4G25_RS01020	SM00475	5'-3' exonuclease
A4G25_RS01020	SM00482	DNA polymerase A domain
A4G25_RS01025	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A4G25_RS01025	SM01232	A4G25_RS01025
A4G25_RS01035	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A4G25_RS01055	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4G25_RS01095	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS01095	SM00994	ClpX C4-type zinc finger
A4G25_RS01095	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS01125	SM01004	Delta-aminolevulinic acid dehydratase
A4G25_RS01205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4G25_RS01210	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS01225	SM01323	A4G25_RS01225
A4G25_RS01245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS01245	SM00954	Region found in RelA / SpoT proteins
A4G25_RS01255	SM00646	A4G25_RS01255
A4G25_RS01280	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS01310	SM00028	Tetratricopeptide repeats
A4G25_RS01315	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS01320	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4G25_RS01330	SM00732	Likely ribonuclease with RNase H fold.
A4G25_RS01385	SM01103	A4G25_RS01385
A4G25_RS01395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS01410	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4G25_RS01420	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS01435	SM00838	Elongation factor G C-terminus
A4G25_RS01440	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS01460	SM00271	DnaJ molecular chaperone homology domain
A4G25_RS01475	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS01535	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4G25_RS01545	SM00400	zinc finger
A4G25_RS01545	SM00493	A4G25_RS01545
A4G25_RS01565	SM00487	DEAD-like helicases superfamily
A4G25_RS01565	SM00490	helicase superfamily c-terminal domain
A4G25_RS01570	SM00518	AP endonuclease family 2
A4G25_RS01575	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS01630	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS01685	SM00450	Rhodanese Homology Domain
A4G25_RS01710	SM00841	Elongation factor P, C-terminal
A4G25_RS01710	SM01185	A4G25_RS01710
A4G25_RS01720	SM00878	Biotin carboxylase C-terminal domain
A4G25_RS01780	SM00861	Transketolase, pyrimidine binding domain
A4G25_RS01805	SM01350	A4G25_RS01805
A4G25_RS01810	SM00342	helix_turn_helix, arabinose operon control protein
A4G25_RS01810	SM00871	Bacterial transcription activator, effector binding domain
A4G25_RS01875	SM00363	S4 RNA-binding domain
A4G25_RS01880	SM00448	cheY-homologous receiver domain
A4G25_RS01880	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS01885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4G25_RS01885	SM00387	Histidine kinase-like ATPases
A4G25_RS01885	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS01905	SM00487	DEAD-like helicases superfamily
A4G25_RS01905	SM00490	helicase superfamily c-terminal domain
A4G25_RS01910	SM00257	Lysin motif
A4G25_RS01920	SM00870	A4G25_RS01920
A4G25_RS01930	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS01945	SM00411	bacterial (prokaryotic) histone like domain
A4G25_RS01965	SM00562	A4G25_RS01965
A4G25_RS01985	SM00028	Tetratricopeptide repeats
A4G25_RS02025	SM00479	A4G25_RS02025
A4G25_RS02025	SM00491	A4G25_RS02025
A4G25_RS02040	SM00478	endonuclease III
A4G25_RS02080	SM00981	A4G25_RS02080
A4G25_RS02095	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A4G25_RS02095	SM00475	5'-3' exonuclease
A4G25_RS02110	SM00567	E-Z type HEAT repeats
A4G25_RS02110	SM00932	Scaffold protein Nfu/NifU N terminal
A4G25_RS02155	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4G25_RS02155	SM00245	tail specific protease
A4G25_RS02170	SM00014	Acid phosphatase homologues
A4G25_RS02180	SM00448	cheY-homologous receiver domain
A4G25_RS02180	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS02185	SM00387	Histidine kinase-like ATPases
A4G25_RS02185	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS02190	SM00861	Transketolase, pyrimidine binding domain
A4G25_RS02215	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02220	SM00327	von Willebrand factor (vWF) type A domain
A4G25_RS02230	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A4G25_RS02255	SM00357	Cold shock protein domain
A4G25_RS02265	SM01005	Alanine racemase, C-terminal domain
A4G25_RS02285	SM01130	A4G25_RS02285
A4G25_RS02290	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4G25_RS02300	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02325	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02360	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02365	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02480	SM01061	CAT RNA binding domain
A4G25_RS02490	SM00434	DNA Topoisomerase IV
A4G25_RS02495	SM00387	Histidine kinase-like ATPases
A4G25_RS02495	SM00433	TopoisomeraseII
A4G25_RS02500	SM01207	A4G25_RS02500
A4G25_RS02550	SM00861	Transketolase, pyrimidine binding domain
A4G25_RS02575	SM01240	A4G25_RS02575
A4G25_RS02630	SM01134	A4G25_RS02630
A4G25_RS02650	SM00318	Staphylococcal nuclease homologues
A4G25_RS02660	SM00155	Phospholipase D. Active site motifs.
A4G25_RS02670	SM00422	helix_turn_helix, mercury resistance
A4G25_RS02675	SM01230	A4G25_RS02675
A4G25_RS02735	SM00853	MutL C terminal dimerisation domain
A4G25_RS02735	SM01340	A4G25_RS02735
A4G25_RS02740	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4G25_RS02740	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4G25_RS02760	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS02805	SM00322	K homology RNA-binding domain
A4G25_RS02805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS02810	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02815	SM00852	Probable molybdopterin binding domain
A4G25_RS02850	SM00866	A4G25_RS02850
A4G25_RS02855	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02855	SM00843	A4G25_RS02855
A4G25_RS02860	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS02865	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS02865	SM00322	K homology RNA-binding domain
A4G25_RS02870	SM01387	A4G25_RS02870
A4G25_RS02875	SM00904	Riboflavin kinase
A4G25_RS02920	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS02920	SM00322	K homology RNA-binding domain
A4G25_RS02930	SM00479	A4G25_RS02930
A4G25_RS02930	SM00481	DNA polymerase alpha chain like domain
A4G25_RS02985	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS02985	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS03005	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A4G25_RS03005	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A4G25_RS03005	SM00493	A4G25_RS03005
A4G25_RS03010	SM00881	CoA binding domain
A4G25_RS03085	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS03085	SM00962	SRP54-type protein, GTPase domain
A4G25_RS03085	SM00963	SRP54-type protein, helical bundle domain
A4G25_RS03095	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS03095	SM00962	SRP54-type protein, GTPase domain
A4G25_RS03095	SM00963	SRP54-type protein, helical bundle domain
A4G25_RS03100	SM00968	SMC proteins Flexible Hinge Domain
A4G25_RS03105	SM00358	Double-stranded RNA binding motif
A4G25_RS03105	SM00535	Ribonuclease III family
A4G25_RS03115	SM00822	A4G25_RS03115
A4G25_RS03120	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A4G25_RS03135	SM00487	DEAD-like helicases superfamily
A4G25_RS03135	SM00490	helicase superfamily c-terminal domain
A4G25_RS03150	SM01120	A4G25_RS03150
A4G25_RS03150	SM01121	A4G25_RS03150
A4G25_RS03170	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A4G25_RS03185	SM00220	Serine/Threonine protein kinases, catalytic domain
A4G25_RS03185	SM00740	A4G25_RS03185
A4G25_RS03190	SM00331	Sigma factor PP2C-like phosphatases
A4G25_RS03190	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A4G25_RS03235	SM00487	DEAD-like helicases superfamily
A4G25_RS03235	SM00490	helicase superfamily c-terminal domain
A4G25_RS03250	SM01409	A4G25_RS03250
A4G25_RS03255	SM00072	Guanylate kinase homologues.
A4G25_RS03285	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4G25_RS03300	SM00851	MGS-like domain
A4G25_RS03300	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A4G25_RS03300	SM01209	A4G25_RS03300
A4G25_RS03305	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A4G25_RS03330	SM00487	DEAD-like helicases superfamily
A4G25_RS03345	SM00363	S4 RNA-binding domain
A4G25_RS03375	SM00363	S4 RNA-binding domain
A4G25_RS03400	SM00864	Tubulin/FtsZ family, GTPase domain
A4G25_RS03400	SM00865	Tubulin/FtsZ family, C-terminal domain
A4G25_RS03405	SM00842	Cell division protein FtsA
A4G25_RS03425	SM00740	A4G25_RS03425
A4G25_RS03485	SM00287	Bacterial SH3 domain homologues
A4G25_RS03485	SM00644	A4G25_RS03485
A4G25_RS03515	SM00710	Parallel beta-helix repeats
A4G25_RS03610	SM00507	HNH nucleases
A4G25_RS03640	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS03775	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS03800	SM00910	A4G25_RS03800
A4G25_RS03870	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS03895	SM00465	GIY-YIG type nucleases (URI domain)
A4G25_RS03905	SM00463	Small MutS-related domain
A4G25_RS03905	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4G25_RS03905	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4G25_RS03910	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4G25_RS03910	SM00481	DNA polymerase alpha chain like domain
A4G25_RS03910	SM00483	DNA polymerase X family
A4G25_RS03930	SM00873	B3/4 domain
A4G25_RS03930	SM00874	tRNA synthetase B5 domain
A4G25_RS03930	SM00896	Ferredoxin-fold anticodon binding domain
A4G25_RS03940	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A4G25_RS04015	SM00878	Biotin carboxylase C-terminal domain
A4G25_RS04040	SM00838	Elongation factor G C-terminus
A4G25_RS04090	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS04095	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS04115	SM00861	Transketolase, pyrimidine binding domain
A4G25_RS04145	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS04200	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS04215	SM01209	A4G25_RS04215
A4G25_RS04215	SM01210	A4G25_RS04215
A4G25_RS04220	SM00798	AICARFT/IMPCHase bienzyme
A4G25_RS04220	SM00851	MGS-like domain
A4G25_RS04245	SM01211	A4G25_RS04245
A4G25_RS04265	SM01001	AIR carboxylase
A4G25_RS04320	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4G25_RS04320	SM01134	A4G25_RS04320
A4G25_RS04350	SM00226	Low molecular weight phosphatase family
A4G25_RS04365	SM00287	Bacterial SH3 domain homologues
A4G25_RS04365	SM00644	A4G25_RS04365
A4G25_RS04405	SM00047	Lysozyme subfamily 2
A4G25_RS04485	SM00959	Rho termination factor, N-terminal domain
A4G25_RS04635	SM00047	Lysozyme subfamily 2
A4G25_RS04635	SM00644	A4G25_RS04635
A4G25_RS04640	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS04655	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS04715	SM00914	A4G25_RS04715
A4G25_RS04810	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4G25_RS04880	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4G25_RS04880	SM00924	MgtE intracellular N domain
A4G25_RS04895	SM00954	Region found in RelA / SpoT proteins
A4G25_RS04905	SM01118	A4G25_RS04905
A4G25_RS04965	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS04970	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS04995	SM00825	Beta-ketoacyl synthase
A4G25_RS05010	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05010	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS05090	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A4G25_RS05120	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS05140	SM01298	A4G25_RS05140
A4G25_RS05235	SM00422	helix_turn_helix, mercury resistance
A4G25_RS05300	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS05335	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05370	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05385	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05385	SM00930	A4G25_RS05385
A4G25_RS05395	SM00493	A4G25_RS05395
A4G25_RS05475	SM00357	Cold shock protein domain
A4G25_RS05490	SM00903	Flavin reductase like domain
A4G25_RS05505	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS05505	SM00357	Cold shock protein domain
A4G25_RS05505	SM00955	A4G25_RS05505
A4G25_RS05525	SM01192	A4G25_RS05525
A4G25_RS05525	SM01193	A4G25_RS05525
A4G25_RS05545	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A4G25_RS05615	SM00028	Tetratricopeptide repeats
A4G25_RS05640	SM00487	DEAD-like helicases superfamily
A4G25_RS05640	SM00490	helicase superfamily c-terminal domain
A4G25_RS05655	SM00257	Lysin motif
A4G25_RS05660	SM00937	A4G25_RS05660
A4G25_RS05665	SM00957	SecA DEAD-like domain
A4G25_RS05665	SM00958	SecA preprotein cross-linking domain
A4G25_RS05680	SM00487	DEAD-like helicases superfamily
A4G25_RS05680	SM00490	helicase superfamily c-terminal domain
A4G25_RS05700	SM00267	diguanylate cyclase
A4G25_RS05760	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05830	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05835	SM00341	Helicase and RNase D C-terminal
A4G25_RS05835	SM00487	DEAD-like helicases superfamily
A4G25_RS05835	SM00490	helicase superfamily c-terminal domain
A4G25_RS05835	SM00956	A4G25_RS05835
A4G25_RS05840	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS05850	SM00797	Allophanate hydrolase subunit 2
A4G25_RS05855	SM00796	Allophanate hydrolase subunit 1
A4G25_RS05915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4G25_RS05915	SM00387	Histidine kinase-like ATPases
A4G25_RS05915	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS05920	SM00448	cheY-homologous receiver domain
A4G25_RS05920	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS05935	SM01091	Transporter associated domain
A4G25_RS05950	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4G25_RS05950	SM01134	A4G25_RS05950
A4G25_RS06015	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A4G25_RS06020	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS06025	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06030	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06110	SM00342	helix_turn_helix, arabinose operon control protein
A4G25_RS06120	SM00257	Lysin motif
A4G25_RS06155	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06200	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06215	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06245	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06285	SM01266	A4G25_RS06285
A4G25_RS06300	SM00529	Helix-turn-helix diphteria tox regulatory element
A4G25_RS06305	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06385	SM00836	DALR anticodon binding domain
A4G25_RS06385	SM01016	Arginyl tRNA synthetase N terminal dom
A4G25_RS06425	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS06515	SM00986	Uracil DNA glycosylase superfamily
A4G25_RS06515	SM00987	UreE urease accessory protein, C-terminal domain 
A4G25_RS06550	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4G25_RS06645	SM00838	Elongation factor G C-terminus
A4G25_RS06645	SM00889	Elongation factor G, domain IV
A4G25_RS06670	SM00663	RNA polymerase I subunit A N-terminus
A4G25_RS06700	SM00649	Ribosomal protein L11/L12
A4G25_RS06705	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A4G25_RS06705	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4G25_RS06725	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A4G25_RS06730	SM00535	Ribonuclease III family
A4G25_RS06735	SM00840	A4G25_RS06735
A4G25_RS06750	SM00670	Large family of predicted nucleotide-binding domains
A4G25_RS06755	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06760	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06760	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS06785	SM01022	A4G25_RS06785
A4G25_RS06805	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS06915	SM00905	Dihydroneopterin aldolase
A4G25_RS06935	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS06945	SM00977	TilS substrate C-terminal domain
A4G25_RS06950	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS06960	SM00363	S4 RNA-binding domain
A4G25_RS06975	SM00487	DEAD-like helicases superfamily
A4G25_RS06975	SM00490	helicase superfamily c-terminal domain
A4G25_RS06975	SM00982	A4G25_RS06975
A4G25_RS06975	SM01058	CarD-like/TRCF domain
A4G25_RS06990	SM01400	A4G25_RS06990
A4G25_RS07025	SM00650	Ribosomal RNA adenine dimethylases
A4G25_RS07030	SM00493	A4G25_RS07030
A4G25_RS07075	SM00465	GIY-YIG type nucleases (URI domain)
A4G25_RS07130	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4G25_RS07130	SM00493	A4G25_RS07130
A4G25_RS07140	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS07175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4G25_RS07180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS07180	SM00866	A4G25_RS07180
A4G25_RS07185	SM00642	Alpha-amylase domain
A4G25_RS07260	SM00257	Lysin motif
A4G25_RS07410	SM00822	A4G25_RS07410
A4G25_RS07470	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS07515	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS07530	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4G25_RS07530	SM01240	A4G25_RS07530
A4G25_RS07595	SM00014	Acid phosphatase homologues
A4G25_RS07615	SM00855	Phosphoglycerate mutase family
A4G25_RS07635	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS07650	SM00725	NEAr Transporter domain
A4G25_RS07655	SM00725	NEAr Transporter domain
A4G25_RS07660	SM00725	NEAr Transporter domain
A4G25_RS07665	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS07700	SM00318	Staphylococcal nuclease homologues
A4G25_RS07700	SM00894	Excalibur calcium-binding domain
A4G25_RS07725	SM01276	A4G25_RS07725
A4G25_RS07750	SM00470	ParB-like nuclease domain
A4G25_RS07790	SM00470	ParB-like nuclease domain
A4G25_RS07800	SM01228	A4G25_RS07800
A4G25_RS07820	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS07820	SM00760	Bacterial dnaA protein helix-turn-helix domain
A4G25_RS07825	SM00480	DNA polymerase III beta subunit
A4G25_RS07840	SM00387	Histidine kinase-like ATPases
A4G25_RS07840	SM00433	TopoisomeraseII
A4G25_RS07845	SM00434	DNA Topoisomerase IV
A4G25_RS07885	SM00267	diguanylate cyclase
A4G25_RS07900	SM00788	Adenylosuccinate synthetase
A4G25_RS07920	SM00448	cheY-homologous receiver domain
A4G25_RS07920	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS07925	SM00091	PAS domain
A4G25_RS07925	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4G25_RS07925	SM00387	Histidine kinase-like ATPases
A4G25_RS07925	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS07940	SM00849	Metallo-beta-lactamase superfamily
A4G25_RS08000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4G25_RS08025	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS08030	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS08045	SM00047	Lysozyme subfamily 2
A4G25_RS08055	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS08065	SM00854	Bacterial capsule synthesis protein PGA_cap
A4G25_RS08110	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS08150	SM00354	helix_turn _helix lactose operon repressor
A4G25_RS08195	SM00882	Coenzyme A transferase
A4G25_RS08220	SM00855	Phosphoglycerate mutase family
A4G25_RS08285	SM01130	A4G25_RS08285
A4G25_RS08320	SM00422	helix_turn_helix, mercury resistance
A4G25_RS08365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS08390	SM00448	cheY-homologous receiver domain
A4G25_RS08390	SM01012	A4G25_RS08390
A4G25_RS08405	SM01230	A4G25_RS08405
A4G25_RS08460	SM01217	A4G25_RS08460
A4G25_RS08465	SM00829	Enoylreductase
A4G25_RS08490	SM01060	A4G25_RS08490
A4G25_RS08495	SM00829	Enoylreductase
A4G25_RS08505	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS08505	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS08525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4G25_RS08650	SM00450	Rhodanese Homology Domain
A4G25_RS08665	SM00465	GIY-YIG type nucleases (URI domain)
A4G25_RS08810	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS08820	SM00829	Enoylreductase
A4G25_RS08955	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS09135	SM01060	A4G25_RS09135
A4G25_RS09195	SM00957	SecA DEAD-like domain
A4G25_RS09195	SM00958	SecA preprotein cross-linking domain
A4G25_RS09210	SM00478	endonuclease III
A4G25_RS09210	SM01009	AlkA N-terminal domain
A4G25_RS09230	SM01208	A4G25_RS09230
A4G25_RS09250	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS09250	SM00930	A4G25_RS09250
A4G25_RS09275	SM00342	helix_turn_helix, arabinose operon control protein
A4G25_RS09360	SM00450	Rhodanese Homology Domain
A4G25_RS09375	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS09475	SM00487	DEAD-like helicases superfamily
A4G25_RS09475	SM00490	helicase superfamily c-terminal domain
A4G25_RS09495	SM00834	Putative regulatory protein
A4G25_RS09620	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS09645	SM01120	A4G25_RS09645
A4G25_RS09735	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS09895	SM00422	helix_turn_helix, mercury resistance
A4G25_RS09925	SM00796	Allophanate hydrolase subunit 1
A4G25_RS09930	SM00797	Allophanate hydrolase subunit 2
A4G25_RS09940	SM00878	Biotin carboxylase C-terminal domain
A4G25_RS09990	SM00899	A4G25_RS09990
A4G25_RS10025	SM00850	LytTr DNA-binding domain
A4G25_RS10060	SM00829	Enoylreductase
A4G25_RS10065	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A4G25_RS10115	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS10115	SM00876	Biotin and Thiamin Synthesis associated domain
A4G25_RS10170	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10235	SM00354	helix_turn _helix lactose operon repressor
A4G25_RS10280	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10285	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10300	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS10315	SM00342	helix_turn_helix, arabinose operon control protein
A4G25_RS10320	SM01038	Beta galactosidase small chain
A4G25_RS10330	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10370	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A4G25_RS10375	SM00954	Region found in RelA / SpoT proteins
A4G25_RS10380	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10380	SM01086	C-terminal, D2-small domain, of ClpB protein
A4G25_RS10395	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS10395	SM00895	A4G25_RS10395
A4G25_RS10445	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10475	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4G25_RS10475	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10525	SM00448	cheY-homologous receiver domain
A4G25_RS10525	SM00850	LytTr DNA-binding domain
A4G25_RS10530	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A4G25_RS10530	SM00387	Histidine kinase-like ATPases
A4G25_RS10585	SM00855	Phosphoglycerate mutase family
A4G25_RS10590	SM00062	Bacterial periplasmic substrate-binding proteins
A4G25_RS10590	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4G25_RS10600	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10625	SM00867	YceI-like domain 
A4G25_RS10670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A4G25_RS10695	SM00387	Histidine kinase-like ATPases
A4G25_RS10700	SM00421	helix_turn_helix, Lux Regulon
A4G25_RS10700	SM00448	cheY-homologous receiver domain
A4G25_RS10730	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS10765	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS10785	SM00829	Enoylreductase
A4G25_RS10815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4G25_RS10815	SM00387	Histidine kinase-like ATPases
A4G25_RS10815	SM00388	His Kinase A (phosphoacceptor) domain
A4G25_RS10820	SM00448	cheY-homologous receiver domain
A4G25_RS10820	SM00862	Transcriptional regulatory protein, C terminal
A4G25_RS10830	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS10840	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS10935	SM00530	Helix-turn-helix XRE-family like proteins 
A4G25_RS10945	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS11015	SM00903	Flavin reductase like domain
A4G25_RS11095	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4G25_RS11115	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A4G25_RS11115	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A4G25_RS11130	SM00047	Lysozyme subfamily 2
A4G25_RS11210	SM00988	UreE urease accessory protein, N-terminal domain
A4G25_RS11265	SM00354	helix_turn _helix lactose operon repressor
A4G25_RS11295	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS11305	SM00852	Probable molybdopterin binding domain
A4G25_RS11315	SM00852	Probable molybdopterin binding domain
A4G25_RS11340	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4G25_RS11360	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS11420	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A4G25_RS11420	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A4G25_RS11420	SM00493	A4G25_RS11420
A4G25_RS11440	SM01403	A4G25_RS11440
A4G25_RS11460	SM01382	A4G25_RS11460
A4G25_RS11460	SM01383	A4G25_RS11460
A4G25_RS11475	SM00322	K homology RNA-binding domain
A4G25_RS11495	SM01374	A4G25_RS11495
A4G25_RS11500	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4G25_RS11555	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS11575	SM00662	RNA polymerases D
A4G25_RS11585	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS11590	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS11615	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4G25_RS11630	SM00344	helix_turn_helix ASNC type
A4G25_RS11665	SM00829	Enoylreductase
A4G25_RS11675	SM00829	Enoylreductase
A4G25_RS11680	SM00829	Enoylreductase
A4G25_RS11905	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4G25_RS11920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS11920	SM00895	A4G25_RS11920
A4G25_RS11965	SM01133	A4G25_RS11965
A4G25_RS12045	SM00357	Cold shock protein domain
A4G25_RS12045	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12045	SM00959	Rho termination factor, N-terminal domain
A4G25_RS12060	SM00937	A4G25_RS12060
A4G25_RS12075	SM00226	Low molecular weight phosphatase family
A4G25_RS12135	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12220	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4G25_RS12265	SM00487	DEAD-like helicases superfamily
A4G25_RS12265	SM00490	helicase superfamily c-terminal domain
A4G25_RS12290	SM01005	Alanine racemase, C-terminal domain
A4G25_RS12310	SM00331	Sigma factor PP2C-like phosphatases
A4G25_RS12310	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A4G25_RS12330	SM00316	Ribosomal protein S1-like RNA-binding domain
A4G25_RS12330	SM00732	Likely ribonuclease with RNase H fold.
A4G25_RS12335	SM00731	SprT homologues.
A4G25_RS12375	SM01329	A4G25_RS12375
A4G25_RS12380	SM00917	LeuA allosteric (dimerisation) domain
A4G25_RS12425	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12430	SM00881	CoA binding domain
A4G25_RS12445	SM00640	Glycosyl hydrolases family 32
A4G25_RS12450	SM00448	cheY-homologous receiver domain
A4G25_RS12450	SM00850	LytTr DNA-binding domain
A4G25_RS12460	SM00794	Staphylococcal AgrD protein
A4G25_RS12465	SM00793	Accessory gene regulator B
A4G25_RS12490	SM00883	Chaperonin 10 Kd subunit
A4G25_RS12530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4G25_RS12535	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12545	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12600	SM00710	Parallel beta-helix repeats
A4G25_RS12610	SM01131	A4G25_RS12610
A4G25_RS12620	SM00382	ATPases associated with a variety of cellular activities
A4G25_RS12650	SM00998	Adenylosuccinate lyase C-terminus
A4G25_RS12670	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4G25_RS12670	SM00292	breast cancer carboxy-terminal domain
A4G25_RS12670	SM00532	Ligase N family
A4G25_RS12700	SM00845	GatB domain
A4G25_RS12705	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A4G25_RS12725	SM00479	A4G25_RS12725
A4G25_RS12760	SM00387	Histidine kinase-like ATPases
A4G25_RS12765	SM00421	helix_turn_helix, Lux Regulon
A4G25_RS12765	SM00448	cheY-homologous receiver domain
