locus-tag class description CFE88_RS00020 PF00107 Zinc-binding dehydrogenase CFE88_RS00020 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS00025 PF00583 Acetyltransferase (GNAT) family CFE88_RS00030 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS00030 PF00535 Glycosyl transferase family 2 CFE88_RS00040 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS00040 PF00535 Glycosyl transferase family 2 CFE88_RS00045 PF02652 L-lactate permease CFE88_RS00050 PF00534 Glycosyl transferases group 1 CFE88_RS00050 PF13439 Glycosyltransferase Family 4 CFE88_RS00055 PF06039 Malate:quinone oxidoreductase (Mqo) CFE88_RS00060 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS00060 PF00672 HAMP domain CFE88_RS00065 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS00065 PF00072 Response regulator receiver domain CFE88_RS00070 PF02687 FtsX-like permease family CFE88_RS00075 PF00005 ABC transporter CFE88_RS00085 PF12802 MarR family CFE88_RS00090 PF13240 zinc-ribbon domain CFE88_RS00095 PF07690 Major Facilitator Superfamily CFE88_RS00110 PF07690 Major Facilitator Superfamily CFE88_RS00125 PF00934 PE family CFE88_RS00125 PF07859 alpha/beta hydrolase fold CFE88_RS00145 PF01070 FMN-dependent dehydrogenase CFE88_RS00150 PF03616 Sodium/glutamate symporter CFE88_RS00170 PF02245 Methylpurine-DNA glycosylase (MPG) CFE88_RS00180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFE88_RS00180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFE88_RS00185 PF01263 Aldose 1-epimerase CFE88_RS00190 PF03473 MOSC domain CFE88_RS00190 PF03475 3-alpha domain CFE88_RS00195 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CFE88_RS00205 PF02517 CPBP intramembrane metalloprotease CFE88_RS00210 PF00491 Arginase family CFE88_RS00215 PF01546 Peptidase family M20/M25/M40 CFE88_RS00215 PF07687 Peptidase dimerisation domain CFE88_RS00225 PF01613 Flavin reductase like domain CFE88_RS00245 PF01380 SIS domain CFE88_RS00245 PF01418 Helix-turn-helix domain, rpiR family CFE88_RS00250 PF00367 phosphotransferase system, EIIB CFE88_RS00250 PF02378 Phosphotransferase system, EIIC CFE88_RS00260 PF13419 Haloacid dehalogenase-like hydrolase CFE88_RS00280 PF00324 Amino acid permease CFE88_RS00290 PF00367 phosphotransferase system, EIIB CFE88_RS00290 PF02378 Phosphotransferase system, EIIC CFE88_RS00295 PF01380 SIS domain CFE88_RS00310 PF02517 CPBP intramembrane metalloprotease CFE88_RS00320 PF00459 Inositol monophosphatase family CFE88_RS00325 PF03816 Cell envelope-related transcriptional attenuator domain CFE88_RS00330 PF01568 Molydopterin dinucleotide binding domain CFE88_RS00330 PF00384 Molybdopterin oxidoreductase CFE88_RS00330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CFE88_RS00330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFE88_RS00330 PF12838 4Fe-4S dicluster domain CFE88_RS00345 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFE88_RS00345 PF13457 GW (Gly-Tryp) dipeptide domain CFE88_RS00350 PF01494 FAD binding domain CFE88_RS00355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS00355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS00360 PF00893 Small Multidrug Resistance protein CFE88_RS00365 PF00893 Small Multidrug Resistance protein CFE88_RS00370 PF05257 CHAP domain CFE88_RS00380 PF02558 Ketopantoate reductase PanE/ApbA CFE88_RS00380 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CFE88_RS00385 PF03553 Na+/H+ antiporter family CFE88_RS00390 PF05257 CHAP domain CFE88_RS00415 PF01774 UreD urease accessory protein CFE88_RS00420 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS00425 PF01730 UreF CFE88_RS00430 PF05194 UreE urease accessory protein, C-terminal domain CFE88_RS00430 PF02814 UreE urease accessory protein, N-terminal domain CFE88_RS00435 PF01979 Amidohydrolase family CFE88_RS00435 PF00449 Urease alpha-subunit, N-terminal domain CFE88_RS00440 PF00699 Urease beta subunit CFE88_RS00445 PF00547 Urease, gamma subunit CFE88_RS00455 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CFE88_RS00455 PF02770 Acyl-CoA dehydrogenase, middle domain CFE88_RS00455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CFE88_RS00460 PF01156 Inosine-uridine preferring nucleoside hydrolase CFE88_RS00465 PF02632 BioY family CFE88_RS00475 PF02634 FdhD/NarQ family CFE88_RS00485 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS00490 PF03459 TOBE domain CFE88_RS00490 PF00005 ABC transporter CFE88_RS00495 PF00899 ThiF family CFE88_RS00500 PF00994 Probable molybdopterin binding domain CFE88_RS00505 PF01967 MoaC family CFE88_RS00510 PF03453 MoeA N-terminal region (domain I and II) CFE88_RS00510 PF03454 MoeA C-terminal region (domain IV) CFE88_RS00510 PF00994 Probable molybdopterin binding domain CFE88_RS00520 PF02391 MoaE protein CFE88_RS00525 PF02597 ThiS family CFE88_RS00530 PF12804 MobA-like NTP transferase domain CFE88_RS00535 PF04055 Radical SAM superfamily CFE88_RS00535 PF06463 Molybdenum Cofactor Synthesis C CFE88_RS00540 PF01047 MarR family CFE88_RS00545 PF00083 Sugar (and other) transporter CFE88_RS00545 PF07690 Major Facilitator Superfamily CFE88_RS00550 PF01047 MarR family CFE88_RS00560 PF02388 FemAB family CFE88_RS00565 PF00873 AcrB/AcrD/AcrF family CFE88_RS00590 PF06800 Sugar transport protein CFE88_RS00595 PF01131 DNA topoisomerase CFE88_RS00595 PF01751 Toprim domain CFE88_RS00600 PF00860 Permease family CFE88_RS00610 PF00338 Ribosomal protein S10p/S20e CFE88_RS00615 PF00297 Ribosomal protein L3 CFE88_RS00620 PF00573 Ribosomal protein L4/L1 family CFE88_RS00625 PF00276 Ribosomal protein L23 CFE88_RS00630 PF03947 Ribosomal Proteins L2, C-terminal domain CFE88_RS00630 PF00181 Ribosomal Proteins L2, RNA binding domain CFE88_RS00635 PF00203 Ribosomal protein S19 CFE88_RS00640 PF00237 Ribosomal protein L22p/L17e CFE88_RS00645 PF00189 Ribosomal protein S3, C-terminal domain CFE88_RS00645 PF07650 KH domain CFE88_RS00650 PF00252 Ribosomal protein L16p/L10e CFE88_RS00655 PF00831 Ribosomal L29 protein CFE88_RS00660 PF00366 Ribosomal protein S17 CFE88_RS00665 PF00238 Ribosomal protein L14p/L23e CFE88_RS00670 PF00467 KOW motif CFE88_RS00670 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CFE88_RS00675 PF00281 Ribosomal protein L5 CFE88_RS00675 PF00673 ribosomal L5P family C-terminus CFE88_RS00680 PF00253 Ribosomal protein S14p/S29e CFE88_RS00685 PF00410 Ribosomal protein S8 CFE88_RS00690 PF00347 Ribosomal protein L6 CFE88_RS00695 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CFE88_RS00700 PF03719 Ribosomal protein S5, C-terminal domain CFE88_RS00700 PF00333 Ribosomal protein S5, N-terminal domain CFE88_RS00705 PF00327 Ribosomal protein L30p/L7e CFE88_RS00710 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CFE88_RS00715 PF00344 SecY translocase CFE88_RS00720 PF05191 Adenylate kinase, active site lid CFE88_RS00725 PF01176 Translation initiation factor 1A / IF-1 CFE88_RS00730 PF00444 Ribosomal protein L36 CFE88_RS00735 PF00416 Ribosomal protein S13/S18 CFE88_RS00740 PF00411 Ribosomal protein S11 CFE88_RS00745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CFE88_RS00745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CFE88_RS00745 PF01000 RNA polymerase Rpb3/RpoA insert domain CFE88_RS00750 PF01196 Ribosomal protein L17 CFE88_RS00755 PF00005 ABC transporter CFE88_RS00760 PF00005 ABC transporter CFE88_RS00765 PF02361 Cobalt transport protein CFE88_RS00770 PF01416 tRNA pseudouridine synthase CFE88_RS00775 PF00572 Ribosomal protein L13 CFE88_RS00780 PF00380 Ribosomal protein S9/S16 CFE88_RS00785 PF02146 Sir2 family CFE88_RS00790 PF08220 DeoR-like helix-turn-helix domain CFE88_RS00790 PF00455 DeoR C terminal sensor domain CFE88_RS00795 PF02502 Ribose/Galactose Isomerase CFE88_RS00800 PF02502 Ribose/Galactose Isomerase CFE88_RS00805 PF00294 pfkB family carbohydrate kinase CFE88_RS00810 PF01791 DeoC/LacD family aldolase CFE88_RS00815 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CFE88_RS00820 PF02378 Phosphotransferase system, EIIC CFE88_RS00820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CFE88_RS00825 PF00232 Glycosyl hydrolase family 1 CFE88_RS00835 PF00296 Luciferase-like monooxygenase CFE88_RS00840 PF00107 Zinc-binding dehydrogenase CFE88_RS00840 PF16884 N-terminal domain of oxidoreductase CFE88_RS00845 PF00107 Zinc-binding dehydrogenase CFE88_RS00845 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS00860 PF03780 Asp23 family, cell envelope-related function CFE88_RS00865 PF06276 Ferric iron reductase FhuF-like transporter CFE88_RS00865 PF04183 IucA / IucC family CFE88_RS00870 PF05977 Transmembrane secretion effector CFE88_RS00875 PF06276 Ferric iron reductase FhuF-like transporter CFE88_RS00875 PF04183 IucA / IucC family CFE88_RS00880 PF01168 Alanine racemase, N-terminal domain CFE88_RS00885 PF01497 Periplasmic binding protein CFE88_RS00890 PF01032 FecCD transport family CFE88_RS00895 PF01032 FecCD transport family CFE88_RS00900 PF07670 Nucleoside recognition CFE88_RS00905 PF03992 Antibiotic biosynthesis monooxygenase CFE88_RS00915 PF04307 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS00920 PF01704 UTP--glucose-1-phosphate uridylyltransferase CFE88_RS00930 PF07690 Major Facilitator Superfamily CFE88_RS00935 PF17080 Multidrug Resistance efflux pump CFE88_RS00940 PF07690 Major Facilitator Superfamily CFE88_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase CFE88_RS00995 PF02457 DisA bacterial checkpoint controller nucleotide-binding CFE88_RS01005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFE88_RS01005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFE88_RS01005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFE88_RS01005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFE88_RS01010 PF01380 SIS domain CFE88_RS01030 PF01545 Cation efflux family CFE88_RS01030 PF16916 Dimerisation domain of Zinc Transporter CFE88_RS01035 PF01022 Bacterial regulatory protein, arsR family CFE88_RS01040 PF13460 NAD(P)H-binding CFE88_RS01050 PF01238 Phosphomannose isomerase type I CFE88_RS01075 PF00210 Ferritin-like domain CFE88_RS01080 PF01048 Phosphorylase superfamily CFE88_RS01085 PF01791 DeoC/LacD family aldolase CFE88_RS01090 PF00591 Glycosyl transferase family, a/b domain CFE88_RS01090 PF02885 Glycosyl transferase family, helical bundle domain CFE88_RS01090 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CFE88_RS01095 PF01676 Metalloenzyme superfamily CFE88_RS01105 PF02664 S-Ribosylhomocysteinase (LuxS) CFE88_RS01125 PF03630 Fumble CFE88_RS01135 PF05066 HB1, ASXL, restriction endonuclease HTH domain CFE88_RS01140 PF06418 CTP synthase N-terminus CFE88_RS01140 PF00117 Glutamine amidotransferase class-I CFE88_RS01150 PF01116 Fructose-bisphosphate aldolase class-II CFE88_RS01155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFE88_RS01160 PF00171 Aldehyde dehydrogenase family CFE88_RS01165 PF07498 Rho termination factor, N-terminal domain CFE88_RS01165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFE88_RS01165 PF07497 Rho termination factor, RNA-binding domain CFE88_RS01170 PF01197 Ribosomal protein L31 CFE88_RS01175 PF00265 Thymidine kinase CFE88_RS01180 PF00472 RF-1 domain CFE88_RS01180 PF03462 PCRF domain CFE88_RS01185 PF05175 Methyltransferase small domain CFE88_RS01185 PF17827 PrmC N-terminal domain CFE88_RS01195 PF03481 Putative GTP-binding controlling metal-binding CFE88_RS01195 PF01300 Telomere recombination CFE88_RS01200 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFE88_RS01205 PF04260 Protein of unknown function (DUF436) CFE88_RS01210 PF00464 Serine hydroxymethyltransferase CFE88_RS01220 PF02350 UDP-N-acetylglucosamine 2-epimerase CFE88_RS01225 PF03899 ATP synthase I chain CFE88_RS01230 PF00119 ATP synthase A chain CFE88_RS01235 PF00137 ATP synthase subunit C CFE88_RS01240 PF00430 ATP synthase B/B' CF(0) CFE88_RS01245 PF00213 ATP synthase delta (OSCP) subunit CFE88_RS01250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFE88_RS01250 PF00306 ATP synthase alpha/beta chain, C terminal domain CFE88_RS01250 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFE88_RS01255 PF00231 ATP synthase CFE88_RS01260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CFE88_RS01260 PF02874 ATP synthase alpha/beta family, beta-barrel domain CFE88_RS01265 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CFE88_RS01265 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CFE88_RS01275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFE88_RS01280 PF07977 FabA-like domain CFE88_RS01290 PF00436 Single-strand binding protein family CFE88_RS01295 PF06737 Transglycosylase-like domain CFE88_RS01300 PF03070 TENA/THI-4/PQQC family CFE88_RS01305 PF08543 Phosphomethylpyrimidine kinase CFE88_RS01310 PF02110 Hydroxyethylthiazole kinase family CFE88_RS01315 PF02581 Thiamine monophosphate synthase CFE88_RS01320 PF02096 60Kd inner membrane protein CFE88_RS01325 PF01966 HD domain CFE88_RS01330 PF13396 Phospholipase_D-nuclease N-terminal CFE88_RS01330 PF13091 PLD-like domain CFE88_RS01335 PF02583 Metal-sensitive transcriptional repressor CFE88_RS01350 PF01098 Cell cycle protein CFE88_RS01355 PF01820 D-ala D-ala ligase N-terminus CFE88_RS01355 PF07478 D-ala D-ala ligase C-terminus CFE88_RS01360 PF01225 Mur ligase family, catalytic domain CFE88_RS01360 PF08245 Mur ligase middle domain CFE88_RS01360 PF02875 Mur ligase family, glutamate ligase domain CFE88_RS01365 PF00270 DEAD/DEAH box helicase CFE88_RS01365 PF00271 Helicase conserved C-terminal domain CFE88_RS01375 PF03703 Bacterial PH domain CFE88_RS01380 PF03703 Bacterial PH domain CFE88_RS01385 PF01648 4'-phosphopantetheinyl transferase superfamily CFE88_RS01390 PF01168 Alanine racemase, N-terminal domain CFE88_RS01390 PF00842 Alanine racemase, C-terminal domain CFE88_RS01400 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CFE88_RS01405 PF07228 Stage II sporulation protein E (SpoIIE) CFE88_RS01405 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CFE88_RS01410 PF01740 STAS domain CFE88_RS01415 PF13581 Histidine kinase-like ATPase domain CFE88_RS01420 PF04545 Sigma-70, region 4 CFE88_RS01420 PF04539 Sigma-70 region 3 CFE88_RS01420 PF04542 Sigma-70 region 2 CFE88_RS01425 PF09371 Tex-like protein N-terminal domain CFE88_RS01425 PF00575 S1 RNA binding domain CFE88_RS01425 PF16921 Tex protein YqgF-like domain CFE88_RS01425 PF17674 HHH domain CFE88_RS01430 PF10263 SprT-like family CFE88_RS01465 PF00291 Pyridoxal-phosphate dependent enzyme CFE88_RS01465 PF00585 C-terminal regulatory domain of Threonine dehydratase CFE88_RS01470 PF00694 Aconitase C-terminal domain CFE88_RS01475 PF00330 Aconitase family (aconitate hydratase) CFE88_RS01480 PF00180 Isocitrate/isopropylmalate dehydrogenase CFE88_RS01485 PF00682 HMGL-like CFE88_RS01485 PF08502 LeuA allosteric (dimerisation) domain CFE88_RS01490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CFE88_RS01490 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CFE88_RS01500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS01500 PF00205 Thiamine pyrophosphate enzyme, central domain CFE88_RS01500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFE88_RS01505 PF00920 Dehydratase family CFE88_RS01510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CFE88_RS01515 PF00814 Glycoprotease family CFE88_RS01520 PF00583 Acetyltransferase (GNAT) family CFE88_RS01525 PF00814 Glycoprotease family CFE88_RS01530 PF01624 MutS domain I CFE88_RS01530 PF05188 MutS domain II CFE88_RS01530 PF00488 MutS domain V CFE88_RS01530 PF05192 MutS domain III CFE88_RS01530 PF05190 MutS family domain IV CFE88_RS01535 PF16326 ABC transporter C-terminal domain CFE88_RS01535 PF12848 ABC transporter CFE88_RS01535 PF00005 ABC transporter CFE88_RS01540 PF02629 CoA binding domain CFE88_RS01540 PF06971 Putative DNA-binding protein N-terminus CFE88_RS01550 PF04143 Sulphur transport CFE88_RS01555 PF01206 Sulfurtransferase TusA CFE88_RS01560 PF00909 Ammonium Transporter Family CFE88_RS01565 PF13407 Periplasmic binding protein domain CFE88_RS01565 PF00356 Bacterial regulatory proteins, lacI family CFE88_RS01575 PF08244 Glycosyl hydrolases family 32 C terminal CFE88_RS01575 PF00251 Glycosyl hydrolases family 32 N-terminal domain CFE88_RS01580 PF00294 pfkB family carbohydrate kinase CFE88_RS01585 PF00072 Response regulator receiver domain CFE88_RS01585 PF04397 LytTr DNA-binding domain CFE88_RS01590 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CFE88_RS01590 PF17203 Single cache domain 3 CFE88_RS01590 PF00989 PAS fold CFE88_RS01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS01600 PF04647 Accessory gene regulator B CFE88_RS01605 PF05372 Delta lysin family CFE88_RS01610 PF00795 Carbon-nitrogen hydrolase CFE88_RS01620 PF02517 CPBP intramembrane metalloprotease CFE88_RS01625 PF00166 Chaperonin 10 Kd subunit CFE88_RS01630 PF00118 TCP-1/cpn60 chaperonin family CFE88_RS01635 PF14659 Phage integrase, N-terminal SAM-like domain CFE88_RS01635 PF00589 Phage integrase family CFE88_RS01675 PF00392 Bacterial regulatory proteins, gntR family CFE88_RS01680 PF00005 ABC transporter CFE88_RS01690 PF00005 ABC transporter CFE88_RS01735 PF10282 Lactonase, 7-bladed beta-propeller CFE88_RS01740 PF00171 Aldehyde dehydrogenase family CFE88_RS01745 PF02833 DHHA2 domain CFE88_RS01745 PF01368 DHH family CFE88_RS01750 PF00857 Isochorismatase family CFE88_RS01760 PF00800 Prephenate dehydratase CFE88_RS01760 PF01842 ACT domain CFE88_RS01765 PF02898 Nitric oxide synthase, oxygenase domain CFE88_RS01770 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CFE88_RS01770 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CFE88_RS01770 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CFE88_RS01775 PF02540 NAD synthase CFE88_RS01780 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CFE88_RS01785 PF14044 NETI protein CFE88_RS01790 PF10397 Adenylosuccinate lyase C-terminus CFE88_RS01790 PF00206 Lyase CFE88_RS01795 PF01371 Trp repressor protein CFE88_RS01800 PF01884 PcrB family CFE88_RS01805 PF00580 UvrD/REP helicase N-terminal domain CFE88_RS01805 PF13361 UvrD-like helicase C-terminal domain CFE88_RS01810 PF12826 Helix-hairpin-helix motif CFE88_RS01810 PF01653 NAD-dependent DNA ligase adenylation domain CFE88_RS01810 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CFE88_RS01810 PF00533 BRCA1 C Terminus (BRCT) domain CFE88_RS01810 PF03120 NAD-dependent DNA ligase OB-fold domain CFE88_RS01815 PF07537 CamS sex pheromone cAM373 precursor CFE88_RS01820 PF00474 Sodium:solute symporter family CFE88_RS01825 PF02686 Glu-tRNAGln amidotransferase C subunit CFE88_RS01830 PF01425 Amidase CFE88_RS01835 PF02934 GatB/GatE catalytic domain CFE88_RS01835 PF02637 GatB domain CFE88_RS01840 PF00781 Diacylglycerol kinase catalytic domain CFE88_RS01845 PF05958 tRNA (Uracil-5-)-methyltransferase CFE88_RS01855 PF11799 impB/mucB/samB family C-terminal domain CFE88_RS01855 PF00817 impB/mucB/samB family CFE88_RS01865 PF00210 Ferritin-like domain CFE88_RS01870 PF08245 Mur ligase middle domain CFE88_RS01870 PF08353 Domain of unknown function (DUF1727) CFE88_RS01875 PF07685 CobB/CobQ-like glutamine amidotransferase domain CFE88_RS01885 PF06081 Aromatic acid exporter family member 1 CFE88_RS01890 PF00557 Metallopeptidase family M24 CFE88_RS01905 PF07730 Histidine kinase CFE88_RS01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS01910 PF00196 Bacterial regulatory proteins, luxR family CFE88_RS01910 PF00072 Response regulator receiver domain CFE88_RS01915 PF03631 Virulence factor BrkB CFE88_RS01925 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFE88_RS01930 PF06569 Protein of unknown function (DUF1128) CFE88_RS01935 PF02073 Thermophilic metalloprotease (M29) CFE88_RS01940 PF03061 Thioesterase superfamily CFE88_RS01945 PF08756 YfkB-like domain CFE88_RS01945 PF04055 Radical SAM superfamily CFE88_RS01955 PF01965 DJ-1/PfpI family CFE88_RS01960 PF00912 Transglycosylase CFE88_RS01965 PF02631 RecX family CFE88_RS01975 PF00005 ABC transporter CFE88_RS01975 PF01476 LysM domain CFE88_RS01985 PF04307 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS01990 PF00730 HhH-GPD superfamily base excision DNA repair protein CFE88_RS01990 PF14815 NUDIX domain CFE88_RS01990 PF00633 Helix-hairpin-helix motif CFE88_RS01995 PF04167 Protein of unknown function (DUF402) CFE88_RS02000 PF00005 ABC transporter CFE88_RS02000 PF00664 ABC transporter transmembrane region CFE88_RS02005 PF06081 Aromatic acid exporter family member 1 CFE88_RS02010 PF00202 Aminotransferase class-III CFE88_RS02015 PF00578 AhpC/TSA family CFE88_RS02020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS02025 PF01475 Ferric uptake regulator family CFE88_RS02190 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS02195 PF00005 ABC transporter CFE88_RS02200 PF08331 Domain of unknown function (DUF1730) CFE88_RS02205 PF00588 SpoU rRNA Methylase family CFE88_RS02225 PF00206 Lyase CFE88_RS02225 PF10415 Fumarase C C-terminus CFE88_RS02235 PF00849 RNA pseudouridylate synthase CFE88_RS02235 PF01479 S4 domain CFE88_RS02240 PF13185 GAF domain CFE88_RS02240 PF07730 Histidine kinase CFE88_RS02245 PF00196 Bacterial regulatory proteins, luxR family CFE88_RS02245 PF00072 Response regulator receiver domain CFE88_RS02255 PF04286 Protein of unknown function (DUF445) CFE88_RS02260 PF06133 Control of competence regulator ComK, YlbF/YmcA CFE88_RS02265 PF00149 Calcineurin-like phosphoesterase CFE88_RS02275 PF01966 HD domain CFE88_RS02285 PF00639 PPIC-type PPIASE domain CFE88_RS02300 PF01230 HIT domain CFE88_RS02305 PF00005 ABC transporter CFE88_RS02310 PF05975 Bacterial ABC transporter protein EcsB CFE88_RS02325 PF01208 Uroporphyrinogen decarboxylase (URO-D) CFE88_RS02330 PF00762 Ferrochelatase CFE88_RS02335 PF01593 Flavin containing amine oxidoreductase CFE88_RS02405 PF00501 AMP-binding enzyme CFE88_RS02405 PF13193 AMP-binding enzyme C-terminal domain CFE88_RS02415 PF01809 Putative membrane protein insertion efficiency factor CFE88_RS02420 PF00293 NUDIX domain CFE88_RS02425 PF00326 Prolyl oligopeptidase family CFE88_RS02430 PF01293 Phosphoenolpyruvate carboxykinase CFE88_RS02435 PF00438 S-adenosylmethionine synthetase, N-terminal domain CFE88_RS02435 PF02772 S-adenosylmethionine synthetase, central domain CFE88_RS02435 PF02773 S-adenosylmethionine synthetase, C-terminal domain CFE88_RS02445 PF00248 Aldo/keto reductase family CFE88_RS02450 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFE88_RS02455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CFE88_RS02465 PF00923 Transaldolase/Fructose-6-phosphate aldolase CFE88_RS02480 PF00196 Bacterial regulatory proteins, luxR family CFE88_RS02480 PF04542 Sigma-70 region 2 CFE88_RS02495 PF13457 GW (Gly-Tryp) dipeptide domain CFE88_RS02495 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFE88_RS02505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFE88_RS02505 PF01872 RibD C-terminal domain CFE88_RS02510 PF00677 Lumazine binding domain CFE88_RS02515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CFE88_RS02515 PF00925 GTP cyclohydrolase II CFE88_RS02520 PF00885 6,7-dimethyl-8-ribityllumazine synthase CFE88_RS02525 PF01619 Proline dehydrogenase CFE88_RS02530 PF12146 Serine aminopeptidase, S33 CFE88_RS02535 PF01047 MarR family CFE88_RS02540 PF06962 Putative rRNA methylase CFE88_RS02545 PF16199 Radical_SAM C-terminal domain CFE88_RS02545 PF04055 Radical SAM superfamily CFE88_RS02550 PF07690 Major Facilitator Superfamily CFE88_RS02555 PF08264 Anticodon-binding domain of tRNA CFE88_RS02555 PF09334 tRNA synthetases class I (M) CFE88_RS02555 PF00133 tRNA synthetases class I (I, L, M and V) CFE88_RS02555 PF13603 Leucyl-tRNA synthetase, Domain 2 CFE88_RS02575 PF14667 Polysaccharide biosynthesis C-terminal domain CFE88_RS02575 PF01943 Polysaccharide biosynthesis protein CFE88_RS02580 PF00849 RNA pseudouridylate synthase CFE88_RS02580 PF01479 S4 domain CFE88_RS02590 PF01546 Peptidase family M20/M25/M40 CFE88_RS02595 PF01063 Amino-transferase class IV CFE88_RS02600 PF01636 Phosphotransferase enzyme family CFE88_RS02605 PF02390 Putative methyltransferase CFE88_RS02615 PF05343 M42 glutamyl aminopeptidase CFE88_RS02620 PF00085 Thioredoxin CFE88_RS02625 PF07285 Protein of unknown function (DUF1444) CFE88_RS02630 PF14794 Domain of unknown function (DUF4479) CFE88_RS02630 PF01588 Putative tRNA binding domain CFE88_RS02635 PF17854 FtsK alpha domain CFE88_RS02635 PF09397 Ftsk gamma domain CFE88_RS02635 PF01580 FtsK/SpoIIIE family CFE88_RS02640 PF02875 Mur ligase family, glutamate ligase domain CFE88_RS02640 PF01225 Mur ligase family, catalytic domain CFE88_RS02640 PF08245 Mur ligase middle domain CFE88_RS02645 PF06103 Bacterial protein of unknown function (DUF948) CFE88_RS02655 PF01817 Chorismate mutase type II CFE88_RS02655 PF00793 DAHP synthetase I family CFE88_RS02660 PF00356 Bacterial regulatory proteins, lacI family CFE88_RS02665 PF01268 Formate--tetrahydrofolate ligase CFE88_RS02670 PF00912 Transglycosylase CFE88_RS02670 PF00905 Penicillin binding protein transpeptidase domain CFE88_RS02675 PF01479 S4 domain CFE88_RS02675 PF00579 tRNA synthetases class I (W and Y) CFE88_RS02680 PF13180 PDZ domain CFE88_RS02685 PF01553 Acyltransferase CFE88_RS02690 PF00367 phosphotransferase system, EIIB CFE88_RS02690 PF02378 Phosphotransferase system, EIIC CFE88_RS02700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS02700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02700 PF01842 ACT domain CFE88_RS02705 PF00266 Aminotransferase class-V CFE88_RS02710 PF02566 OsmC-like protein CFE88_RS02715 PF03009 Glycerophosphoryl diester phosphodiesterase family CFE88_RS02720 PF01479 S4 domain CFE88_RS02720 PF00163 Ribosomal protein S4/S9 N-terminal domain CFE88_RS02730 PF13185 GAF domain CFE88_RS02735 PF06160 Septation ring formation regulator, EzrA CFE88_RS02740 PF00266 Aminotransferase class-V CFE88_RS02745 PF02926 THUMP domain CFE88_RS02745 PF02568 Thiamine biosynthesis protein (ThiI) CFE88_RS02750 PF01925 Sulfite exporter TauE/SafE CFE88_RS02755 PF08534 Redoxin CFE88_RS02760 PF02384 N-6 DNA Methylase CFE88_RS02765 PF00871 Acetokinase family CFE88_RS02770 PF00582 Universal stress protein family CFE88_RS02775 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CFE88_RS02775 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CFE88_RS02780 PF01321 Creatinase/Prolidase N-terminal domain CFE88_RS02780 PF00557 Metallopeptidase family M24 CFE88_RS02795 PF07085 DRTGG domain CFE88_RS02795 PF00392 Bacterial regulatory proteins, gntR family CFE88_RS02795 PF03061 Thioesterase superfamily CFE88_RS02795 PF00571 CBS domain CFE88_RS02800 PF01368 DHH family CFE88_RS02800 PF02272 DHHA1 domain CFE88_RS02805 PF01336 OB-fold nucleic acid binding domain CFE88_RS02805 PF14579 Helix-hairpin-helix motif CFE88_RS02805 PF02811 PHP domain CFE88_RS02805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFE88_RS02805 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFE88_RS02810 PF00390 Malic enzyme, N-terminal domain CFE88_RS02810 PF03949 Malic enzyme, NAD binding domain CFE88_RS02815 PF01039 Carboxyl transferase domain CFE88_RS02815 PF17848 Acetyl-coA carboxylase zinc finger domain CFE88_RS02820 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CFE88_RS02825 PF00365 Phosphofructokinase CFE88_RS02830 PF02887 Pyruvate kinase, alpha/beta domain CFE88_RS02830 PF00391 PEP-utilising enzyme, mobile domain CFE88_RS02830 PF00224 Pyruvate kinase, barrel domain CFE88_RS02835 PF00324 Amino acid permease CFE88_RS02840 PF00285 Citrate synthase, C-terminal domain CFE88_RS02845 PF00180 Isocitrate/isopropylmalate dehydrogenase CFE88_RS02850 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS02850 PF00072 Response regulator receiver domain CFE88_RS02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS02855 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS02855 PF00989 PAS fold CFE88_RS02855 PF16736 Single Cache-like CFE88_RS02860 PF01367 5'-3' exonuclease, C-terminal SAM fold CFE88_RS02860 PF00476 DNA polymerase family A CFE88_RS02860 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFE88_RS02865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CFE88_RS02865 PF06827 Zinc finger found in FPG and IleRS CFE88_RS02865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CFE88_RS02870 PF01121 Dephospho-CoA kinase CFE88_RS02880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFE88_RS02880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFE88_RS02885 PF03477 ATP cone domain CFE88_RS02890 PF07261 Replication initiation and membrane attachment CFE88_RS02895 PF07319 Primosomal protein DnaI N-terminus CFE88_RS02895 PF01695 IstB-like ATP binding protein CFE88_RS02900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFE88_RS02900 PF02824 TGS domain CFE88_RS02900 PF03129 Anticodon binding domain CFE88_RS02900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFE88_RS02905 PF00324 Amino acid permease CFE88_RS02910 PF00707 Translation initiation factor IF-3, C-terminal domain CFE88_RS02910 PF05198 Translation initiation factor IF-3, N-terminal domain CFE88_RS02915 PF01632 Ribosomal protein L35 CFE88_RS02920 PF00453 Ribosomal protein L20 CFE88_RS02935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CFE88_RS02935 PF05697 Bacterial trigger factor protein (TF) CFE88_RS02935 PF05698 Bacterial trigger factor protein (TF) C-terminus CFE88_RS02940 PF06689 ClpX C4-type zinc finger CFE88_RS02940 PF07724 AAA domain (Cdc48 subfamily) CFE88_RS02940 PF10431 C-terminal, D2-small domain, of ClpB protein CFE88_RS02945 PF01926 50S ribosome-binding GTPase CFE88_RS02950 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CFE88_RS02950 PF01488 Shikimate / quinate 5-dehydrogenase CFE88_RS02950 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CFE88_RS02960 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CFE88_RS02960 PF03900 Porphobilinogen deaminase, C-terminal domain CFE88_RS02965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFE88_RS02965 PF02602 Uroporphyrinogen-III synthase HemD CFE88_RS02970 PF00490 Delta-aminolevulinic acid dehydratase CFE88_RS02975 PF00202 Aminotransferase class-III CFE88_RS02985 PF03352 Methyladenine glycosylase CFE88_RS02990 PF10458 Valyl tRNA synthetase tRNA binding arm CFE88_RS02990 PF08264 Anticodon-binding domain of tRNA CFE88_RS02990 PF00133 tRNA synthetases class I (I, L, M and V) CFE88_RS02995 PF08245 Mur ligase middle domain CFE88_RS02995 PF02875 Mur ligase family, glutamate ligase domain CFE88_RS03005 PF04002 RadC-like JAB domain CFE88_RS03025 PF04085 rod shape-determining protein MreC CFE88_RS03035 PF00829 Ribosomal prokaryotic L21 protein CFE88_RS03040 PF04327 Cysteine protease Prp CFE88_RS03045 PF01016 Ribosomal L27 protein CFE88_RS03050 PF01926 50S ribosome-binding GTPase CFE88_RS03050 PF01018 GTP1/OBG CFE88_RS03050 PF09269 Domain of unknown function (DUF1967) CFE88_RS03060 PF01330 RuvA N terminal domain CFE88_RS03060 PF07499 RuvA, C-terminal domain CFE88_RS03065 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFE88_RS03065 PF05491 RuvB C-terminal winged helix domain CFE88_RS03065 PF17864 RuvB AAA lid domain CFE88_RS03070 PF02547 Queuosine biosynthesis protein CFE88_RS03075 PF01702 Queuine tRNA-ribosyltransferase CFE88_RS03080 PF02699 Preprotein translocase subunit CFE88_RS03085 PF07549 SecD/SecF GG Motif CFE88_RS03085 PF02355 Protein export membrane protein CFE88_RS03090 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CFE88_RS03090 PF01368 DHH family CFE88_RS03090 PF02272 DHHA1 domain CFE88_RS03090 PF17768 RecJ OB domain CFE88_RS03095 PF00156 Phosphoribosyl transferase domain CFE88_RS03100 PF13291 ACT domain CFE88_RS03100 PF04607 Region found in RelA / SpoT proteins CFE88_RS03100 PF02824 TGS domain CFE88_RS03105 PF02580 D-Tyr-tRNA(Tyr) deacylase CFE88_RS03110 PF08239 Bacterial SH3 domain CFE88_RS03110 PF01520 N-acetylmuramoyl-L-alanine amidase CFE88_RS03115 PF03129 Anticodon binding domain CFE88_RS03115 PF13393 Histidyl-tRNA synthetase CFE88_RS03120 PF02938 GAD domain CFE88_RS03120 PF00152 tRNA synthetases class II (D, K and N) CFE88_RS03120 PF01336 OB-fold nucleic acid binding domain CFE88_RS03135 PF00899 ThiF family CFE88_RS03140 PF05496 Holliday junction DNA helicase RuvB P-loop domain CFE88_RS03140 PF16193 AAA C-terminal domain CFE88_RS03140 PF12002 MgsA AAA+ ATPase C terminal CFE88_RS03145 PF02082 Transcriptional regulator CFE88_RS03155 PF00296 Luciferase-like monooxygenase CFE88_RS03160 PF00266 Aminotransferase class-V CFE88_RS03175 PF13538 UvrD-like helicase C-terminal domain CFE88_RS03175 PF14490 Helix-hairpin-helix containing domain CFE88_RS03175 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CFE88_RS03180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CFE88_RS03180 PF01411 tRNA synthetases class II (A) CFE88_RS03180 PF02272 DHHA1 domain CFE88_RS03185 PF06135 IreB regulatory phosphoprotein CFE88_RS03190 PF03652 Holliday junction resolvase CFE88_RS03195 PF06949 Protein of unknown function (DUF1292) CFE88_RS03205 PF01136 Peptidase family U32 CFE88_RS03210 PF01136 Peptidase family U32 CFE88_RS03210 PF16325 Peptidase family U32 C-terminal domain CFE88_RS03215 PF00485 Phosphoribulokinase / Uridine kinase family CFE88_RS03220 PF03449 Transcription elongation factor, N-terminal CFE88_RS03220 PF01272 Transcription elongation factor, GreA/GreB, C-term CFE88_RS03225 PF02682 Carboxyltransferase domain, subdomain C and D CFE88_RS03230 PF02626 Carboxyltransferase domain, subdomain A and B CFE88_RS03235 PF00364 Biotin-requiring enzyme CFE88_RS03240 PF02785 Biotin carboxylase C-terminal domain CFE88_RS03240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFE88_RS03240 PF00289 Biotin carboxylase, N-terminal domain CFE88_RS03245 PF03746 LamB/YcsF family CFE88_RS03250 PF01566 Natural resistance-associated macrophage protein CFE88_RS03255 PF01048 Phosphorylase superfamily CFE88_RS03265 PF01926 50S ribosome-binding GTPase CFE88_RS03270 PF01488 Shikimate / quinate 5-dehydrogenase CFE88_RS03270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CFE88_RS03270 PF08501 Shikimate dehydrogenase substrate binding domain CFE88_RS03275 PF01985 CRS1 / YhbY (CRM) domain CFE88_RS03280 PF01467 Cytidylyltransferase-like CFE88_RS03285 PF01966 HD domain CFE88_RS03295 PF13649 Methyltransferase domain CFE88_RS03305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFE88_RS03310 PF03772 Competence protein CFE88_RS03310 PF13567 Domain of unknown function (DUF4131) CFE88_RS03310 PF00753 Metallo-beta-lactamase superfamily CFE88_RS03315 PF06144 DNA polymerase III, delta subunit CFE88_RS03325 PF01649 Ribosomal protein S20 CFE88_RS03330 PF06421 GTP-binding protein LepA C-terminus CFE88_RS03330 PF03144 Elongation factor Tu domain 2 CFE88_RS03330 PF00009 Elongation factor Tu GTP binding domain CFE88_RS03330 PF14492 Elongation Factor G, domain II CFE88_RS03330 PF00679 Elongation factor G C-terminus CFE88_RS03335 PF04055 Radical SAM superfamily CFE88_RS03335 PF06969 HemN C-terminal domain CFE88_RS03340 PF01628 HrcA protein C terminal domain CFE88_RS03345 PF01025 GrpE CFE88_RS03350 PF00012 Hsp70 protein CFE88_RS03355 PF00684 DnaJ central domain CFE88_RS03355 PF00226 DnaJ domain CFE88_RS03355 PF01556 DnaJ C terminal domain CFE88_RS03365 PF04452 RNA methyltransferase CFE88_RS03370 PF00919 Uncharacterized protein family UPF0004 CFE88_RS03370 PF04055 Radical SAM superfamily CFE88_RS03370 PF01938 TRAM domain CFE88_RS03375 PF01165 Ribosomal protein S21 CFE88_RS03380 PF01972 Serine dehydrogenase proteinase CFE88_RS03380 PF01957 NfeD-like C-terminal, partner-binding CFE88_RS03385 PF12127 SigmaW regulon antibacterial CFE88_RS03395 PF02562 PhoH-like protein CFE88_RS03400 PF02130 Uncharacterized protein family UPF0054 CFE88_RS03405 PF01219 Prokaryotic diacylglycerol kinase CFE88_RS03410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CFE88_RS03415 PF01926 50S ribosome-binding GTPase CFE88_RS03415 PF07650 KH domain CFE88_RS03420 PF02565 Recombination protein O C terminal CFE88_RS03420 PF11967 Recombination protein O N terminal CFE88_RS03425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFE88_RS03425 PF03129 Anticodon binding domain CFE88_RS03430 PF00571 CBS domain CFE88_RS03430 PF08279 HTH domain CFE88_RS03435 PF03618 Kinase/pyrophosphorylase CFE88_RS03440 PF08275 DNA primase catalytic core, N-terminal domain CFE88_RS03440 PF00772 DnaB-like helicase N terminal domain CFE88_RS03440 PF13662 Toprim domain CFE88_RS03440 PF01807 CHC2 zinc finger CFE88_RS03445 PF04539 Sigma-70 region 3 CFE88_RS03445 PF04542 Sigma-70 region 2 CFE88_RS03445 PF04545 Sigma-70, region 4 CFE88_RS03445 PF03979 Sigma-70 factor, region 1.1 CFE88_RS03445 PF00140 Sigma-70 factor, region 1.2 CFE88_RS03450 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CFE88_RS03455 PF01784 NIF3 (NGG1p interacting factor 3) CFE88_RS03460 PF00270 DEAD/DEAH box helicase CFE88_RS03460 PF00271 Helicase conserved C-terminal domain CFE88_RS03465 PF01261 Xylose isomerase-like TIM barrel CFE88_RS03470 PF00005 ABC transporter CFE88_RS03475 PF00950 ABC 3 transport family CFE88_RS03480 PF01475 Ferric uptake regulator family CFE88_RS03485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CFE88_RS03485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CFE88_RS03495 PF03717 Penicillin-binding Protein dimerisation domain CFE88_RS03495 PF00905 Penicillin binding protein transpeptidase domain CFE88_RS03500 PF00471 Ribosomal protein L33 CFE88_RS03505 PF01812 5-formyltetrahydrofolate cyclo-ligase family CFE88_RS03510 PF01694 Rhomboid family CFE88_RS03515 PF06014 Bacterial protein of unknown function (DUF910) CFE88_RS03520 PF00480 ROK family CFE88_RS03525 PF01910 Thiamine-binding protein CFE88_RS03530 PF00753 Metallo-beta-lactamase superfamily CFE88_RS03535 PF00437 Type II/IV secretion system protein CFE88_RS03540 PF00482 Type II secretion system (T2SS), protein F CFE88_RS03545 PF07963 Prokaryotic N-terminal methylation motif CFE88_RS03570 PF01202 Shikimate kinase CFE88_RS03575 PF01571 Aminomethyltransferase folate-binding domain CFE88_RS03575 PF08669 Glycine cleavage T-protein C-terminal barrel domain CFE88_RS03580 PF02347 Glycine cleavage system P-protein CFE88_RS03585 PF02347 Glycine cleavage system P-protein CFE88_RS03595 PF00581 Rhodanese-like domain CFE88_RS03600 PF03099 Biotin/lipoate A/B protein ligase family CFE88_RS03615 PF01321 Creatinase/Prolidase N-terminal domain CFE88_RS03615 PF00557 Metallopeptidase family M24 CFE88_RS03620 PF01132 Elongation factor P (EF-P) OB domain CFE88_RS03620 PF09285 Elongation factor P, C-terminal CFE88_RS03620 PF08207 Elongation factor P (EF-P) KOW-like domain CFE88_RS03625 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFE88_RS03625 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS03630 PF01960 ArgJ family CFE88_RS03635 PF00696 Amino acid kinase family CFE88_RS03640 PF00202 Aminotransferase class-III CFE88_RS03645 PF00364 Biotin-requiring enzyme CFE88_RS03650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFE88_RS03650 PF00289 Biotin carboxylase, N-terminal domain CFE88_RS03650 PF02785 Biotin carboxylase C-terminal domain CFE88_RS03655 PF03780 Asp23 family, cell envelope-related function CFE88_RS03660 PF01029 NusB family CFE88_RS03665 PF02601 Exonuclease VII, large subunit CFE88_RS03665 PF13742 OB-fold nucleic acid binding domain CFE88_RS03670 PF02609 Exonuclease VII small subunit CFE88_RS03675 PF00348 Polyprenyl synthetase CFE88_RS03680 PF01316 Arginine repressor, DNA binding domain CFE88_RS03680 PF02863 Arginine repressor, C-terminal domain CFE88_RS03685 PF13476 AAA domain CFE88_RS03690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS03690 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS03695 PF00676 Dehydrogenase E1 component CFE88_RS03700 PF02780 Transketolase, C-terminal domain CFE88_RS03700 PF02779 Transketolase, pyrimidine binding domain CFE88_RS03705 PF00364 Biotin-requiring enzyme CFE88_RS03705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFE88_RS03705 PF02817 e3 binding domain CFE88_RS03710 PF06491 Disulphide isomerase CFE88_RS03715 PF06081 Aromatic acid exporter family member 1 CFE88_RS03715 PF11728 Putative aromatic acid exporter C-terminal domain CFE88_RS03720 PF07687 Peptidase dimerisation domain CFE88_RS03720 PF01546 Peptidase family M20/M25/M40 CFE88_RS03725 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CFE88_RS03725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CFE88_RS03730 PF00128 Alpha amylase, catalytic domain CFE88_RS03730 PF16657 Maltogenic Amylase, C-terminal domain CFE88_RS03740 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFE88_RS03740 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFE88_RS03745 PF12706 Beta-lactamase superfamily domain CFE88_RS03750 PF14748 Pyrroline-5-carboxylate reductase dimerisation CFE88_RS03750 PF03807 NADP oxidoreductase coenzyme F420-dependent CFE88_RS03755 PF00106 short chain dehydrogenase CFE88_RS03760 PF00248 Aldo/keto reductase family CFE88_RS03765 PF00293 NUDIX domain CFE88_RS03770 PF01475 Ferric uptake regulator family CFE88_RS03775 PF00589 Phage integrase family CFE88_RS03775 PF02899 Phage integrase, N-terminal SAM-like domain CFE88_RS03780 PF03745 Domain of unknown function (DUF309) CFE88_RS03785 PF02616 Segregation and condensation protein ScpA CFE88_RS03790 PF04079 Segregation and condensation complex subunit ScpB CFE88_RS03795 PF00849 RNA pseudouridylate synthase CFE88_RS03795 PF01479 S4 domain CFE88_RS03800 PF00072 Response regulator receiver domain CFE88_RS03800 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS03805 PF18698 Histidine kinase sensor domain CFE88_RS03805 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS03805 PF00672 HAMP domain CFE88_RS03810 PF12822 ECF transporter, substrate-specific component CFE88_RS03830 PF00271 Helicase conserved C-terminal domain CFE88_RS03830 PF00270 DEAD/DEAH box helicase CFE88_RS03835 PF01476 LysM domain CFE88_RS03845 PF00710 Asparaginase, N-terminal CFE88_RS03845 PF17763 Glutaminase/Asparaginase C-terminal domain CFE88_RS03850 PF02224 Cytidylate kinase CFE88_RS03855 PF00575 S1 RNA binding domain CFE88_RS03860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CFE88_RS03860 PF01926 50S ribosome-binding GTPase CFE88_RS03865 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CFE88_RS03865 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CFE88_RS03870 PF00216 Bacterial DNA-binding protein CFE88_RS03880 PF01209 ubiE/COQ5 methyltransferase family CFE88_RS03885 PF00348 Polyprenyl synthetase CFE88_RS03890 PF00334 Nucleoside diphosphate kinase CFE88_RS03895 PF01264 Chorismate synthase CFE88_RS03900 PF01761 3-dehydroquinate synthase CFE88_RS03905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CFE88_RS03915 PF08858 IDEAL domain CFE88_RS03915 PF08864 UPF0302 domain CFE88_RS03920 PF07187 Protein of unknown function (DUF1405) CFE88_RS03925 PF04298 Putative neutral zinc metallopeptidase CFE88_RS03930 PF03819 MazG nucleotide pyrophosphohydrolase domain CFE88_RS03935 PF00534 Glycosyl transferases group 1 CFE88_RS03935 PF13439 Glycosyltransferase Family 4 CFE88_RS03940 PF12627 Probable RNA and SrmB- binding site of polymerase A CFE88_RS03940 PF01743 Poly A polymerase head domain CFE88_RS03940 PF13735 tRNA nucleotidyltransferase domain 2 putative CFE88_RS03945 PF08279 HTH domain CFE88_RS03945 PF02237 Biotin protein ligase C terminal domain CFE88_RS03945 PF03099 Biotin/lipoate A/B protein ligase family CFE88_RS03950 PF04851 Type III restriction enzyme, res subunit CFE88_RS03950 PF13307 Helicase C-terminal domain CFE88_RS03950 PF00929 Exonuclease CFE88_RS03955 PF00152 tRNA synthetases class II (D, K and N) CFE88_RS03955 PF01336 OB-fold nucleic acid binding domain CFE88_RS03960 PF07261 Replication initiation and membrane attachment CFE88_RS03965 PF10576 Iron-sulfur binding domain of endonuclease III CFE88_RS03965 PF00730 HhH-GPD superfamily base excision DNA repair protein CFE88_RS03965 PF00633 Helix-hairpin-helix motif CFE88_RS03975 PF00912 Transglycosylase CFE88_RS03975 PF00905 Penicillin binding protein transpeptidase domain CFE88_RS03980 PF03838 Recombination protein U CFE88_RS03990 PF06908 YspA SLOG family CFE88_RS03995 PF05103 DivIVA protein CFE88_RS04005 PF02926 THUMP domain CFE88_RS04005 PF01170 Putative RNA methylase family UPF0020 CFE88_RS04015 PF00350 Dynamin family CFE88_RS04020 PF01367 5'-3' exonuclease, C-terminal SAM fold CFE88_RS04020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CFE88_RS04025 PF07564 Domain of Unknown Function (DUF1542) CFE88_RS04025 PF01468 GA module CFE88_RS04035 PF02592 Putative vitamin uptake transporter CFE88_RS04040 PF10782 Zinc-finger CFE88_RS04045 PF13769 Virulence factor CFE88_RS04045 PF08712 Scaffold protein Nfu/NifU N terminal CFE88_RS04050 PF06491 Disulphide isomerase CFE88_RS04070 PF00303 Thymidylate synthase CFE88_RS04075 PF00186 Dihydrofolate reductase CFE88_RS04080 PF02645 Uncharacterised protein, DegV family COG1307 CFE88_RS04085 PF01625 Peptide methionine sulfoxide reductase CFE88_RS04090 PF01641 SelR domain CFE88_RS04095 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CFE88_RS04100 PF06855 YozE SAM-like fold CFE88_RS04105 PF03572 Peptidase family S41 CFE88_RS04105 PF17820 PDZ domain CFE88_RS04105 PF01471 Putative peptidoglycan binding domain CFE88_RS04120 PF04101 Glycosyltransferase family 28 C-terminal domain CFE88_RS04120 PF03033 Glycosyltransferase family 28 N-terminal domain CFE88_RS04125 PF01569 PAP2 superfamily CFE88_RS04135 PF00072 Response regulator receiver domain CFE88_RS04135 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS04140 PF18719 ArlS sensor domain CFE88_RS04140 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS04150 PF02779 Transketolase, pyrimidine binding domain CFE88_RS04150 PF16870 2-oxoglutarate dehydrogenase C-terminal CFE88_RS04150 PF00676 Dehydrogenase E1 component CFE88_RS04155 PF00364 Biotin-requiring enzyme CFE88_RS04155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFE88_RS04155 PF02817 e3 binding domain CFE88_RS04160 PF00005 ABC transporter CFE88_RS04185 PF07728 AAA domain (dynein-related subfamily) CFE88_RS04185 PF08406 CbbQ/NirQ/NorQ C-terminal CFE88_RS04190 PF00092 von Willebrand factor type A domain CFE88_RS04195 PF05525 Branched-chain amino acid transport protein CFE88_RS04200 PF05816 Toxic anion resistance protein (TelA) CFE88_RS04210 PF00708 Acylphosphatase CFE88_RS04220 PF00313 'Cold-shock' DNA-binding domain CFE88_RS04235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CFE88_RS04235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CFE88_RS04240 PF00842 Alanine racemase, C-terminal domain CFE88_RS04240 PF01168 Alanine racemase, N-terminal domain CFE88_RS04245 PF01546 Peptidase family M20/M25/M40 CFE88_RS04245 PF07687 Peptidase dimerisation domain CFE88_RS04250 PF14602 Hexapeptide repeat of succinyl-transferase CFE88_RS04250 PF00132 Bacterial transferase hexapeptide (six repeats) CFE88_RS04250 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CFE88_RS04255 PF05173 Dihydrodipicolinate reductase, C-terminus CFE88_RS04255 PF01113 Dihydrodipicolinate reductase, N-terminus CFE88_RS04260 PF00701 Dihydrodipicolinate synthetase family CFE88_RS04265 PF02774 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS04265 PF01118 Semialdehyde dehydrogenase, NAD binding domain CFE88_RS04270 PF13840 ACT domain CFE88_RS04270 PF00696 Amino acid kinase family CFE88_RS04270 PF01842 ACT domain CFE88_RS04275 PF00005 ABC transporter CFE88_RS04275 PF12848 ABC transporter CFE88_RS04280 PF13509 S1 domain CFE88_RS04280 PF17783 CvfB-like winged helix domain CFE88_RS04285 PF12849 PBP superfamily domain CFE88_RS04290 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS04295 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS04300 PF00005 ABC transporter CFE88_RS04305 PF01895 PhoU domain CFE88_RS04310 PF01432 Peptidase family M3 CFE88_RS04310 PF08439 Oligopeptidase F CFE88_RS04320 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS04325 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS04330 PF00005 ABC transporter CFE88_RS04335 PF00005 ABC transporter CFE88_RS04340 PF01497 Periplasmic binding protein CFE88_RS04350 PF02388 FemAB family CFE88_RS04355 PF02388 FemAB family CFE88_RS04370 PF00290 Tryptophan synthase alpha chain CFE88_RS04375 PF00291 Pyridoxal-phosphate dependent enzyme CFE88_RS04380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CFE88_RS04385 PF00218 Indole-3-glycerol phosphate synthase CFE88_RS04390 PF00591 Glycosyl transferase family, a/b domain CFE88_RS04395 PF00117 Glutamine amidotransferase class-I CFE88_RS04400 PF00425 chorismate binding enzyme CFE88_RS04400 PF04715 Anthranilate synthase component I, N terminal region CFE88_RS04405 PF01842 ACT domain CFE88_RS04405 PF02153 Prephenate dehydrogenase CFE88_RS04410 PF00817 impB/mucB/samB family CFE88_RS04410 PF11799 impB/mucB/samB family C-terminal domain CFE88_RS04410 PF11798 IMS family HHH motif CFE88_RS04415 PF01361 Tautomerase enzyme CFE88_RS04420 PF03816 Cell envelope-related transcriptional attenuator domain CFE88_RS04425 PF01625 Peptide methionine sulfoxide reductase CFE88_RS04430 PF09924 Uncharacterised conserved protein (DUF2156) CFE88_RS04430 PF03706 Lysylphosphatidylglycerol synthase TM region CFE88_RS04435 PF01594 AI-2E family transporter CFE88_RS04440 PF03123 CAT RNA binding domain CFE88_RS04440 PF00874 PRD domain CFE88_RS04445 PF01235 Sodium:alanine symporter family CFE88_RS04450 PF00521 DNA gyrase/topoisomerase IV, subunit A CFE88_RS04450 PF03989 DNA gyrase C-terminal domain, beta-propeller CFE88_RS04455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS04455 PF01751 Toprim domain CFE88_RS04455 PF00204 DNA gyrase B CFE88_RS04455 PF00986 DNA gyrase B subunit, carboxyl terminus CFE88_RS04460 PF02660 Glycerol-3-phosphate acyltransferase CFE88_RS04470 PF03061 Thioesterase superfamily CFE88_RS04475 PF00330 Aconitase family (aconitate hydratase) CFE88_RS04475 PF00694 Aconitase C-terminal domain CFE88_RS04480 PF02028 BCCT, betaine/carnitine/choline family transporter CFE88_RS04485 PF01741 Large-conductance mechanosensitive channel, MscL CFE88_RS04490 PF13476 AAA domain CFE88_RS04495 PF00149 Calcineurin-like phosphoesterase CFE88_RS04495 PF12320 Type 5 capsule protein repressor C-terminal domain CFE88_RS04500 PF07301 Protein of unknown function (DUF1453) CFE88_RS04510 PF02780 Transketolase, C-terminal domain CFE88_RS04510 PF00456 Transketolase, thiamine diphosphate binding domain CFE88_RS04510 PF02779 Transketolase, pyrimidine binding domain CFE88_RS04515 PF05979 Bacterial protein of unknown function (DUF896) CFE88_RS04525 PF01726 LexA DNA binding domain CFE88_RS04525 PF00717 Peptidase S24-like CFE88_RS04540 PF00478 IMP dehydrogenase / GMP reductase domain CFE88_RS04545 PF00253 Ribosomal protein S14p/S29e CFE88_RS04550 PF00471 Ribosomal protein L33 CFE88_RS04555 PF00199 Catalase CFE88_RS04555 PF06628 Catalase-related immune-responsive CFE88_RS04560 PF00324 Amino acid permease CFE88_RS04575 PF08544 GHMP kinases C terminal CFE88_RS04575 PF00288 GHMP kinases N terminal domain CFE88_RS04580 PF00291 Pyridoxal-phosphate dependent enzyme CFE88_RS04585 PF01842 ACT domain CFE88_RS04585 PF00742 Homoserine dehydrogenase CFE88_RS04585 PF03447 Homoserine dehydrogenase, NAD binding domain CFE88_RS04590 PF00696 Amino acid kinase family CFE88_RS04590 PF13840 ACT domain CFE88_RS04610 PF00565 Staphylococcal nuclease homologue CFE88_RS04620 PF00196 Bacterial regulatory proteins, luxR family CFE88_RS04620 PF00072 Response regulator receiver domain CFE88_RS04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS04625 PF07730 Histidine kinase CFE88_RS04625 PF05384 Sensor protein DegS CFE88_RS04635 PF00005 ABC transporter CFE88_RS04640 PF13396 Phospholipase_D-nuclease N-terminal CFE88_RS04640 PF13091 PLD-like domain CFE88_RS04700 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFE88_RS04700 PF13457 GW (Gly-Tryp) dipeptide domain CFE88_RS04705 PF05105 Bacteriophage holin family CFE88_RS04775 PF02368 Bacterial Ig-like domain (group 2) CFE88_RS04775 PF00754 F5/8 type C domain CFE88_RS04805 PF17288 Terminase RNAseH like domain CFE88_RS04805 PF04466 Phage terminase large subunit CFE88_RS04900 PF00120 Glutamine synthetase, catalytic domain CFE88_RS04900 PF03951 Glutamine synthetase, beta-Grasp domain CFE88_RS04905 PF13411 MerR HTH family regulatory protein CFE88_RS04910 PF06838 Methionine gamma-lyase CFE88_RS04915 PF16360 GTP-binding GTPase Middle Region CFE88_RS04915 PF13167 GTP-binding GTPase N-terminal CFE88_RS04915 PF01926 50S ribosome-binding GTPase CFE88_RS04920 PF00255 Glutathione peroxidase CFE88_RS04925 PF17209 Hfq protein CFE88_RS04935 PF00561 alpha/beta hydrolase fold CFE88_RS04940 PF01266 FAD dependent oxidoreductase CFE88_RS04940 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CFE88_RS04945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFE88_RS04945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFE88_RS04950 PF00230 Major intrinsic protein CFE88_RS04955 PF04309 Glycerol-3-phosphate responsive antiterminator CFE88_RS04960 PF01119 DNA mismatch repair protein, C-terminal domain CFE88_RS04960 PF08676 MutL C terminal dimerisation domain CFE88_RS04965 PF01624 MutS domain I CFE88_RS04965 PF05188 MutS domain II CFE88_RS04965 PF05192 MutS domain III CFE88_RS04965 PF00488 MutS domain V CFE88_RS04965 PF05190 MutS family domain IV CFE88_RS04975 PF06133 Control of competence regulator ComK, YlbF/YmcA CFE88_RS04980 PF00919 Uncharacterized protein family UPF0004 CFE88_RS04980 PF01938 TRAM domain CFE88_RS04980 PF04055 Radical SAM superfamily CFE88_RS04990 PF05908 Poly-gamma-glutamate hydrolase CFE88_RS04995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS05000 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CFE88_RS05000 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CFE88_RS05000 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CFE88_RS05005 PF13277 YmdB-like protein CFE88_RS05015 PF00013 KH domain CFE88_RS05015 PF01966 HD domain CFE88_RS05015 PF12072 Domain of unknown function (DUF3552) CFE88_RS05020 PF00154 recA bacterial DNA recombination protein CFE88_RS05025 PF18146 Damage-inducible protein CinA KH domain CFE88_RS05025 PF00994 Probable molybdopterin binding domain CFE88_RS05025 PF02464 Competence-damaged protein CFE88_RS05030 PF01066 CDP-alcohol phosphatidyltransferase CFE88_RS05040 PF11868 Protein of unknown function (DUF3388) CFE88_RS05050 PF05193 Peptidase M16 inactive domain CFE88_RS05050 PF00675 Insulinase (Peptidase family M16) CFE88_RS05055 PF05193 Peptidase M16 inactive domain CFE88_RS05060 PF00392 Bacterial regulatory proteins, gntR family CFE88_RS05060 PF07702 UTRA domain CFE88_RS05065 PF09397 Ftsk gamma domain CFE88_RS05065 PF17854 FtsK alpha domain CFE88_RS05065 PF01580 FtsK/SpoIIIE family CFE88_RS05070 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CFE88_RS05070 PF17770 Ribonuclease J C-terminal domain CFE88_RS05070 PF00753 Metallo-beta-lactamase superfamily CFE88_RS05075 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CFE88_RS05075 PF00013 KH domain CFE88_RS05075 PF00575 S1 RNA binding domain CFE88_RS05075 PF03725 3' exoribonuclease family, domain 2 CFE88_RS05075 PF01138 3' exoribonuclease family, domain 1 CFE88_RS05080 PF00312 Ribosomal protein S15 CFE88_RS05085 PF06574 FAD synthetase CFE88_RS05085 PF01687 Riboflavin kinase CFE88_RS05090 PF16198 tRNA pseudouridylate synthase B C-terminal domain CFE88_RS05090 PF01509 TruB family pseudouridylate synthase (N terminal domain) CFE88_RS05095 PF02033 Ribosome-binding factor A CFE88_RS05100 PF00009 Elongation factor Tu GTP binding domain CFE88_RS05100 PF11987 Translation-initiation factor 2 CFE88_RS05100 PF04760 Translation initiation factor IF-2, N-terminal region CFE88_RS05105 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CFE88_RS05110 PF04296 Protein of unknown function (DUF448) CFE88_RS05115 PF00575 S1 RNA binding domain CFE88_RS05115 PF08529 NusA N-terminal domain CFE88_RS05115 PF13184 NusA-like KH domain CFE88_RS05120 PF02576 RimP N-terminal domain CFE88_RS05120 PF17384 RimP C-terminal SH3 domain CFE88_RS05125 PF14480 DNA polymerase III polC-type N-terminus I CFE88_RS05125 PF00929 Exonuclease CFE88_RS05125 PF02811 PHP domain CFE88_RS05125 PF14579 Helix-hairpin-helix motif CFE88_RS05125 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CFE88_RS05125 PF07733 Bacterial DNA polymerase III alpha NTPase domain CFE88_RS05125 PF11490 DNA polymerase III polC-type N-terminus II CFE88_RS05130 PF04073 Aminoacyl-tRNA editing domain CFE88_RS05130 PF03129 Anticodon binding domain CFE88_RS05130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFE88_RS05135 PF13180 PDZ domain CFE88_RS05135 PF02163 Peptidase family M50 CFE88_RS05145 PF01255 Putative undecaprenyl diphosphate synthase CFE88_RS05150 PF01765 Ribosome recycling factor CFE88_RS05155 PF00696 Amino acid kinase family CFE88_RS05160 PF00889 Elongation factor TS CFE88_RS05165 PF00318 Ribosomal protein S2 CFE88_RS05170 PF06018 CodY GAF-like domain CFE88_RS05170 PF08222 CodY helix-turn-helix domain CFE88_RS05175 PF07724 AAA domain (Cdc48 subfamily) CFE88_RS05175 PF00004 ATPase family associated with various cellular activities (AAA) CFE88_RS05175 PF10431 C-terminal, D2-small domain, of ClpB protein CFE88_RS05180 PF00227 Proteasome subunit CFE88_RS05185 PF02899 Phage integrase, N-terminal SAM-like domain CFE88_RS05185 PF00589 Phage integrase family CFE88_RS05190 PF01134 Glucose inhibited division protein A CFE88_RS05195 PF01751 Toprim domain CFE88_RS05195 PF01396 Topoisomerase DNA binding C4 zinc finger CFE88_RS05195 PF01131 DNA topoisomerase CFE88_RS05200 PF02481 DNA recombination-mediator protein A CFE88_RS05205 PF00549 CoA-ligase CFE88_RS05205 PF02629 CoA binding domain CFE88_RS05210 PF08442 ATP-grasp domain CFE88_RS05210 PF00549 CoA-ligase CFE88_RS05215 PF01351 Ribonuclease HII CFE88_RS05220 PF01926 50S ribosome-binding GTPase CFE88_RS05230 PF09586 Bacterial membrane protein YfhO CFE88_RS05240 PF01245 Ribosomal protein L19 CFE88_RS05245 PF01746 tRNA (Guanine-1)-methyltransferase CFE88_RS05250 PF05239 PRC-barrel domain CFE88_RS05250 PF01782 RimM N-terminal domain CFE88_RS05255 PF00886 Ribosomal protein S16 CFE88_RS05260 PF00448 SRP54-type protein, GTPase domain CFE88_RS05260 PF02881 SRP54-type protein, helical bundle domain CFE88_RS05260 PF02978 Signal peptide binding domain CFE88_RS05265 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CFE88_RS05270 PF00448 SRP54-type protein, GTPase domain CFE88_RS05270 PF02881 SRP54-type protein, helical bundle domain CFE88_RS05275 PF06470 SMC proteins Flexible Hinge Domain CFE88_RS05275 PF02463 RecF/RecN/SMC N terminal domain CFE88_RS05280 PF00035 Double-stranded RNA binding motif CFE88_RS05280 PF14622 Ribonuclease-III-like CFE88_RS05285 PF00550 Phosphopantetheine attachment site CFE88_RS05295 PF00698 Acyl transferase domain CFE88_RS05300 PF02504 Fatty acid synthesis protein CFE88_RS05310 PF00270 DEAD/DEAH box helicase CFE88_RS05310 PF00271 Helicase conserved C-terminal domain CFE88_RS05310 PF17191 RecG wedge domain CFE88_RS05315 PF02734 DAK2 domain CFE88_RS05315 PF13684 Dihydroxyacetone kinase family CFE88_RS05320 PF03780 Asp23 family, cell envelope-related function CFE88_RS05325 PF00830 Ribosomal L28 family CFE88_RS05335 PF00834 Ribulose-phosphate 3 epimerase family CFE88_RS05340 PF03193 RsgA GTPase CFE88_RS05340 PF16745 RsgA N-terminal domain CFE88_RS05345 PF03793 PASTA domain CFE88_RS05345 PF00069 Protein kinase domain CFE88_RS05355 PF04055 Radical SAM superfamily CFE88_RS05360 PF01029 NusB family CFE88_RS05360 PF01189 16S rRNA methyltransferase RsmB/F CFE88_RS05365 PF02911 Formyl transferase, C-terminal domain CFE88_RS05365 PF00551 Formyl transferase CFE88_RS05370 PF01327 Polypeptide deformylase CFE88_RS05380 PF00271 Helicase conserved C-terminal domain CFE88_RS05380 PF04851 Type III restriction enzyme, res subunit CFE88_RS05380 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CFE88_RS05380 PF18074 Primosomal protein N C-terminal domain CFE88_RS05380 PF17764 3′ DNA-binding domain (3′BD) CFE88_RS05385 PF02441 Flavoprotein CFE88_RS05385 PF04127 DNA / pantothenate metabolism flavoprotein CFE88_RS05390 PF01192 RNA polymerase Rpb6 CFE88_RS05395 PF00625 Guanylate kinase CFE88_RS05400 PF05670 NFACT protein RNA binding domain CFE88_RS05415 PF00156 Phosphoribosyl transferase domain CFE88_RS05420 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFE88_RS05425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFE88_RS05425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFE88_RS05425 PF02142 MGS-like domain CFE88_RS05430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CFE88_RS05430 PF00117 Glutamine amidotransferase class-I CFE88_RS05435 PF01979 Amidohydrolase family CFE88_RS05440 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFE88_RS05440 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFE88_RS05445 PF00860 Permease family CFE88_RS05455 PF00156 Phosphoribosyl transferase domain CFE88_RS05460 PF00849 RNA pseudouridylate synthase CFE88_RS05460 PF01479 S4 domain CFE88_RS05465 PF01252 Signal peptidase (SPase) II CFE88_RS05470 PF01476 LysM domain CFE88_RS05470 PF05257 CHAP domain CFE88_RS05480 PF08264 Anticodon-binding domain of tRNA CFE88_RS05480 PF00133 tRNA synthetases class I (I, L, M and V) CFE88_RS05480 PF06827 Zinc finger found in FPG and IleRS CFE88_RS05485 PF05103 DivIVA protein CFE88_RS05495 PF02325 YGGT family CFE88_RS05500 PF04472 Cell division protein SepF CFE88_RS05505 PF01168 Alanine racemase, N-terminal domain CFE88_RS05510 PF02578 Multi-copper polyphenol oxidoreductase laccase CFE88_RS05515 PF00091 Tubulin/FtsZ family, GTPase domain CFE88_RS05515 PF12327 FtsZ family, C-terminal domain CFE88_RS05520 PF02491 SHS2 domain inserted in FTSA CFE88_RS05525 PF03799 Cell division protein FtsQ CFE88_RS05525 PF08478 POTRA domain, FtsQ-type CFE88_RS05530 PF02875 Mur ligase family, glutamate ligase domain CFE88_RS05530 PF08245 Mur ligase middle domain CFE88_RS05535 PF00953 Glycosyl transferase family 4 CFE88_RS05540 PF03793 PASTA domain CFE88_RS05540 PF00905 Penicillin binding protein transpeptidase domain CFE88_RS05540 PF03717 Penicillin-binding Protein dimerisation domain CFE88_RS05545 PF04977 Septum formation initiator CFE88_RS05550 PF01795 MraW methylase family CFE88_RS05555 PF02381 MraZ protein, putative antitoxin-like CFE88_RS05560 PF10079 Bacillithiol biosynthesis BshC CFE88_RS05565 PF13673 Acetyltransferase (GNAT) domain CFE88_RS05570 PF13419 Haloacid dehalogenase-like hydrolase CFE88_RS05575 PF05480 Staphylococcus haemolytic protein CFE88_RS05580 PF05480 Staphylococcus haemolytic protein CFE88_RS05605 PF01725 Ham1 family CFE88_RS05610 PF01177 Asp/Glu/Hydantoin racemase CFE88_RS05615 PF13183 4Fe-4S dicluster domain CFE88_RS05615 PF13085 2Fe-2S iron-sulfur cluster binding domain CFE88_RS05620 PF00890 FAD binding domain CFE88_RS05620 PF02910 Fumarate reductase flavoprotein C-term CFE88_RS05625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CFE88_RS05635 PF01541 GIY-YIG catalytic domain CFE88_RS05635 PF02151 UvrB/uvrC motif CFE88_RS05635 PF08459 UvrC Helix-hairpin-helix N-terminal CFE88_RS05640 PF00085 Thioredoxin CFE88_RS05645 PF01713 Smr domain CFE88_RS05645 PF00488 MutS domain V CFE88_RS05650 PF02811 PHP domain CFE88_RS05650 PF14791 DNA polymerase beta thumb CFE88_RS05650 PF14716 Helix-hairpin-helix domain CFE88_RS05660 PF05164 Cell division protein ZapA CFE88_RS05665 PF01351 Ribonuclease HII CFE88_RS05665 PF11858 Domain of unknown function (DUF3378) CFE88_RS05670 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CFE88_RS05670 PF01588 Putative tRNA binding domain CFE88_RS05670 PF03484 tRNA synthetase B5 domain CFE88_RS05670 PF03483 B3/4 domain CFE88_RS05670 PF03147 Ferredoxin-fold anticodon binding domain CFE88_RS05675 PF01409 tRNA synthetases class II core domain (F) CFE88_RS05675 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CFE88_RS05680 PF00588 SpoU rRNA Methylase family CFE88_RS05680 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFE88_RS05690 PF00746 LPXTG cell wall anchor motif CFE88_RS05690 PF07501 G5 domain CFE88_RS05690 PF17041 E domain CFE88_RS05690 PF04650 YSIRK type signal peptide CFE88_RS05695 PF01783 Ribosomal L32p protein family CFE88_RS05710 PF05636 HIGH Nucleotidyl Transferase CFE88_RS05715 PF01467 Cytidylyltransferase-like CFE88_RS05730 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CFE88_RS05740 PF03009 Glycerophosphoryl diester phosphodiesterase family CFE88_RS05745 PF06133 Control of competence regulator ComK, YlbF/YmcA CFE88_RS05750 PF14504 CAP-associated N-terminal CFE88_RS05750 PF00188 Cysteine-rich secretory protein family CFE88_RS05760 PF01040 UbiA prenyltransferase family CFE88_RS05765 PF02628 Cytochrome oxidase assembly protein CFE88_RS05770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CFE88_RS05770 PF00682 HMGL-like CFE88_RS05770 PF02436 Conserved carboxylase domain CFE88_RS05770 PF00364 Biotin-requiring enzyme CFE88_RS05770 PF02785 Biotin carboxylase C-terminal domain CFE88_RS05770 PF00289 Biotin carboxylase, N-terminal domain CFE88_RS05775 PF01098 Cell cycle protein CFE88_RS05780 PF07408 Protein of unknown function (DUF1507) CFE88_RS05790 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) CFE88_RS05795 PF14492 Elongation Factor G, domain II CFE88_RS05795 PF00009 Elongation factor Tu GTP binding domain CFE88_RS05795 PF03144 Elongation factor Tu domain 2 CFE88_RS05795 PF00679 Elongation factor G C-terminus CFE88_RS05805 PF00459 Inositol monophosphatase family CFE88_RS05810 PF06335 Protein of unknown function (DUF1054) CFE88_RS05815 PF01566 Natural resistance-associated macrophage protein CFE88_RS05830 PF13416 Bacterial extracellular solute-binding protein CFE88_RS05840 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS05845 PF00005 ABC transporter CFE88_RS05845 PF08402 TOBE domain CFE88_RS05855 PF05256 Uncharacterised protein family (UPF0223) CFE88_RS05860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS05865 PF00364 Biotin-requiring enzyme CFE88_RS05865 PF02817 e3 binding domain CFE88_RS05865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFE88_RS05870 PF02779 Transketolase, pyrimidine binding domain CFE88_RS05870 PF02780 Transketolase, C-terminal domain CFE88_RS05875 PF00676 Dehydrogenase E1 component CFE88_RS05885 PF01327 Polypeptide deformylase CFE88_RS05900 PF07288 Protein of unknown function (DUF1447) CFE88_RS05905 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CFE88_RS05905 PF00753 Metallo-beta-lactamase superfamily CFE88_RS05905 PF17770 Ribonuclease J C-terminal domain CFE88_RS05910 PF02254 TrkA-N domain CFE88_RS05910 PF02080 TrkA-C domain CFE88_RS05915 PF02322 Cytochrome bd terminal oxidase subunit II CFE88_RS05920 PF01654 Cytochrome bd terminal oxidase subunit I CFE88_RS05930 PF02896 PEP-utilising enzyme, TIM barrel domain CFE88_RS05930 PF00391 PEP-utilising enzyme, mobile domain CFE88_RS05930 PF05524 PEP-utilising enzyme, N-terminal CFE88_RS05935 PF00381 PTS HPr component phosphorylation site CFE88_RS05945 PF17785 PUA-like domain CFE88_RS05945 PF10672 S-adenosylmethionine-dependent methyltransferase CFE88_RS05960 PF06100 MCRA family CFE88_RS05970 PF00005 ABC transporter CFE88_RS05975 PF02361 Cobalt transport protein CFE88_RS05980 PF02843 Phosphoribosylglycinamide synthetase, C domain CFE88_RS05980 PF02844 Phosphoribosylglycinamide synthetase, N domain CFE88_RS05980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFE88_RS05985 PF01808 AICARFT/IMPCHase bienzyme CFE88_RS05985 PF02142 MGS-like domain CFE88_RS05990 PF00551 Formyl transferase CFE88_RS05995 PF00586 AIR synthase related protein, N-terminal domain CFE88_RS05995 PF02769 AIR synthase related protein, C-terminal domain CFE88_RS06000 PF13537 Glutamine amidotransferase domain CFE88_RS06000 PF00156 Phosphoribosyl transferase domain CFE88_RS06005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CFE88_RS06005 PF00586 AIR synthase related protein, N-terminal domain CFE88_RS06005 PF02769 AIR synthase related protein, C-terminal domain CFE88_RS06015 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CFE88_RS06020 PF01259 SAICAR synthetase CFE88_RS06025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS06025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CFE88_RS06025 PF02222 ATP-grasp domain CFE88_RS06030 PF00731 AIR carboxylase CFE88_RS06035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFE88_RS06035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFE88_RS06045 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CFE88_RS06050 PF00115 Cytochrome C and Quinol oxidase polypeptide I CFE88_RS06055 PF00510 Cytochrome c oxidase subunit III CFE88_RS06060 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CFE88_RS06065 PF01156 Inosine-uridine preferring nucleoside hydrolase CFE88_RS06070 PF00144 Beta-lactamase CFE88_RS06075 PF03816 Cell envelope-related transcriptional attenuator domain CFE88_RS06080 PF10804 Protein of unknown function (DUF2538) CFE88_RS06085 PF13673 Acetyltransferase (GNAT) domain CFE88_RS06090 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFE88_RS06090 PF13457 GW (Gly-Tryp) dipeptide domain CFE88_RS06095 PF01047 MarR family CFE88_RS06100 PF01757 Acyltransferase family CFE88_RS06105 PF00155 Aminotransferase class I and II CFE88_RS06110 PF01797 Transposase IS200 like CFE88_RS06120 PF00378 Enoyl-CoA hydratase/isomerase CFE88_RS06125 PF12697 Alpha/beta hydrolase family CFE88_RS06130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFE88_RS06130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS06130 PF16582 Middle domain of thiamine pyrophosphate CFE88_RS06135 PF00425 chorismate binding enzyme CFE88_RS06145 PF01040 UbiA prenyltransferase family CFE88_RS06155 PF13302 Acetyltransferase (GNAT) domain CFE88_RS06165 PF05154 TM2 domain CFE88_RS06180 PF01810 LysE type translocator CFE88_RS06200 PF01076 Plasmid recombination enzyme CFE88_RS06205 PF01076 Plasmid recombination enzyme CFE88_RS06230 PF03099 Biotin/lipoate A/B protein ligase family CFE88_RS06230 PF10437 Bacterial lipoate protein ligase C-terminus CFE88_RS06235 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) CFE88_RS06245 PF02872 5'-nucleotidase, C-terminal domain CFE88_RS06245 PF00149 Calcineurin-like phosphoesterase CFE88_RS06250 PF02386 Cation transport protein CFE88_RS06255 PF13180 PDZ domain CFE88_RS06260 PF03741 Integral membrane protein TerC family CFE88_RS06265 PF03144 Elongation factor Tu domain 2 CFE88_RS06265 PF00009 Elongation factor Tu GTP binding domain CFE88_RS06265 PF16658 Class II release factor RF3, C-terminal domain CFE88_RS06275 PF08245 Mur ligase middle domain CFE88_RS06275 PF01225 Mur ligase family, catalytic domain CFE88_RS06275 PF02875 Mur ligase family, glutamate ligase domain CFE88_RS06280 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CFE88_RS06280 PF04101 Glycosyltransferase family 28 C-terminal domain CFE88_RS06285 PF07690 Major Facilitator Superfamily CFE88_RS06295 PF00756 Putative esterase CFE88_RS06300 PF01594 AI-2E family transporter CFE88_RS06420 PF17755 UvrA DNA-binding domain CFE88_RS06420 PF17755 UvrA DNA-binding domain CFE88_RS06420 PF17760 UvrA interaction domain CFE88_RS06420 PF17760 UvrA interaction domain CFE88_RS06430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFE88_RS06430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFE88_RS06435 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFE88_RS06435 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFE88_RS06440 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFE88_RS06440 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFE88_RS06445 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CFE88_RS06445 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CFE88_RS06495 PF14449 Pre-toxin TG CFE88_RS06505 PF04634 Protein of unknown function, DUF600 CFE88_RS06520 PF00999 Sodium/hydrogen exchanger family CFE88_RS06520 PF02080 TrkA-C domain CFE88_RS06520 PF02254 TrkA-N domain CFE88_RS06525 PF03448 MgtE intracellular N domain CFE88_RS06525 PF01769 Divalent cation transporter CFE88_RS06525 PF00571 CBS domain CFE88_RS06530 PF00849 RNA pseudouridylate synthase CFE88_RS06535 PF01513 ATP-NAD kinase CFE88_RS06540 PF04607 Region found in RelA / SpoT proteins CFE88_RS06555 PF01152 Bacterial-like globin CFE88_RS06565 PF01797 Transposase IS200 like CFE88_RS06570 PF01797 Transposase IS200 like CFE88_RS06575 PF01432 Peptidase family M3 CFE88_RS06575 PF08439 Oligopeptidase F CFE88_RS06585 PF05389 Negative regulator of genetic competence (MecA) CFE88_RS06590 PF03960 ArsC family CFE88_RS06595 PF00579 tRNA synthetases class I (W and Y) CFE88_RS06600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFE88_RS06605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFE88_RS06605 PF00005 ABC transporter CFE88_RS06610 PF00005 ABC transporter CFE88_RS06610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CFE88_RS06615 PF12911 N-terminal TM domain of oligopeptide transport permease C CFE88_RS06615 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS06620 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS06630 PF02801 Beta-ketoacyl synthase, C-terminal domain CFE88_RS06630 PF00109 Beta-ketoacyl synthase, N-terminal domain CFE88_RS06635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CFE88_RS06635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFE88_RS06645 PF07724 AAA domain (Cdc48 subfamily) CFE88_RS06645 PF10431 C-terminal, D2-small domain, of ClpB protein CFE88_RS06645 PF00004 ATPase family associated with various cellular activities (AAA) CFE88_RS06645 PF02861 Clp amino terminal domain, pathogenicity island component CFE88_RS06645 PF17871 AAA lid domain CFE88_RS06650 PF01757 Acyltransferase family CFE88_RS06655 PF01883 Iron-sulfur cluster assembly protein CFE88_RS06665 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS06665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS06670 PF07457 Protein of unknown function (DUF1516) CFE88_RS06675 PF01557 Fumarylacetoacetate (FAA) hydrolase family CFE88_RS06680 PF12705 PD-(D/E)XK nuclease superfamily CFE88_RS06680 PF00580 UvrD/REP helicase N-terminal domain CFE88_RS06680 PF13361 UvrD-like helicase C-terminal domain CFE88_RS06685 PF13361 UvrD-like helicase C-terminal domain CFE88_RS06685 PF12705 PD-(D/E)XK nuclease superfamily CFE88_RS06690 PF10502 Signal peptidase, peptidase S26 CFE88_RS06695 PF10502 Signal peptidase, peptidase S26 CFE88_RS06700 PF09335 SNARE associated Golgi protein CFE88_RS06710 PF00342 Phosphoglucose isomerase CFE88_RS06715 PF00764 Arginosuccinate synthase CFE88_RS06720 PF00206 Lyase CFE88_RS06720 PF14698 Argininosuccinate lyase C-terminal CFE88_RS06725 PF03009 Glycerophosphoryl diester phosphodiesterase family CFE88_RS06730 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFE88_RS06730 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CFE88_RS06735 PF00202 Aminotransferase class-III CFE88_RS06740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CFE88_RS06745 PF00575 S1 RNA binding domain CFE88_RS06750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CFE88_RS06760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFE88_RS06760 PF00361 Proton-conducting membrane transporter CFE88_RS06760 PF13244 Domain of unknown function (DUF4040) CFE88_RS06765 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CFE88_RS06770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFE88_RS06775 PF00361 Proton-conducting membrane transporter CFE88_RS06780 PF01899 Na+/H+ ion antiporter subunit CFE88_RS06785 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CFE88_RS06790 PF03334 Na+/H+ antiporter subunit CFE88_RS06800 PF03061 Thioesterase superfamily CFE88_RS06805 PF03553 Na+/H+ antiporter family CFE88_RS06805 PF13726 Na+-H+ antiporter family CFE88_RS06810 PF02789 Cytosol aminopeptidase family, N-terminal domain CFE88_RS06810 PF00883 Cytosol aminopeptidase family, catalytic domain CFE88_RS06815 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS06820 PF01521 Iron-sulphur cluster biosynthesis CFE88_RS06825 PF07293 Protein of unknown function (DUF1450) CFE88_RS06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS06835 PF07315 Protein of unknown function (DUF1462) CFE88_RS06840 PF01106 NifU-like domain CFE88_RS06845 PF04914 DltD protein CFE88_RS06850 PF00550 Phosphopantetheine attachment site CFE88_RS06855 PF03062 MBOAT, membrane-bound O-acyltransferase family CFE88_RS06860 PF00501 AMP-binding enzyme CFE88_RS06860 PF13193 AMP-binding enzyme C-terminal domain CFE88_RS06870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS06870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS06875 PF13344 Haloacid dehalogenase-like hydrolase CFE88_RS06880 PF01934 Protein of unknown function DUF86 CFE88_RS06895 PF06265 Protein of unknown function (DUF1027) CFE88_RS06900 PF04055 Radical SAM superfamily CFE88_RS06900 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CFE88_RS06905 PF02872 5'-nucleotidase, C-terminal domain CFE88_RS06910 PF01925 Sulfite exporter TauE/SafE CFE88_RS06915 PF01904 Protein of unknown function DUF72 CFE88_RS06930 PF03471 Transporter associated domain CFE88_RS06930 PF00571 CBS domain CFE88_RS06930 PF01595 Cyclin M transmembrane N-terminal domain CFE88_RS06940 PF01458 Uncharacterized protein family (UPF0051) CFE88_RS06945 PF01592 NifU-like N terminal domain CFE88_RS06950 PF00266 Aminotransferase class-V CFE88_RS06955 PF01458 Uncharacterized protein family (UPF0051) CFE88_RS06960 PF00005 ABC transporter CFE88_RS06970 PF05532 CsbD-like CFE88_RS06980 PF03180 NLPA lipoprotein CFE88_RS06985 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS06990 PF09383 NIL domain CFE88_RS06990 PF00005 ABC transporter CFE88_RS07000 PF01751 Toprim domain CFE88_RS07010 PF01597 Glycine cleavage H-protein CFE88_RS07015 PF03960 ArsC family CFE88_RS07020 PF00085 Thioredoxin CFE88_RS07030 PF01487 Type I 3-dehydroquinase CFE88_RS07035 PF02566 OsmC-like protein CFE88_RS07050 PF00300 Histidine phosphatase superfamily (branch 1) CFE88_RS07085 PF05908 Poly-gamma-glutamate hydrolase CFE88_RS07100 PF00313 'Cold-shock' DNA-binding domain CFE88_RS07105 PF01545 Cation efflux family CFE88_RS07105 PF16916 Dimerisation domain of Zinc Transporter CFE88_RS07135 PF02386 Cation transport protein CFE88_RS07175 PF03592 Terminase small subunit CFE88_RS07175 PF10668 Phage terminase small subunit CFE88_RS07240 PF12167 Arm DNA-binding domain CFE88_RS07240 PF00589 Phage integrase family CFE88_RS07250 PF01668 SmpB protein CFE88_RS07255 PF00575 S1 RNA binding domain CFE88_RS07255 PF17876 Cold shock domain CFE88_RS07255 PF08206 Ribonuclease B OB domain CFE88_RS07255 PF00773 RNB domain CFE88_RS07260 PF12146 Serine aminopeptidase, S33 CFE88_RS07265 PF03840 Preprotein translocase SecG subunit CFE88_RS07275 PF00113 Enolase, C-terminal TIM barrel domain CFE88_RS07275 PF03952 Enolase, N-terminal domain CFE88_RS07280 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CFE88_RS07280 PF01676 Metalloenzyme superfamily CFE88_RS07285 PF00121 Triosephosphate isomerase CFE88_RS07290 PF00162 Phosphoglycerate kinase CFE88_RS07295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFE88_RS07295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CFE88_RS07300 PF04198 Putative sugar-binding domain CFE88_RS07315 PF01370 NAD dependent epimerase/dehydratase family CFE88_RS07315 PF08338 Domain of unknown function (DUF1731) CFE88_RS07330 PF00574 Clp protease CFE88_RS07340 PF02650 WhiA C-terminal HTH domain CFE88_RS07340 PF10298 WhiA N-terminal LAGLIDADG-like domain CFE88_RS07340 PF14527 WhiA LAGLIDADG-like domain CFE88_RS07345 PF01933 Uncharacterised protein family UPF0052 CFE88_RS07350 PF03668 P-loop ATPase protein family CFE88_RS07355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS07365 PF14602 Hexapeptide repeat of succinyl-transferase CFE88_RS07370 PF01790 Prolipoprotein diacylglyceryl transferase CFE88_RS07375 PF02603 HPr Serine kinase N terminus CFE88_RS07375 PF07475 HPr Serine kinase C-terminal domain CFE88_RS07380 PF00005 ABC transporter CFE88_RS07380 PF17755 UvrA DNA-binding domain CFE88_RS07380 PF17760 UvrA interaction domain CFE88_RS07385 PF00271 Helicase conserved C-terminal domain CFE88_RS07385 PF12344 Ultra-violet resistance protein B CFE88_RS07385 PF17757 UvrB interaction domain CFE88_RS07385 PF02151 UvrB/uvrC motif CFE88_RS07385 PF04851 Type III restriction enzyme, res subunit CFE88_RS07405 PF01476 LysM domain CFE88_RS07405 PF05257 CHAP domain CFE88_RS07420 PF01043 SecA preprotein cross-linking domain CFE88_RS07420 PF02810 SEC-C motif CFE88_RS07420 PF07516 SecA Wing and Scaffold domain CFE88_RS07420 PF07517 SecA DEAD-like domain CFE88_RS07425 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CFE88_RS07425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CFE88_RS07435 PF00271 Helicase conserved C-terminal domain CFE88_RS07435 PF04851 Type III restriction enzyme, res subunit CFE88_RS07440 PF02645 Uncharacterised protein, DegV family COG1307 CFE88_RS07445 PF09186 Domain of unknown function (DUF1949) CFE88_RS07445 PF01205 Uncharacterized protein family UPF0029 CFE88_RS07450 PF00953 Glycosyl transferase family 4 CFE88_RS07455 PF07694 5TMR of 5TMR-LYT CFE88_RS07455 PF00990 Diguanylate cyclase, GGDEF domain CFE88_RS07470 PF01546 Peptidase family M20/M25/M40 CFE88_RS07470 PF07687 Peptidase dimerisation domain CFE88_RS07475 PF02595 Glycerate kinase family CFE88_RS07495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CFE88_RS07495 PF01565 FAD binding domain CFE88_RS07510 PF00005 ABC transporter CFE88_RS07515 PF01032 FecCD transport family CFE88_RS07520 PF01032 FecCD transport family CFE88_RS07530 PF00268 Ribonucleotide reductase, small chain CFE88_RS07535 PF08343 Ribonucleotide reductase N-terminal CFE88_RS07535 PF00317 Ribonucleotide reductase, all-alpha domain CFE88_RS07535 PF02867 Ribonucleotide reductase, barrel domain CFE88_RS07540 PF07972 NrdI Flavodoxin like CFE88_RS07550 PF14489 QueF-like protein CFE88_RS07555 PF00854 POT family CFE88_RS07560 PF00781 Diacylglycerol kinase catalytic domain CFE88_RS07565 PF00465 Iron-containing alcohol dehydrogenase CFE88_RS07565 PF00171 Aldehyde dehydrogenase family CFE88_RS07570 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) CFE88_RS07580 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS07585 PF00571 CBS domain CFE88_RS07585 PF00005 ABC transporter CFE88_RS07590 PF00271 Helicase conserved C-terminal domain CFE88_RS07590 PF09382 RQC domain CFE88_RS07590 PF00270 DEAD/DEAH box helicase CFE88_RS07590 PF16124 RecQ zinc-binding CFE88_RS07590 PF00570 HRDC domain CFE88_RS07595 PF16326 ABC transporter C-terminal domain CFE88_RS07595 PF12848 ABC transporter CFE88_RS07595 PF00005 ABC transporter CFE88_RS07600 PF02535 ZIP Zinc transporter CFE88_RS07610 PF00884 Sulfatase CFE88_RS07620 PF02682 Carboxyltransferase domain, subdomain C and D CFE88_RS07635 PF00425 chorismate binding enzyme CFE88_RS07635 PF04715 Anthranilate synthase component I, N terminal region CFE88_RS07640 PF00117 Glutamine amidotransferase class-I CFE88_RS07645 PF06508 Queuosine biosynthesis protein QueC CFE88_RS07650 PF01242 6-pyruvoyl tetrahydropterin synthase CFE88_RS07655 PF04055 Radical SAM superfamily CFE88_RS07680 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS07680 PF00072 Response regulator receiver domain CFE88_RS07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS07685 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS07690 PF00535 Glycosyl transferase family 2 CFE88_RS07695 PF00248 Aldo/keto reductase family CFE88_RS07700 PF00571 CBS domain CFE88_RS07700 PF03471 Transporter associated domain CFE88_RS07700 PF01595 Cyclin M transmembrane N-terminal domain CFE88_RS07705 PF01979 Amidohydrolase family CFE88_RS07710 PF13610 DDE domain CFE88_RS07715 PF01638 HxlR-like helix-turn-helix CFE88_RS07720 PF04650 YSIRK type signal peptide CFE88_RS07720 PF17041 E domain CFE88_RS07720 PF17041 E domain CFE88_RS07720 PF04650 YSIRK type signal peptide CFE88_RS07720 PF07501 G5 domain CFE88_RS07720 PF00746 LPXTG cell wall anchor motif CFE88_RS07720 PF00746 LPXTG cell wall anchor motif CFE88_RS07720 PF07501 G5 domain CFE88_RS07730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CFE88_RS07730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFE88_RS07735 PF00294 pfkB family carbohydrate kinase CFE88_RS07740 PF00455 DeoR C terminal sensor domain CFE88_RS07740 PF08220 DeoR-like helix-turn-helix domain CFE88_RS07750 PF04073 Aminoacyl-tRNA editing domain CFE88_RS07760 PF07690 Major Facilitator Superfamily CFE88_RS07775 PF03441 FAD binding domain of DNA photolyase CFE88_RS07775 PF00875 DNA photolyase CFE88_RS07780 PF00939 Sodium:sulfate symporter transmembrane region CFE88_RS07785 PF00056 lactate/malate dehydrogenase, NAD binding domain CFE88_RS07785 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFE88_RS07795 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS07795 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFE88_RS07805 PF01047 MarR family CFE88_RS07810 PF00005 ABC transporter CFE88_RS07810 PF00664 ABC transporter transmembrane region CFE88_RS07815 PF00664 ABC transporter transmembrane region CFE88_RS07815 PF00005 ABC transporter CFE88_RS07820 PF02673 Bacitracin resistance protein BacA CFE88_RS07835 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CFE88_RS07840 PF03641 Possible lysine decarboxylase CFE88_RS07865 PF04306 Protein of unknown function (DUF456) CFE88_RS07870 PF07690 Major Facilitator Superfamily CFE88_RS07875 PF03466 LysR substrate binding domain CFE88_RS07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFE88_RS07890 PF00042 Globin CFE88_RS07890 PF00175 Oxidoreductase NAD-binding domain CFE88_RS07890 PF00970 Oxidoreductase FAD-binding domain CFE88_RS07895 PF01814 Hemerythrin HHE cation binding domain CFE88_RS07895 PF04405 Domain of Unknown function (DUF542) CFE88_RS07905 PF01709 Transcriptional regulator CFE88_RS07925 PF01476 LysM domain CFE88_RS07925 PF05257 CHAP domain CFE88_RS07930 PF01384 Phosphate transporter family CFE88_RS07935 PF01865 Protein of unknown function DUF47 CFE88_RS07940 PF02687 FtsX-like permease family CFE88_RS07945 PF00005 ABC transporter CFE88_RS07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS07955 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS07955 PF00072 Response regulator receiver domain CFE88_RS07960 PF01370 NAD dependent epimerase/dehydratase family CFE88_RS07985 PF00005 ABC transporter CFE88_RS07990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CFE88_RS07990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CFE88_RS07995 PF07662 Na+ dependent nucleoside transporter C-terminus CFE88_RS07995 PF01773 Na+ dependent nucleoside transporter N-terminus CFE88_RS08000 PF00005 ABC transporter CFE88_RS08000 PF00664 ABC transporter transmembrane region CFE88_RS08005 PF01467 Cytidylyltransferase-like CFE88_RS08010 PF00535 Glycosyl transferase family 2 CFE88_RS08015 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS08020 PF01061 ABC-2 type transporter CFE88_RS08025 PF00005 ABC transporter CFE88_RS08030 PF03808 Glycosyl transferase WecB/TagA/CpsF family CFE88_RS08040 PF18357 Diphteria toxin repressor SH3 domain CFE88_RS08040 PF02742 Iron dependent repressor, metal binding and dimerisation domain CFE88_RS08040 PF01325 Iron dependent repressor, N-terminal DNA binding domain CFE88_RS08045 PF00005 ABC transporter CFE88_RS08050 PF00950 ABC 3 transport family CFE88_RS08055 PF01297 Zinc-uptake complex component A periplasmic CFE88_RS08060 PF00999 Sodium/hydrogen exchanger family CFE88_RS08065 PF03334 Na+/H+ antiporter subunit CFE88_RS08070 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CFE88_RS08075 PF01899 Na+/H+ ion antiporter subunit CFE88_RS08080 PF00361 Proton-conducting membrane transporter CFE88_RS08085 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CFE88_RS08090 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CFE88_RS08095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFE88_RS08095 PF00361 Proton-conducting membrane transporter CFE88_RS08095 PF13244 Domain of unknown function (DUF4040) CFE88_RS08135 PF00561 alpha/beta hydrolase fold CFE88_RS08155 PF13419 Haloacid dehalogenase-like hydrolase CFE88_RS08160 PF01032 FecCD transport family CFE88_RS08165 PF01497 Periplasmic binding protein CFE88_RS08175 PF07739 TipAS antibiotic-recognition domain CFE88_RS08175 PF13411 MerR HTH family regulatory protein CFE88_RS08180 PF00633 Helix-hairpin-helix motif CFE88_RS08180 PF00730 HhH-GPD superfamily base excision DNA repair protein CFE88_RS08180 PF10576 Iron-sulfur binding domain of endonuclease III CFE88_RS08185 PF00750 tRNA synthetases class I (R) CFE88_RS08185 PF05746 DALR anticodon binding domain CFE88_RS08185 PF03485 Arginyl tRNA synthetase N terminal domain CFE88_RS08205 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS08205 PF00107 Zinc-binding dehydrogenase CFE88_RS08210 PF09861 Lactate racemase N-terminal domain CFE88_RS08215 PF02540 NAD synthase CFE88_RS08220 PF00731 AIR carboxylase CFE88_RS08225 PF01969 Protein of unknown function DUF111 CFE88_RS08230 PF08741 YwhD family CFE88_RS08235 PF01966 HD domain CFE88_RS08245 PF13610 DDE domain CFE88_RS08255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CFE88_RS08260 PF03176 MMPL family CFE88_RS08265 PF00248 Aldo/keto reductase family CFE88_RS08275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS08275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS08280 PF07293 Protein of unknown function (DUF1450) CFE88_RS08285 PF00288 GHMP kinases N terminal domain CFE88_RS08285 PF08544 GHMP kinases C terminal CFE88_RS08295 PF00288 GHMP kinases N terminal domain CFE88_RS08300 PF03099 Biotin/lipoate A/B protein ligase family CFE88_RS08305 PF01515 Phosphate acetyl/butaryl transferase CFE88_RS08310 PF06778 Chlorite dismutase CFE88_RS08325 PF13520 Amino acid permease CFE88_RS08330 PF04241 Protein of unknown function (DUF423) CFE88_RS08340 PF03167 Uracil DNA glycosylase superfamily CFE88_RS08350 PF08543 Phosphomethylpyrimidine kinase CFE88_RS08355 PF17412 Family of unknown function CFE88_RS08360 PF07690 Major Facilitator Superfamily CFE88_RS08375 PF02803 Thiolase, C-terminal domain CFE88_RS08375 PF00108 Thiolase, N-terminal domain CFE88_RS08380 PF00501 AMP-binding enzyme CFE88_RS08390 PF01380 SIS domain CFE88_RS08395 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CFE88_RS08400 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CFE88_RS08410 PF02585 GlcNAc-PI de-N-acetylase CFE88_RS08415 PF02649 Type I GTP cyclohydrolase folE2 CFE88_RS08420 PF01022 Bacterial regulatory protein, arsR family CFE88_RS08425 PF02040 Arsenical pump membrane protein CFE88_RS08430 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFE88_RS08440 PF17961 Bacterial Ig domain CFE88_RS08440 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CFE88_RS08440 PF17210 SdrD B-like domain CFE88_RS08440 PF00746 LPXTG cell wall anchor motif CFE88_RS08440 PF04650 YSIRK type signal peptide CFE88_RS08445 PF03358 NADPH-dependent FMN reductase CFE88_RS08455 PF14437 MafB19-like deaminase CFE88_RS08460 PF01712 Deoxynucleoside kinase CFE88_RS08465 PF01712 Deoxynucleoside kinase CFE88_RS08475 PF00296 Luciferase-like monooxygenase CFE88_RS08485 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS08490 PF00107 Zinc-binding dehydrogenase CFE88_RS08490 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS08495 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CFE88_RS08500 PF01063 Amino-transferase class IV CFE88_RS08505 PF01370 NAD dependent epimerase/dehydratase family CFE88_RS08515 PF02423 Ornithine cyclodeaminase/mu-crystallin family CFE88_RS08525 PF07687 Peptidase dimerisation domain CFE88_RS08525 PF01546 Peptidase family M20/M25/M40 CFE88_RS08530 PF03144 Elongation factor Tu domain 2 CFE88_RS08530 PF00009 Elongation factor Tu GTP binding domain CFE88_RS08530 PF03143 Elongation factor Tu C-terminal domain CFE88_RS08535 PF14492 Elongation Factor G, domain II CFE88_RS08535 PF03764 Elongation factor G, domain IV CFE88_RS08535 PF00009 Elongation factor Tu GTP binding domain CFE88_RS08535 PF00679 Elongation factor G C-terminus CFE88_RS08535 PF03144 Elongation factor Tu domain 2 CFE88_RS08540 PF00177 Ribosomal protein S7p/S5e CFE88_RS08545 PF00164 Ribosomal protein S12/S23 CFE88_RS08550 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CFE88_RS08555 PF04998 RNA polymerase Rpb1, domain 5 CFE88_RS08555 PF05000 RNA polymerase Rpb1, domain 4 CFE88_RS08555 PF04997 RNA polymerase Rpb1, domain 1 CFE88_RS08555 PF04983 RNA polymerase Rpb1, domain 3 CFE88_RS08555 PF00623 RNA polymerase Rpb1, domain 2 CFE88_RS08560 PF04560 RNA polymerase Rpb2, domain 7 CFE88_RS08560 PF04561 RNA polymerase Rpb2, domain 2 CFE88_RS08560 PF04565 RNA polymerase Rpb2, domain 3 CFE88_RS08560 PF10385 RNA polymerase beta subunit external 1 domain CFE88_RS08560 PF00562 RNA polymerase Rpb2, domain 6 CFE88_RS08560 PF04563 RNA polymerase beta subunit CFE88_RS08565 PF05175 Methyltransferase small domain CFE88_RS08570 PF16320 Ribosomal protein L7/L12 dimerisation domain CFE88_RS08570 PF00542 Ribosomal protein L7/L12 C-terminal domain CFE88_RS08575 PF00466 Ribosomal protein L10 CFE88_RS08585 PF00687 Ribosomal protein L1p/L10e family CFE88_RS08590 PF00298 Ribosomal protein L11, RNA binding domain CFE88_RS08590 PF03946 Ribosomal protein L11, N-terminal domain CFE88_RS08595 PF02357 Transcription termination factor nusG CFE88_RS08600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CFE88_RS08605 PF00471 Ribosomal protein L33 CFE88_RS08615 PF05991 YacP-like NYN domain CFE88_RS08620 PF00588 SpoU rRNA Methylase family CFE88_RS08620 PF08032 RNA 2'-O ribose methyltransferase substrate binding CFE88_RS08625 PF00636 Ribonuclease III domain CFE88_RS08630 PF09190 DALR domain CFE88_RS08630 PF01406 tRNA synthetases class I (C) catalytic domain CFE88_RS08635 PF00132 Bacterial transferase hexapeptide (six repeats) CFE88_RS08640 PF00749 tRNA synthetases class I (E and Q), catalytic domain CFE88_RS08650 PF18073 Rubredoxin metal binding domain CFE88_RS08655 PF00004 ATPase family associated with various cellular activities (AAA) CFE88_RS08655 PF02861 Clp amino terminal domain, pathogenicity island component CFE88_RS08655 PF10431 C-terminal, D2-small domain, of ClpB protein CFE88_RS08655 PF07724 AAA domain (Cdc48 subfamily) CFE88_RS08655 PF17871 AAA lid domain CFE88_RS08660 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CFE88_RS08665 PF02151 UvrB/uvrC motif CFE88_RS08670 PF17727 CtsR C-terminal dimerization domain CFE88_RS08670 PF05848 CtsR N-terminal HTH domain CFE88_RS08675 PF07662 Na+ dependent nucleoside transporter C-terminus CFE88_RS08675 PF01773 Na+ dependent nucleoside transporter N-terminus CFE88_RS08685 PF01174 SNO glutamine amidotransferase family CFE88_RS08690 PF01680 SOR/SNZ family CFE88_RS08695 PF00392 Bacterial regulatory proteins, gntR family CFE88_RS08695 PF00155 Aminotransferase class I and II CFE88_RS08780 PF00152 tRNA synthetases class II (D, K and N) CFE88_RS08780 PF01336 OB-fold nucleic acid binding domain CFE88_RS08785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CFE88_RS08790 PF02152 Dihydroneopterin aldolase CFE88_RS08795 PF00809 Pterin binding enzyme CFE88_RS08800 PF00291 Pyridoxal-phosphate dependent enzyme CFE88_RS08805 PF01430 Hsp33 protein CFE88_RS08810 PF17862 AAA+ lid domain CFE88_RS08810 PF06480 FtsH Extracellular CFE88_RS08810 PF01434 Peptidase family M41 CFE88_RS08810 PF00004 ATPase family associated with various cellular activities (AAA) CFE88_RS08815 PF00156 Phosphoribosyl transferase domain CFE88_RS08820 PF01171 PP-loop family CFE88_RS08820 PF11734 TilS substrate C-terminal domain CFE88_RS08825 PF00575 S1 RNA binding domain CFE88_RS08835 PF01479 S4 domain CFE88_RS08840 PF03819 MazG nucleotide pyrophosphohydrolase domain CFE88_RS08840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFE88_RS08845 PF14667 Polysaccharide biosynthesis C-terminal domain CFE88_RS08845 PF01943 Polysaccharide biosynthesis protein CFE88_RS08850 PF02559 CarD-like/TRCF domain CFE88_RS08850 PF00270 DEAD/DEAH box helicase CFE88_RS08850 PF03461 TRCF domain CFE88_RS08850 PF17757 UvrB interaction domain CFE88_RS08850 PF00271 Helicase conserved C-terminal domain CFE88_RS08855 PF01195 Peptidyl-tRNA hydrolase CFE88_RS08860 PF14693 Ribosomal protein TL5, C-terminal domain CFE88_RS08860 PF01386 Ribosomal L25p family CFE88_RS08865 PF14572 Phosphoribosyl synthetase-associated domain CFE88_RS08865 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CFE88_RS08870 PF00483 Nucleotidyl transferase CFE88_RS08870 PF00132 Bacterial transferase hexapeptide (six repeats) CFE88_RS08875 PF04026 SpoVG CFE88_RS08880 PF01042 Endoribonuclease L-PSP CFE88_RS08885 PF00156 Phosphoribosyl transferase domain CFE88_RS08885 PF09182 Bacterial purine repressor, N-terminal CFE88_RS08890 PF00288 GHMP kinases N terminal domain CFE88_RS08890 PF08544 GHMP kinases C terminal CFE88_RS08895 PF06257 Biofilm formation stimulator VEG CFE88_RS08900 PF00398 Ribosomal RNA adenine dimethylase CFE88_RS08905 PF13331 Domain of unknown function (DUF4093) CFE88_RS08905 PF01751 Toprim domain CFE88_RS08910 PF01026 TatD related DNase CFE88_RS08915 PF08264 Anticodon-binding domain of tRNA CFE88_RS08915 PF09334 tRNA synthetases class I (M) CFE88_RS08915 PF01588 Putative tRNA binding domain CFE88_RS08920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFE88_RS08925 PF01541 GIY-YIG catalytic domain CFE88_RS08930 PF05175 Methyltransferase small domain CFE88_RS08935 PF06156 Initiation control protein YabA CFE88_RS08940 PF04468 PSP1 C-terminal conserved region CFE88_RS08945 PF09115 DNA polymerase III, delta subunit, C terminal CFE88_RS08950 PF06153 Cyclic-di-AMP receptor CFE88_RS08955 PF02223 Thymidylate kinase CFE88_RS08960 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CFE88_RS08960 PF01276 Orn/Lys/Arg decarboxylase, major domain CFE88_RS08965 PF13302 Acetyltransferase (GNAT) domain CFE88_RS08985 PF02132 RecR protein CFE88_RS08985 PF13662 Toprim domain CFE88_RS08990 PF02575 YbaB/EbfC DNA-binding family CFE88_RS08995 PF12169 DNA polymerase III subunits gamma and tau domain III CFE88_RS09020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CFE88_RS09020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS09025 PF04898 Glutamate synthase central domain CFE88_RS09025 PF01493 GXGXG motif CFE88_RS09025 PF00310 Glutamine amidotransferases class-II CFE88_RS09025 PF01645 Conserved region in glutamate synthase CFE88_RS09030 PF03466 LysR substrate binding domain CFE88_RS09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFE88_RS09045 PF00293 NUDIX domain CFE88_RS09055 PF09318 Glycosyl transferase 1 domain A CFE88_RS09055 PF00534 Glycosyl transferases group 1 CFE88_RS09060 PF01476 LysM domain CFE88_RS09060 PF05257 CHAP domain CFE88_RS09065 PF03180 NLPA lipoprotein CFE88_RS09070 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS09075 PF09383 NIL domain CFE88_RS09075 PF00005 ABC transporter CFE88_RS09080 PF01053 Cys/Met metabolism PLP-dependent enzyme CFE88_RS09085 PF00291 Pyridoxal-phosphate dependent enzyme CFE88_RS09095 PF00209 Sodium:neurotransmitter symporter family CFE88_RS09105 PF12146 Serine aminopeptidase, S33 CFE88_RS09120 PF10057 Uncharacterized conserved protein (DUF2294) CFE88_RS09125 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CFE88_RS09130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CFE88_RS09130 PF00361 Proton-conducting membrane transporter CFE88_RS09140 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFE88_RS09140 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS09165 PF01022 Bacterial regulatory protein, arsR family CFE88_RS09195 PF03592 Terminase small subunit CFE88_RS09195 PF10668 Phage terminase small subunit CFE88_RS09295 PF00958 GMP synthase C terminal domain CFE88_RS09295 PF00117 Glutamine amidotransferase class-I CFE88_RS09300 PF00571 CBS domain CFE88_RS09300 PF00478 IMP dehydrogenase / GMP reductase domain CFE88_RS09305 PF00860 Permease family CFE88_RS09315 PF11181 Heat induced stress protein YflT CFE88_RS09335 PF00375 Sodium:dicarboxylate symporter family CFE88_RS09340 PF00881 Nitroreductase family CFE88_RS09350 PF00578 AhpC/TSA family CFE88_RS09355 PF13192 Thioredoxin domain CFE88_RS09355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS09385 PF00300 Histidine phosphatase superfamily (branch 1) CFE88_RS09390 PF01810 LysE type translocator CFE88_RS09430 PF01047 MarR family CFE88_RS09440 PF01965 DJ-1/PfpI family CFE88_RS09460 PF01084 Ribosomal protein S18 CFE88_RS09465 PF00436 Single-strand binding protein family CFE88_RS09470 PF01250 Ribosomal protein S6 CFE88_RS09485 PF01926 50S ribosome-binding GTPase CFE88_RS09485 PF06071 Protein of unknown function (DUF933) CFE88_RS09490 PF06107 Bacterial protein of unknown function (DUF951) CFE88_RS09495 PF00924 Mechanosensitive ion channel CFE88_RS09500 PF17762 HTH domain found in ParB protein CFE88_RS09500 PF02195 ParB-like nuclease domain CFE88_RS09510 PF01053 Cys/Met metabolism PLP-dependent enzyme CFE88_RS09515 PF01053 Cys/Met metabolism PLP-dependent enzyme CFE88_RS09520 PF02219 Methylenetetrahydrofolate reductase CFE88_RS09520 PF02574 Homocysteine S-methyltransferase CFE88_RS09525 PF08267 Cobalamin-independent synthase, N-terminal domain CFE88_RS09525 PF01717 Cobalamin-independent synthase, Catalytic domain CFE88_RS09535 PF02803 Thiolase, C-terminal domain CFE88_RS09535 PF00108 Thiolase, N-terminal domain CFE88_RS09550 PF01381 Helix-turn-helix CFE88_RS09560 PF00005 ABC transporter CFE88_RS09580 PF13302 Acetyltransferase (GNAT) domain CFE88_RS09590 PF10502 Signal peptidase, peptidase S26 CFE88_RS09605 PF00005 ABC transporter CFE88_RS09610 PF02687 FtsX-like permease family CFE88_RS09620 PF04650 YSIRK type signal peptide CFE88_RS09625 PF02687 FtsX-like permease family CFE88_RS09625 PF12704 MacB-like periplasmic core domain CFE88_RS09630 PF00005 ABC transporter CFE88_RS09670 PF17762 HTH domain found in ParB protein CFE88_RS09670 PF02195 ParB-like nuclease domain CFE88_RS09675 PF02527 rRNA small subunit methyltransferase G CFE88_RS09680 PF13932 GidA associated domain CFE88_RS09680 PF01134 Glucose inhibited division protein A CFE88_RS09685 PF01926 50S ribosome-binding GTPase CFE88_RS09685 PF12631 MnmE helical domain CFE88_RS09685 PF10396 GTP-binding protein TrmE N-terminus CFE88_RS09690 PF00825 Ribonuclease P CFE88_RS09695 PF00468 Ribosomal protein L34 CFE88_RS09700 PF11638 DnaA N-terminal domain CFE88_RS09700 PF08299 Bacterial dnaA protein helix-turn-helix CFE88_RS09700 PF00308 Bacterial dnaA protein CFE88_RS09705 PF00712 DNA polymerase III beta subunit, N-terminal domain CFE88_RS09705 PF02768 DNA polymerase III beta subunit, C-terminal domain CFE88_RS09705 PF02767 DNA polymerase III beta subunit, central domain CFE88_RS09715 PF02463 RecF/RecN/SMC N terminal domain CFE88_RS09720 PF00986 DNA gyrase B subunit, carboxyl terminus CFE88_RS09720 PF01751 Toprim domain CFE88_RS09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS09720 PF00204 DNA gyrase B CFE88_RS09725 PF00521 DNA gyrase/topoisomerase IV, subunit A CFE88_RS09725 PF03989 DNA gyrase C-terminal domain, beta-propeller CFE88_RS09730 PF01256 Carbohydrate kinase CFE88_RS09735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CFE88_RS09735 PF02403 Seryl-tRNA synthetase N-terminal domain CFE88_RS09740 PF03372 Endonuclease/Exonuclease/phosphatase family CFE88_RS09755 PF00561 alpha/beta hydrolase fold CFE88_RS09765 PF02272 DHHA1 domain CFE88_RS09765 PF01368 DHH family CFE88_RS09770 PF01281 Ribosomal protein L9, N-terminal domain CFE88_RS09770 PF03948 Ribosomal protein L9, C-terminal domain CFE88_RS09775 PF03796 DnaB-like helicase C terminal domain CFE88_RS09775 PF00772 DnaB-like helicase N terminal domain CFE88_RS09780 PF00709 Adenylosuccinate synthetase CFE88_RS09800 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS09800 PF00072 Response regulator receiver domain CFE88_RS09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS09805 PF00989 PAS fold CFE88_RS09805 PF00672 HAMP domain CFE88_RS09805 PF00512 His Kinase A (phospho-acceptor) domain CFE88_RS09810 PF07435 YycH protein CFE88_RS09820 PF00753 Metallo-beta-lactamase superfamily CFE88_RS09825 PF02590 Predicted SPOUT methyltransferase CFE88_RS09830 PF13395 HNH endonuclease CFE88_RS09830 PF18061 CRISPR-Cas9 WED domain CFE88_RS09830 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 CFE88_RS09830 PF18070 CRISPR-Cas9 PI domain CFE88_RS09830 PF18541 RuvC endonuclease subdomain 3 CFE88_RS09835 PF01867 CRISPR associated protein Cas1 CFE88_RS09840 PF09827 CRISPR associated protein Cas2 CFE88_RS09865 PF04507 Csa1 family CFE88_RS09895 PF04507 Csa1 family CFE88_RS09930 PF04507 Csa1 family CFE88_RS09935 PF01420 Type I restriction modification DNA specificity domain CFE88_RS09945 PF04507 Csa1 family CFE88_RS09960 PF07563 Protein of unknown function (DUF1541) CFE88_RS09965 PF16123 Hydroxyacylglutathione hydrolase C-terminus CFE88_RS09965 PF00753 Metallo-beta-lactamase superfamily CFE88_RS09970 PF13686 DsrE/DsrF/DrsH-like family CFE88_RS09975 PF02583 Metal-sensitive transcriptional repressor CFE88_RS09980 PF01925 Sulfite exporter TauE/SafE CFE88_RS09985 PF01451 Low molecular weight phosphotyrosine protein phosphatase CFE88_RS09990 PF02040 Arsenical pump membrane protein CFE88_RS09995 PF01022 Bacterial regulatory protein, arsR family CFE88_RS10000 PF02374 Anion-transporting ATPase CFE88_RS10005 PF06953 Arsenical resistance operon trans-acting repressor ArsD CFE88_RS10010 PF01022 Bacterial regulatory protein, arsR family CFE88_RS10025 PF04507 Csa1 family CFE88_RS10035 PF04507 Csa1 family CFE88_RS10040 PF00924 Mechanosensitive ion channel CFE88_RS10085 PF01207 Dihydrouridine synthase (Dus) CFE88_RS10090 PF06039 Malate:quinone oxidoreductase (Mqo) CFE88_RS10095 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CFE88_RS10100 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS10140 PF00746 LPXTG cell wall anchor motif CFE88_RS10145 PF00344 SecY translocase CFE88_RS10150 PF16993 Accessory Sec system protein Asp1 CFE88_RS10155 PF16929 Accessory Sec system GspB-transporter CFE88_RS10160 PF15432 Accessory Sec secretory system ASP3 CFE88_RS10165 PF01043 SecA preprotein cross-linking domain CFE88_RS10165 PF07517 SecA DEAD-like domain CFE88_RS10165 PF07516 SecA Wing and Scaffold domain CFE88_RS10170 PF00534 Glycosyl transferases group 1 CFE88_RS10185 PF00005 ABC transporter CFE88_RS10200 PF00202 Aminotransferase class-III CFE88_RS10205 PF00155 Aminotransferase class I and II CFE88_RS10210 PF03744 6-carboxyhexanoate--CoA ligase CFE88_RS10220 PF14731 Staphopain proregion CFE88_RS10220 PF05543 Staphopain peptidase C47 CFE88_RS10225 PF04650 YSIRK type signal peptide CFE88_RS10230 PF04507 Csa1 family CFE88_RS10235 PF07683 Cobalamin synthesis protein cobW C-terminal domain CFE88_RS10235 PF02492 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS10250 PF01297 Zinc-uptake complex component A periplasmic CFE88_RS10255 PF02424 ApbE family CFE88_RS10260 PF03358 NADPH-dependent FMN reductase CFE88_RS10260 PF04205 FMN-binding domain CFE88_RS10260 PF00890 FAD binding domain CFE88_RS10265 PF07690 Major Facilitator Superfamily CFE88_RS10270 PF00106 short chain dehydrogenase CFE88_RS10275 PF12857 TOBE-like domain CFE88_RS10275 PF00005 ABC transporter CFE88_RS10315 PF10100 Staphylopine dehydrogenase CFE88_RS10320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFE88_RS10325 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10330 PF12911 N-terminal TM domain of oligopeptide transport permease C CFE88_RS10330 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10335 PF00005 ABC transporter CFE88_RS10340 PF00005 ABC transporter CFE88_RS10345 PF07690 Major Facilitator Superfamily CFE88_RS10350 PF01228 Glycine radical CFE88_RS10350 PF02901 Pyruvate formate lyase-like CFE88_RS10355 PF04055 Radical SAM superfamily CFE88_RS10360 PF01546 Peptidase family M20/M25/M40 CFE88_RS10360 PF07687 Peptidase dimerisation domain CFE88_RS10365 PF05525 Branched-chain amino acid transport protein CFE88_RS10370 PF00440 Bacterial regulatory proteins, tetR family CFE88_RS10370 PF17932 Tetracyclin repressor-like, C-terminal domain CFE88_RS10375 PF05853 beta-keto acid cleavage enzyme CFE88_RS10380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CFE88_RS10380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CFE88_RS10390 PF00005 ABC transporter CFE88_RS10390 PF00571 CBS domain CFE88_RS10395 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CFE88_RS10405 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10410 PF01476 LysM domain CFE88_RS10410 PF00756 Putative esterase CFE88_RS10415 PF03606 C4-dicarboxylate anaerobic carrier CFE88_RS10420 PF00696 Amino acid kinase family CFE88_RS10425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFE88_RS10425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFE88_RS10435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFE88_RS10440 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CFE88_RS10445 PF04055 Radical SAM superfamily CFE88_RS10445 PF06968 Biotin and Thiamin Synthesis associated domain CFE88_RS10450 PF00465 Iron-containing alcohol dehydrogenase CFE88_RS10455 PF02733 Dak1 domain CFE88_RS10460 PF02734 DAK2 domain CFE88_RS10465 PF03610 PTS system fructose IIA component CFE88_RS10480 PF07690 Major Facilitator Superfamily CFE88_RS10495 PF13193 AMP-binding enzyme C-terminal domain CFE88_RS10495 PF00668 Condensation domain CFE88_RS10495 PF00501 AMP-binding enzyme CFE88_RS10495 PF00550 Phosphopantetheine attachment site CFE88_RS10495 PF00975 Thioesterase domain CFE88_RS10505 PF04650 YSIRK type signal peptide CFE88_RS10515 PF00083 Sugar (and other) transporter CFE88_RS10530 PF00892 EamA-like transporter family CFE88_RS10535 PF09084 NMT1/THI5 like CFE88_RS10540 PF00939 Sodium:sulfate symporter transmembrane region CFE88_RS10545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS10545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS10550 PF00676 Dehydrogenase E1 component CFE88_RS10555 PF02779 Transketolase, pyrimidine binding domain CFE88_RS10555 PF02780 Transketolase, C-terminal domain CFE88_RS10560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CFE88_RS10560 PF00364 Biotin-requiring enzyme CFE88_RS10560 PF02817 e3 binding domain CFE88_RS10570 PF02028 BCCT, betaine/carnitine/choline family transporter CFE88_RS10580 PF01470 Pyroglutamyl peptidase CFE88_RS10585 PF12368 Rhodanase C-terminal CFE88_RS10585 PF17773 UPF0176 acylphosphatase like domain CFE88_RS10585 PF00581 Rhodanese-like domain CFE88_RS10590 PF08450 SMP-30/Gluconolactonase/LRE-like region CFE88_RS10595 PF04264 YceI-like domain CFE88_RS10605 PF06039 Malate:quinone oxidoreductase (Mqo) CFE88_RS10615 PF11208 Protein of unknown function (DUF2992) CFE88_RS10630 PF13393 Histidyl-tRNA synthetase CFE88_RS10635 PF01634 ATP phosphoribosyltransferase CFE88_RS10640 PF00815 Histidinol dehydrogenase CFE88_RS10645 PF00475 Imidazoleglycerol-phosphate dehydratase CFE88_RS10650 PF00117 Glutamine amidotransferase class-I CFE88_RS10655 PF00977 Histidine biosynthesis protein CFE88_RS10660 PF00977 Histidine biosynthesis protein CFE88_RS10665 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CFE88_RS10665 PF01502 Phosphoribosyl-AMP cyclohydrolase CFE88_RS10670 PF00797 N-acetyltransferase CFE88_RS10680 PF04650 YSIRK type signal peptide CFE88_RS10695 PF07690 Major Facilitator Superfamily CFE88_RS10700 PF02872 5'-nucleotidase, C-terminal domain CFE88_RS10700 PF00149 Calcineurin-like phosphoesterase CFE88_RS10715 PF00005 ABC transporter CFE88_RS10720 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10725 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS10745 PF07516 SecA Wing and Scaffold domain CFE88_RS10745 PF01043 SecA preprotein cross-linking domain CFE88_RS10745 PF07517 SecA DEAD-like domain CFE88_RS10750 PF00534 Glycosyl transferases group 1 CFE88_RS10765 PF01641 SelR domain CFE88_RS10765 PF01625 Peptide methionine sulfoxide reductase CFE88_RS10775 PF07690 Major Facilitator Superfamily CFE88_RS10780 PF01613 Flavin reductase like domain CFE88_RS10795 PF02566 OsmC-like protein CFE88_RS10800 PF01468 GA module CFE88_RS10805 PF05257 CHAP domain CFE88_RS10805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CFE88_RS10810 PF01061 ABC-2 type transporter CFE88_RS10820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CFE88_RS10820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CFE88_RS10820 PF02378 Phosphotransferase system, EIIC CFE88_RS10855 PF07687 Peptidase dimerisation domain CFE88_RS10855 PF01546 Peptidase family M20/M25/M40 CFE88_RS10860 PF07504 Fungalysin/Thermolysin Propeptide Motif CFE88_RS10860 PF03413 Peptidase propeptide and YPEB domain CFE88_RS10860 PF02868 Thermolysin metallopeptidase, alpha-helical domain CFE88_RS10860 PF01447 Thermolysin metallopeptidase, catalytic domain CFE88_RS10865 PF02863 Arginine repressor, C-terminal domain CFE88_RS10865 PF01316 Arginine repressor, DNA binding domain CFE88_RS10875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CFE88_RS10875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CFE88_RS10880 PF13520 Amino acid permease CFE88_RS10885 PF13545 Crp-like helix-turn-helix domain CFE88_RS10885 PF00027 Cyclic nucleotide-binding domain CFE88_RS10895 PF09587 Bacterial capsule synthesis protein PGA_cap CFE88_RS10905 PF00205 Thiamine pyrophosphate enzyme, central domain CFE88_RS10905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS10905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFE88_RS10915 PF01476 LysM domain CFE88_RS10915 PF05257 CHAP domain CFE88_RS10920 PF06013 Proteins of 100 residues with WXG CFE88_RS10930 PF10661 WXG100 protein secretion system (Wss), protein EssA CFE88_RS10935 PF08817 WXG100 protein secretion system (Wss), protein YukD CFE88_RS10940 PF10140 WXG100 protein secretion system (Wss), protein YukC CFE88_RS10945 PF01580 FtsK/SpoIIIE family CFE88_RS10945 PF12538 DNA transporter CFE88_RS10955 PF06013 Proteins of 100 residues with WXG CFE88_RS10960 PF16887 Domain of unknown function (DUF5081) CFE88_RS10975 PF04634 Protein of unknown function, DUF600 CFE88_RS10980 PF14449 Pre-toxin TG CFE88_RS10985 PF04634 Protein of unknown function, DUF600 CFE88_RS10990 PF14449 Pre-toxin TG CFE88_RS11065 PF04634 Protein of unknown function, DUF600 CFE88_RS11070 PF04634 Protein of unknown function, DUF600 CFE88_RS11075 PF04634 Protein of unknown function, DUF600 CFE88_RS11080 PF02796 Helix-turn-helix domain of resolvase CFE88_RS11080 PF00239 Resolvase, N terminal domain CFE88_RS11100 PF05908 Poly-gamma-glutamate hydrolase CFE88_RS11110 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CFE88_RS11115 PF13460 NAD(P)H-binding CFE88_RS11115 PF11066 Protein of unknown function (DUF2867) CFE88_RS11120 PF00245 Alkaline phosphatase CFE88_RS11130 PF00486 Transcriptional regulatory protein, C terminal CFE88_RS11130 PF00072 Response regulator receiver domain CFE88_RS11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS11140 PF00005 ABC transporter CFE88_RS11190 PF01047 MarR family CFE88_RS11200 PF00255 Glutathione peroxidase CFE88_RS11210 PF01507 Phosphoadenosine phosphosulfate reductase family CFE88_RS11215 PF00667 FAD binding domain CFE88_RS11215 PF00175 Oxidoreductase NAD-binding domain CFE88_RS11215 PF00258 Flavodoxin CFE88_RS11220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFE88_RS11220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFE88_RS11225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFE88_RS11230 PF14824 Sirohaem biosynthesis protein central CFE88_RS11235 PF01925 Sulfite exporter TauE/SafE CFE88_RS11240 PF14306 PUA-like domain CFE88_RS11240 PF01747 ATP-sulfurylase CFE88_RS11255 PF13597 Anaerobic ribonucleoside-triphosphate reductase CFE88_RS11255 PF03477 ATP cone domain CFE88_RS11265 PF03605 Anaerobic c4-dicarboxylate membrane transporter CFE88_RS11270 PF02028 BCCT, betaine/carnitine/choline family transporter CFE88_RS11280 PF00171 Aldehyde dehydrogenase family CFE88_RS11285 PF05199 GMC oxidoreductase CFE88_RS11285 PF00732 GMC oxidoreductase CFE88_RS11300 PF13193 AMP-binding enzyme C-terminal domain CFE88_RS11300 PF00501 AMP-binding enzyme CFE88_RS11305 PF00391 PEP-utilising enzyme, mobile domain CFE88_RS11305 PF02896 PEP-utilising enzyme, TIM barrel domain CFE88_RS11305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CFE88_RS11310 PF03618 Kinase/pyrophosphorylase CFE88_RS11315 PF06039 Malate:quinone oxidoreductase (Mqo) CFE88_RS11325 PF00274 Fructose-bisphosphate aldolase class-I CFE88_RS11330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS11330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS11355 PF00202 Aminotransferase class-III CFE88_RS11360 PF13520 Amino acid permease CFE88_RS11365 PF03466 LysR substrate binding domain CFE88_RS11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFE88_RS11370 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CFE88_RS11370 PF00056 lactate/malate dehydrogenase, NAD binding domain CFE88_RS11375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFE88_RS11375 PF00205 Thiamine pyrophosphate enzyme, central domain CFE88_RS11375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS11380 PF03306 Alpha-acetolactate decarboxylase CFE88_RS11390 PF02548 Ketopantoate hydroxymethyltransferase CFE88_RS11395 PF02569 Pantoate-beta-alanine ligase CFE88_RS11400 PF02261 Aspartate decarboxylase CFE88_RS11415 PF02677 Epoxyqueuosine reductase QueH CFE88_RS11425 PF01180 Dihydroorotate dehydrogenase CFE88_RS11430 PF03881 Fructosamine kinase CFE88_RS11435 PF00324 Amino acid permease CFE88_RS11445 PF03976 Polyphosphate kinase 2 (PPK2) CFE88_RS11455 PF06737 Transglycosylase-like domain CFE88_RS11460 PF01757 Acyltransferase family CFE88_RS11465 PF05257 CHAP domain CFE88_RS11475 PF00155 Aminotransferase class I and II CFE88_RS11480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS11485 PF00403 Heavy-metal-associated domain CFE88_RS11490 PF00403 Heavy-metal-associated domain CFE88_RS11505 PF00171 Aldehyde dehydrogenase family CFE88_RS11515 PF07670 Nucleoside recognition CFE88_RS11515 PF07664 Ferrous iron transport protein B C terminus CFE88_RS11515 PF17910 FeoB cytosolic helical domain CFE88_RS11515 PF02421 Ferrous iron transport protein B CFE88_RS11530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CFE88_RS11530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CFE88_RS11535 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CFE88_RS11535 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CFE88_RS11540 PF00368 Hydroxymethylglutaryl-coenzyme A reductase CFE88_RS11555 PF03466 LysR substrate binding domain CFE88_RS11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CFE88_RS11560 PF03788 LrgA family CFE88_RS11565 PF04172 LrgB-like family CFE88_RS11570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CFE88_RS11570 PF00205 Thiamine pyrophosphate enzyme, central domain CFE88_RS11570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CFE88_RS11575 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CFE88_RS11575 PF00367 phosphotransferase system, EIIB CFE88_RS11575 PF02378 Phosphotransferase system, EIIC CFE88_RS11585 PF02517 CPBP intramembrane metalloprotease CFE88_RS11590 PF00107 Zinc-binding dehydrogenase CFE88_RS11590 PF13823 Alcohol dehydrogenase GroES-associated CFE88_RS11590 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS11595 PF00085 Thioredoxin CFE88_RS11600 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CFE88_RS11600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CFE88_RS11605 PF07859 alpha/beta hydrolase fold CFE88_RS11615 PF08245 Mur ligase middle domain CFE88_RS11620 PF14102 Capsule biosynthesis CapC CFE88_RS11625 PF09587 Bacterial capsule synthesis protein PGA_cap CFE88_RS11640 PF06800 Sugar transport protein CFE88_RS11645 PF05025 RbsD / FucU transport protein family CFE88_RS11650 PF00294 pfkB family carbohydrate kinase CFE88_RS11655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFE88_RS11655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFE88_RS11670 PF01842 ACT domain CFE88_RS11670 PF03315 Serine dehydratase beta chain CFE88_RS11675 PF03313 Serine dehydratase alpha chain CFE88_RS11690 PF04203 Sortase domain CFE88_RS11700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CFE88_RS11700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11705 PF00881 Nitroreductase family CFE88_RS11715 PF00171 Aldehyde dehydrogenase family CFE88_RS11720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CFE88_RS11735 PF00171 Aldehyde dehydrogenase family CFE88_RS11755 PF06874 Firmicute fructose-1,6-bisphosphatase CFE88_RS11760 PF09335 SNARE associated Golgi protein CFE88_RS11765 PF00899 ThiF family CFE88_RS11770 PF05690 Thiazole biosynthesis protein ThiG CFE88_RS11780 PF01266 FAD dependent oxidoreductase CFE88_RS11790 PF07690 Major Facilitator Superfamily CFE88_RS11805 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CFE88_RS11810 PF04607 Region found in RelA / SpoT proteins CFE88_RS11825 PF00561 alpha/beta hydrolase fold CFE88_RS11835 PF13411 MerR HTH family regulatory protein CFE88_RS11835 PF07739 TipAS antibiotic-recognition domain CFE88_RS11840 PF07690 Major Facilitator Superfamily CFE88_RS11845 PF07729 FCD domain CFE88_RS11845 PF00392 Bacterial regulatory proteins, gntR family CFE88_RS11850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CFE88_RS11850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CFE88_RS11855 PF02447 GntP family permease CFE88_RS11860 PF00483 Nucleotidyl transferase CFE88_RS11865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CFE88_RS11865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CFE88_RS11865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CFE88_RS11865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CFE88_RS11870 PF00535 Glycosyl transferase family 2 CFE88_RS11875 PF09318 Glycosyl transferase 1 domain A CFE88_RS11875 PF00534 Glycosyl transferases group 1 CFE88_RS11880 PF00293 NUDIX domain CFE88_RS11885 PF17757 UvrB interaction domain CFE88_RS11885 PF02151 UvrB/uvrC motif CFE88_RS11885 PF12344 Ultra-violet resistance protein B CFE88_RS11885 PF04851 Type III restriction enzyme, res subunit CFE88_RS11885 PF00271 Helicase conserved C-terminal domain CFE88_RS11900 PF00106 short chain dehydrogenase CFE88_RS11905 PF01546 Peptidase family M20/M25/M40 CFE88_RS11905 PF07687 Peptidase dimerisation domain CFE88_RS11910 PF17941 Polyphosphate kinase C-terminal domain 1 CFE88_RS11910 PF13090 Polyphosphate kinase C-terminal domain 2 CFE88_RS11910 PF02503 Polyphosphate kinase middle domain CFE88_RS11910 PF13089 Polyphosphate kinase N-terminal domain CFE88_RS11915 PF02541 Ppx/GppA phosphatase family CFE88_RS11930 PF05343 M42 glutamyl aminopeptidase CFE88_RS11940 PF01645 Conserved region in glutamate synthase CFE88_RS11955 PF00005 ABC transporter CFE88_RS11960 PF03649 Uncharacterised protein family (UPF0014) CFE88_RS11965 PF07690 Major Facilitator Superfamily CFE88_RS11970 PF00135 Carboxylesterase family CFE88_RS11975 PF13520 Amino acid permease CFE88_RS12000 PF00107 Zinc-binding dehydrogenase CFE88_RS12000 PF08240 Alcohol dehydrogenase GroES-like domain CFE88_RS12005 PF00005 ABC transporter CFE88_RS12005 PF00571 CBS domain CFE88_RS12010 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS12015 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CFE88_RS12020 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS12025 PF04172 LrgB-like family CFE88_RS12030 PF03788 LrgA family CFE88_RS12035 PF00072 Response regulator receiver domain CFE88_RS12035 PF04397 LytTr DNA-binding domain CFE88_RS12040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS12040 PF06580 Histidine kinase CFE88_RS12040 PF07694 5TMR of 5TMR-LYT CFE88_RS12040 PF13492 GAF domain CFE88_RS12045 PF07690 Major Facilitator Superfamily CFE88_RS12050 PF02558 Ketopantoate reductase PanE/ApbA CFE88_RS12050 PF08546 Ketopantoate reductase PanE/ApbA C terminal CFE88_RS12055 PF02096 60Kd inner membrane protein CFE88_RS12060 PF00144 Beta-lactamase CFE88_RS12065 PF13520 Amino acid permease CFE88_RS12070 PF00324 Amino acid permease CFE88_RS12085 PF07690 Major Facilitator Superfamily CFE88_RS12095 PF02595 Glycerate kinase family CFE88_RS12110 PF16916 Dimerisation domain of Zinc Transporter CFE88_RS12110 PF01545 Cation efflux family CFE88_RS12115 PF00300 Histidine phosphatase superfamily (branch 1) CFE88_RS12125 PF00497 Bacterial extracellular solute-binding proteins, family 3 CFE88_RS12130 PF00528 Binding-protein-dependent transport system inner membrane component CFE88_RS12135 PF00005 ABC transporter CFE88_RS12140 PF02388 FemAB family CFE88_RS12160 PF01226 Formate/nitrite transporter CFE88_RS12165 PF00583 Acetyltransferase (GNAT) family CFE88_RS12170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CFE88_RS12190 PF07992 Pyridine nucleotide-disulphide oxidoreductase CFE88_RS12190 PF04324 BFD-like [2Fe-2S] binding domain CFE88_RS12190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CFE88_RS12190 PF18267 Rubredoxin NAD+ reductase C-terminal domain CFE88_RS12190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CFE88_RS12195 PF00355 Rieske [2Fe-2S] domain CFE88_RS12200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CFE88_RS12205 PF01568 Molydopterin dinucleotide binding domain CFE88_RS12205 PF00384 Molybdopterin oxidoreductase CFE88_RS12205 PF14710 Respiratory nitrate reductase alpha N-terminal CFE88_RS12210 PF14711 Respiratory nitrate reductase beta C-terminal CFE88_RS12210 PF13247 4Fe-4S dicluster domain CFE88_RS12225 PF02665 Nitrate reductase gamma subunit CFE88_RS12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CFE88_RS12235 PF07730 Histidine kinase CFE88_RS12240 PF00196 Bacterial regulatory proteins, luxR family CFE88_RS12240 PF00072 Response regulator receiver domain CFE88_RS12245 PF07690 Major Facilitator Superfamily CFE88_RS12250 PF01047 MarR family CFE88_RS12265 PF00375 Sodium:dicarboxylate symporter family CFE88_RS12275 PF16242 Pyridoxamine 5'-phosphate oxidase like CFE88_RS12290 PF02378 Phosphotransferase system, EIIC CFE88_RS12290 PF00367 phosphotransferase system, EIIB CFE88_RS12350 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CFE88_RS12385 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CFE88_RS12575 PF07690 Major Facilitator Superfamily CFE88_RS12580 PF08360 QacR-like protein, C-terminal region CFE88_RS12580 PF00440 Bacterial regulatory proteins, tetR family CFE88_RS12585 PF00239 Resolvase, N terminal domain CFE88_RS12585 PF02796 Helix-turn-helix domain of resolvase CFE88_RS12590 PF02796 Helix-turn-helix domain of resolvase CFE88_RS12590 PF00239 Resolvase, N terminal domain CFE88_RS12595 PF03965 Penicillinase repressor CFE88_RS12600 PF00905 Penicillin binding protein transpeptidase domain CFE88_RS12600 PF05569 BlaR1 peptidase M56 CFE88_RS12605 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CFE88_RS12630 PF16916 Dimerisation domain of Zinc Transporter CFE88_RS12630 PF01545 Cation efflux family CFE88_RS12640 PF02583 Metal-sensitive transcriptional repressor CFE88_RS12645 PF00403 Heavy-metal-associated domain CFE88_RS12650 PF00403 Heavy-metal-associated domain CFE88_RS12685 PF12848 ABC transporter CFE88_RS12685 PF00005 ABC transporter CFE88_RS12695 PF03432 Relaxase/Mobilisation nuclease domain CFE88_RS12720 PF01446 Replication protein CFE88_RS12725 PF00893 Small Multidrug Resistance protein CFE88_RS12900 PF14449 Pre-toxin TG