locus-tag class description CFE88_RS00020 IPR014188 Acrylyl-CoA reductase AcuI CFE88_RS00020 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00020 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS00020 IPR011032 GroES-like superfamily CFE88_RS00020 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00020 IPR020843 Polyketide synthase, enoylreductase domain CFE88_RS00025 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00025 IPR000182 GNAT domain CFE88_RS00030 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS00030 IPR001173 Glycosyltransferase 2-like CFE88_RS00030 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00040 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS00040 IPR001173 Glycosyltransferase 2-like CFE88_RS00040 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00045 IPR003804 L-lactate permease CFE88_RS00050 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CFE88_RS00050 IPR001296 Glycosyl transferase, family 1 CFE88_RS00055 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS00055 IPR006231 Malate:quinone-oxidoreductase CFE88_RS00060 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS00060 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS00060 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS00060 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS00060 IPR003660 HAMP domain CFE88_RS00060 IPR005467 Histidine kinase domain CFE88_RS00065 IPR011006 CheY-like superfamily CFE88_RS00065 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS00065 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS00065 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS00065 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00070 IPR003838 ABC transporter permease protein domain CFE88_RS00075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00075 IPR003593 AAA+ ATPase domain CFE88_RS00075 IPR003439 ABC transporter-like CFE88_RS00085 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00085 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS00085 IPR000835 MarR-type HTH domain CFE88_RS00085 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00090 IPR023599 Membrane-associated protein TcaA CFE88_RS00090 IPR026870 Zinc-ribbon domain CFE88_RS00095 IPR004812 Drug resistance transporter Bcr/CmlA subfamily CFE88_RS00095 IPR020846 Major facilitator superfamily domain CFE88_RS00095 IPR036259 MFS transporter superfamily CFE88_RS00095 IPR004734 Multidrug resistance protein CFE88_RS00095 IPR011701 Major facilitator superfamily CFE88_RS00105 IPR011053 Single hybrid motif CFE88_RS00110 IPR036259 MFS transporter superfamily CFE88_RS00110 IPR020846 Major facilitator superfamily domain CFE88_RS00110 IPR011701 Major facilitator superfamily CFE88_RS00110 IPR004638 Drug resistance transporter EmrB-like CFE88_RS00125 IPR013094 Alpha/beta hydrolase fold-3 CFE88_RS00125 IPR000084 PE-PGRS family, N-terminal CFE88_RS00125 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00145 IPR013785 Aldolase-type TIM barrel CFE88_RS00145 IPR000262 FMN-dependent dehydrogenase CFE88_RS00145 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent CFE88_RS00150 IPR004445 Sodium/glutamate symport carrier protein GltS CFE88_RS00170 IPR036995 Methylpurine-DNA glycosylase superfamily CFE88_RS00170 IPR003180 Methylpurine-DNA glycosylase CFE88_RS00170 IPR011034 Formyl transferase-like, C-terminal domain superfamily CFE88_RS00180 IPR000577 Carbohydrate kinase, FGGY CFE88_RS00180 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS00180 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS00180 IPR005929 Ribulokinase CFE88_RS00185 IPR014718 Glycoside hydrolase-type carbohydrate-binding CFE88_RS00185 IPR011013 Galactose mutarotase-like domain superfamily CFE88_RS00185 IPR015443 Aldose 1-epimerase CFE88_RS00185 IPR013458 Aldose 1-epimerase, bacterial CFE88_RS00185 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase CFE88_RS00185 IPR018052 Aldose 1-epimerase, conserved site CFE88_RS00190 IPR005163 3-alpha domain CFE88_RS00190 IPR005302 Molybdenum cofactor sulfurase, C-terminal CFE88_RS00190 IPR011037 Pyruvate kinase-like, insert domain superfamily CFE88_RS00195 IPR037171 NagB/RpiA transferase-like CFE88_RS00195 IPR004788 Ribose 5-phosphate isomerase, type A CFE88_RS00195 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup CFE88_RS00205 IPR003675 CAAX prenyl protease 2 CFE88_RS00205 IPR036259 MFS transporter superfamily CFE88_RS00210 IPR005923 Formiminoglutamase CFE88_RS00210 IPR023696 Ureohydrolase domain superfamily CFE88_RS00210 IPR006035 Ureohydrolase CFE88_RS00215 IPR017439 Amidohydrolase CFE88_RS00215 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS00215 IPR011650 Peptidase M20, dimerisation domain CFE88_RS00215 IPR002933 Peptidase M20 CFE88_RS00220 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00220 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS00220 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00225 IPR002563 Flavin reductase like domain CFE88_RS00225 IPR012349 FMN-binding split barrel CFE88_RS00245 IPR035472 RpiR-like, SIS domain CFE88_RS00245 IPR001347 Sugar isomerase (SIS) CFE88_RS00245 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00245 IPR009057 Homeobox-like domain superfamily CFE88_RS00245 IPR000281 Helix-turn-helix protein RpiR CFE88_RS00250 IPR003352 Phosphotransferase system, EIIC CFE88_RS00250 IPR036878 Glucose permease domain IIB CFE88_RS00250 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS00250 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component CFE88_RS00250 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CFE88_RS00250 IPR013013 Phosphotransferase system, EIIC component, type 1 CFE88_RS00250 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS00260 IPR006439 HAD hydrolase, subfamily IA CFE88_RS00260 IPR041492 Haloacid dehalogenase-like hydrolase CFE88_RS00260 IPR036412 HAD-like superfamily CFE88_RS00260 IPR023214 HAD superfamily CFE88_RS00260 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CFE88_RS00280 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS00280 IPR004840 Amino acid permease, conserved site CFE88_RS00290 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS00290 IPR013013 Phosphotransferase system, EIIC component, type 1 CFE88_RS00290 IPR003352 Phosphotransferase system, EIIC CFE88_RS00290 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS00290 IPR036878 Glucose permease domain IIB CFE88_RS00295 IPR001347 Sugar isomerase (SIS) CFE88_RS00295 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ CFE88_RS00295 IPR005486 Glucokinase regulatory protein, conserved site CFE88_RS00295 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein CFE88_RS00310 IPR003675 CAAX prenyl protease 2 CFE88_RS00320 IPR033942 Inositol monophosphatase CFE88_RS00320 IPR020583 Inositol monophosphatase, metal-binding site CFE88_RS00320 IPR000760 Inositol monophosphatase-like CFE88_RS00320 IPR020550 Inositol monophosphatase, conserved site CFE88_RS00320 IPR022337 Inositol monophosphatase, SuhB CFE88_RS00325 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU CFE88_RS00325 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS00330 IPR006657 Molybdopterin dinucleotide-binding domain CFE88_RS00330 IPR006656 Molybdopterin oxidoreductase CFE88_RS00330 IPR006478 Formate dehydrogenase, alpha subunit CFE88_RS00330 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CFE88_RS00330 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CFE88_RS00330 IPR041924 Formate dehydrogenase H, N-terminal CFE88_RS00330 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CFE88_RS00330 IPR009010 Aspartate decarboxylase-like domain superfamily CFE88_RS00330 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CFE88_RS00330 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS00330 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CFE88_RS00330 IPR036010 2Fe-2S ferredoxin-like superfamily CFE88_RS00330 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS00345 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS00345 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CFE88_RS00345 IPR038200 GW domain superfamily CFE88_RS00345 IPR025987 GW domain CFE88_RS00345 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS00350 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS00350 IPR002938 FAD-binding domain CFE88_RS00355 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS00355 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS00355 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS00355 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00360 IPR000390 Small multidrug resistance protein family CFE88_RS00365 IPR000390 Small multidrug resistance protein family CFE88_RS00370 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS00370 IPR007921 CHAP domain CFE88_RS00380 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS00380 IPR003421 Opine dehydrogenase CFE88_RS00380 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00380 IPR013332 Ketopantoate reductase, N-terminal domain CFE88_RS00380 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CFE88_RS00385 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CFE88_RS00385 IPR004770 Na+/H+ antiporter NhaC CFE88_RS00390 IPR007921 CHAP domain CFE88_RS00390 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS00400 IPR000835 MarR-type HTH domain CFE88_RS00400 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00400 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS00400 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00410 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS00410 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00410 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00415 IPR002669 Urease accessory protein UreD CFE88_RS00420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00420 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS00420 IPR004400 Urease accessory protein UreG CFE88_RS00425 IPR002639 Urease accessory protein UreF CFE88_RS00425 IPR038277 UreF domain superfamily CFE88_RS00430 IPR036118 UreE urease accessory, N-terminal domain superfamily CFE88_RS00430 IPR036675 UreE, C-terminal domain superfamily CFE88_RS00430 IPR004029 UreE urease accessory, N-terminal CFE88_RS00430 IPR012406 Urease accessory protein UreE CFE88_RS00430 IPR007864 Urease accessory protein UreE, C-terminal domain CFE88_RS00435 IPR032466 Metal-dependent hydrolase CFE88_RS00435 IPR029754 Urease nickel binding site CFE88_RS00435 IPR017951 Urease alpha subunit, C-terminal CFE88_RS00435 IPR005848 Urease, alpha subunit CFE88_RS00435 IPR017950 Urease active site CFE88_RS00435 IPR011612 Urease alpha-subunit, N-terminal domain CFE88_RS00435 IPR011059 Metal-dependent hydrolase, composite domain superfamily CFE88_RS00435 IPR006680 Amidohydrolase-related CFE88_RS00440 IPR036461 Urease, beta subunit superfamily CFE88_RS00440 IPR002019 Urease, beta subunit CFE88_RS00445 IPR036463 Urease, gamma subunit superfamily CFE88_RS00445 IPR002026 Urease, gamma/gamma-beta subunit CFE88_RS00445 IPR012010 Urease, gamma subunit CFE88_RS00455 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CFE88_RS00455 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CFE88_RS00455 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CFE88_RS00455 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CFE88_RS00455 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain CFE88_RS00455 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CFE88_RS00460 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site CFE88_RS00460 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS00460 IPR036452 Ribonucleoside hydrolase-like CFE88_RS00460 IPR023186 Inosine/uridine-preferring nucleoside hydrolase CFE88_RS00460 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA CFE88_RS00465 IPR003784 BioY protein CFE88_RS00475 IPR016193 Cytidine deaminase-like CFE88_RS00475 IPR003786 Sulfur carrier protein FdhD CFE88_RS00480 IPR041879 YvgL-like, substrate binding domain CFE88_RS00480 IPR005950 Molybdate ABC transporter, substrate-binding protein CFE88_RS00485 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS00485 IPR035906 MetI-like superfamily CFE88_RS00485 IPR011867 Molybdate ABC transporter, permease protein CFE88_RS00490 IPR011868 Molybdate ABC transporter, ATP-binding protein CFE88_RS00490 IPR015852 ABC transporter, molybdenum import, ModC CFE88_RS00490 IPR003593 AAA+ ATPase domain CFE88_RS00490 IPR003439 ABC transporter-like CFE88_RS00490 IPR005116 Transport-associated OB, type 1 CFE88_RS00490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00490 IPR008995 Molybdate/tungstate binding, C-terminal CFE88_RS00490 IPR004606 Molybdenum-pterin binding CFE88_RS00490 IPR017871 ABC transporter, conserved site CFE88_RS00495 IPR000594 THIF-type NAD/FAD binding fold CFE88_RS00495 IPR035985 Ubiquitin-activating enzyme CFE88_RS00500 IPR036425 MoaB/Mog-like domain superfamily CFE88_RS00500 IPR001453 MoaB/Mog domain CFE88_RS00500 IPR008284 Molybdenum cofactor biosynthesis, conserved site CFE88_RS00500 IPR012245 Molybdenum cofactor biosynthesis protein MoaB CFE88_RS00505 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain CFE88_RS00505 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily CFE88_RS00505 IPR023045 Molybdenum cofactor biosynthesis C CFE88_RS00510 IPR036688 MoeA, C-terminal, domain IV superfamily CFE88_RS00510 IPR036425 MoaB/Mog-like domain superfamily CFE88_RS00510 IPR036135 MoeA, N-terminal and linker domain superfamily CFE88_RS00510 IPR001453 MoaB/Mog domain CFE88_RS00510 IPR005110 MoeA, N-terminal and linker domain CFE88_RS00510 IPR005111 MoeA, C-terminal, domain IV CFE88_RS00510 IPR038987 Molybdopterin biosynthesis protein MoeA-like CFE88_RS00520 IPR003448 Molybdopterin biosynthesis MoaE CFE88_RS00520 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily CFE88_RS00525 IPR012675 Beta-grasp domain superfamily CFE88_RS00525 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CFE88_RS00525 IPR003749 Sulfur carrier ThiS/MoaD-like CFE88_RS00530 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00530 IPR013482 Molybdenum cofactor guanylyltransferase CFE88_RS00530 IPR025877 MobA-like NTP transferase CFE88_RS00535 IPR013785 Aldolase-type TIM barrel CFE88_RS00535 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CFE88_RS00535 IPR007197 Radical SAM CFE88_RS00535 IPR010505 Molybdenum cofactor synthesis C-terminal CFE88_RS00535 IPR006638 Elp3/MiaB/NifB CFE88_RS00535 IPR013483 Molybdenum cofactor biosynthesis protein A CFE88_RS00540 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00540 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00540 IPR000835 MarR-type HTH domain CFE88_RS00540 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS00545 IPR011701 Major facilitator superfamily CFE88_RS00545 IPR036259 MFS transporter superfamily CFE88_RS00545 IPR005828 Major facilitator, sugar transporter-like CFE88_RS00545 IPR020846 Major facilitator superfamily domain CFE88_RS00545 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CFE88_RS00550 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS00550 IPR000835 MarR-type HTH domain CFE88_RS00550 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00550 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00560 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00560 IPR003447 FemABX peptidyl transferase CFE88_RS00565 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS00565 IPR001036 Acriflavin resistance protein CFE88_RS00585 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00585 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS00585 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00590 IPR010651 Sugar transport protein CFE88_RS00595 IPR023406 DNA topoisomerase, type IA, active site CFE88_RS00595 IPR000380 DNA topoisomerase, type IA CFE88_RS00595 IPR034144 DNA topoisomerase 3-like, TOPRIM domain CFE88_RS00595 IPR013497 DNA topoisomerase, type IA, central CFE88_RS00595 IPR005738 DNA topoisomerase III CFE88_RS00595 IPR006171 TOPRIM domain CFE88_RS00595 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CFE88_RS00595 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS00595 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CFE88_RS00595 IPR003601 DNA topoisomerase, type IA, domain 2 CFE88_RS00595 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CFE88_RS00595 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS00600 IPR026033 Azaguanine-like transporters CFE88_RS00600 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS00610 IPR036838 Ribosomal protein S10 domain superfamily CFE88_RS00610 IPR027486 Ribosomal protein S10 domain CFE88_RS00610 IPR018268 Ribosomal protein S10, conserved site CFE88_RS00610 IPR001848 Ribosomal protein S10 CFE88_RS00615 IPR000597 Ribosomal protein L3 CFE88_RS00615 IPR019927 Ribosomal protein L3, bacterial/organelle-type CFE88_RS00615 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS00615 IPR019926 Ribosomal protein L3, conserved site CFE88_RS00620 IPR002136 Ribosomal protein L4/L1e CFE88_RS00620 IPR023574 Ribosomal protein L4 domain superfamily CFE88_RS00620 IPR013005 50S ribosomal protein uL4 CFE88_RS00625 IPR012678 Ribosomal protein L23/L15e core domain superfamily CFE88_RS00625 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CFE88_RS00625 IPR013025 Ribosomal protein L25/L23 CFE88_RS00630 IPR005880 Ribosomal protein L2, bacterial/organellar-type CFE88_RS00630 IPR014726 Ribosomal protein L2, domain 3 CFE88_RS00630 IPR022671 Ribosomal protein L2, conserved site CFE88_RS00630 IPR022669 Ribosomal protein L2, C-terminal CFE88_RS00630 IPR008991 Translation protein SH3-like domain superfamily CFE88_RS00630 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00630 IPR022666 Ribosomal Proteins L2, RNA binding domain CFE88_RS00630 IPR014722 Ribosomal protein L2, domain 2 CFE88_RS00630 IPR002171 Ribosomal protein L2 CFE88_RS00635 IPR005732 Ribosomal protein S19, bacterial-type CFE88_RS00635 IPR002222 Ribosomal protein S19/S15 CFE88_RS00635 IPR020934 Ribosomal protein S19 conserved site CFE88_RS00635 IPR023575 Ribosomal protein S19, superfamily CFE88_RS00640 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CFE88_RS00640 IPR001063 Ribosomal protein L22/L17 CFE88_RS00640 IPR018260 Ribosomal protein L22/L17, conserved site CFE88_RS00640 IPR036394 Ribosomal protein L22/L17 superfamily CFE88_RS00645 IPR009019 K homology domain superfamily, prokaryotic type CFE88_RS00645 IPR004044 K Homology domain, type 2 CFE88_RS00645 IPR015946 K homology domain-like, alpha/beta CFE88_RS00645 IPR005704 Ribosomal protein S3, bacterial-type CFE88_RS00645 IPR004087 K Homology domain CFE88_RS00645 IPR001351 Ribosomal protein S3, C-terminal CFE88_RS00645 IPR018280 Ribosomal protein S3, conserved site CFE88_RS00645 IPR036419 Ribosomal protein S3, C-terminal domain superfamily CFE88_RS00650 IPR020798 Ribosomal protein L16, conserved site CFE88_RS00650 IPR000114 Ribosomal protein L16 CFE88_RS00650 IPR036920 Ribosomal protein L10e/L16 superfamily CFE88_RS00650 IPR016180 Ribosomal protein L10e/L16 CFE88_RS00655 IPR036049 Ribosomal protein L29/L35 superfamily CFE88_RS00655 IPR001854 Ribosomal protein L29/L35 CFE88_RS00660 IPR019984 30S ribosomal protein S17 CFE88_RS00660 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00660 IPR019979 Ribosomal protein S17, conserved site CFE88_RS00660 IPR000266 Ribosomal protein S17/S11 CFE88_RS00665 IPR005745 Ribosomal protein L14P, bacterial-type CFE88_RS00665 IPR036853 Ribosomal protein L14 superfamily CFE88_RS00665 IPR000218 Ribosomal protein L14P CFE88_RS00665 IPR019972 Ribosomal protein L14P, conserved site CFE88_RS00670 IPR008991 Translation protein SH3-like domain superfamily CFE88_RS00670 IPR014722 Ribosomal protein L2, domain 2 CFE88_RS00670 IPR041988 Ribosomal Protein L26/L24, KOW domain CFE88_RS00670 IPR005824 KOW CFE88_RS00670 IPR003256 Ribosomal protein L24 CFE88_RS00670 IPR005825 Ribosomal protein L24/L26, conserved site CFE88_RS00675 IPR002132 Ribosomal protein L5 CFE88_RS00675 IPR022803 Ribosomal protein L5 domain superfamily CFE88_RS00675 IPR031310 Ribosomal protein L5, N-terminal CFE88_RS00675 IPR031309 Ribosomal protein L5, C-terminal CFE88_RS00675 IPR020930 Ribosomal protein L5, bacterial-type CFE88_RS00675 IPR020929 Ribosomal protein L5, conserved site CFE88_RS00680 IPR023053 Ribosomal protein S14, type Z CFE88_RS00680 IPR018271 Ribosomal protein S14, conserved site CFE88_RS00680 IPR001209 Ribosomal protein S14 CFE88_RS00685 IPR000630 Ribosomal protein S8 CFE88_RS00685 IPR035987 Ribosomal protein S8 superfamily CFE88_RS00690 IPR000702 Ribosomal protein L6 CFE88_RS00690 IPR020040 Ribosomal protein L6, alpha-beta domain CFE88_RS00690 IPR019906 Ribosomal protein L6, bacterial-type CFE88_RS00690 IPR002358 Ribosomal protein L6, conserved site CFE88_RS00690 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily CFE88_RS00695 IPR004389 Ribosomal protein L18, bacterial-type CFE88_RS00695 IPR005484 Ribosomal protein L18 CFE88_RS00700 IPR000851 Ribosomal protein S5 CFE88_RS00700 IPR005712 Ribosomal protein S5, bacterial-type CFE88_RS00700 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS00700 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00700 IPR005324 Ribosomal protein S5, C-terminal CFE88_RS00700 IPR018192 Ribosomal protein S5, N-terminal, conserved site CFE88_RS00700 IPR013810 Ribosomal protein S5, N-terminal CFE88_RS00705 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CFE88_RS00705 IPR005996 Ribosomal protein L30, bacterial-type CFE88_RS00705 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CFE88_RS00710 IPR021131 Ribosomal protein L18e/L15P CFE88_RS00710 IPR005749 Ribosomal protein L15, bacterial-type CFE88_RS00710 IPR030878 Ribosomal protein L15 CFE88_RS00710 IPR036227 Ribosomal L18e/L15P superfamily CFE88_RS00710 IPR001196 Ribosomal protein L15, conserved site CFE88_RS00715 IPR023201 SecY domain superfamily CFE88_RS00715 IPR030659 SecY conserved site CFE88_RS00715 IPR002208 SecY/SEC61-alpha family CFE88_RS00715 IPR026593 Protein translocase subunit SecY CFE88_RS00720 IPR000850 Adenylate kinase/UMP-CMP kinase CFE88_RS00720 IPR033690 Adenylate kinase, conserved site CFE88_RS00720 IPR007862 Adenylate kinase, active site lid domain CFE88_RS00720 IPR008144 Guanylate kinase-like domain CFE88_RS00720 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00720 IPR006259 Adenylate kinase subfamily CFE88_RS00725 IPR006196 RNA-binding domain, S1, IF1 type CFE88_RS00725 IPR022967 RNA-binding domain, S1 CFE88_RS00725 IPR004368 Translation initiation factor IF-1 CFE88_RS00725 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00730 IPR000473 Ribosomal protein L36 CFE88_RS00730 IPR035977 Ribosomal protein L36 superfamily CFE88_RS00735 IPR018269 Ribosomal protein S13, conserved site CFE88_RS00735 IPR019980 Ribosomal protein S13, bacterial-type CFE88_RS00735 IPR010979 Ribosomal protein S13-like, H2TH CFE88_RS00735 IPR027437 30s ribosomal protein S13, C-terminal CFE88_RS00735 IPR001892 Ribosomal protein S13 CFE88_RS00740 IPR001971 Ribosomal protein S11 CFE88_RS00740 IPR018102 Ribosomal S11, conserved site CFE88_RS00740 IPR019981 Ribosomal protein S11, bacterial-type CFE88_RS00740 IPR036967 Ribosomal protein S11 superfamily CFE88_RS00745 IPR011260 RNA polymerase, alpha subunit, C-terminal CFE88_RS00745 IPR011773 DNA-directed RNA polymerase, alpha subunit CFE88_RS00745 IPR036643 DNA-directed RNA polymerase, insert domain superfamily CFE88_RS00745 IPR036603 RNA polymerase, RBP11-like subunit CFE88_RS00745 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CFE88_RS00745 IPR011262 DNA-directed RNA polymerase, insert domain CFE88_RS00750 IPR000456 Ribosomal protein L17 CFE88_RS00750 IPR036373 Ribosomal protein L17 superfamily CFE88_RS00755 IPR003593 AAA+ ATPase domain CFE88_RS00755 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00755 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CFE88_RS00755 IPR003439 ABC transporter-like CFE88_RS00755 IPR017871 ABC transporter, conserved site CFE88_RS00755 IPR015856 ABC transporter, CbiO/EcfA subunit CFE88_RS00760 IPR015856 ABC transporter, CbiO/EcfA subunit CFE88_RS00760 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CFE88_RS00760 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00760 IPR003439 ABC transporter-like CFE88_RS00760 IPR017871 ABC transporter, conserved site CFE88_RS00760 IPR003593 AAA+ ATPase domain CFE88_RS00765 IPR024919 ECF transporter transmembrane protein EcfT CFE88_RS00765 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS00770 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CFE88_RS00770 IPR020095 Pseudouridine synthase I, TruA, C-terminal CFE88_RS00770 IPR001406 Pseudouridine synthase I, TruA CFE88_RS00770 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS00775 IPR005822 Ribosomal protein L13 CFE88_RS00775 IPR023563 Ribosomal protein L13, conserved site CFE88_RS00775 IPR036899 Ribosomal protein L13 superfamily CFE88_RS00775 IPR005823 Ribosomal protein L13, bacterial-type CFE88_RS00780 IPR020574 Ribosomal protein S9, conserved site CFE88_RS00780 IPR023035 Ribosomal protein S9, bacterial/plastid CFE88_RS00780 IPR000754 Ribosomal protein S9 CFE88_RS00780 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00780 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS00785 IPR026591 Sirtuin, catalytic core small domain superfamily CFE88_RS00785 IPR028628 Sirtuin, class U CFE88_RS00785 IPR026590 Sirtuin family, catalytic core domain CFE88_RS00785 IPR029035 DHS-like NAD/FAD-binding domain superfamily CFE88_RS00785 IPR003000 Sirtuin family CFE88_RS00790 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS00790 IPR001034 DeoR-type HTH domain CFE88_RS00790 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS00790 IPR014036 DeoR C-terminal sensor domain CFE88_RS00790 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CFE88_RS00790 IPR037171 NagB/RpiA transferase-like CFE88_RS00795 IPR004783 Galactose-6-phosphate isomerase subunit LacA CFE88_RS00795 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CFE88_RS00795 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily CFE88_RS00800 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily CFE88_RS00800 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CFE88_RS00800 IPR004784 Galactose-6-phosphate isomerase subunit LacB CFE88_RS00805 IPR017583 Tagatose/fructose phosphokinase CFE88_RS00805 IPR029056 Ribokinase-like CFE88_RS00805 IPR011611 Carbohydrate kinase PfkB CFE88_RS00805 IPR005926 Tagatose-6-phosphate kinase CFE88_RS00805 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS00810 IPR013785 Aldolase-type TIM barrel CFE88_RS00810 IPR005927 Tagatose 1,6-diphosphate aldolase CFE88_RS00810 IPR002915 DeoC/FbaB/ lacD aldolase CFE88_RS00815 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily CFE88_RS00815 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit CFE88_RS00820 IPR004501 Phosphotransferase system, EIIC component, type 3 CFE88_RS00820 IPR003352 Phosphotransferase system, EIIC CFE88_RS00820 IPR041713 PTS system lactose-specific EIICB component, IIB domain CFE88_RS00820 IPR013012 Phosphotransferase system, EIIB component, type 3 CFE88_RS00820 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS00820 IPR036095 PTS system IIB component-like superfamily CFE88_RS00820 IPR004801 Phosphotransferase system, lactose-specific IIC component CFE88_RS00825 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CFE88_RS00825 IPR017853 Glycoside hydrolase superfamily CFE88_RS00825 IPR005928 6-phospho-beta-galactosidase CFE88_RS00825 IPR001360 Glycoside hydrolase family 1 CFE88_RS00825 IPR018120 Glycoside hydrolase family 1, active site CFE88_RS00835 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS00835 IPR036661 Luciferase-like domain superfamily CFE88_RS00835 IPR011251 Luciferase-like domain CFE88_RS00840 IPR020843 Polyketide synthase, enoylreductase domain CFE88_RS00840 IPR041694 Oxidoreductase, N-terminal domain CFE88_RS00840 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00840 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00840 IPR011032 GroES-like superfamily CFE88_RS00845 IPR036291 NAD(P)-binding domain superfamily CFE88_RS00845 IPR020843 Polyketide synthase, enoylreductase domain CFE88_RS00845 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site CFE88_RS00845 IPR011032 GroES-like superfamily CFE88_RS00845 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00845 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 CFE88_RS00845 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS00860 IPR005531 Alkaline shock protein Asp23 CFE88_RS00865 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00865 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like CFE88_RS00865 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal CFE88_RS00870 IPR036259 MFS transporter superfamily CFE88_RS00870 IPR010290 Transmembrane secretion effector CFE88_RS00870 IPR020846 Major facilitator superfamily domain CFE88_RS00875 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like CFE88_RS00875 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal CFE88_RS00875 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00880 IPR001608 Alanine racemase, N-terminal CFE88_RS00880 IPR029066 PLP-binding barrel CFE88_RS00885 IPR002491 ABC transporter periplasmic binding domain CFE88_RS00890 IPR000522 ABC transporter, permease protein, BtuC-like CFE88_RS00890 IPR037294 ABC transporter, BtuC-like CFE88_RS00895 IPR000522 ABC transporter, permease protein, BtuC-like CFE88_RS00895 IPR037294 ABC transporter, BtuC-like CFE88_RS00900 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CFE88_RS00905 IPR007138 Antibiotic biosynthesis monooxygenase domain CFE88_RS00905 IPR011008 Dimeric alpha-beta barrel CFE88_RS00905 IPR023953 Heme oxygenase IsdG CFE88_RS00915 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS00920 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00920 IPR002618 UDPGP family CFE88_RS00920 IPR039741 UDP-sugar pyrophosphorylase CFE88_RS00930 IPR020846 Major facilitator superfamily domain CFE88_RS00930 IPR036259 MFS transporter superfamily CFE88_RS00930 IPR011701 Major facilitator superfamily CFE88_RS00935 IPR031396 Multidrug resistance efflux pump SepA CFE88_RS00940 IPR011701 Major facilitator superfamily CFE88_RS00940 IPR020846 Major facilitator superfamily domain CFE88_RS00940 IPR036259 MFS transporter superfamily CFE88_RS00940 IPR004638 Drug resistance transporter EmrB-like CFE88_RS00945 IPR019591 Mrp/NBP35 ATP-binding protein CFE88_RS00945 IPR000808 Mrp, conserved site CFE88_RS00945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00945 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CFE88_RS00995 IPR034701 Diadenylate cyclase CdaA CFE88_RS00995 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CFE88_RS00995 IPR003390 DNA integrity scanning protein, DisA, N-terminal CFE88_RS00995 IPR014046 Diadenylate cyclase CFE88_RS01005 IPR016066 Alpha-D-phosphohexomutase, conserved site CFE88_RS01005 IPR005841 Alpha-D-phosphohexomutase superfamily CFE88_RS01005 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CFE88_RS01005 IPR005843 Alpha-D-phosphohexomutase, C-terminal CFE88_RS01005 IPR006352 Phosphoglucosamine mutase, bacterial type CFE88_RS01005 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CFE88_RS01005 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CFE88_RS01005 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CFE88_RS01005 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CFE88_RS01010 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS01010 IPR035466 GlmS/AgaS, SIS domain 1 CFE88_RS01010 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS01010 IPR035490 GlmS/FrlB, SIS domain 2 CFE88_RS01010 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CFE88_RS01010 IPR001347 Sugar isomerase (SIS) CFE88_RS01015 IPR023214 HAD superfamily CFE88_RS01015 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS01015 IPR036412 HAD-like superfamily CFE88_RS01030 IPR002524 Cation efflux protein CFE88_RS01030 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS01030 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CFE88_RS01030 IPR027469 Cation efflux transmembrane domain superfamily CFE88_RS01035 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS01035 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS01035 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS01035 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS01035 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS01040 IPR036291 NAD(P)-binding domain superfamily CFE88_RS01040 IPR016040 NAD(P)-binding domain CFE88_RS01050 IPR014710 RmlC-like jelly roll fold CFE88_RS01050 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CFE88_RS01050 IPR001250 Mannose-6-phosphate isomerase, type I CFE88_RS01050 IPR011051 RmlC-like cupin domain superfamily CFE88_RS01075 IPR012347 Ferritin-like CFE88_RS01075 IPR002177 DNA-binding protein Dps CFE88_RS01075 IPR023188 DNA-binding protein Dps, conserved site CFE88_RS01075 IPR009078 Ferritin-like superfamily CFE88_RS01075 IPR008331 Ferritin/DPS protein domain CFE88_RS01080 IPR035994 Nucleoside phosphorylase superfamily CFE88_RS01080 IPR018016 Nucleoside phosphorylase, conserved site CFE88_RS01080 IPR004402 Purine nucleoside phosphorylase DeoD-type CFE88_RS01080 IPR000845 Nucleoside phosphorylase domain CFE88_RS01085 IPR013785 Aldolase-type TIM barrel CFE88_RS01085 IPR028581 Deoxyribose-phosphate aldolase type I CFE88_RS01085 IPR002915 DeoC/FbaB/ lacD aldolase CFE88_RS01085 IPR011343 Deoxyribose-phosphate aldolase CFE88_RS01090 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal CFE88_RS01090 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site CFE88_RS01090 IPR000312 Glycosyl transferase, family 3 CFE88_RS01090 IPR017459 Glycosyl transferase family 3, N-terminal domain CFE88_RS01090 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily CFE88_RS01090 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic CFE88_RS01090 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase CFE88_RS01090 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CFE88_RS01090 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CFE88_RS01095 IPR024052 Phosphopentomutase DeoB cap domain superfamily CFE88_RS01095 IPR006124 Metalloenzyme CFE88_RS01095 IPR010045 Phosphopentomutase CFE88_RS01095 IPR017850 Alkaline-phosphatase-like, core domain superfamily CFE88_RS01105 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily CFE88_RS01105 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS01105 IPR003815 S-ribosylhomocysteinase (LuxS) CFE88_RS01125 IPR011602 Type II pantothenate kinase, bacterial CFE88_RS01125 IPR004567 Type II pantothenate kinase CFE88_RS01135 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily CFE88_RS01135 IPR029757 DNA-directed RNA polymerase subunit delta CFE88_RS01135 IPR007759 HB1/Asxl, restriction endonuclease HTH domain CFE88_RS01140 IPR004468 CTP synthase CFE88_RS01140 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01140 IPR033828 CTP synthase GATase domain CFE88_RS01140 IPR017926 Glutamine amidotransferase CFE88_RS01140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01140 IPR017456 CTP synthase, N-terminal CFE88_RS01150 IPR013785 Aldolase-type TIM barrel CFE88_RS01150 IPR000771 Fructose-bisphosphate aldolase, class-II CFE88_RS01150 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 CFE88_RS01155 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS01155 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CFE88_RS01155 IPR001986 Enolpyruvate transferase domain CFE88_RS01155 IPR036968 Enolpyruvate transferase domain superfamily CFE88_RS01160 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS01160 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS01160 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS01160 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS01160 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS01160 IPR015590 Aldehyde dehydrogenase domain CFE88_RS01165 IPR003593 AAA+ ATPase domain CFE88_RS01165 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01165 IPR011129 Cold shock domain CFE88_RS01165 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01165 IPR041703 Transcription termination factor Rho, ATP binding domain CFE88_RS01165 IPR011112 Rho termination factor, N-terminal CFE88_RS01165 IPR036269 Rho termination factor, N-terminal domain superfamily CFE88_RS01165 IPR011113 Rho termination factor, RNA-binding domain CFE88_RS01165 IPR004665 Transcription termination factor Rho CFE88_RS01170 IPR034704 L28p-like CFE88_RS01170 IPR027493 Ribosomal protein L31 type B CFE88_RS01170 IPR002150 Ribosomal protein L31 CFE88_RS01170 IPR042105 Ribosomal protein L31 superfamily CFE88_RS01175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01175 IPR020633 Thymidine kinase, conserved site CFE88_RS01175 IPR001267 Thymidine kinase CFE88_RS01180 IPR000352 Peptide chain release factor class I CFE88_RS01180 IPR005139 Peptide chain release factor CFE88_RS01180 IPR004373 Peptide chain release factor 1 CFE88_RS01185 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CFE88_RS01185 IPR007848 Methyltransferase small domain CFE88_RS01185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS01185 IPR040758 Release factor glutamine methyltransferase, N-terminal domain CFE88_RS01185 IPR004556 Methyltransferase HemK-like CFE88_RS01185 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CFE88_RS01195 IPR006070 YrdC-like domain CFE88_RS01195 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CFE88_RS01195 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily CFE88_RS01195 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CFE88_RS01195 IPR005145 Putative GTP-binding controlling metal-binding domain CFE88_RS01200 IPR017867 Protein-tyrosine phosphatase, low molecular weight CFE88_RS01200 IPR036196 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01200 IPR023485 Phosphotyrosine protein phosphatase I CFE88_RS01205 IPR028345 Aminoglycoside 3-N-acetyltransferase-like CFE88_RS01205 IPR006340 Protein of unknown function DUF436 CFE88_RS01210 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS01210 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS01210 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS01210 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CFE88_RS01210 IPR001085 Serine hydroxymethyltransferase CFE88_RS01210 IPR039429 Serine hydroxymethyltransferase-like domain CFE88_RS01215 IPR034332 Uracil phosphoribosyltransferase, bacterial-type CFE88_RS01215 IPR000836 Phosphoribosyltransferase domain CFE88_RS01215 IPR005765 Uracil phosphoribosyl transferase CFE88_RS01215 IPR029057 Phosphoribosyltransferase-like CFE88_RS01220 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CFE88_RS01220 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CFE88_RS01225 IPR005598 ATP synthase protein I CFE88_RS01225 IPR039072 ATP synthase protein I, Bacilli-type CFE88_RS01230 IPR000568 ATP synthase, F0 complex, subunit A CFE88_RS01230 IPR035908 ATP synthase, F0 complex, subunit A superfamily CFE88_RS01230 IPR023011 ATP synthase, F0 complex, subunit A, active site CFE88_RS01235 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast CFE88_RS01235 IPR000454 ATP synthase, F0 complex, subunit C CFE88_RS01235 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site CFE88_RS01235 IPR038662 F1F0 ATP synthase subunit C superfamily CFE88_RS01235 IPR002379 V-ATPase proteolipid subunit C-like domain CFE88_RS01235 IPR035921 F/V-ATP synthase subunit C superfamily CFE88_RS01240 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CFE88_RS01240 IPR005864 ATP synthase, F0 complex, subunit b, bacterial CFE88_RS01240 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast CFE88_RS01245 IPR000711 ATPase, OSCP/delta subunit CFE88_RS01245 IPR020781 ATPase, OSCP/delta subunit, conserved site CFE88_RS01245 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily CFE88_RS01250 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CFE88_RS01250 IPR000793 ATP synthase, alpha subunit, C-terminal CFE88_RS01250 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily CFE88_RS01250 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain CFE88_RS01250 IPR005294 ATP synthase, F1 complex, alpha subunit CFE88_RS01250 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CFE88_RS01250 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01250 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01250 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CFE88_RS01250 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CFE88_RS01255 IPR000131 ATP synthase, F1 complex, gamma subunit CFE88_RS01255 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily CFE88_RS01260 IPR003593 AAA+ ATPase domain CFE88_RS01260 IPR005722 ATP synthase, F1 complex, beta subunit CFE88_RS01260 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CFE88_RS01260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01260 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CFE88_RS01260 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01260 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CFE88_RS01260 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CFE88_RS01265 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CFE88_RS01265 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal CFE88_RS01265 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal CFE88_RS01265 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit CFE88_RS01265 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily CFE88_RS01275 IPR001986 Enolpyruvate transferase domain CFE88_RS01275 IPR036968 Enolpyruvate transferase domain superfamily CFE88_RS01275 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS01275 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CFE88_RS01280 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CFE88_RS01280 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CFE88_RS01280 IPR029069 HotDog domain superfamily CFE88_RS01290 IPR011344 Single-stranded DNA-binding protein CFE88_RS01290 IPR000424 Primosome PriB/single-strand DNA-binding CFE88_RS01290 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01295 IPR010618 Transglycosylase-like CFE88_RS01295 IPR023346 Lysozyme-like domain superfamily CFE88_RS01300 IPR004305 Thiaminase-2/PQQC CFE88_RS01300 IPR016084 Haem oxygenase-like, multi-helical CFE88_RS01300 IPR027574 Thiaminase II CFE88_RS01305 IPR029056 Ribokinase-like CFE88_RS01305 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CFE88_RS01305 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CFE88_RS01310 IPR000417 Hydroxyethylthiazole kinase CFE88_RS01310 IPR029056 Ribokinase-like CFE88_RS01315 IPR013785 Aldolase-type TIM barrel CFE88_RS01315 IPR022998 Thiamine phosphate synthase/TenI CFE88_RS01315 IPR034291 Thiamine phosphate synthase CFE88_RS01315 IPR036206 Thiamin phosphate synthase superfamily CFE88_RS01320 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CFE88_RS01320 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS01320 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CFE88_RS01325 IPR006674 HD domain CFE88_RS01325 IPR003607 HD/PDEase domain CFE88_RS01330 IPR030874 Cardiolipin synthase, Firmicutes-type CFE88_RS01330 IPR022924 Cardiolipin synthase CFE88_RS01330 IPR001736 Phospholipase D/Transphosphatidylase CFE88_RS01330 IPR025202 Phospholipase D-like domain CFE88_RS01330 IPR027379 Cardiolipin synthase N-terminal CFE88_RS01335 IPR038390 Metal-sensitive transcriptional repressor superfamily CFE88_RS01335 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS01350 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CFE88_RS01350 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB CFE88_RS01350 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CFE88_RS01355 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS01355 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS01355 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CFE88_RS01355 IPR011095 D-alanine--D-alanine ligase, C-terminal CFE88_RS01355 IPR011761 ATP-grasp fold CFE88_RS01355 IPR005905 D-alanine--D-alanine ligase CFE88_RS01355 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CFE88_RS01360 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase CFE88_RS01360 IPR000713 Mur ligase, N-terminal catalytic domain CFE88_RS01360 IPR036615 Mur ligase, C-terminal domain superfamily CFE88_RS01360 IPR035911 MurE/MurF, N-terminal CFE88_RS01360 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS01360 IPR004101 Mur ligase, C-terminal CFE88_RS01360 IPR013221 Mur ligase, central CFE88_RS01365 IPR001650 Helicase, C-terminal CFE88_RS01365 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01365 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CFE88_RS01365 IPR014014 RNA helicase, DEAD-box type, Q motif CFE88_RS01365 IPR030880 DEAD-box ATP-dependent RNA helicase CshA CFE88_RS01365 IPR011545 DEAD/DEAH box helicase domain CFE88_RS01365 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS01375 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 IPR014529 Uncharacterised conserved protein UCP026631 CFE88_RS01380 IPR005182 Domain of unknown function DUF304 CFE88_RS01385 IPR002582 Holo-[acyl carrier protein] synthase CFE88_RS01385 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CFE88_RS01385 IPR008278 4'-phosphopantetheinyl transferase domain CFE88_RS01385 IPR004568 Phosphopantetheine-protein transferase domain CFE88_RS01390 IPR000821 Alanine racemase CFE88_RS01390 IPR011079 Alanine racemase, C-terminal CFE88_RS01390 IPR001608 Alanine racemase, N-terminal CFE88_RS01390 IPR029066 PLP-binding barrel CFE88_RS01390 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CFE88_RS01390 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS01395 IPR013321 Arc-type ribbon-helix-helix CFE88_RS01400 IPR003477 mRNA interferase PemK-like CFE88_RS01400 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS01405 IPR017944 KaiA/RbsU helical domain superfamily CFE88_RS01405 IPR014787 Phosphoserine phosphatase RsbU, N-terminal CFE88_RS01405 IPR001932 PPM-type phosphatase domain CFE88_RS01405 IPR036457 PPM-type phosphatase domain superfamily CFE88_RS01410 IPR002645 STAS domain CFE88_RS01410 IPR036513 STAS domain superfamily CFE88_RS01410 IPR003658 Anti-sigma factor antagonist CFE88_RS01415 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS01415 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS01415 IPR010193 Serine-protein kinase RsbW CFE88_RS01420 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS01420 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS01420 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS01420 IPR013324 RNA polymerase sigma factor, region 3/4-like CFE88_RS01420 IPR014288 RNA polymerase sigma-B factor CFE88_RS01420 IPR000943 RNA polymerase sigma-70 CFE88_RS01420 IPR007630 RNA polymerase sigma-70 region 4 CFE88_RS01420 IPR014322 RNA polymerase sigma-B/F/G type CFE88_RS01420 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS01420 IPR007624 RNA polymerase sigma-70 region 3 CFE88_RS01425 IPR023319 Tex-like protein, HTH domain superfamily CFE88_RS01425 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01425 IPR037027 YqgF/RNase H-like domain superfamily CFE88_RS01425 IPR006641 YqgF/RNase H-like domain CFE88_RS01425 IPR010994 RuvA domain 2-like CFE88_RS01425 IPR022967 RNA-binding domain, S1 CFE88_RS01425 IPR012337 Ribonuclease H-like superfamily CFE88_RS01425 IPR032639 Tex protein, YqgF-like domain CFE88_RS01425 IPR003029 S1 domain CFE88_RS01425 IPR023323 Tex-like domain superfamily CFE88_RS01425 IPR041692 HHH domain 9 CFE88_RS01425 IPR018974 Tex-like protein, N-terminal CFE88_RS01430 IPR006640 SprT-like CFE88_RS01430 IPR023524 Uncharacterised protein family SprT-like CFE88_RS01465 IPR001926 Pyridoxal-phosphate dependent enzyme CFE88_RS01465 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CFE88_RS01465 IPR001721 Threonine dehydratase, ACT-like domain CFE88_RS01465 IPR038110 Threonine dehydratase, ACT-like domain superfamily CFE88_RS01465 IPR011820 L-threonine dehydratase biosynthetic IlvA CFE88_RS01465 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS01470 IPR004431 3-isopropylmalate dehydratase, small subunit CFE88_RS01470 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS01470 IPR033940 3-isopropylmalate dehydratase, swivel domain CFE88_RS01470 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CFE88_RS01475 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CFE88_RS01475 IPR033941 3-Isopropylmalate dehydratase, catalytic domain CFE88_RS01475 IPR018136 Aconitase family, 4Fe-4S cluster binding site CFE88_RS01475 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CFE88_RS01475 IPR004430 3-isopropylmalate dehydratase, large subunit CFE88_RS01475 IPR036008 Aconitase, iron-sulfur domain CFE88_RS01480 IPR004429 Isopropylmalate dehydrogenase CFE88_RS01480 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CFE88_RS01480 IPR024084 Isopropylmalate dehydrogenase-like domain CFE88_RS01485 IPR005671 2-isopropylmalate synthase, bacterial-type CFE88_RS01485 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily CFE88_RS01485 IPR000891 Pyruvate carboxyltransferase CFE88_RS01485 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site CFE88_RS01485 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain CFE88_RS01485 IPR013785 Aldolase-type TIM barrel CFE88_RS01490 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS01490 IPR036291 NAD(P)-binding domain superfamily CFE88_RS01490 IPR014359 Ketol-acid reductoisomerase, prokaryotic CFE88_RS01490 IPR000506 Ketol-acid reductoisomerase, C-terminal CFE88_RS01490 IPR013023 Ketol-acid reductoisomerase CFE88_RS01490 IPR013116 Ketol-acid reductoisomerase, N-terminal CFE88_RS01500 IPR012846 Acetolactate synthase, large subunit, biosynthetic CFE88_RS01500 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS01500 IPR039368 Acetolactate synthase large subunit, TPP binding domain CFE88_RS01500 IPR029035 DHS-like NAD/FAD-binding domain superfamily CFE88_RS01500 IPR029061 Thiamin diphosphate-binding fold CFE88_RS01500 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS01500 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS01505 IPR004404 Dihydroxy-acid dehydratase CFE88_RS01505 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CFE88_RS01505 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CFE88_RS01505 IPR037237 IlvD/EDD, N-terminal domain CFE88_RS01505 IPR042096 Dihydroxy-acid dehydratase, C-terminal CFE88_RS01510 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CFE88_RS01510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01515 IPR000905 Gcp-like domain CFE88_RS01515 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB CFE88_RS01520 IPR000182 GNAT domain CFE88_RS01520 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01520 IPR006464 N-acetyltransferase RimI/Ard1 CFE88_RS01525 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CFE88_RS01525 IPR000905 Gcp-like domain CFE88_RS01525 IPR017861 Kae1/TsaD family CFE88_RS01525 IPR017860 Peptidase M22, conserved site CFE88_RS01530 IPR007861 DNA mismatch repair protein MutS, clamp CFE88_RS01530 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS01530 IPR017261 DNA mismatch repair protein MutS/MSH CFE88_RS01530 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CFE88_RS01530 IPR016151 DNA mismatch repair protein MutS, N-terminal CFE88_RS01530 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CFE88_RS01530 IPR005748 DNA mismatch repair protein MutS CFE88_RS01530 IPR036678 MutS, connector domain superfamily CFE88_RS01530 IPR007860 DNA mismatch repair protein MutS, connector domain CFE88_RS01530 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01530 IPR007696 DNA mismatch repair protein MutS, core CFE88_RS01535 IPR003593 AAA+ ATPase domain CFE88_RS01535 IPR032524 ABC transporter Uup, C-terminal CFE88_RS01535 IPR032781 ABC-transporter extension domain CFE88_RS01535 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CFE88_RS01535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 IPR017871 ABC transporter, conserved site CFE88_RS01535 IPR003439 ABC transporter-like CFE88_RS01540 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS01540 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS01540 IPR003781 CoA-binding CFE88_RS01540 IPR036291 NAD(P)-binding domain superfamily CFE88_RS01540 IPR009718 Rex DNA-binding, C-terminal domain CFE88_RS01540 IPR022876 Redox-sensing transcriptional repressor Rex CFE88_RS01550 IPR007272 Sulphur transport domain CFE88_RS01555 IPR001455 TusA-like domain CFE88_RS01555 IPR036868 TusA-like domain superfamily CFE88_RS01560 IPR024041 Ammonium transporter AmtB-like domain CFE88_RS01560 IPR018047 Ammonium transporter, conserved site CFE88_RS01560 IPR001905 Ammonium transporter CFE88_RS01560 IPR029020 Ammonium/urea transporter CFE88_RS01565 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CFE88_RS01565 IPR000843 LacI-type HTH domain CFE88_RS01565 IPR025997 Periplasmic binding protein CFE88_RS01565 IPR028082 Periplasmic binding protein-like I CFE88_RS01575 IPR006232 Sucrose-6-phosphate hydrolase CFE88_RS01575 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CFE88_RS01575 IPR001362 Glycoside hydrolase, family 32 CFE88_RS01575 IPR018053 Glycoside hydrolase, family 32, active site CFE88_RS01575 IPR013189 Glycosyl hydrolase family 32, C-terminal CFE88_RS01575 IPR013148 Glycosyl hydrolase family 32, N-terminal CFE88_RS01575 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CFE88_RS01580 IPR029056 Ribokinase-like CFE88_RS01580 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS01580 IPR011611 Carbohydrate kinase PfkB CFE88_RS01585 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS01585 IPR007492 LytTR DNA-binding domain CFE88_RS01585 IPR011006 CheY-like superfamily CFE88_RS01590 IPR005467 Histidine kinase domain CFE88_RS01590 IPR013767 PAS fold CFE88_RS01590 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS01590 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS01590 IPR039506 SpoOB, alpha-helical domain CFE88_RS01590 IPR000014 PAS domain CFE88_RS01590 IPR029151 Periplasmic sensor-like domain superfamily CFE88_RS01590 IPR033463 Single cache domain 3 CFE88_RS01590 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CFE88_RS01590 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS01600 IPR006741 Accessory gene regulator B CFE88_RS01605 IPR008034 Delta-hemolysin CFE88_RS01610 IPR036526 Carbon-nitrogen hydrolase superfamily CFE88_RS01610 IPR001110 Uncharacterised protein family UPF0012, conserved site CFE88_RS01610 IPR003010 Carbon-nitrogen hydrolase CFE88_RS01620 IPR003675 CAAX prenyl protease 2 CFE88_RS01625 IPR020818 GroES chaperonin family CFE88_RS01625 IPR018369 Chaperonin GroES, conserved site CFE88_RS01625 IPR011032 GroES-like superfamily CFE88_RS01625 IPR037124 GroES chaperonin superfamily CFE88_RS01630 IPR018370 Chaperonin Cpn60, conserved site CFE88_RS01630 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CFE88_RS01630 IPR001844 Chaperonin Cpn60 CFE88_RS01630 IPR002423 Chaperonin Cpn60/TCP-1 family CFE88_RS01630 IPR027413 GroEL-like equatorial domain superfamily CFE88_RS01630 IPR027409 GroEL-like apical domain superfamily CFE88_RS01675 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS01675 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS01675 IPR000524 Transcription regulator HTH, GntR CFE88_RS01680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01680 IPR003439 ABC transporter-like CFE88_RS01680 IPR017871 ABC transporter, conserved site CFE88_RS01680 IPR022501 Gallidermin ABC transporter, ATP-binding subunit CFE88_RS01680 IPR003593 AAA+ ATPase domain CFE88_RS01690 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01690 IPR003439 ABC transporter-like CFE88_RS01690 IPR017871 ABC transporter, conserved site CFE88_RS01690 IPR003593 AAA+ ATPase domain CFE88_RS01735 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily CFE88_RS01735 IPR019405 Lactonase, 7-bladed beta propeller CFE88_RS01735 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CFE88_RS01740 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS01740 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS01740 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS01740 IPR015590 Aldehyde dehydrogenase domain CFE88_RS01740 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS01740 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS01740 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CFE88_RS01745 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable CFE88_RS01745 IPR001667 DDH domain CFE88_RS01745 IPR038763 DHH phosphoesterase superfamily CFE88_RS01745 IPR004097 DHHA2 domain CFE88_RS01745 IPR038222 DHHA2 domain superfamily CFE88_RS01750 IPR000868 Isochorismatase-like CFE88_RS01750 IPR036380 Isochorismatase-like superfamily CFE88_RS01760 IPR001086 Prephenate dehydratase CFE88_RS01760 IPR018528 Prephenate dehydratase, conserved site CFE88_RS01760 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase CFE88_RS01760 IPR002912 ACT domain CFE88_RS01765 IPR036119 Nitric oxide synthase, N-terminal domain superfamily CFE88_RS01765 IPR004030 Nitric oxide synthase, N-terminal CFE88_RS01765 IPR017142 Nitric oxide synthase, oxygenase subunit CFE88_RS01770 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CFE88_RS01770 IPR006405 Nicotinate phosphoribosyltransferase pncB-type CFE88_RS01770 IPR007229 Nicotinate phosphoribosyltransferase family CFE88_RS01770 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain CFE88_RS01770 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain CFE88_RS01770 IPR013785 Aldolase-type TIM barrel CFE88_RS01770 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase CFE88_RS01775 IPR022310 NAD/GMP synthase CFE88_RS01775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS01775 IPR003694 NAD(+) synthetase CFE88_RS01775 IPR022926 NH(3)-dependent NAD(+) synthetase CFE88_RS01780 IPR019264 Domain of unknown function DUF2179 CFE88_RS01780 IPR022930 Protein of unknown function UPF0316 CFE88_RS01785 IPR025930 NETI protein CFE88_RS01790 IPR022761 Fumarate lyase, N-terminal CFE88_RS01790 IPR019468 Adenylosuccinate lyase C-terminal CFE88_RS01790 IPR004769 Adenylosuccinate lyase CFE88_RS01790 IPR000362 Fumarate lyase family CFE88_RS01790 IPR008948 L-Aspartase-like CFE88_RS01790 IPR024083 Fumarase/histidase, N-terminal CFE88_RS01790 IPR020557 Fumarate lyase, conserved site CFE88_RS01795 IPR013368 TrpR homologue YerC/YecD CFE88_RS01795 IPR038116 TrpR-like superfamily CFE88_RS01795 IPR010921 Trp repressor/replication initiator CFE88_RS01795 IPR000831 Trp repressor CFE88_RS01800 IPR038597 GGGP/HepGP synthase superfamily CFE88_RS01800 IPR039074 GGGP/HepGP synthase group I CFE88_RS01800 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase CFE88_RS01805 IPR013986 DExx box DNA helicase domain superfamily CFE88_RS01805 IPR014017 UvrD-like DNA helicase, C-terminal CFE88_RS01805 IPR000212 DNA helicase, UvrD/REP type CFE88_RS01805 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01805 IPR005751 ATP-dependent DNA helicase PcrA CFE88_RS01805 IPR034739 UvrD/AddA helicase, N-terminal CFE88_RS01805 IPR014016 UvrD-like helicase, ATP-binding domain CFE88_RS01810 IPR036420 BRCT domain superfamily CFE88_RS01810 IPR041663 DisA/LigA, helix-hairpin-helix motif CFE88_RS01810 IPR004150 NAD-dependent DNA ligase, OB-fold CFE88_RS01810 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01810 IPR001679 NAD-dependent DNA ligase CFE88_RS01810 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS01810 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CFE88_RS01810 IPR010994 RuvA domain 2-like CFE88_RS01810 IPR033136 NAD-dependent DNA ligase, conserved site CFE88_RS01810 IPR018239 NAD-dependent DNA ligase, active site CFE88_RS01810 IPR013840 NAD-dependent DNA ligase, N-terminal CFE88_RS01810 IPR013839 NAD-dependent DNA ligase, adenylation CFE88_RS01810 IPR001357 BRCT domain CFE88_RS01815 IPR011426 CamS sex pheromone cAM373 CFE88_RS01820 IPR038377 Sodium/glucose symporter superfamily CFE88_RS01820 IPR011851 Sodium/proline symporter CFE88_RS01820 IPR001734 Sodium/solute symporter CFE88_RS01825 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C CFE88_RS01825 IPR003837 Glu-tRNAGln amidotransferase C subunit CFE88_RS01830 IPR023631 Amidase signature domain CFE88_RS01830 IPR036928 Amidase signature (AS) superfamily CFE88_RS01830 IPR000120 Amidase CFE88_RS01830 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CFE88_RS01830 IPR020556 Amidase, conserved site CFE88_RS01835 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CFE88_RS01835 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E CFE88_RS01835 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CFE88_RS01835 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CFE88_RS01835 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 CFE88_RS01835 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CFE88_RS01835 IPR018027 Asn/Gln amidotransferase CFE88_RS01835 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CFE88_RS01835 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CFE88_RS01840 IPR001206 Diacylglycerol kinase, catalytic domain CFE88_RS01840 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CFE88_RS01840 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CFE88_RS01840 IPR005218 Diacylglycerol/lipid kinase CFE88_RS01845 IPR030390 RNA methyltransferase TrmA, active site CFE88_RS01845 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01845 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS01845 IPR002792 TRAM domain CFE88_RS01845 IPR010280 (Uracil-5)-methyltransferase family CFE88_RS01845 IPR030391 RNA methyltransferase TrmA, conserved site CFE88_RS01855 IPR022880 DNA polymerase IV CFE88_RS01855 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CFE88_RS01855 IPR001126 UmuC domain CFE88_RS01855 IPR017961 DNA polymerase, Y-family, little finger domain CFE88_RS01865 IPR012347 Ferritin-like CFE88_RS01865 IPR001519 Ferritin CFE88_RS01865 IPR009040 Ferritin-like diiron domain CFE88_RS01865 IPR009078 Ferritin-like superfamily CFE88_RS01865 IPR008331 Ferritin/DPS protein domain CFE88_RS01865 IPR041719 Ferritin, prokaryotic-type CFE88_RS01870 IPR013221 Mur ligase, central CFE88_RS01870 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS01870 IPR013564 Domain of unknown function DUF1727 CFE88_RS01875 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01875 IPR011698 CobB/CobQ-like glutamine amidotransferase CFE88_RS01875 IPR017929 CobB/CobQ glutamine amidotransferase CFE88_RS01875 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 CFE88_RS01885 IPR010343 Aromatic acid exporter family member 1 CFE88_RS01890 IPR001714 Peptidase M24, methionine aminopeptidase CFE88_RS01890 IPR036005 Creatinase/aminopeptidase-like CFE88_RS01890 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CFE88_RS01890 IPR000994 Peptidase M24 CFE88_RS01905 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS01905 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS01905 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS01905 IPR017202 Sensor histidine kinase LiaS/VraS CFE88_RS01910 IPR011006 CheY-like superfamily CFE88_RS01910 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS01910 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS01910 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS01915 IPR017039 Virulence factor BrkB CFE88_RS01925 IPR036196 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01925 IPR017867 Protein-tyrosine phosphatase, low molecular weight CFE88_RS01925 IPR023485 Phosphotyrosine protein phosphatase I CFE88_RS01930 IPR009507 Protein of unknown function UPF0435 CFE88_RS01935 IPR035097 Peptidase M29, N-terminal CFE88_RS01935 IPR000787 Peptidase M29 CFE88_RS01940 IPR006683 Thioesterase domain CFE88_RS01940 IPR029069 HotDog domain superfamily CFE88_RS01940 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain CFE88_RS01940 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase CFE88_RS01945 IPR013785 Aldolase-type TIM barrel CFE88_RS01945 IPR007197 Radical SAM CFE88_RS01945 IPR014866 YfkB-like domain CFE88_RS01945 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB CFE88_RS01955 IPR006286 Deglycase PfpI CFE88_RS01955 IPR002818 DJ-1/PfpI CFE88_RS01955 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01960 IPR022978 Monofunctional glycosyl transferase CFE88_RS01960 IPR023346 Lysozyme-like domain superfamily CFE88_RS01960 IPR001264 Glycosyl transferase, family 51 CFE88_RS01960 IPR036950 Penicillin binding protein transglycosylase domain CFE88_RS01965 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS01965 IPR003783 Regulatory protein RecX CFE88_RS01975 IPR018392 LysM domain CFE88_RS01975 IPR036779 LysM domain superfamily CFE88_RS01975 IPR017871 ABC transporter, conserved site CFE88_RS01975 IPR015860 ABC transporter, teichoic acids export, TagH CFE88_RS01975 IPR003439 ABC transporter-like CFE88_RS01975 IPR003593 AAA+ ATPase domain CFE88_RS01975 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01985 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS01990 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CFE88_RS01990 IPR000445 Helix-hairpin-helix motif CFE88_RS01990 IPR011257 DNA glycosylase CFE88_RS01990 IPR005760 A/G-specific adenine glycosylase MutY CFE88_RS01990 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS01990 IPR029119 MutY, C-terminal CFE88_RS01990 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS01990 IPR003265 HhH-GPD domain CFE88_RS01995 IPR035930 FomD-like superfamily CFE88_RS01995 IPR007295 Domain of unknown function DUF402 CFE88_RS01995 IPR016882 Uncharacterised protein family UPF0374 CFE88_RS02000 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS02000 IPR039421 Type I protein exporter CFE88_RS02000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02000 IPR017871 ABC transporter, conserved site CFE88_RS02000 IPR003593 AAA+ ATPase domain CFE88_RS02000 IPR003439 ABC transporter-like CFE88_RS02000 IPR036640 ABC transporter type 1, transmembrane domain superfamily CFE88_RS02005 IPR010343 Aromatic acid exporter family member 1 CFE88_RS02010 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS02010 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02010 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS02010 IPR005814 Aminotransferase class-III CFE88_RS02010 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CFE88_RS02015 IPR013766 Thioredoxin domain CFE88_RS02015 IPR036249 Thioredoxin-like superfamily CFE88_RS02015 IPR024706 Peroxiredoxin, AhpC-type CFE88_RS02015 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CFE88_RS02020 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02020 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS02020 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02020 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS02020 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS02025 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS02025 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02025 IPR002481 Ferric-uptake regulator CFE88_RS02180 IPR009003 Peptidase S1, PA clan CFE88_RS02180 IPR000126 Serine proteases, V8 family, serine active site CFE88_RS02180 IPR008353 Peptidase S1B, exfoliative toxin CFE88_RS02180 IPR008256 Peptidase S1B CFE88_RS02190 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CFE88_RS02190 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS02190 IPR035906 MetI-like superfamily CFE88_RS02195 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02195 IPR003593 AAA+ ATPase domain CFE88_RS02195 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CFE88_RS02195 IPR003439 ABC transporter-like CFE88_RS02195 IPR017871 ABC transporter, conserved site CFE88_RS02200 IPR004453 Epoxyqueuosine reductase QueG CFE88_RS02200 IPR013542 Domain of unknown function DUF1730 CFE88_RS02200 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS02200 IPR016024 Armadillo-type fold CFE88_RS02200 IPR011989 Armadillo-like helical CFE88_RS02200 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS02205 IPR029028 Alpha/beta knot methyltransferases CFE88_RS02205 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase CFE88_RS02205 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS02205 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS02225 IPR024083 Fumarase/histidase, N-terminal CFE88_RS02225 IPR018951 Fumarase C, C-terminal CFE88_RS02225 IPR008948 L-Aspartase-like CFE88_RS02225 IPR020557 Fumarate lyase, conserved site CFE88_RS02225 IPR000362 Fumarate lyase family CFE88_RS02225 IPR005677 Fumarate hydratase, class II CFE88_RS02225 IPR022761 Fumarate lyase, N-terminal CFE88_RS02235 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS02235 IPR006225 Pseudouridine synthase, RluC/RluD CFE88_RS02235 IPR036986 RNA-binding S4 domain superfamily CFE88_RS02235 IPR002942 RNA-binding S4 domain CFE88_RS02235 IPR006145 Pseudouridine synthase, RsuA/RluA CFE88_RS02235 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CFE88_RS02240 IPR029016 GAF-like domain superfamily CFE88_RS02240 IPR003018 GAF domain CFE88_RS02240 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS02240 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS02240 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS02245 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02245 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS02245 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS02245 IPR011006 CheY-like superfamily CFE88_RS02255 IPR016991 Protein of unknown function UCP032178 CFE88_RS02255 IPR007383 Protein of unknown function DUF445 CFE88_RS02260 IPR023378 YheA/YmcA-like domain superfamily CFE88_RS02260 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS02265 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CFE88_RS02265 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02265 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain CFE88_RS02265 IPR014576 Predicted phosphoesterase, YhaO type CFE88_RS02275 IPR003607 HD/PDEase domain CFE88_RS02275 IPR020873 3'-5' exoribonuclease YhaM CFE88_RS02275 IPR006674 HD domain CFE88_RS02285 IPR027304 Trigger factor/SurA domain superfamily CFE88_RS02285 IPR023059 Foldase protein PrsA CFE88_RS02285 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CFE88_RS02300 IPR039384 HINT family CFE88_RS02300 IPR019808 Histidine triad, conserved site CFE88_RS02300 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 IPR011146 HIT-like domain CFE88_RS02300 IPR036265 HIT-like superfamily CFE88_RS02305 IPR003593 AAA+ ATPase domain CFE88_RS02305 IPR003439 ABC transporter-like CFE88_RS02305 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02310 IPR010288 Bacterial ABC transporter EcsB CFE88_RS02320 IPR011008 Dimeric alpha-beta barrel CFE88_RS02320 IPR007138 Antibiotic biosynthesis monooxygenase domain CFE88_RS02325 IPR006361 Uroporphyrinogen decarboxylase HemE CFE88_RS02325 IPR038071 UROD/MetE-like superfamily CFE88_RS02325 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CFE88_RS02330 IPR001015 Ferrochelatase CFE88_RS02330 IPR019772 Ferrochelatase, active site CFE88_RS02330 IPR033644 Ferrochelatase, C-terminal CFE88_RS02330 IPR033659 Ferrochelatase, N-terminal CFE88_RS02335 IPR002937 Amine oxidase CFE88_RS02335 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS02335 IPR004572 Protoporphyrinogen oxidase CFE88_RS02405 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS02405 IPR042099 AMP-dependent synthetase-like superfamily CFE88_RS02405 IPR010192 2-succinylbenzoate--CoA ligase CFE88_RS02405 IPR000873 AMP-dependent synthetase/ligase CFE88_RS02415 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02420 IPR014078 Nucleoside triphosphatase YtkD CFE88_RS02420 IPR000086 NUDIX hydrolase domain CFE88_RS02420 IPR020084 NUDIX hydrolase, conserved site CFE88_RS02420 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS02420 IPR020476 NUDIX hydrolase CFE88_RS02425 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02425 IPR002471 Peptidase S9, serine active site CFE88_RS02425 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain CFE88_RS02430 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal CFE88_RS02430 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal CFE88_RS02430 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site CFE88_RS02430 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising CFE88_RS02435 IPR022628 S-adenosylmethionine synthetase, N-terminal CFE88_RS02435 IPR022630 S-adenosylmethionine synthetase, C-terminal CFE88_RS02435 IPR022631 S-adenosylmethionine synthetase, conserved site CFE88_RS02435 IPR022636 S-adenosylmethionine synthetase superfamily CFE88_RS02435 IPR022629 S-adenosylmethionine synthetase, central domain CFE88_RS02435 IPR002133 S-adenosylmethionine synthetase CFE88_RS02445 IPR018170 Aldo/keto reductase, conserved site CFE88_RS02445 IPR036812 NADP-dependent oxidoreductase domain superfamily CFE88_RS02445 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS02445 IPR020471 Aldo/keto reductase CFE88_RS02450 IPR003691 Putative fluoride ion transporter CrcB CFE88_RS02455 IPR003691 Putative fluoride ion transporter CrcB CFE88_RS02465 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial CFE88_RS02465 IPR018225 Transaldolase, active site CFE88_RS02465 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase CFE88_RS02465 IPR022999 Transaldolase type 3B, putative CFE88_RS02465 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CFE88_RS02465 IPR013785 Aldolase-type TIM barrel CFE88_RS02480 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS02480 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02480 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS02480 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02480 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS02480 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS02495 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS02495 IPR038200 GW domain superfamily CFE88_RS02495 IPR025987 GW domain CFE88_RS02495 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS02495 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CFE88_RS02505 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS02505 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS02505 IPR016193 Cytidine deaminase-like CFE88_RS02505 IPR004794 Riboflavin biosynthesis protein RibD CFE88_RS02505 IPR011549 Riboflavin-specific deaminase, C-terminal CFE88_RS02505 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CFE88_RS02505 IPR024072 Dihydrofolate reductase-like domain superfamily CFE88_RS02510 IPR026017 Lumazine-binding domain CFE88_RS02510 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS02510 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CFE88_RS02510 IPR001783 Lumazine-binding protein CFE88_RS02515 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CFE88_RS02515 IPR032677 GTP cyclohydrolase II CFE88_RS02515 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CFE88_RS02515 IPR000926 GTP cyclohydrolase II, RibA CFE88_RS02515 IPR036144 RibA-like superfamily CFE88_RS02515 IPR016299 Riboflavin biosynthesis protein RibBA CFE88_RS02520 IPR034964 Lumazine synthase CFE88_RS02520 IPR036467 Lumazine/riboflavin synthase superfamily CFE88_RS02520 IPR002180 Lumazine/riboflavin synthase CFE88_RS02525 IPR002872 Proline dehydrogenase domain CFE88_RS02525 IPR008219 Proline dehydrogenase, bacteria and archaea CFE88_RS02525 IPR015659 Proline oxidase family CFE88_RS02525 IPR029041 FAD-linked oxidoreductase-like CFE88_RS02530 IPR022742 Serine aminopeptidase, S33 CFE88_RS02530 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS02530 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02535 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS02535 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02535 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS02535 IPR016998 HTH-type transcriptional regulator Rot CFE88_RS02535 IPR000835 MarR-type HTH domain CFE88_RS02540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02540 IPR010719 Putative rRNA methylase CFE88_RS02545 IPR039661 ELP3/YhcC CFE88_RS02545 IPR006638 Elp3/MiaB/NifB CFE88_RS02545 IPR032432 Radical SAM, C-terminal extension CFE88_RS02545 IPR007197 Radical SAM CFE88_RS02545 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS02545 IPR005911 Protein YhcC-like CFE88_RS02550 IPR020846 Major facilitator superfamily domain CFE88_RS02550 IPR036259 MFS transporter superfamily CFE88_RS02550 IPR011701 Major facilitator superfamily CFE88_RS02555 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02555 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS02555 IPR015413 Methionyl/Leucyl tRNA synthetase CFE88_RS02555 IPR002302 Leucine-tRNA ligase CFE88_RS02555 IPR025709 Leucyl-tRNA synthetase, editing domain CFE88_RS02555 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS02555 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02555 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS02555 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS02570 IPR023166 HI0933-like insert domain superfamily CFE88_RS02570 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS02570 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like CFE88_RS02575 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CFE88_RS02575 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS02575 IPR002797 Polysaccharide biosynthesis protein CFE88_RS02580 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CFE88_RS02580 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CFE88_RS02580 IPR006145 Pseudouridine synthase, RsuA/RluA CFE88_RS02580 IPR036986 RNA-binding S4 domain superfamily CFE88_RS02580 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CFE88_RS02580 IPR002942 RNA-binding S4 domain CFE88_RS02580 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS02590 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS02590 IPR010964 Peptidase M20A, peptidase V-related CFE88_RS02590 IPR002933 Peptidase M20 CFE88_RS02595 IPR001544 Aminotransferase class IV CFE88_RS02595 IPR018300 Aminotransferase, class IV, conserved site CFE88_RS02595 IPR036038 Aminotransferase-like, PLP-dependent enzymes CFE88_RS02595 IPR005784 D-amino acid aminotransferase CFE88_RS02600 IPR002575 Aminoglycoside phosphotransferase CFE88_RS02600 IPR011009 Protein kinase-like domain superfamily CFE88_RS02605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02605 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type CFE88_RS02615 IPR023367 Peptidase M42, domain 2 CFE88_RS02615 IPR008007 Peptidase M42 CFE88_RS02620 IPR036249 Thioredoxin-like superfamily CFE88_RS02620 IPR013766 Thioredoxin domain CFE88_RS02625 IPR010838 Protein of unknown unction DUF1444 CFE88_RS02630 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02630 IPR002547 tRNA-binding domain CFE88_RS02630 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CFE88_RS02630 IPR037154 YtpR-like superfamily CFE88_RS02630 IPR027855 Domain of unknown function DUF4479 CFE88_RS02635 IPR018541 FtsK gamma domain CFE88_RS02635 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02635 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02635 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS02635 IPR002543 FtsK domain CFE88_RS02635 IPR041027 FtsK alpha domain CFE88_RS02635 IPR003593 AAA+ ATPase domain CFE88_RS02640 IPR036615 Mur ligase, C-terminal domain superfamily CFE88_RS02640 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS02640 IPR004101 Mur ligase, C-terminal CFE88_RS02640 IPR013221 Mur ligase, central CFE88_RS02640 IPR005758 UDP-N-acetylmuramate--L-alanine ligase CFE88_RS02640 IPR000713 Mur ligase, N-terminal catalytic domain CFE88_RS02645 IPR009293 Uncharacterised protein family UPF0478 CFE88_RS02655 IPR002701 Chorismate mutase II, prokaryotic-type CFE88_RS02655 IPR006218 DAHP synthetase I/KDSA CFE88_RS02655 IPR036979 Chorismate mutase domain superfamily CFE88_RS02655 IPR010954 Chorismate mutase, Firmicutes/Deinococcus CFE88_RS02655 IPR013785 Aldolase-type TIM barrel CFE88_RS02655 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 CFE88_RS02660 IPR000843 LacI-type HTH domain CFE88_RS02660 IPR028082 Periplasmic binding protein-like I CFE88_RS02660 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CFE88_RS02660 IPR006377 Catabolite control protein A CFE88_RS02665 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site CFE88_RS02665 IPR000559 Formate-tetrahydrofolate ligase, FTHFS CFE88_RS02665 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02670 IPR036950 Penicillin binding protein transglycosylase domain CFE88_RS02670 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS02670 IPR023346 Lysozyme-like domain superfamily CFE88_RS02670 IPR001264 Glycosyl transferase, family 51 CFE88_RS02670 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS02675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02675 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02675 IPR002305 Aminoacyl-tRNA synthetase, class Ic CFE88_RS02675 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 CFE88_RS02675 IPR002942 RNA-binding S4 domain CFE88_RS02675 IPR036986 RNA-binding S4 domain superfamily CFE88_RS02675 IPR002307 Tyrosine-tRNA ligase CFE88_RS02675 IPR024088 Tyrosine-tRNA ligase, bacterial-type CFE88_RS02680 IPR001940 Peptidase S1C CFE88_RS02680 IPR009003 Peptidase S1, PA clan CFE88_RS02680 IPR036034 PDZ superfamily CFE88_RS02680 IPR001478 PDZ domain CFE88_RS02685 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase CFE88_RS02685 IPR002123 Phospholipid/glycerol acyltransferase CFE88_RS02690 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component CFE88_RS02690 IPR013013 Phosphotransferase system, EIIC component, type 1 CFE88_RS02690 IPR036878 Glucose permease domain IIB CFE88_RS02690 IPR003352 Phosphotransferase system, EIIC CFE88_RS02690 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS02690 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS02700 IPR002912 ACT domain CFE88_RS02700 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02700 IPR029009 Allosteric substrate binding domain superfamily CFE88_RS02700 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02700 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS02700 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS02700 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS02700 IPR006236 D-3-phosphoglycerate dehydrogenase CFE88_RS02705 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CFE88_RS02705 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS02705 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS02705 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02705 IPR000192 Aminotransferase class V domain CFE88_RS02705 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CFE88_RS02710 IPR036102 OsmC/Ohr superfamily CFE88_RS02710 IPR003718 OsmC/Ohr family CFE88_RS02710 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes CFE88_RS02710 IPR015946 K homology domain-like, alpha/beta CFE88_RS02715 IPR030395 Glycerophosphodiester phosphodiesterase domain CFE88_RS02715 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CFE88_RS02720 IPR001912 Ribosomal protein S4/S9, N-terminal CFE88_RS02720 IPR005709 Ribosomal protein S4, bacterial-type CFE88_RS02720 IPR018079 Ribosomal protein S4, conserved site CFE88_RS02720 IPR022801 Ribosomal protein S4/S9 CFE88_RS02720 IPR036986 RNA-binding S4 domain superfamily CFE88_RS02720 IPR002942 RNA-binding S4 domain CFE88_RS02730 IPR000614 Free Met sulfoxide reductase conserved site CFE88_RS02730 IPR003018 GAF domain CFE88_RS02730 IPR029016 GAF-like domain superfamily CFE88_RS02735 IPR010379 Septation ring formation regulator EzrA CFE88_RS02740 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS02740 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS02740 IPR000192 Aminotransferase class V domain CFE88_RS02740 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02740 IPR016454 Cysteine desulfurase CFE88_RS02740 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CFE88_RS02740 IPR010240 Cysteine desulfurase IscS CFE88_RS02740 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal CFE88_RS02745 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02745 IPR020536 Thil, AANH domain CFE88_RS02745 IPR004114 THUMP domain CFE88_RS02745 IPR003720 tRNA sulfurtransferase ThiI CFE88_RS02750 IPR002781 Transmembrane protein TauE-like CFE88_RS02755 IPR013740 Redoxin CFE88_RS02755 IPR036249 Thioredoxin-like superfamily CFE88_RS02755 IPR002065 Thiol peroxidase Tpx CFE88_RS02755 IPR013766 Thioredoxin domain CFE88_RS02755 IPR018219 Thiol peroxidase conserved site CFE88_RS02760 IPR003356 DNA methylase, adenine-specific CFE88_RS02760 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted CFE88_RS02760 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02765 IPR004372 Acetate/propionate kinase CFE88_RS02765 IPR023865 Aliphatic acid kinase, short-chain, conserved site CFE88_RS02765 IPR000890 Aliphatic acid kinase, short-chain CFE88_RS02770 IPR006016 UspA CFE88_RS02770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02770 IPR006015 Universal stress protein A family CFE88_RS02775 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CFE88_RS02775 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 CFE88_RS02775 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02775 IPR008141 Alanine dehydrogenase CFE88_RS02775 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CFE88_RS02775 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CFE88_RS02780 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS02780 IPR000994 Peptidase M24 CFE88_RS02780 IPR000587 Creatinase, N-terminal CFE88_RS02780 IPR036005 Creatinase/aminopeptidase-like CFE88_RS02780 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS02785 IPR001279 Metallo-beta-lactamase CFE88_RS02785 IPR022877 Protein of unknown funcion UPF0173 CFE88_RS02785 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS02795 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CFE88_RS02795 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02795 IPR000524 Transcription regulator HTH, GntR CFE88_RS02795 IPR006683 Thioesterase domain CFE88_RS02795 IPR029069 HotDog domain superfamily CFE88_RS02795 IPR010766 DRTGG CFE88_RS02795 IPR000644 CBS domain CFE88_RS02795 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS02800 IPR001667 DDH domain CFE88_RS02800 IPR038763 DHH phosphoesterase superfamily CFE88_RS02800 IPR003156 DHHA1 domain CFE88_RS02805 IPR016195 Polymerase/histidinol phosphatase-like CFE88_RS02805 IPR040982 DNA polymerase III alpha subunit finger domain CFE88_RS02805 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS02805 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CFE88_RS02805 IPR004805 DNA polymerase III, alpha subunit CFE88_RS02805 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain CFE88_RS02805 IPR029460 DNA polymerase, helix-hairpin-helix motif CFE88_RS02805 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS02805 IPR004013 PHP domain CFE88_RS02810 IPR012302 Malic enzyme, NAD-binding CFE88_RS02810 IPR037062 Malic enzyme, N-terminal domain superfamily CFE88_RS02810 IPR012301 Malic enzyme, N-terminal domain CFE88_RS02810 IPR015884 Malic enzyme, conserved site CFE88_RS02810 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02810 IPR001891 Malic oxidoreductase CFE88_RS02815 IPR041010 Acetyl-coA carboxylase zinc finger domain CFE88_RS02815 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CFE88_RS02815 IPR034733 Acetyl-CoA carboxylase CFE88_RS02815 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CFE88_RS02815 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS02820 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CFE88_RS02820 IPR001095 Acetyl-CoA carboxylase, alpha subunit CFE88_RS02820 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS02825 IPR022953 ATP-dependent 6-phosphofructokinase CFE88_RS02825 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type CFE88_RS02825 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic CFE88_RS02825 IPR015912 Phosphofructokinase, conserved site CFE88_RS02825 IPR000023 Phosphofructokinase domain CFE88_RS02825 IPR035966 Phosphofructokinase superfamily CFE88_RS02830 IPR001697 Pyruvate kinase CFE88_RS02830 IPR036637 Phosphohistidine domain superfamily CFE88_RS02830 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS02830 IPR011037 Pyruvate kinase-like, insert domain superfamily CFE88_RS02830 IPR015793 Pyruvate kinase, barrel CFE88_RS02830 IPR015795 Pyruvate kinase, C-terminal CFE88_RS02830 IPR015806 Pyruvate kinase, insert domain superfamily CFE88_RS02830 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CFE88_RS02830 IPR036918 Pyruvate kinase, C-terminal domain superfamily CFE88_RS02830 IPR040442 Pyruvate kinase-like domain superfamily CFE88_RS02835 IPR004840 Amino acid permease, conserved site CFE88_RS02835 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS02840 IPR011278 2-methylcitrate synthase/citrate synthase type I CFE88_RS02840 IPR016142 Citrate synthase-like, large alpha subdomain CFE88_RS02840 IPR036969 Citrate synthase superfamily CFE88_RS02840 IPR024176 Citrate synthase, bacterial-type CFE88_RS02840 IPR016143 Citrate synthase-like, small alpha subdomain CFE88_RS02840 IPR019810 Citrate synthase active site CFE88_RS02840 IPR002020 Citrate synthase CFE88_RS02845 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic CFE88_RS02845 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CFE88_RS02845 IPR024084 Isopropylmalate dehydrogenase-like domain CFE88_RS02850 IPR011006 CheY-like superfamily CFE88_RS02850 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS02850 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02850 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS02850 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS02850 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS02855 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS02855 IPR013767 PAS fold CFE88_RS02855 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS02855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS02855 IPR031967 PhoR, single Cache-like domain CFE88_RS02855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS02855 IPR005467 Histidine kinase domain CFE88_RS02855 IPR035965 PAS domain superfamily CFE88_RS02855 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS02855 IPR000014 PAS domain CFE88_RS02860 IPR002298 DNA polymerase A CFE88_RS02860 IPR036397 Ribonuclease H superfamily CFE88_RS02860 IPR012337 Ribonuclease H-like superfamily CFE88_RS02860 IPR029060 PIN-like domain superfamily CFE88_RS02860 IPR008918 Helix-hairpin-helix motif, class 2 CFE88_RS02860 IPR020045 DNA polymerase I-like, H3TH domain CFE88_RS02860 IPR018320 DNA polymerase 1 CFE88_RS02860 IPR001098 DNA-directed DNA polymerase, family A, palm domain CFE88_RS02860 IPR019760 DNA-directed DNA polymerase, family A, conserved site CFE88_RS02860 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CFE88_RS02860 IPR002421 5'-3' exonuclease, N-terminal CFE88_RS02860 IPR002562 3'-5' exonuclease domain CFE88_RS02860 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CFE88_RS02865 IPR035937 MutM-like, N-terminal CFE88_RS02865 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CFE88_RS02865 IPR010663 Zinc finger, FPG/IleRS-type CFE88_RS02865 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CFE88_RS02865 IPR020629 Formamidopyrimidine-DNA glycosylase CFE88_RS02865 IPR010979 Ribosomal protein S13-like, H2TH CFE88_RS02865 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CFE88_RS02870 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02870 IPR001977 Dephospho-CoA kinase CFE88_RS02880 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CFE88_RS02880 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CFE88_RS02880 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CFE88_RS02880 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CFE88_RS02880 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02880 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CFE88_RS02885 IPR005144 ATP-cone domain CFE88_RS02885 IPR003796 Ribonucleotide reductase regulator NrdR-like CFE88_RS02890 IPR006343 DnaD domain CFE88_RS02895 IPR002611 IstB-like ATP-binding protein CFE88_RS02895 IPR003593 AAA+ ATPase domain CFE88_RS02895 IPR009928 Primosomal DnaI, N-terminal CFE88_RS02895 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02900 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS02900 IPR033728 Threonine-tRNA ligase catalytic core domain CFE88_RS02900 IPR004154 Anticodon-binding CFE88_RS02900 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CFE88_RS02900 IPR002320 Threonine-tRNA ligase, class IIa CFE88_RS02900 IPR036621 Anticodon-binding domain superfamily CFE88_RS02900 IPR012675 Beta-grasp domain superfamily CFE88_RS02900 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CFE88_RS02900 IPR004095 TGS CFE88_RS02900 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CFE88_RS02900 IPR012676 TGS-like CFE88_RS02905 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS02910 IPR019813 Translation initiation factor 3, conserved site CFE88_RS02910 IPR019815 Translation initiation factor 3, C-terminal CFE88_RS02910 IPR019814 Translation initiation factor 3, N-terminal CFE88_RS02910 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CFE88_RS02910 IPR001288 Translation initiation factor 3 CFE88_RS02910 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CFE88_RS02915 IPR021137 Ribosomal protein L35 CFE88_RS02915 IPR037229 Ribosomal protein L35 superfamily CFE88_RS02915 IPR001706 Ribosomal protein L35, non-mitochondrial CFE88_RS02915 IPR018265 Ribosomal protein L35, conserved site CFE88_RS02920 IPR035566 Ribosomal protein L20, C-terminal CFE88_RS02920 IPR005813 Ribosomal protein L20 CFE88_RS02925 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS02935 IPR008881 Trigger factor, ribosome-binding, bacterial CFE88_RS02935 IPR037041 Trigger factor, C-terminal domain superfamily CFE88_RS02935 IPR005215 Trigger factor CFE88_RS02935 IPR027304 Trigger factor/SurA domain superfamily CFE88_RS02935 IPR036611 Trigger factor ribosome-binding domain superfamily CFE88_RS02935 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CFE88_RS02935 IPR008880 Trigger factor, C-terminal CFE88_RS02940 IPR003959 ATPase, AAA-type, core CFE88_RS02940 IPR004487 Clp protease, ATP-binding subunit ClpX CFE88_RS02940 IPR003593 AAA+ ATPase domain CFE88_RS02940 IPR038366 Zinc finger, ClpX C4-type superfamily CFE88_RS02940 IPR010603 Zinc finger, ClpX C4-type CFE88_RS02940 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02940 IPR019489 Clp ATPase, C-terminal CFE88_RS02945 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CFE88_RS02945 IPR030393 EngB-type guanine nucleotide-binding (G) domain CFE88_RS02945 IPR005225 Small GTP-binding protein domain CFE88_RS02945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02945 IPR006073 GTP binding domain CFE88_RS02950 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CFE88_RS02950 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CFE88_RS02950 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CFE88_RS02950 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS02950 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CFE88_RS02950 IPR018214 Glutamyl-tRNA reductase, conserved site CFE88_RS02950 IPR036291 NAD(P)-binding domain superfamily CFE88_RS02950 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CFE88_RS02960 IPR022418 Porphobilinogen deaminase, C-terminal CFE88_RS02960 IPR022417 Porphobilinogen deaminase, N-terminal CFE88_RS02960 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site CFE88_RS02960 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily CFE88_RS02960 IPR000860 Porphobilinogen deaminase CFE88_RS02965 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CFE88_RS02965 IPR006366 Uroporphyrin-III C-methyltransferase CFE88_RS02965 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS02965 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS02965 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase CFE88_RS02965 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily CFE88_RS02965 IPR000878 Tetrapyrrole methylase CFE88_RS02965 IPR035996 Tetrapyrrole methylase superfamily CFE88_RS02970 IPR001731 Delta-aminolevulinic acid dehydratase CFE88_RS02970 IPR013785 Aldolase-type TIM barrel CFE88_RS02970 IPR030656 Delta-aminolevulinic acid dehydratase, active site CFE88_RS02975 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS02975 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02975 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CFE88_RS02975 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS02975 IPR005814 Aminotransferase class-III CFE88_RS02985 IPR011257 DNA glycosylase CFE88_RS02985 IPR005019 Methyladenine glycosylase CFE88_RS02985 IPR004597 DNA-3-methyladenine glycosylase I CFE88_RS02990 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS02990 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02990 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS02990 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CFE88_RS02990 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS02990 IPR033705 Valyl tRNA synthetase, anticodon-binding domain CFE88_RS02990 IPR002303 Valine-tRNA ligase CFE88_RS02990 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CFE88_RS02990 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CFE88_RS02990 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS02990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02995 IPR036615 Mur ligase, C-terminal domain superfamily CFE88_RS02995 IPR001645 Folylpolyglutamate synthetase CFE88_RS02995 IPR018109 Folylpolyglutamate synthetase, conserved site CFE88_RS02995 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS02995 IPR004101 Mur ligase, C-terminal CFE88_RS02995 IPR013221 Mur ligase, central CFE88_RS03005 IPR037518 MPN domain CFE88_RS03005 IPR001405 Uncharacterised protein family UPF0758 CFE88_RS03005 IPR010994 RuvA domain 2-like CFE88_RS03005 IPR020891 Uncharacterised protein family UPF0758, conserved site CFE88_RS03005 IPR025657 RadC-like JAB domain CFE88_RS03025 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 CFE88_RS03025 IPR007221 Rod shape-determining protein MreC CFE88_RS03025 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 CFE88_RS03035 IPR036164 L21-like superfamily CFE88_RS03035 IPR028909 Ribosomal protein L21-like CFE88_RS03035 IPR001787 Ribosomal protein L21 CFE88_RS03040 IPR007422 Cysteine protease Prp CFE88_RS03040 IPR036764 Cysteine protease Prp superfamily CFE88_RS03045 IPR001684 Ribosomal protein L27 CFE88_RS03045 IPR018261 Ribosomal protein L27, conserved site CFE88_RS03050 IPR006073 GTP binding domain CFE88_RS03050 IPR031167 OBG-type guanine nucleotide-binding (G) domain CFE88_RS03050 IPR014100 GTP-binding protein Obg/CgtA CFE88_RS03050 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily CFE88_RS03050 IPR006074 GTP1/OBG, conserved site CFE88_RS03050 IPR036726 GTP1/OBG domain superfamily CFE88_RS03050 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03050 IPR006169 GTP1/OBG domain CFE88_RS03050 IPR015349 GTP-binding protein OBG, C-terminal CFE88_RS03055 IPR002912 ACT domain CFE88_RS03055 IPR008310 UPF0735 ACT domain-containing protein CFE88_RS03060 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CFE88_RS03060 IPR036267 RuvA, C-terminal domain superfamily CFE88_RS03060 IPR000085 Bacterial DNA recombination protein RuvA CFE88_RS03060 IPR011114 Holliday junction DNA helicase RuvA, C-terminal CFE88_RS03060 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03060 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS03060 IPR010994 RuvA domain 2-like CFE88_RS03065 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03065 IPR008823 RuvB C-terminal winged helix domain CFE88_RS03065 IPR008824 RuvB-like P-loop domain CFE88_RS03065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03065 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03065 IPR004605 DNA helicase, Holliday junction RuvB-type CFE88_RS03065 IPR041445 RuvB, AAA lid domain CFE88_RS03065 IPR003593 AAA+ ATPase domain CFE88_RS03070 IPR042118 QueA, domain 1 CFE88_RS03070 IPR042119 QueA, domain 2 CFE88_RS03070 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily CFE88_RS03070 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA CFE88_RS03075 IPR036511 Queuine tRNA-ribosyltransferase-like CFE88_RS03075 IPR004803 tRNA-guanine transglycosylase CFE88_RS03075 IPR002616 tRNA-guanine(15) transglycosylase-like CFE88_RS03080 IPR003849 Preprotein translocase YajC CFE88_RS03085 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CFE88_RS03085 IPR005791 Protein translocase subunit SecD CFE88_RS03085 IPR005665 Protein-export membrane protein SecF, bacterial CFE88_RS03085 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CFE88_RS03090 IPR003156 DHHA1 domain CFE88_RS03090 IPR038763 DHH phosphoesterase superfamily CFE88_RS03090 IPR001667 DDH domain CFE88_RS03090 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal CFE88_RS03090 IPR041122 RecJ, OB domain CFE88_RS03090 IPR004610 Bacterial RecJ exonuclease CFE88_RS03095 IPR000836 Phosphoribosyltransferase domain CFE88_RS03095 IPR005764 Adenine phosphoribosyl transferase CFE88_RS03095 IPR029057 Phosphoribosyltransferase-like CFE88_RS03100 IPR033655 RelA, TGS domain CFE88_RS03100 IPR012676 TGS-like CFE88_RS03100 IPR004095 TGS CFE88_RS03100 IPR007685 RelA/SpoT CFE88_RS03100 IPR004811 RelA/SpoT family CFE88_RS03100 IPR012675 Beta-grasp domain superfamily CFE88_RS03100 IPR003607 HD/PDEase domain CFE88_RS03100 IPR002912 ACT domain CFE88_RS03105 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CFE88_RS03105 IPR003732 D-aminoacyl-tRNA deacylase DTD CFE88_RS03110 IPR003646 SH3-like domain, bacterial-type CFE88_RS03110 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CFE88_RS03110 IPR017273 Probable cell wall amidase LytH CFE88_RS03115 IPR036621 Anticodon-binding domain superfamily CFE88_RS03115 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CFE88_RS03115 IPR033656 Histidyl-anticodon-binding CFE88_RS03115 IPR015807 Histidine-tRNA ligase CFE88_RS03115 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS03115 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CFE88_RS03115 IPR004154 Anticodon-binding CFE88_RS03120 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03120 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS03120 IPR029351 GAD domain CFE88_RS03120 IPR004115 GAD-like domain superfamily CFE88_RS03120 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CFE88_RS03120 IPR004524 Aspartate-tRNA ligase, type 1 CFE88_RS03120 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS03120 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS03135 IPR035985 Ubiquitin-activating enzyme CFE88_RS03135 IPR000594 THIF-type NAD/FAD binding fold CFE88_RS03140 IPR008824 RuvB-like P-loop domain CFE88_RS03140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03140 IPR021886 MgsA AAA+ ATPase C-terminal CFE88_RS03140 IPR032423 AAA C-terminal domain CFE88_RS03140 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS03140 IPR003593 AAA+ ATPase domain CFE88_RS03145 IPR000944 Transcription regulator Rrf2-type CFE88_RS03145 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03145 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03145 IPR030489 Transcription regulator Rrf2-type, conserved site CFE88_RS03155 IPR036661 Luciferase-like domain superfamily CFE88_RS03155 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS03155 IPR011251 Luciferase-like domain CFE88_RS03160 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CFE88_RS03160 IPR016454 Cysteine desulfurase CFE88_RS03160 IPR000192 Aminotransferase class V domain CFE88_RS03160 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS03160 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS03160 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03165 IPR004506 tRNA-specific 2-thiouridylase CFE88_RS03165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03165 IPR023382 Adenine nucleotide alpha hydrolase-like domains CFE88_RS03175 IPR029493 RecD helicase-like helix-hairpin-helix domain CFE88_RS03175 IPR003593 AAA+ ATPase domain CFE88_RS03175 IPR006345 RecD-like DNA helicase CFE88_RS03175 IPR041451 RecD-like DNA helicase, SH3 domain CFE88_RS03175 IPR027785 UvrD-like helicase C-terminal domain CFE88_RS03175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03180 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS03180 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CFE88_RS03180 IPR003156 DHHA1 domain CFE88_RS03180 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CFE88_RS03180 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CFE88_RS03180 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain CFE88_RS03180 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily CFE88_RS03180 IPR002318 Alanine-tRNA ligase, class IIc CFE88_RS03180 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CFE88_RS03185 IPR009309 IreB regulatory phosphoprotein CFE88_RS03190 IPR012337 Ribonuclease H-like superfamily CFE88_RS03190 IPR005227 Putative pre-16S rRNA nuclease CFE88_RS03190 IPR006641 YqgF/RNase H-like domain CFE88_RS03190 IPR037027 YqgF/RNase H-like domain superfamily CFE88_RS03195 IPR009711 Uncharacterised protein family UPF0473 CFE88_RS03205 IPR001539 Peptidase U32 CFE88_RS03210 IPR032525 Peptidase family U32, C-terminal CFE88_RS03210 IPR001539 Peptidase U32 CFE88_RS03215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03215 IPR026008 Uridine kinase CFE88_RS03215 IPR000764 Uridine kinase-like CFE88_RS03215 IPR006083 Phosphoribulokinase/uridine kinase CFE88_RS03220 IPR006359 Transcription elongation factor GreA CFE88_RS03220 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CFE88_RS03220 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CFE88_RS03220 IPR028624 Transcription elongation factor GreA/GreB CFE88_RS03220 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CFE88_RS03220 IPR023459 Transcription elongation factor GreA/GreB family CFE88_RS03220 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CFE88_RS03220 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CFE88_RS03225 IPR010016 KipI family CFE88_RS03225 IPR029000 Cyclophilin-like domain superfamily CFE88_RS03225 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS03230 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS03230 IPR029000 Cyclophilin-like domain superfamily CFE88_RS03235 IPR001249 Acetyl-CoA biotin carboxyl carrier CFE88_RS03235 IPR000089 Biotin/lipoyl attachment CFE88_RS03235 IPR001882 Biotin-binding site CFE88_RS03235 IPR011053 Single hybrid motif CFE88_RS03240 IPR011054 Rudiment single hybrid motif CFE88_RS03240 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CFE88_RS03240 IPR011761 ATP-grasp fold CFE88_RS03240 IPR005481 Biotin carboxylase-like, N-terminal domain CFE88_RS03240 IPR011764 Biotin carboxylation domain CFE88_RS03240 IPR005482 Biotin carboxylase, C-terminal CFE88_RS03240 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS03240 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS03245 IPR005501 LamB/YcsF/PxpA-like CFE88_RS03245 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CFE88_RS03250 IPR001046 NRAMP family CFE88_RS03255 IPR010049 MTA/SAH nucleosidase CFE88_RS03255 IPR035994 Nucleoside phosphorylase superfamily CFE88_RS03255 IPR000845 Nucleoside phosphorylase domain CFE88_RS03260 IPR006439 HAD hydrolase, subfamily IA CFE88_RS03260 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CFE88_RS03260 IPR036412 HAD-like superfamily CFE88_RS03260 IPR023214 HAD superfamily CFE88_RS03260 IPR010021 HAD-superfamily phosphatase, YqeG-like CFE88_RS03265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03265 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CFE88_RS03265 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH CFE88_RS03265 IPR006073 GTP binding domain CFE88_RS03270 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CFE88_RS03270 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03270 IPR041121 SDH, C-terminal CFE88_RS03270 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS03270 IPR011342 Shikimate dehydrogenase CFE88_RS03270 IPR022893 Shikimate dehydrogenase family CFE88_RS03275 IPR035920 YhbY-like superfamily CFE88_RS03275 IPR001890 RNA-binding, CRM domain CFE88_RS03275 IPR017924 RNA-binding protein YhbY CFE88_RS03280 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03280 IPR004821 Cytidyltransferase-like domain CFE88_RS03280 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CFE88_RS03285 IPR006674 HD domain CFE88_RS03285 IPR003607 HD/PDEase domain CFE88_RS03285 IPR005249 Conserved hypothetical protein CHP00488 CFE88_RS03290 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CFE88_RS03295 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03295 IPR041698 Methyltransferase domain 25 CFE88_RS03305 IPR035105 Deoxycytidylate deaminase domain CFE88_RS03305 IPR013404 Competence operon E, ComEB CFE88_RS03305 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS03305 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS03305 IPR016193 Cytidine deaminase-like CFE88_RS03305 IPR015517 Deoxycytidylate deaminase-related CFE88_RS03310 IPR004477 ComEC/Rec2-related protein CFE88_RS03310 IPR035681 ComA-like, MBL domain CFE88_RS03310 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS03310 IPR001279 Metallo-beta-lactamase CFE88_RS03310 IPR025405 Domain of unknown function DUF4131 CFE88_RS03310 IPR004797 Competence protein ComEC/Rec2 CFE88_RS03315 IPR005790 DNA polymerase III, delta subunit CFE88_RS03315 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS03315 IPR010372 DNA polymerase III delta, N-terminal CFE88_RS03315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03325 IPR002583 Ribosomal protein S20 CFE88_RS03325 IPR036510 Ribosomal protein S20 superfamily CFE88_RS03330 IPR006297 Elongation factor 4 CFE88_RS03330 IPR041095 Elongation Factor G, domain II CFE88_RS03330 IPR035647 EF-G domain III/V-like CFE88_RS03330 IPR000640 Elongation factor EFG, domain V-like CFE88_RS03330 IPR004161 Translation elongation factor EFTu-like, domain 2 CFE88_RS03330 IPR031157 Tr-type G domain, conserved site CFE88_RS03330 IPR038363 LepA, C-terminal domain superfamily CFE88_RS03330 IPR000795 Transcription factor, GTP-binding domain CFE88_RS03330 IPR005225 Small GTP-binding protein domain CFE88_RS03330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03330 IPR035654 Elongation factor 4, domain IV CFE88_RS03330 IPR013842 GTP-binding protein LepA, C-terminal CFE88_RS03335 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS03335 IPR006638 Elp3/MiaB/NifB CFE88_RS03335 IPR010723 HemN, C-terminal CFE88_RS03335 IPR004559 Heme chaperone HemW-like CFE88_RS03335 IPR007197 Radical SAM CFE88_RS03335 IPR034505 Anaerobic coproporphyrinogen-III oxidase CFE88_RS03340 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily CFE88_RS03340 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03340 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal CFE88_RS03340 IPR002571 Heat-inducible transcription repressor HrcA CFE88_RS03340 IPR029016 GAF-like domain superfamily CFE88_RS03340 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03345 IPR009012 GrpE nucleotide exchange factor, head CFE88_RS03345 IPR013805 GrpE nucleotide exchange factor, coiled-coil CFE88_RS03345 IPR000740 GrpE nucleotide exchange factor CFE88_RS03350 IPR013126 Heat shock protein 70 family CFE88_RS03350 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CFE88_RS03350 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CFE88_RS03350 IPR018181 Heat shock protein 70, conserved site CFE88_RS03350 IPR012725 Chaperone DnaK CFE88_RS03355 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CFE88_RS03355 IPR012724 Chaperone DnaJ CFE88_RS03355 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CFE88_RS03355 IPR036869 Chaperone J-domain superfamily CFE88_RS03355 IPR001623 DnaJ domain CFE88_RS03355 IPR018253 DnaJ domain, conserved site CFE88_RS03355 IPR008971 HSP40/DnaJ peptide-binding CFE88_RS03355 IPR002939 Chaperone DnaJ, C-terminal CFE88_RS03360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03360 IPR004498 Ribosomal protein L11 methyltransferase CFE88_RS03365 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS03365 IPR015947 PUA-like superfamily CFE88_RS03365 IPR006700 Ribosomal RNA small subunit methyltransferase E CFE88_RS03365 IPR029028 Alpha/beta knot methyltransferases CFE88_RS03370 IPR020612 Methylthiotransferase, conserved site CFE88_RS03370 IPR005839 Methylthiotransferase CFE88_RS03370 IPR006467 MiaB-like tRNA modifying enzyme CFE88_RS03370 IPR007197 Radical SAM CFE88_RS03370 IPR002792 TRAM domain CFE88_RS03370 IPR034557 Threonylcarbamoyladenosine tRNA methylthiotransferase CFE88_RS03370 IPR038135 Methylthiotransferase, N-terminal domain superfamily CFE88_RS03370 IPR013848 Methylthiotransferase, N-terminal CFE88_RS03370 IPR006638 Elp3/MiaB/NifB CFE88_RS03370 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS03375 IPR038380 Ribosomal protein S21 superfamily CFE88_RS03375 IPR001911 Ribosomal protein S21 CFE88_RS03375 IPR018278 Ribosomal protein S21, conserved site CFE88_RS03380 IPR002825 Peptidase S49, serine-peptidase prokaryotes CFE88_RS03380 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS03380 IPR002810 NfeD-like, C-terminal domain CFE88_RS03385 IPR022853 Uncharacterised protein family YdfA-immunity CFE88_RS03395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03395 IPR003714 PhoH-like protein CFE88_RS03400 IPR002036 Endoribonuclease YbeY CFE88_RS03400 IPR023091 Metalloprotease catalytic domain superfamily, predicted CFE88_RS03400 IPR020549 Endoribonuclease YbeY, conserved site CFE88_RS03405 IPR033718 Diacylglycerol kinase, prokaryotic CFE88_RS03405 IPR000829 DAGK family CFE88_RS03405 IPR036945 Diacylglycerol kinase (DAGK) superfamily CFE88_RS03410 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS03410 IPR016193 Cytidine deaminase-like CFE88_RS03410 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS03410 IPR006262 Cytidine deaminase, homotetrameric CFE88_RS03415 IPR006073 GTP binding domain CFE88_RS03415 IPR004044 K Homology domain, type 2 CFE88_RS03415 IPR015946 K homology domain-like, alpha/beta CFE88_RS03415 IPR005225 Small GTP-binding protein domain CFE88_RS03415 IPR005662 GTP-binding protein Era CFE88_RS03415 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03415 IPR009019 K homology domain superfamily, prokaryotic type CFE88_RS03415 IPR030388 Era-type guanine nucleotide-binding (G) domain CFE88_RS03420 IPR022572 DNA replication/recombination mediator RecO, N-terminal CFE88_RS03420 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03420 IPR003717 Recombination protein O, RecO CFE88_RS03420 IPR037278 ARFGAP/RecO-like zinc finger CFE88_RS03425 IPR002315 Glycyl-tRNA synthetase CFE88_RS03425 IPR033731 Glycyl-tRNA synthetase-like core domain CFE88_RS03425 IPR022961 Glycine-tRNA ligase, bacterial CFE88_RS03425 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CFE88_RS03425 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 CFE88_RS03425 IPR036621 Anticodon-binding domain superfamily CFE88_RS03425 IPR004154 Anticodon-binding CFE88_RS03425 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS03430 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03430 IPR013196 Helix-turn-helix, type 11 CFE88_RS03430 IPR000644 CBS domain CFE88_RS03430 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03430 IPR016842 Protein of unknown function UCP026546, HtH-CBS CFE88_RS03435 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS03435 IPR005177 Bifunctional kinase-pyrophosphorylase CFE88_RS03440 IPR007693 DNA helicase, DnaB-like, N-terminal CFE88_RS03440 IPR013264 DNA primase, catalytic core, N-terminal CFE88_RS03440 IPR036977 DNA Primase, CHC2-type zinc finger CFE88_RS03440 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS03440 IPR030846 DNA primase DnaG, bacteria CFE88_RS03440 IPR006295 DNA primase, DnaG CFE88_RS03440 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CFE88_RS03440 IPR002694 Zinc finger, CHC2-type CFE88_RS03440 IPR034151 Bacterial DnaG primase, TOPRIM domain CFE88_RS03440 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CFE88_RS03440 IPR006171 TOPRIM domain CFE88_RS03445 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS03445 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS03445 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS03445 IPR000943 RNA polymerase sigma-70 CFE88_RS03445 IPR042189 Sigma-70 factor, region 1.1 superfamily CFE88_RS03445 IPR007127 RNA polymerase sigma factor 70, region 1.1 CFE88_RS03445 IPR007630 RNA polymerase sigma-70 region 4 CFE88_RS03445 IPR009042 RNA polymerase sigma-70 region 1.2 CFE88_RS03445 IPR013324 RNA polymerase sigma factor, region 3/4-like CFE88_RS03445 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CFE88_RS03445 IPR007624 RNA polymerase sigma-70 region 3 CFE88_RS03445 IPR028630 RNA polymerase sigma factor RpoD CFE88_RS03445 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03450 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03450 IPR006901 tRNA methyltransferase TrmK CFE88_RS03455 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS03455 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria CFE88_RS03455 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CFE88_RS03455 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CFE88_RS03460 IPR014014 RNA helicase, DEAD-box type, Q motif CFE88_RS03460 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03460 IPR001650 Helicase, C-terminal CFE88_RS03460 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS03460 IPR011545 DEAD/DEAH box helicase domain CFE88_RS03460 IPR030881 DEAD-box ATP-dependent RNA helicase CshB CFE88_RS03465 IPR036237 Xylose isomerase-like superfamily CFE88_RS03465 IPR013022 Xylose isomerase-like, TIM barrel domain CFE88_RS03465 IPR018246 AP endonuclease 2, zinc binding site CFE88_RS03465 IPR001719 AP endonuclease 2 CFE88_RS03470 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03470 IPR017871 ABC transporter, conserved site CFE88_RS03470 IPR003439 ABC transporter-like CFE88_RS03470 IPR003593 AAA+ ATPase domain CFE88_RS03475 IPR037294 ABC transporter, BtuC-like CFE88_RS03475 IPR001626 ABC transporter, TroCD-like CFE88_RS03480 IPR002481 Ferric-uptake regulator CFE88_RS03480 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03480 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03485 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CFE88_RS03485 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CFE88_RS03485 IPR001189 Manganese/iron superoxide dismutase CFE88_RS03485 IPR019833 Manganese/iron superoxide dismutase, binding site CFE88_RS03485 IPR019832 Manganese/iron superoxide dismutase, C-terminal CFE88_RS03485 IPR019831 Manganese/iron superoxide dismutase, N-terminal CFE88_RS03495 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03495 IPR005311 Penicillin-binding protein, dimerisation domain CFE88_RS03495 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CFE88_RS03495 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS03500 IPR011332 Zinc-binding ribosomal protein CFE88_RS03500 IPR038584 Ribosomal protein L33 superfamily CFE88_RS03500 IPR018264 Ribosomal protein L33, conserved site CFE88_RS03500 IPR001705 Ribosomal protein L33 CFE88_RS03505 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CFE88_RS03505 IPR002698 5-formyltetrahydrofolate cyclo-ligase CFE88_RS03505 IPR037171 NagB/RpiA transferase-like CFE88_RS03510 IPR011990 Tetratricopeptide-like helical domain superfamily CFE88_RS03510 IPR013026 Tetratricopeptide repeat-containing domain CFE88_RS03510 IPR022764 Peptidase S54, rhomboid domain CFE88_RS03510 IPR035952 Rhomboid-like superfamily CFE88_RS03510 IPR019734 Tetratricopeptide repeat CFE88_RS03515 IPR023164 YqgQ-like superfamily CFE88_RS03515 IPR009256 Protein of unknown function DUF910 CFE88_RS03520 IPR000600 ROK family CFE88_RS03520 IPR004654 Glucokinase ROK CFE88_RS03525 IPR029756 MTH1187/YkoF-like CFE88_RS03525 IPR002767 Thiamine-binding protein CFE88_RS03530 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS03530 IPR001279 Metallo-beta-lactamase CFE88_RS03535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03535 IPR001482 Type II/IV secretion system protein CFE88_RS03535 IPR003593 AAA+ ATPase domain CFE88_RS03540 IPR001992 Type II secretion system conserved site CFE88_RS03540 IPR003004 GspF/PilC family CFE88_RS03540 IPR042094 Type II secretion system F domain superfamily CFE88_RS03540 IPR018076 Type II secretion system F domain CFE88_RS03545 IPR016940 ComG operon protein C CFE88_RS03545 IPR012902 Prokaryotic N-terminal methylation site CFE88_RS03545 IPR000983 Bacterial general secretion pathway protein G-type pilin CFE88_RS03570 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03570 IPR031322 Shikimate kinase/gluconokinase CFE88_RS03570 IPR023000 Shikimate kinase, conserved site CFE88_RS03570 IPR000623 Shikimate kinase/Threonine synthase-like 1 CFE88_RS03575 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CFE88_RS03575 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CFE88_RS03575 IPR006222 Aminomethyltransferase, folate-binding domain CFE88_RS03575 IPR006223 Glycine cleavage system T protein CFE88_RS03575 IPR022903 Glycine cleavage system T protein, bacteria CFE88_RS03575 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain CFE88_RS03575 IPR028896 Aminomethyltransferase-like CFE88_RS03580 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS03580 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03580 IPR020581 Glycine cleavage system P protein CFE88_RS03580 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 CFE88_RS03580 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS03585 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS03585 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS03585 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03585 IPR020581 Glycine cleavage system P protein CFE88_RS03585 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 CFE88_RS03595 IPR001763 Rhodanese-like domain CFE88_RS03595 IPR036873 Rhodanese-like domain superfamily CFE88_RS03600 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CFE88_RS03600 IPR024898 Octanoyltransferase LipM CFE88_RS03615 IPR000587 Creatinase, N-terminal CFE88_RS03615 IPR000994 Peptidase M24 CFE88_RS03615 IPR001714 Peptidase M24, methionine aminopeptidase CFE88_RS03615 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS03615 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS03615 IPR036005 Creatinase/aminopeptidase-like CFE88_RS03620 IPR014722 Ribosomal protein L2, domain 2 CFE88_RS03620 IPR020599 Translation elongation factor P/YeiP CFE88_RS03620 IPR013185 Translation elongation factor, KOW-like CFE88_RS03620 IPR001059 Translation elongation factor P/YeiP, central CFE88_RS03620 IPR013852 Translation elongation factor P/YeiP, conserved site CFE88_RS03620 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03620 IPR015365 Elongation factor P, C-terminal CFE88_RS03620 IPR011768 Translation elongation factor P CFE88_RS03620 IPR008991 Translation protein SH3-like domain superfamily CFE88_RS03625 IPR000534 Semialdehyde dehydrogenase, NAD-binding CFE88_RS03625 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site CFE88_RS03625 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS03625 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 CFE88_RS03625 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03630 IPR042195 ArgJ beta chain, C-terminal domain CFE88_RS03630 IPR002813 Arginine biosynthesis protein ArgJ CFE88_RS03630 IPR016117 ArgJ-like domain superfamily CFE88_RS03635 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS03635 IPR037528 Acetylglutamate kinase ArgB CFE88_RS03635 IPR004662 Acetylglutamate kinase family CFE88_RS03635 IPR036393 Acetylglutamate kinase-like superfamily CFE88_RS03640 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS03640 IPR005814 Aminotransferase class-III CFE88_RS03640 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03640 IPR004636 Acetylornithine/Succinylornithine transaminase family CFE88_RS03640 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS03645 IPR000089 Biotin/lipoyl attachment CFE88_RS03645 IPR011053 Single hybrid motif CFE88_RS03645 IPR001249 Acetyl-CoA biotin carboxyl carrier CFE88_RS03645 IPR001882 Biotin-binding site CFE88_RS03650 IPR011761 ATP-grasp fold CFE88_RS03650 IPR005481 Biotin carboxylase-like, N-terminal domain CFE88_RS03650 IPR011764 Biotin carboxylation domain CFE88_RS03650 IPR005482 Biotin carboxylase, C-terminal CFE88_RS03650 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS03650 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS03650 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CFE88_RS03650 IPR011054 Rudiment single hybrid motif CFE88_RS03655 IPR005531 Alkaline shock protein Asp23 CFE88_RS03660 IPR006027 NusB/RsmB/TIM44 CFE88_RS03660 IPR035926 NusB-like superfamily CFE88_RS03660 IPR011605 NusB antitermination factor CFE88_RS03665 IPR020579 Exonuclease VII, large subunit, C-terminal CFE88_RS03665 IPR003753 Exonuclease VII, large subunit CFE88_RS03665 IPR025824 OB-fold nucleic acid binding domain CFE88_RS03670 IPR003761 Exonuclease VII, small subunit CFE88_RS03670 IPR037004 Exonuclease VII, small subunit superfamily CFE88_RS03675 IPR008949 Isoprenoid synthase domain superfamily CFE88_RS03675 IPR000092 Polyprenyl synthetase CFE88_RS03675 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS03680 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03680 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03680 IPR020900 Arginine repressor, DNA-binding domain CFE88_RS03680 IPR036251 Arginine repressor, C-terminal domain superfamily CFE88_RS03680 IPR020899 Arginine repressor, C-terminal CFE88_RS03680 IPR001669 Arginine repressor CFE88_RS03685 IPR004604 DNA recombination/repair protein RecN CFE88_RS03685 IPR038729 Rad50/SbcC-type AAA domain CFE88_RS03685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03690 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS03690 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS03690 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS03690 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CFE88_RS03690 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS03690 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS03690 IPR023753 FAD/NAD(P)-binding domain CFE88_RS03695 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03695 IPR001017 Dehydrogenase, E1 component CFE88_RS03700 IPR033248 Transketolase, C-terminal domain CFE88_RS03700 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS03700 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CFE88_RS03700 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03705 IPR004167 Peripheral subunit-binding domain CFE88_RS03705 IPR011053 Single hybrid motif CFE88_RS03705 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS03705 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS03705 IPR000089 Biotin/lipoyl attachment CFE88_RS03705 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CFE88_RS03705 IPR036625 E3-binding domain superfamily CFE88_RS03710 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS03710 IPR036249 Thioredoxin-like superfamily CFE88_RS03715 IPR021062 Putative aromatic acid exporter, C-terminal CFE88_RS03715 IPR010343 Aromatic acid exporter family member 1 CFE88_RS03715 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily CFE88_RS03720 IPR008007 Peptidase M42 CFE88_RS03720 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS03720 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS03720 IPR010162 Peptidase M20B, peptidase T-like CFE88_RS03720 IPR002933 Peptidase M20 CFE88_RS03720 IPR011650 Peptidase M20, dimerisation domain CFE88_RS03725 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS03725 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CFE88_RS03725 IPR006114 6-phosphogluconate dehydrogenase, C-terminal CFE88_RS03725 IPR006183 6-phosphogluconate dehydrogenase CFE88_RS03725 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03725 IPR006184 6-phosphogluconate-binding site CFE88_RS03725 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CFE88_RS03725 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating CFE88_RS03730 IPR013780 Glycosyl hydrolase, all-beta CFE88_RS03730 IPR032091 Maltogenic Amylase, C-terminal CFE88_RS03730 IPR017853 Glycoside hydrolase superfamily CFE88_RS03730 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CFE88_RS03740 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS03740 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS03740 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03740 IPR019796 Glucose-6-phosphate dehydrogenase, active site CFE88_RS03740 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS03745 IPR001279 Metallo-beta-lactamase CFE88_RS03745 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS03745 IPR013471 Ribonuclease Z/BN CFE88_RS03750 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS03750 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03750 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CFE88_RS03750 IPR000304 Pyrroline-5-carboxylate reductase CFE88_RS03750 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CFE88_RS03755 IPR005979 Light-dependent protochlorophyllide reductase CFE88_RS03755 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS03755 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03760 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS03760 IPR036812 NADP-dependent oxidoreductase domain superfamily CFE88_RS03760 IPR020471 Aldo/keto reductase CFE88_RS03765 IPR020476 NUDIX hydrolase CFE88_RS03765 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS03765 IPR020084 NUDIX hydrolase, conserved site CFE88_RS03765 IPR000086 NUDIX hydrolase domain CFE88_RS03770 IPR002481 Ferric-uptake regulator CFE88_RS03770 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03770 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03775 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS03775 IPR013762 Integrase-like, catalytic domain superfamily CFE88_RS03775 IPR002104 Integrase, catalytic domain CFE88_RS03775 IPR010998 Integrase/recombinase, N-terminal CFE88_RS03775 IPR004107 Integrase, SAM-like, N-terminal CFE88_RS03775 IPR011932 Tyrosine recombinase XerD CFE88_RS03775 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS03780 IPR005500 Protein of unknown function DUF309 CFE88_RS03780 IPR023203 TTHA0068-like superfamily CFE88_RS03785 IPR003768 Segregation and condensation protein A CFE88_RS03790 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03790 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03790 IPR005234 Chromosome segregation/condensation protein ScpB CFE88_RS03795 IPR036986 RNA-binding S4 domain superfamily CFE88_RS03795 IPR002942 RNA-binding S4 domain CFE88_RS03795 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CFE88_RS03795 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CFE88_RS03795 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS03795 IPR006145 Pseudouridine synthase, RsuA/RluA CFE88_RS03795 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CFE88_RS03800 IPR011006 CheY-like superfamily CFE88_RS03800 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS03800 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03800 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS03800 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS03805 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS03805 IPR005467 Histidine kinase domain CFE88_RS03805 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS03805 IPR041328 ResE, histidine kinase sensor domain CFE88_RS03805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS03805 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS03805 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS03805 IPR003660 HAMP domain CFE88_RS03810 IPR024529 ECF transporter, substrate-specific component CFE88_RS03810 IPR025720 ECF transporter, Riboflavin transporter RibU CFE88_RS03820 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS03820 IPR001080 3Fe-4S ferredoxin CFE88_RS03830 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS03830 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site CFE88_RS03830 IPR004589 DNA helicase, ATP-dependent, RecQ type CFE88_RS03830 IPR001650 Helicase, C-terminal CFE88_RS03830 IPR011545 DEAD/DEAH box helicase domain CFE88_RS03830 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03835 IPR018392 LysM domain CFE88_RS03835 IPR036779 LysM domain superfamily CFE88_RS03840 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA CFE88_RS03840 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS03845 IPR006034 Asparaginase/glutaminase-like CFE88_RS03845 IPR037152 L-asparaginase, N-terminal domain superfamily CFE88_RS03845 IPR027474 L-asparaginase, N-terminal CFE88_RS03845 IPR027473 L-asparaginase, C-terminal CFE88_RS03845 IPR040919 Asparaginase/glutaminase, C-terminal CFE88_RS03845 IPR027475 Asparaginase/glutaminase, active site 2 CFE88_RS03845 IPR020827 Asparaginase/glutaminase, active site 1 CFE88_RS03845 IPR036152 Asparaginase/glutaminase-like superfamily CFE88_RS03845 IPR004550 L-asparaginase, type II CFE88_RS03850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03850 IPR011994 Cytidylate kinase domain CFE88_RS03850 IPR003136 Cytidylate kinase CFE88_RS03855 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03855 IPR022967 RNA-binding domain, S1 CFE88_RS03855 IPR003029 S1 domain CFE88_RS03860 IPR032859 GTPase Der, C-terminal KH-domain-like CFE88_RS03860 IPR006073 GTP binding domain CFE88_RS03860 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03860 IPR031166 EngA-type guanine nucleotide-binding (G) domain CFE88_RS03860 IPR005225 Small GTP-binding protein domain CFE88_RS03860 IPR015946 K homology domain-like, alpha/beta CFE88_RS03860 IPR016484 GTP-binding protein EngA CFE88_RS03865 IPR036291 NAD(P)-binding domain superfamily CFE88_RS03865 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CFE88_RS03865 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CFE88_RS03865 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS03865 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CFE88_RS03865 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CFE88_RS03870 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CFE88_RS03870 IPR020816 Histone-like DNA-binding protein, conserved site CFE88_RS03870 IPR000119 Histone-like DNA-binding protein CFE88_RS03880 IPR004033 UbiE/COQ5 methyltransferase CFE88_RS03880 IPR023576 UbiE/COQ5 methyltransferase, conserved site CFE88_RS03880 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03885 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS03885 IPR014119 Heptaprenyl diphosphate synthase component II CFE88_RS03885 IPR008949 Isoprenoid synthase domain superfamily CFE88_RS03885 IPR000092 Polyprenyl synthetase CFE88_RS03890 IPR001564 Nucleoside diphosphate kinase CFE88_RS03890 IPR036850 Nucleoside diphosphate kinase-like domain superfamily CFE88_RS03890 IPR034907 Nucleoside diphosphate kinase-like domain CFE88_RS03895 IPR000453 Chorismate synthase CFE88_RS03895 IPR035904 Chorismate synthase AroC superfamily CFE88_RS03895 IPR020541 Chorismate synthase, conserved site CFE88_RS03900 IPR016037 3-dehydroquinate synthase AroB CFE88_RS03900 IPR030963 3-dehydroquinate synthase family CFE88_RS03900 IPR030960 3-dehydroquinate synthase domain CFE88_RS03905 IPR001986 Enolpyruvate transferase domain CFE88_RS03905 IPR036968 Enolpyruvate transferase domain superfamily CFE88_RS03905 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS03905 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CFE88_RS03905 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CFE88_RS03915 IPR014963 Uncharacterised domain UPF0302, N-terminal CFE88_RS03915 IPR011188 Uncharacterised protein family UPF0302 CFE88_RS03915 IPR014957 IDEAL domain CFE88_RS03915 IPR038091 UPF0302, N-terminal domain superfamily CFE88_RS03920 IPR009845 Protein of unknown function DUF1405 CFE88_RS03925 IPR007395 Putative neutral zinc metallopeptidase CFE88_RS03930 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD CFE88_RS03930 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS03935 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA CFE88_RS03935 IPR001296 Glycosyl transferase, family 1 CFE88_RS03935 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CFE88_RS03940 IPR032810 CCA-adding enzyme, C-terminal CFE88_RS03940 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CFE88_RS03940 IPR002646 Poly A polymerase, head domain CFE88_RS03940 IPR023068 CCA-adding enzyme, firmicutes CFE88_RS03945 IPR013196 Helix-turn-helix, type 11 CFE88_RS03945 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CFE88_RS03945 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03945 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS03945 IPR003142 Biotin protein ligase, C-terminal CFE88_RS03945 IPR004409 Biotin operon repressor, helix-turn-helix domain CFE88_RS03945 IPR004408 Biotin--acetyl-CoA-carboxylase ligase CFE88_RS03945 IPR008988 Transcriptional repressor, C-terminal CFE88_RS03945 IPR030855 Bifunctional ligase/repressor BirA CFE88_RS03950 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CFE88_RS03950 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS03950 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type CFE88_RS03950 IPR006555 ATP-dependent helicase, C-terminal CFE88_RS03950 IPR036397 Ribonuclease H superfamily CFE88_RS03950 IPR012337 Ribonuclease H-like superfamily CFE88_RS03950 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03950 IPR001650 Helicase, C-terminal CFE88_RS03950 IPR006935 Helicase/UvrB, N-terminal CFE88_RS03950 IPR006310 3'-5' exonuclease DinG CFE88_RS03955 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS03955 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03955 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CFE88_RS03955 IPR004522 Asparagine-tRNA ligase CFE88_RS03955 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS03955 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS03960 IPR006343 DnaD domain CFE88_RS03960 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS03960 IPR034829 DnaD-like domain superfamily CFE88_RS03965 IPR004035 Endonuclease III, iron-sulphur binding site CFE88_RS03965 IPR000445 Helix-hairpin-helix motif CFE88_RS03965 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS03965 IPR005759 Endonuclease III CFE88_RS03965 IPR004036 Endonuclease III-like, conserved site-2 CFE88_RS03965 IPR011257 DNA glycosylase CFE88_RS03965 IPR003265 HhH-GPD domain CFE88_RS03965 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CFE88_RS03975 IPR036950 Penicillin binding protein transglycosylase domain CFE88_RS03975 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS03975 IPR036116 Fibronectin type III superfamily CFE88_RS03975 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03975 IPR023346 Lysozyme-like domain superfamily CFE88_RS03975 IPR013783 Immunoglobulin-like fold CFE88_RS03975 IPR001264 Glycosyl transferase, family 51 CFE88_RS03975 IPR003961 Fibronectin type III CFE88_RS03980 IPR011856 tRNA endonuclease-like domain superfamily CFE88_RS03980 IPR004612 Holliday junction resolvase RecU CFE88_RS03980 IPR011335 Restriction endonuclease type II-like CFE88_RS03990 IPR010697 YspA SLOG family CFE88_RS03995 IPR011229 Cell cycle protein GpsB CFE88_RS03995 IPR019933 DivIVA domain CFE88_RS03995 IPR007793 DivIVA family CFE88_RS04005 IPR004114 THUMP domain CFE88_RS04005 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CFE88_RS04005 IPR000241 Putative RNA methylase domain CFE88_RS04005 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS04015 IPR027094 Mitofusin family CFE88_RS04015 IPR022812 Dynamin superfamily CFE88_RS04015 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04020 IPR038969 Flap endonuclease CFE88_RS04020 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CFE88_RS04020 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CFE88_RS04020 IPR020045 DNA polymerase I-like, H3TH domain CFE88_RS04020 IPR029060 PIN-like domain superfamily CFE88_RS04020 IPR008918 Helix-hairpin-helix motif, class 2 CFE88_RS04020 IPR002421 5'-3' exonuclease, N-terminal CFE88_RS04025 IPR002988 Protein G-related albumin-binding (GA) module CFE88_RS04025 IPR009063 Immunoglobulin/albumin-binding domain superfamily CFE88_RS04025 IPR026361 Extracellular matrix-binding protein Ebh domain CFE88_RS04025 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04035 IPR003744 Queuosine precursor transporter CFE88_RS04040 IPR019718 Protein of unknown function DUF2602 CFE88_RS04045 IPR011989 Armadillo-like helical CFE88_RS04045 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS04045 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily CFE88_RS04045 IPR004155 PBS lyase HEAT-like repeat CFE88_RS04045 IPR025989 Virulence factor domain CFE88_RS04045 IPR016024 Armadillo-type fold CFE88_RS04050 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS04050 IPR036249 Thioredoxin-like superfamily CFE88_RS04060 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04060 IPR025857 MacB-like periplasmic core domain CFE88_RS04060 IPR017911 ABC transporter, macrolide export, ATP-binding domain CFE88_RS04060 IPR003593 AAA+ ATPase domain CFE88_RS04060 IPR003838 ABC transporter permease protein domain CFE88_RS04060 IPR003439 ABC transporter-like CFE88_RS04060 IPR017871 ABC transporter, conserved site CFE88_RS04065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04065 IPR003439 ABC transporter-like CFE88_RS04065 IPR003593 AAA+ ATPase domain CFE88_RS04070 IPR020940 Thymidylate synthase, active site CFE88_RS04070 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CFE88_RS04070 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily CFE88_RS04070 IPR000398 Thymidylate synthase CFE88_RS04075 IPR001796 Dihydrofolate reductase domain CFE88_RS04075 IPR024072 Dihydrofolate reductase-like domain superfamily CFE88_RS04075 IPR012259 Dihydrofolate reductase CFE88_RS04075 IPR017925 Dihydrofolate reductase conserved site CFE88_RS04080 IPR003797 DegV CFE88_RS04085 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CFE88_RS04085 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS04090 IPR028427 Peptide methionine sulfoxide reductase CFE88_RS04090 IPR011057 Mss4-like superfamily CFE88_RS04090 IPR002579 Peptide methionine sulphoxide reductase MrsB CFE88_RS04095 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CFE88_RS04095 IPR011055 Duplicated hybrid motif CFE88_RS04100 IPR010673 Protein of unknown function UPF0346 CFE88_RS04100 IPR023089 YozE SAM-like domain CFE88_RS04100 IPR036806 YozE SAM-like superfamily CFE88_RS04105 IPR036365 PGBD-like superfamily CFE88_RS04105 IPR005151 Tail specific protease CFE88_RS04105 IPR001478 PDZ domain CFE88_RS04105 IPR041489 PDZ domain 6 CFE88_RS04105 IPR036034 PDZ superfamily CFE88_RS04105 IPR002477 Peptidoglycan binding-like CFE88_RS04105 IPR036366 PGBD superfamily CFE88_RS04105 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS04105 IPR004447 C-terminal-processing peptidase S41A CFE88_RS04120 IPR006009 N-acetylglucosaminyltransferase, MurG CFE88_RS04120 IPR007235 Glycosyl transferase, family 28, C-terminal CFE88_RS04120 IPR004276 Glycosyltransferase family 28, N-terminal domain CFE88_RS04125 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS04125 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CFE88_RS04135 IPR011006 CheY-like superfamily CFE88_RS04135 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS04135 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS04135 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS04135 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS04135 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS04140 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS04140 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS04140 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS04140 IPR005467 Histidine kinase domain CFE88_RS04140 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS04140 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS04140 IPR003660 HAMP domain CFE88_RS04140 IPR041610 ArlS, sensor domain CFE88_RS04150 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04150 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04150 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily CFE88_RS04150 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal CFE88_RS04150 IPR001017 Dehydrogenase, E1 component CFE88_RS04150 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial CFE88_RS04150 IPR011603 2-oxoglutarate dehydrogenase E1 component CFE88_RS04155 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CFE88_RS04155 IPR006255 Dihydrolipoamide succinyltransferase CFE88_RS04155 IPR011053 Single hybrid motif CFE88_RS04155 IPR036625 E3-binding domain superfamily CFE88_RS04155 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS04155 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS04155 IPR000089 Biotin/lipoyl attachment CFE88_RS04155 IPR004167 Peripheral subunit-binding domain CFE88_RS04160 IPR017871 ABC transporter, conserved site CFE88_RS04160 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04160 IPR003593 AAA+ ATPase domain CFE88_RS04160 IPR003439 ABC transporter-like CFE88_RS04185 IPR011704 ATPase, dynein-related, AAA domain CFE88_RS04185 IPR003593 AAA+ ATPase domain CFE88_RS04185 IPR013615 CbbQ/NirQ/NorQ, C-terminal CFE88_RS04185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04185 IPR001270 ClpA/B family CFE88_RS04190 IPR002035 von Willebrand factor, type A CFE88_RS04190 IPR036465 von Willebrand factor A-like domain superfamily CFE88_RS04195 IPR004685 Branched-chain amino acid transport system II carrier protein CFE88_RS04200 IPR008863 Toxic anion resistance CFE88_RS04210 IPR017968 Acylphosphatase, conserved site CFE88_RS04210 IPR036046 Acylphosphatase-like domain superfamily CFE88_RS04210 IPR001792 Acylphosphatase-like domain CFE88_RS04220 IPR012156 Cold shock, CspA CFE88_RS04220 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS04220 IPR002059 Cold-shock protein, DNA-binding CFE88_RS04220 IPR019844 Cold-shock (CSD) domain CFE88_RS04220 IPR011129 Cold shock domain CFE88_RS04235 IPR002986 Diaminopimelate decarboxylase, LysA CFE88_RS04235 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS04235 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CFE88_RS04235 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CFE88_RS04235 IPR000183 Ornithine/DAP/Arg decarboxylase CFE88_RS04235 IPR029066 PLP-binding barrel CFE88_RS04235 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CFE88_RS04240 IPR001608 Alanine racemase, N-terminal CFE88_RS04240 IPR029066 PLP-binding barrel CFE88_RS04240 IPR000821 Alanine racemase CFE88_RS04240 IPR011079 Alanine racemase, C-terminal CFE88_RS04240 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS04245 IPR011650 Peptidase M20, dimerisation domain CFE88_RS04245 IPR002933 Peptidase M20 CFE88_RS04245 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS04245 IPR017439 Amidohydrolase CFE88_RS04250 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH CFE88_RS04250 IPR018357 Hexapeptide transferase, conserved site CFE88_RS04250 IPR001451 Hexapeptide repeat CFE88_RS04250 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal CFE88_RS04250 IPR011004 Trimeric LpxA-like superfamily CFE88_RS04255 IPR023940 Dihydrodipicolinate reductase CFE88_RS04255 IPR000846 Dihydrodipicolinate reductase, N-terminal CFE88_RS04255 IPR022664 Dihydrodipicolinate reductase, conserved site CFE88_RS04255 IPR036291 NAD(P)-binding domain superfamily CFE88_RS04255 IPR022663 Dihydrodipicolinate reductase, C-terminal CFE88_RS04260 IPR013785 Aldolase-type TIM barrel CFE88_RS04260 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CFE88_RS04260 IPR002220 DapA-like CFE88_RS04260 IPR020625 Schiff base-forming aldolase, active site CFE88_RS04265 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS04265 IPR000534 Semialdehyde dehydrogenase, NAD-binding CFE88_RS04265 IPR036291 NAD(P)-binding domain superfamily CFE88_RS04265 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type CFE88_RS04265 IPR012080 Aspartate-semialdehyde dehydrogenase CFE88_RS04265 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site CFE88_RS04270 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04270 IPR001341 Aspartate kinase CFE88_RS04270 IPR005260 Aspartate kinase, monofunctional class CFE88_RS04270 IPR018042 Aspartate kinase, conserved site CFE88_RS04270 IPR027795 CASTOR, ACT domain CFE88_RS04270 IPR041740 Aspartokinase catalytic domain CFE88_RS04270 IPR002912 ACT domain CFE88_RS04270 IPR036393 Acetylglutamate kinase-like superfamily CFE88_RS04275 IPR003593 AAA+ ATPase domain CFE88_RS04275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04275 IPR003439 ABC transporter-like CFE88_RS04275 IPR032781 ABC-transporter extension domain CFE88_RS04280 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS04280 IPR014464 Conserved virulence factor B CFE88_RS04280 IPR039566 Conserved virulence factor B, S1 domain CFE88_RS04280 IPR040764 Conserved virulence factor B-like, winged helix domain CFE88_RS04285 IPR011862 Phosphate binding protein CFE88_RS04285 IPR024370 PBP domain CFE88_RS04290 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS04290 IPR035906 MetI-like superfamily CFE88_RS04290 IPR011864 Phosphate ABC transporter, permease protein PstC CFE88_RS04295 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS04295 IPR035906 MetI-like superfamily CFE88_RS04295 IPR005672 Phosphate transport system permease protein PstA CFE88_RS04300 IPR003593 AAA+ ATPase domain CFE88_RS04300 IPR017871 ABC transporter, conserved site CFE88_RS04300 IPR003439 ABC transporter-like CFE88_RS04300 IPR005670 Phosphate transport system permease protein 1 CFE88_RS04300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04300 IPR015850 ABC transporter, phosphate import, PstB CFE88_RS04305 IPR026022 PhoU domain CFE88_RS04305 IPR028366 Phosphate transport system protein PhoU CFE88_RS04305 IPR038078 PhoU-like domain superfamily CFE88_RS04310 IPR004438 Peptidase M3B, oligoendopeptidase F CFE88_RS04310 IPR042088 Oligoendopeptidase F, C-terminal domain CFE88_RS04310 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS04310 IPR001567 Peptidase M3A/M3B catalytic domain CFE88_RS04320 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS04320 IPR035906 MetI-like superfamily CFE88_RS04325 IPR035906 MetI-like superfamily CFE88_RS04325 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS04330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04330 IPR003439 ABC transporter-like CFE88_RS04330 IPR003593 AAA+ ATPase domain CFE88_RS04335 IPR003439 ABC transporter-like CFE88_RS04335 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04335 IPR003593 AAA+ ATPase domain CFE88_RS04340 IPR002491 ABC transporter periplasmic binding domain CFE88_RS04340 IPR033870 FatB domain CFE88_RS04350 IPR003447 FemABX peptidyl transferase CFE88_RS04350 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04355 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04355 IPR003447 FemABX peptidyl transferase CFE88_RS04355 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CFE88_RS04370 IPR002028 Tryptophan synthase, alpha chain CFE88_RS04370 IPR018204 Tryptophan synthase, alpha chain, active site CFE88_RS04370 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04370 IPR013785 Aldolase-type TIM barrel CFE88_RS04375 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04375 IPR023026 Tryptophan synthase beta chain/beta chain-like CFE88_RS04375 IPR006654 Tryptophan synthase, beta chain CFE88_RS04375 IPR006653 Tryptophan synthase, beta chain, conserved site CFE88_RS04375 IPR001926 Pyridoxal-phosphate dependent enzyme CFE88_RS04380 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) CFE88_RS04380 IPR013785 Aldolase-type TIM barrel CFE88_RS04380 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04385 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04385 IPR013785 Aldolase-type TIM barrel CFE88_RS04385 IPR001468 Indole-3-glycerol phosphate synthase, conserved site CFE88_RS04385 IPR013798 Indole-3-glycerol phosphate synthase CFE88_RS04390 IPR000312 Glycosyl transferase, family 3 CFE88_RS04390 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CFE88_RS04390 IPR005940 Anthranilate phosphoribosyl transferase CFE88_RS04390 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CFE88_RS04395 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CFE88_RS04395 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04395 IPR017926 Glutamine amidotransferase CFE88_RS04400 IPR019999 Anthranilate synthase component I-like CFE88_RS04400 IPR005801 ADC synthase CFE88_RS04400 IPR006805 Anthranilate synthase component I, N-terminal CFE88_RS04400 IPR005256 Anthranilate synthase component I, PabB-like CFE88_RS04400 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS04405 IPR036291 NAD(P)-binding domain superfamily CFE88_RS04405 IPR002912 ACT domain CFE88_RS04405 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS04405 IPR003099 Prephenate dehydrogenase CFE88_RS04410 IPR001126 UmuC domain CFE88_RS04410 IPR017961 DNA polymerase, Y-family, little finger domain CFE88_RS04410 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CFE88_RS04410 IPR024728 DNA polymerase type-Y, HhH motif CFE88_RS04415 IPR004370 4-oxalocrotonate tautomerase CFE88_RS04415 IPR014347 Tautomerase/MIF superfamily CFE88_RS04415 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type CFE88_RS04420 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS04425 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CFE88_RS04425 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS04430 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CFE88_RS04430 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal CFE88_RS04430 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04435 IPR002549 Transmembrane protein TqsA-like CFE88_RS04440 IPR011608 PRD domain CFE88_RS04440 IPR036650 CAT RNA-binding domain superfamily CFE88_RS04440 IPR001550 Transcription antiterminator, conserved site CFE88_RS04440 IPR036634 PRD domain superfamily CFE88_RS04440 IPR004341 CAT RNA-binding domain CFE88_RS04445 IPR001463 Sodium:alanine symporter CFE88_RS04450 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CFE88_RS04450 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CFE88_RS04450 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CFE88_RS04450 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CFE88_RS04450 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CFE88_RS04450 IPR005741 DNA topoisomerase IV subunit A, Gram-positive CFE88_RS04450 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CFE88_RS04455 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CFE88_RS04455 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CFE88_RS04455 IPR006171 TOPRIM domain CFE88_RS04455 IPR018522 DNA topoisomerase, type IIA, conserved site CFE88_RS04455 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CFE88_RS04455 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04455 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04455 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes CFE88_RS04455 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS04455 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS04455 IPR002288 DNA gyrase B subunit, C-terminal CFE88_RS04455 IPR001241 DNA topoisomerase, type IIA CFE88_RS04460 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY CFE88_RS04465 IPR008326 Uncharacterised conserved protein UCP034852 CFE88_RS04465 IPR035903 HesB-like domain superfamily CFE88_RS04470 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family CFE88_RS04470 IPR029069 HotDog domain superfamily CFE88_RS04470 IPR006683 Thioesterase domain CFE88_RS04475 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CFE88_RS04475 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CFE88_RS04475 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS04475 IPR036008 Aconitase, iron-sulfur domain CFE88_RS04475 IPR018136 Aconitase family, 4Fe-4S cluster binding site CFE88_RS04475 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CFE88_RS04475 IPR006249 Aconitase/Iron-responsive element-binding protein 2 CFE88_RS04480 IPR000060 BCCT transporter family CFE88_RS04480 IPR018093 BCCT transporter, conserved site CFE88_RS04485 IPR036019 Gated mechanosensitive channel CFE88_RS04485 IPR019823 Large-conductance mechanosensitive channel, conserved site CFE88_RS04485 IPR001185 Large-conductance mechanosensitive channel CFE88_RS04485 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CFE88_RS04490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04490 IPR038729 Rad50/SbcC-type AAA domain CFE88_RS04495 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04495 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain CFE88_RS04495 IPR004593 Nuclease SbcCD subunit D CFE88_RS04495 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CFE88_RS04495 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CFE88_RS04500 IPR031306 CcdC protein CFE88_RS04510 IPR005478 Transketolase, bacterial-like CFE88_RS04510 IPR005474 Transketolase, N-terminal CFE88_RS04510 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04510 IPR033247 Transketolase family CFE88_RS04510 IPR033248 Transketolase, C-terminal domain CFE88_RS04510 IPR020826 Transketolase binding site CFE88_RS04510 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04510 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CFE88_RS04515 IPR009242 Protein of unknown function DUF896 CFE88_RS04525 IPR006200 Transcription regulator LexA CFE88_RS04525 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS04525 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS04525 IPR039418 LexA-like CFE88_RS04525 IPR036286 LexA/Signal peptidase-like superfamily CFE88_RS04525 IPR006199 LexA repressor, DNA-binding domain CFE88_RS04525 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS04525 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS04525 IPR006197 Peptidase S24, LexA-like CFE88_RS04540 IPR005994 Guanosine monophosphate reductase, type2 CFE88_RS04540 IPR013785 Aldolase-type TIM barrel CFE88_RS04540 IPR001093 IMP dehydrogenase/GMP reductase CFE88_RS04540 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CFE88_RS04545 IPR023036 Ribosomal protein S14, bacterial/plastid CFE88_RS04545 IPR018271 Ribosomal protein S14, conserved site CFE88_RS04545 IPR001209 Ribosomal protein S14 CFE88_RS04550 IPR038584 Ribosomal protein L33 superfamily CFE88_RS04550 IPR001705 Ribosomal protein L33 CFE88_RS04550 IPR018264 Ribosomal protein L33, conserved site CFE88_RS04550 IPR011332 Zinc-binding ribosomal protein CFE88_RS04555 IPR010582 Catalase immune-responsive domain CFE88_RS04555 IPR002226 Catalase haem-binding site CFE88_RS04555 IPR011614 Catalase core domain CFE88_RS04555 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 CFE88_RS04555 IPR020835 Catalase superfamily CFE88_RS04555 IPR024708 Catalase active site CFE88_RS04555 IPR040333 Catalase, clade 3 CFE88_RS04555 IPR018028 Catalase, mono-functional, haem-containing CFE88_RS04555 IPR037060 Catalase core domain superfamily CFE88_RS04560 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS04560 IPR004840 Amino acid permease, conserved site CFE88_RS04570 IPR000150 Cof family CFE88_RS04570 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS04570 IPR036412 HAD-like superfamily CFE88_RS04575 IPR036554 GHMP kinase, C-terminal domain superfamily CFE88_RS04575 IPR000870 Homoserine kinase CFE88_RS04575 IPR006203 GHMP kinase, ATP-binding, conserved site CFE88_RS04575 IPR006204 GHMP kinase N-terminal domain CFE88_RS04575 IPR013750 GHMP kinase, C-terminal domain CFE88_RS04575 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04575 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04580 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CFE88_RS04580 IPR026260 Threonine synthase, bacterial/archaeal CFE88_RS04580 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04580 IPR004450 Threonine synthase-like CFE88_RS04580 IPR001926 Pyridoxal-phosphate dependent enzyme CFE88_RS04585 IPR002912 ACT domain CFE88_RS04585 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CFE88_RS04585 IPR016204 Homoserine dehydrogenase CFE88_RS04585 IPR001342 Homoserine dehydrogenase, catalytic CFE88_RS04585 IPR036291 NAD(P)-binding domain superfamily CFE88_RS04585 IPR019811 Homoserine dehydrogenase, conserved site CFE88_RS04590 IPR002912 ACT domain CFE88_RS04590 IPR035804 Aspartokinase 3, N-terminal CFE88_RS04590 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04590 IPR001341 Aspartate kinase CFE88_RS04590 IPR018042 Aspartate kinase, conserved site CFE88_RS04590 IPR005260 Aspartate kinase, monofunctional class CFE88_RS04590 IPR036393 Acetylglutamate kinase-like superfamily CFE88_RS04590 IPR027795 CASTOR, ACT domain CFE88_RS04610 IPR002071 Thermonuclease active site CFE88_RS04610 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CFE88_RS04610 IPR035437 SNase-like, OB-fold superfamily CFE88_RS04620 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS04620 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS04620 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS04620 IPR011006 CheY-like superfamily CFE88_RS04625 IPR005467 Histidine kinase domain CFE88_RS04625 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS04625 IPR008595 Sensor DegS CFE88_RS04625 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS04625 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS04625 IPR016381 Signal transduction histidine kinase, DegS CFE88_RS04635 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04635 IPR017871 ABC transporter, conserved site CFE88_RS04635 IPR003593 AAA+ ATPase domain CFE88_RS04635 IPR003439 ABC transporter-like CFE88_RS04640 IPR027379 Cardiolipin synthase N-terminal CFE88_RS04640 IPR022924 Cardiolipin synthase CFE88_RS04640 IPR001736 Phospholipase D/Transphosphatidylase CFE88_RS04640 IPR025202 Phospholipase D-like domain CFE88_RS04640 IPR030874 Cardiolipin synthase, Firmicutes-type CFE88_RS04700 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CFE88_RS04700 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS04700 IPR038200 GW domain superfamily CFE88_RS04700 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS04700 IPR025987 GW domain CFE88_RS04705 IPR006480 Bacteriophage holin family CFE88_RS04775 IPR008979 Galactose-binding-like domain superfamily CFE88_RS04775 IPR003343 Bacterial Ig-like, group 2 CFE88_RS04775 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CFE88_RS04775 IPR036278 Sialidase superfamily CFE88_RS04775 IPR008964 Invasin/intimin cell-adhesion fragments CFE88_RS04775 IPR000421 Coagulation factor 5/8 C-terminal domain CFE88_RS04805 IPR035413 Phage terminase large subunit, C-terminal CFE88_RS04805 IPR006437 Bacteriophage terminase, large subunit CFE88_RS04805 IPR035412 Phage terminase large subunit, N-terminal CFE88_RS04900 IPR008147 Glutamine synthetase, beta-Grasp domain CFE88_RS04900 IPR027302 Glutamine synthetase, N-terminal conserved site CFE88_RS04900 IPR036651 Glutamine synthetase, N-terminal domain superfamily CFE88_RS04900 IPR004809 Glutamine synthetase type I CFE88_RS04900 IPR008146 Glutamine synthetase, catalytic domain CFE88_RS04900 IPR027303 Glutamine synthetase, glycine-rich site CFE88_RS04900 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CFE88_RS04905 IPR000551 MerR-type HTH domain CFE88_RS04905 IPR009061 Putative DNA-binding domain superfamily CFE88_RS04910 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS04910 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04910 IPR009651 Putative methionine gamma-lyase CFE88_RS04915 IPR016496 GTPase HflX CFE88_RS04915 IPR006073 GTP binding domain CFE88_RS04915 IPR032305 GTP-binding protein, middle domain CFE88_RS04915 IPR025121 GTPase HflX, N-terminal CFE88_RS04915 IPR042108 GTPase HflX, N-terminal domain superfamily CFE88_RS04915 IPR005225 Small GTP-binding protein domain CFE88_RS04915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04915 IPR030394 HflX-type guanine nucleotide-binding (G) domain CFE88_RS04920 IPR036249 Thioredoxin-like superfamily CFE88_RS04920 IPR029760 Glutathione peroxidase conserved site CFE88_RS04920 IPR000889 Glutathione peroxidase CFE88_RS04925 IPR010920 LSM domain superfamily CFE88_RS04925 IPR005001 RNA-binding protein Hfq CFE88_RS04930 IPR018022 IPP transferase CFE88_RS04930 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04930 IPR039657 Dimethylallyltransferase CFE88_RS04935 IPR000639 Epoxide hydrolase-like CFE88_RS04935 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS04935 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04940 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily CFE88_RS04940 IPR006076 FAD dependent oxidoreductase CFE88_RS04940 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS04940 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase CFE88_RS04940 IPR031656 Alpha-glycerophosphate oxidase, C-terminal CFE88_RS04945 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS04945 IPR000577 Carbohydrate kinase, FGGY CFE88_RS04945 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS04945 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS04945 IPR005999 Glycerol kinase CFE88_RS04950 IPR022357 Major intrinsic protein, conserved site CFE88_RS04950 IPR000425 Major intrinsic protein CFE88_RS04950 IPR023271 Aquaporin-like CFE88_RS04955 IPR006699 Glycerol uptake operon antiterminator CFE88_RS04955 IPR035928 GlpP-like superfamily CFE88_RS04960 IPR014790 MutL, C-terminal, dimerisation CFE88_RS04960 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms CFE88_RS04960 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS04960 IPR042121 MutL, C-terminal domain, regulatory subdomain CFE88_RS04960 IPR013507 DNA mismatch repair protein, S5 domain 2-like CFE88_RS04960 IPR002099 DNA mismatch repair protein family, N-terminal CFE88_RS04960 IPR020667 DNA mismatch repair protein, MutL CFE88_RS04960 IPR014762 DNA mismatch repair, conserved site CFE88_RS04960 IPR037198 MutL, C-terminal domain superfamily CFE88_RS04960 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04960 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04960 IPR042120 MutL, C-terminal domain, dimerisation subdomain CFE88_RS04965 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CFE88_RS04965 IPR007860 DNA mismatch repair protein MutS, connector domain CFE88_RS04965 IPR036678 MutS, connector domain superfamily CFE88_RS04965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04965 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS04965 IPR007861 DNA mismatch repair protein MutS, clamp CFE88_RS04965 IPR017261 DNA mismatch repair protein MutS/MSH CFE88_RS04965 IPR016151 DNA mismatch repair protein MutS, N-terminal CFE88_RS04965 IPR007696 DNA mismatch repair protein MutS, core CFE88_RS04965 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CFE88_RS04965 IPR005748 DNA mismatch repair protein MutS CFE88_RS04975 IPR016783 Biofilm formation YmcA CFE88_RS04975 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS04975 IPR023378 YheA/YmcA-like domain superfamily CFE88_RS04980 IPR002792 TRAM domain CFE88_RS04980 IPR038135 Methylthiotransferase, N-terminal domain superfamily CFE88_RS04980 IPR005839 Methylthiotransferase CFE88_RS04980 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS04980 IPR007197 Radical SAM CFE88_RS04980 IPR020612 Methylthiotransferase, conserved site CFE88_RS04980 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB CFE88_RS04980 IPR013848 Methylthiotransferase, N-terminal CFE88_RS04980 IPR006638 Elp3/MiaB/NifB CFE88_RS04990 IPR038128 Poly-gamma-glutamate hydrolase superfamily CFE88_RS04990 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS04995 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS04995 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05000 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CFE88_RS05000 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05000 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal CFE88_RS05000 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CFE88_RS05000 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain CFE88_RS05000 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit CFE88_RS05000 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain CFE88_RS05005 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05005 IPR005235 Metallophosphoesterase, YmdB-like CFE88_RS05015 IPR004087 K Homology domain CFE88_RS05015 IPR017705 Ribonuclease Y CFE88_RS05015 IPR006675 HDIG domain CFE88_RS05015 IPR022711 Ribonuclease Y, N-terminal CFE88_RS05015 IPR036612 K Homology domain, type 1 superfamily CFE88_RS05015 IPR004088 K Homology domain, type 1 CFE88_RS05015 IPR003607 HD/PDEase domain CFE88_RS05015 IPR006674 HD domain CFE88_RS05020 IPR003593 AAA+ ATPase domain CFE88_RS05020 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05020 IPR013765 DNA recombination and repair protein RecA CFE88_RS05020 IPR020584 DNA recombination/repair protein RecA, conserved site CFE88_RS05020 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CFE88_RS05020 IPR023400 DNA recombination and repair protein RecA, C-terminal CFE88_RS05020 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface CFE88_RS05025 IPR008136 CinA, C-terminal CFE88_RS05025 IPR041424 CinA, KH domain CFE88_RS05025 IPR008135 Competence-induced protein CinA CFE88_RS05025 IPR036425 MoaB/Mog-like domain superfamily CFE88_RS05025 IPR001453 MoaB/Mog domain CFE88_RS05025 IPR036653 CinA-like, C-terminal CFE88_RS05030 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CFE88_RS05030 IPR000462 CDP-alcohol phosphatidyltransferase CFE88_RS05040 IPR002912 ACT domain CFE88_RS05040 IPR024514 Domain of unknown function DUF3388 CFE88_RS05040 IPR016784 Uncharacterised protein UCP021288 with ACT domain CFE88_RS05045 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 IPR036291 NAD(P)-binding domain superfamily CFE88_RS05050 IPR007863 Peptidase M16, C-terminal CFE88_RS05050 IPR011765 Peptidase M16, N-terminal CFE88_RS05050 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS05055 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS05055 IPR007863 Peptidase M16, C-terminal CFE88_RS05060 IPR000524 Transcription regulator HTH, GntR CFE88_RS05060 IPR011663 UbiC transcription regulator-associated CFE88_RS05060 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS05060 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS05060 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CFE88_RS05065 IPR003593 AAA+ ATPase domain CFE88_RS05065 IPR041027 FtsK alpha domain CFE88_RS05065 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS05065 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS05065 IPR002543 FtsK domain CFE88_RS05065 IPR018541 FtsK gamma domain CFE88_RS05065 IPR036259 MFS transporter superfamily CFE88_RS05065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05070 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CFE88_RS05070 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS05070 IPR030854 Ribonuclease J, bacteria CFE88_RS05070 IPR041636 Ribonuclease J, C-terminal CFE88_RS05070 IPR042173 Ribonuclease J, domain 2 CFE88_RS05070 IPR004613 Ribonuclease J CFE88_RS05070 IPR001279 Metallo-beta-lactamase CFE88_RS05075 IPR022967 RNA-binding domain, S1 CFE88_RS05075 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily CFE88_RS05075 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CFE88_RS05075 IPR027408 PNPase/RNase PH domain superfamily CFE88_RS05075 IPR012162 Polyribonucleotide nucleotidyltransferase CFE88_RS05075 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05075 IPR036612 K Homology domain, type 1 superfamily CFE88_RS05075 IPR004088 K Homology domain, type 1 CFE88_RS05075 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS05075 IPR036345 Exoribonuclease, PH domain 2 superfamily CFE88_RS05075 IPR015847 Exoribonuclease, phosphorolytic domain 2 CFE88_RS05075 IPR001247 Exoribonuclease, phosphorolytic domain 1 CFE88_RS05075 IPR004087 K Homology domain CFE88_RS05075 IPR003029 S1 domain CFE88_RS05080 IPR005290 Ribosomal protein S15, bacterial-type CFE88_RS05080 IPR000589 Ribosomal protein S15 CFE88_RS05080 IPR009068 S15/NS1, RNA-binding CFE88_RS05085 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05085 IPR004821 Cytidyltransferase-like domain CFE88_RS05085 IPR023468 Riboflavin kinase CFE88_RS05085 IPR015864 FAD synthetase CFE88_RS05085 IPR023465 Riboflavin kinase domain superfamily CFE88_RS05085 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CFE88_RS05085 IPR002606 Riboflavin kinase, bacterial CFE88_RS05090 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS05090 IPR002501 Pseudouridine synthase II, N-terminal CFE88_RS05090 IPR014780 tRNA pseudouridine synthase II, TruB CFE88_RS05090 IPR032819 tRNA pseudouridylate synthase B, C-terminal CFE88_RS05095 IPR023799 Ribosome-binding factor A domain superfamily CFE88_RS05095 IPR000238 Ribosome-binding factor A CFE88_RS05095 IPR015946 K homology domain-like, alpha/beta CFE88_RS05095 IPR020053 Ribosome-binding factor A, conserved site CFE88_RS05100 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05100 IPR000795 Transcription factor, GTP-binding domain CFE88_RS05100 IPR000178 Translation initiation factor aIF-2, bacterial-like CFE88_RS05100 IPR006847 Translation initiation factor IF-2, N-terminal CFE88_RS05100 IPR005225 Small GTP-binding protein domain CFE88_RS05100 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS05100 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CFE88_RS05100 IPR023115 Translation initiation factor IF- 2, domain 3 CFE88_RS05100 IPR015760 Translation initiation factor IF- 2 CFE88_RS05105 IPR039107 Ribosomal protein YlxQ CFE88_RS05105 IPR004037 Ribosomal protein L7Ae conserved site CFE88_RS05105 IPR029064 50S ribosomal protein L30e-like CFE88_RS05105 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS05105 IPR039109 Ribosomal protein L30/YlxQ CFE88_RS05110 IPR035931 YlxR-like superfamily CFE88_RS05110 IPR007393 Domain of unknown function DUF448 CFE88_RS05110 IPR037465 Uncharacterized protein YlxR CFE88_RS05115 IPR009019 K homology domain superfamily, prokaryotic type CFE88_RS05115 IPR003029 S1 domain CFE88_RS05115 IPR004087 K Homology domain CFE88_RS05115 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05115 IPR030842 Transcription termination/antitermination protein NusA, bacterial CFE88_RS05115 IPR015946 K homology domain-like, alpha/beta CFE88_RS05115 IPR022967 RNA-binding domain, S1 CFE88_RS05115 IPR036555 NusA, N-terminal domain superfamily CFE88_RS05115 IPR010213 Transcription termination factor NusA CFE88_RS05115 IPR013735 Transcription factor NusA, N-terminal CFE88_RS05115 IPR025249 KH domain, NusA-like CFE88_RS05120 IPR035956 RimP, N-terminal domain superfamily CFE88_RS05120 IPR028989 Ribosome maturation factor RimP, N-terminal CFE88_RS05120 IPR003728 Ribosome maturation factor RimP CFE88_RS05120 IPR028998 Ribosome maturation factor RimP, C-terminal CFE88_RS05120 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CFE88_RS05125 IPR004013 PHP domain CFE88_RS05125 IPR024754 DNA polymerase III polC-like, N-terminal domain II CFE88_RS05125 IPR040982 DNA polymerase III alpha subunit finger domain CFE88_RS05125 IPR028112 DNA polymerase III polC-type, N-terminal domain I CFE88_RS05125 IPR029460 DNA polymerase, helix-hairpin-helix motif CFE88_RS05125 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CFE88_RS05125 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CFE88_RS05125 IPR036397 Ribonuclease H superfamily CFE88_RS05125 IPR012337 Ribonuclease H-like superfamily CFE88_RS05125 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CFE88_RS05125 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05125 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS05130 IPR004154 Anticodon-binding CFE88_RS05130 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CFE88_RS05130 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CFE88_RS05130 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CFE88_RS05130 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CFE88_RS05130 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CFE88_RS05130 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS05130 IPR033730 Prokaryote proline-tRNA ligase core domain CFE88_RS05130 IPR002316 Proline-tRNA ligase, class IIa CFE88_RS05130 IPR036621 Anticodon-binding domain superfamily CFE88_RS05135 IPR008915 Peptidase M50 CFE88_RS05135 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CFE88_RS05135 IPR036034 PDZ superfamily CFE88_RS05135 IPR001478 PDZ domain CFE88_RS05140 IPR000374 Phosphatidate cytidylyltransferase CFE88_RS05145 IPR001441 Decaprenyl diphosphate synthase-like CFE88_RS05145 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CFE88_RS05145 IPR036424 Decaprenyl diphosphate synthase-like superfamily CFE88_RS05150 IPR002661 Ribosome recycling factor CFE88_RS05150 IPR023584 Ribosome recycling factor domain CFE88_RS05150 IPR036191 RRF superfamily CFE88_RS05155 IPR036393 Acetylglutamate kinase-like superfamily CFE88_RS05155 IPR011817 Uridylate kinase CFE88_RS05155 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS05155 IPR015963 Uridylate kinase, bacteria CFE88_RS05160 IPR018101 Translation elongation factor Ts, conserved site CFE88_RS05160 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CFE88_RS05160 IPR001816 Translation elongation factor EFTs/EF1B CFE88_RS05160 IPR036402 Elongation factor Ts, dimerisation domain superfamily CFE88_RS05160 IPR009060 UBA-like superfamily CFE88_RS05165 IPR001865 Ribosomal protein S2 CFE88_RS05165 IPR018130 Ribosomal protein S2, conserved site CFE88_RS05165 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CFE88_RS05165 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CFE88_RS05170 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS05170 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal CFE88_RS05170 IPR029016 GAF-like domain superfamily CFE88_RS05170 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY CFE88_RS05170 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CFE88_RS05170 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS05175 IPR019489 Clp ATPase, C-terminal CFE88_RS05175 IPR003959 ATPase, AAA-type, core CFE88_RS05175 IPR004491 Heat shock protein HslU CFE88_RS05175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05175 IPR003593 AAA+ ATPase domain CFE88_RS05180 IPR022281 ATP-dependent protease, HslV subunit CFE88_RS05180 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS05180 IPR001353 Proteasome, subunit alpha/beta CFE88_RS05180 IPR023333 Proteasome B-type subunit CFE88_RS05185 IPR002104 Integrase, catalytic domain CFE88_RS05185 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS05185 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS05185 IPR004107 Integrase, SAM-like, N-terminal CFE88_RS05185 IPR013762 Integrase-like, catalytic domain superfamily CFE88_RS05185 IPR010998 Integrase/recombinase, N-terminal CFE88_RS05185 IPR011931 Tyrosine recombinase XerC CFE88_RS05190 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CFE88_RS05190 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS05190 IPR020595 MnmG-related, conserved site CFE88_RS05190 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO CFE88_RS05195 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS05195 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CFE88_RS05195 IPR013497 DNA topoisomerase, type IA, central CFE88_RS05195 IPR023406 DNA topoisomerase, type IA, active site CFE88_RS05195 IPR034149 DNA topoisomerase 1, TOPRIM domain CFE88_RS05195 IPR003601 DNA topoisomerase, type IA, domain 2 CFE88_RS05195 IPR005733 DNA topoisomerase I, bacterial-type CFE88_RS05195 IPR000380 DNA topoisomerase, type IA CFE88_RS05195 IPR028612 DNA topoisomerase I, type IA CFE88_RS05195 IPR013498 DNA topoisomerase, type IA, zn finger CFE88_RS05195 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CFE88_RS05195 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CFE88_RS05195 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS05195 IPR006171 TOPRIM domain CFE88_RS05200 IPR003488 DNA recombination-mediator protein A CFE88_RS05205 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CFE88_RS05205 IPR036291 NAD(P)-binding domain superfamily CFE88_RS05205 IPR016102 Succinyl-CoA synthetase-like CFE88_RS05205 IPR003781 CoA-binding CFE88_RS05205 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CFE88_RS05205 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CFE88_RS05205 IPR005810 Succinyl-CoA ligase, alpha subunit CFE88_RS05210 IPR005809 Succinate--CoA synthetase, beta subunit CFE88_RS05210 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site CFE88_RS05210 IPR011761 ATP-grasp fold CFE88_RS05210 IPR016102 Succinyl-CoA synthetase-like CFE88_RS05210 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CFE88_RS05210 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type CFE88_RS05210 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05215 IPR012337 Ribonuclease H-like superfamily CFE88_RS05215 IPR036397 Ribonuclease H superfamily CFE88_RS05215 IPR022898 Ribonuclease HII CFE88_RS05215 IPR001352 Ribonuclease HII/HIII CFE88_RS05215 IPR024567 Ribonuclease HII/HIII domain CFE88_RS05220 IPR016478 GTPase, MTG1 CFE88_RS05220 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05220 IPR019991 GTP-binding protein, ribosome biogenesis CFE88_RS05220 IPR006073 GTP binding domain CFE88_RS05220 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily CFE88_RS05220 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CFE88_RS05230 IPR018580 Uncharacterised protein family YfhO CFE88_RS05240 IPR008991 Translation protein SH3-like domain superfamily CFE88_RS05240 IPR018257 Ribosomal protein L19, conserved site CFE88_RS05240 IPR001857 Ribosomal protein L19 CFE88_RS05240 IPR038657 Ribosomal protein L19 superfamily CFE88_RS05245 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05245 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal CFE88_RS05245 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CFE88_RS05245 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05245 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CFE88_RS05250 IPR036976 RimM, N-terminal domain superfamily CFE88_RS05250 IPR002676 RimM, N-terminal CFE88_RS05250 IPR011033 PRC-barrel-like superfamily CFE88_RS05250 IPR027275 PRC-barrel domain CFE88_RS05250 IPR011961 16S rRNA processing protein RimM CFE88_RS05250 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS05255 IPR023803 Ribosomal protein S16 domain superfamily CFE88_RS05255 IPR000307 Ribosomal protein S16 CFE88_RS05260 IPR003593 AAA+ ATPase domain CFE88_RS05260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05260 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CFE88_RS05260 IPR022941 Signal recognition particle, SRP54 subunit CFE88_RS05260 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily CFE88_RS05260 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CFE88_RS05260 IPR013822 Signal recognition particle SRP54, helical bundle CFE88_RS05260 IPR004125 Signal recognition particle, SRP54 subunit, M-domain CFE88_RS05260 IPR004780 Signal recognition particle protein CFE88_RS05265 IPR013324 RNA polymerase sigma factor, region 3/4-like CFE88_RS05265 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CFE88_RS05265 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS05270 IPR036225 SRP/SRP receptor, N-terminal CFE88_RS05270 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CFE88_RS05270 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CFE88_RS05270 IPR004390 Signal-recognition particle receptor FtsY CFE88_RS05270 IPR013822 Signal recognition particle SRP54, helical bundle CFE88_RS05270 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05270 IPR003593 AAA+ ATPase domain CFE88_RS05275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05275 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS05275 IPR036277 SMCs flexible hinge superfamily CFE88_RS05275 IPR024704 Structural maintenance of chromosomes protein CFE88_RS05275 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CFE88_RS05275 IPR010935 SMCs flexible hinge CFE88_RS05280 IPR036389 Ribonuclease III, endonuclease domain superfamily CFE88_RS05280 IPR000999 Ribonuclease III domain CFE88_RS05280 IPR011907 Ribonuclease III CFE88_RS05280 IPR014720 Double-stranded RNA-binding domain CFE88_RS05285 IPR036736 ACP-like superfamily CFE88_RS05285 IPR006162 Phosphopantetheine attachment site CFE88_RS05285 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS05285 IPR003231 Acyl carrier protein (ACP) CFE88_RS05290 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CFE88_RS05290 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS05290 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 IPR036291 NAD(P)-binding domain superfamily CFE88_RS05295 IPR024925 Malonyl CoA-acyl carrier protein transacylase CFE88_RS05295 IPR001227 Acyl transferase domain superfamily CFE88_RS05295 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CFE88_RS05295 IPR014043 Acyl transferase CFE88_RS05295 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CFE88_RS05295 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CFE88_RS05300 IPR003664 Fatty acid synthesis PlsX protein CFE88_RS05300 IPR012281 Phospholipid biosynthesis protein, PlsX-like CFE88_RS05305 IPR029069 HotDog domain superfamily CFE88_RS05305 IPR017275 Transcription factor FapR CFE88_RS05305 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS05310 IPR004609 ATP-dependent DNA helicase RecG CFE88_RS05310 IPR011545 DEAD/DEAH box helicase domain CFE88_RS05310 IPR001650 Helicase, C-terminal CFE88_RS05310 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05310 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05310 IPR033454 RecG, wedge domain CFE88_RS05310 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS05315 IPR019986 DAK2 domain-containing protein YloV CFE88_RS05315 IPR004007 DhaL domain CFE88_RS05315 IPR033470 Uncharacterised protein, DhaK domain CFE88_RS05315 IPR036117 DhaL domain superfamily CFE88_RS05320 IPR005531 Alkaline shock protein Asp23 CFE88_RS05325 IPR037147 Ribosomal protein L28/L24 superfamily CFE88_RS05325 IPR001383 Ribosomal protein L28 CFE88_RS05325 IPR026569 Ribosomal protein L28/L24 CFE88_RS05325 IPR034704 L28p-like CFE88_RS05335 IPR026019 Ribulose-phosphate 3-epimerase CFE88_RS05335 IPR013785 Aldolase-type TIM barrel CFE88_RS05335 IPR011060 Ribulose-phosphate binding barrel CFE88_RS05335 IPR000056 Ribulose-phosphate 3-epimerase-like CFE88_RS05340 IPR004881 Ribosome biogenesis GTPase RsgA CFE88_RS05340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05340 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05340 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CFE88_RS05340 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CFE88_RS05340 IPR010914 RsgA GTPase domain CFE88_RS05345 IPR011009 Protein kinase-like domain superfamily CFE88_RS05345 IPR005543 PASTA domain CFE88_RS05345 IPR008271 Serine/threonine-protein kinase, active site CFE88_RS05345 IPR000719 Protein kinase domain CFE88_RS05345 IPR017441 Protein kinase, ATP binding site CFE88_RS05350 IPR036457 PPM-type phosphatase domain superfamily CFE88_RS05350 IPR015655 Protein phosphatase 2C family CFE88_RS05350 IPR001932 PPM-type phosphatase domain CFE88_RS05355 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CFE88_RS05355 IPR007197 Radical SAM CFE88_RS05355 IPR040072 Methyltransferase (Class A) CFE88_RS05355 IPR013785 Aldolase-type TIM barrel CFE88_RS05355 IPR027492 Dual-specificity RNA methyltransferase RlmN CFE88_RS05360 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CFE88_RS05360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05360 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CFE88_RS05360 IPR035926 NusB-like superfamily CFE88_RS05360 IPR006027 NusB/RsmB/TIM44 CFE88_RS05360 IPR004573 rRNA small subunit methyltransferase B CFE88_RS05360 IPR023267 RNA (C5-cytosine) methyltransferase CFE88_RS05365 IPR036477 Formyl transferase, N-terminal domain superfamily CFE88_RS05365 IPR002376 Formyl transferase, N-terminal CFE88_RS05365 IPR037022 Formyl transferase, C-terminal domain superfamily CFE88_RS05365 IPR005793 Formyl transferase, C-terminal CFE88_RS05365 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CFE88_RS05365 IPR005794 Methionyl-tRNA formyltransferase CFE88_RS05365 IPR011034 Formyl transferase-like, C-terminal domain superfamily CFE88_RS05365 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CFE88_RS05370 IPR023635 Peptide deformylase CFE88_RS05370 IPR036821 Peptide deformylase superfamily CFE88_RS05380 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS05380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05380 IPR005259 Primosomal protein N' CFE88_RS05380 IPR041222 Primosomal protein N', 3' DNA-binding domain CFE88_RS05380 IPR006935 Helicase/UvrB, N-terminal CFE88_RS05380 IPR001650 Helicase, C-terminal CFE88_RS05380 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily CFE88_RS05380 IPR041236 Primosomal protein N, C-terminal domain CFE88_RS05380 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain CFE88_RS05385 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CFE88_RS05385 IPR036551 Flavin prenyltransferase-like CFE88_RS05385 IPR003382 Flavoprotein CFE88_RS05385 IPR035929 CoaB-like superfamily CFE88_RS05385 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CFE88_RS05390 IPR012293 RNA polymerase subunit, RPB6/omega CFE88_RS05390 IPR006110 RNA polymerase, subunit omega/K/RPB6 CFE88_RS05390 IPR036161 RPB6/omega subunit-like superfamily CFE88_RS05390 IPR003716 DNA-directed RNA polymerase, omega subunit CFE88_RS05395 IPR008144 Guanylate kinase-like domain CFE88_RS05395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05395 IPR017665 Guanylate kinase CFE88_RS05395 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CFE88_RS05395 IPR020590 Guanylate kinase, conserved site CFE88_RS05400 IPR008532 NFACT, RNA-binding domain CFE88_RS05415 IPR023031 Orotate phosphoribosyltransferase CFE88_RS05415 IPR004467 Orotate phosphoribosyl transferase domain CFE88_RS05415 IPR029057 Phosphoribosyltransferase-like CFE88_RS05415 IPR000836 Phosphoribosyltransferase domain CFE88_RS05420 IPR014732 Orotidine 5'-phosphate decarboxylase CFE88_RS05420 IPR001754 Orotidine 5'-phosphate decarboxylase domain CFE88_RS05420 IPR013785 Aldolase-type TIM barrel CFE88_RS05420 IPR011060 Ribulose-phosphate binding barrel CFE88_RS05420 IPR018089 Orotidine 5'-phosphate decarboxylase, active site CFE88_RS05425 IPR036914 Methylglyoxal synthase-like domain superfamily CFE88_RS05425 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS05425 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain CFE88_RS05425 IPR011761 ATP-grasp fold CFE88_RS05425 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CFE88_RS05425 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS05425 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CFE88_RS05425 IPR006275 Carbamoyl-phosphate synthase, large subunit CFE88_RS05425 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CFE88_RS05430 IPR017926 Glutamine amidotransferase CFE88_RS05430 IPR029062 Class I glutamine amidotransferase-like CFE88_RS05430 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CFE88_RS05430 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CFE88_RS05430 IPR006274 Carbamoyl-phosphate synthase, small subunit CFE88_RS05430 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CFE88_RS05435 IPR004722 Dihydroorotase CFE88_RS05435 IPR011059 Metal-dependent hydrolase, composite domain superfamily CFE88_RS05435 IPR032466 Metal-dependent hydrolase CFE88_RS05435 IPR002195 Dihydroorotase, conserved site CFE88_RS05435 IPR006680 Amidohydrolase-related CFE88_RS05440 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CFE88_RS05440 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS05440 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS05440 IPR002082 Aspartate carbamoyltransferase CFE88_RS05440 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS05445 IPR029935 Uracil permease CFE88_RS05445 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS05445 IPR006042 Xanthine/uracil permease CFE88_RS05455 IPR000836 Phosphoribosyltransferase domain CFE88_RS05455 IPR029057 Phosphoribosyltransferase-like CFE88_RS05455 IPR023050 Bifunctional protein PyrR CFE88_RS05460 IPR036986 RNA-binding S4 domain superfamily CFE88_RS05460 IPR006225 Pseudouridine synthase, RluC/RluD CFE88_RS05460 IPR006145 Pseudouridine synthase, RsuA/RluA CFE88_RS05460 IPR002942 RNA-binding S4 domain CFE88_RS05460 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CFE88_RS05460 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS05465 IPR001872 Peptidase A8, signal peptidase II CFE88_RS05470 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS05470 IPR018392 LysM domain CFE88_RS05470 IPR036779 LysM domain superfamily CFE88_RS05470 IPR007921 CHAP domain CFE88_RS05480 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS05480 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS05480 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS05480 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain CFE88_RS05480 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS05480 IPR023585 Isoleucine-tRNA ligase, type 1 CFE88_RS05480 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS05480 IPR010663 Zinc finger, FPG/IleRS-type CFE88_RS05480 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05480 IPR002301 Isoleucine-tRNA ligase CFE88_RS05485 IPR007793 DivIVA family CFE88_RS05485 IPR019933 DivIVA domain CFE88_RS05495 IPR003425 CCB3/YggT CFE88_RS05500 IPR023052 Cell division protein SepF CFE88_RS05500 IPR007561 Cell division protein SepF/SepF-related CFE88_RS05500 IPR038594 SepF-like superfamily CFE88_RS05505 IPR001608 Alanine racemase, N-terminal CFE88_RS05505 IPR029066 PLP-binding barrel CFE88_RS05505 IPR011078 Pyridoxal phosphate homeostasis protein CFE88_RS05510 IPR011324 Cytotoxic necrotizing factor-like, catalytic CFE88_RS05510 IPR003730 Multi-copper polyphenol oxidoreductase CFE88_RS05510 IPR038371 Multi-copper polyphenol oxidoreductase superfamily CFE88_RS05515 IPR024757 Cell division protein FtsZ, C-terminal CFE88_RS05515 IPR008280 Tubulin/FtsZ, C-terminal CFE88_RS05515 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CFE88_RS05515 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily CFE88_RS05515 IPR000158 Cell division protein FtsZ CFE88_RS05515 IPR003008 Tubulin/FtsZ, GTPase domain CFE88_RS05515 IPR020805 Cell division protein FtsZ, conserved site CFE88_RS05515 IPR036525 Tubulin/FtsZ, GTPase domain superfamily CFE88_RS05520 IPR003494 SHS2 domain inserted in FtsA CFE88_RS05520 IPR020823 Cell division protein FtsA CFE88_RS05525 IPR005548 Cell division protein FtsQ/DivIB CFE88_RS05525 IPR013685 POTRA domain, FtsQ-type CFE88_RS05525 IPR026580 Cell division protein DivIB CFE88_RS05525 IPR034746 POTRA domain CFE88_RS05530 IPR013221 Mur ligase, central CFE88_RS05530 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS05530 IPR036615 Mur ligase, C-terminal domain superfamily CFE88_RS05530 IPR004101 Mur ligase, C-terminal CFE88_RS05530 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CFE88_RS05535 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CFE88_RS05535 IPR000715 Glycosyl transferase, family 4 CFE88_RS05535 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CFE88_RS05540 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS05540 IPR005543 PASTA domain CFE88_RS05540 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS05540 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CFE88_RS05540 IPR005311 Penicillin-binding protein, dimerisation domain CFE88_RS05545 IPR007060 Septum formation initiator FtsL/DivIC CFE88_RS05545 IPR011922 Cell division protein FtsL CFE88_RS05550 IPR002903 Ribosomal RNA small subunit methyltransferase H CFE88_RS05550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05550 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily CFE88_RS05555 IPR003444 Transcriptional regulator MraZ CFE88_RS05555 IPR035644 MraZ, C-terminal CFE88_RS05555 IPR020603 MraZ domain CFE88_RS05555 IPR035642 MraZ, N-terminal CFE88_RS05555 IPR038619 MraZ superfamily CFE88_RS05555 IPR007159 SpoVT-AbrB domain CFE88_RS05555 IPR037914 SpoVT-AbrB domain superfamily CFE88_RS05560 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS05565 IPR017274 Putative N-acetyltransferase YlbP CFE88_RS05565 IPR000182 GNAT domain CFE88_RS05565 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS05570 IPR036412 HAD-like superfamily CFE88_RS05570 IPR006439 HAD hydrolase, subfamily IA CFE88_RS05570 IPR023214 HAD superfamily CFE88_RS05570 IPR041492 Haloacid dehalogenase-like hydrolase CFE88_RS05570 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CFE88_RS05570 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB CFE88_RS05575 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05580 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05605 IPR020922 dITP/XTP pyrophosphatase CFE88_RS05605 IPR002637 Ham1-like protein CFE88_RS05605 IPR029001 Inosine triphosphate pyrophosphatase-like CFE88_RS05610 IPR018187 Asp/Glu racemase, active site 1 CFE88_RS05610 IPR015942 Asp/Glu/hydantoin racemase CFE88_RS05610 IPR001920 Asp/Glu racemase CFE88_RS05610 IPR033134 Asp/Glu racemase, active site 2 CFE88_RS05610 IPR004391 Glutamate racemase CFE88_RS05615 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CFE88_RS05615 IPR009051 Alpha-helical ferredoxin CFE88_RS05615 IPR036010 2Fe-2S ferredoxin-like superfamily CFE88_RS05615 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS05615 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CFE88_RS05615 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS05615 IPR012675 Beta-grasp domain superfamily CFE88_RS05620 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS05620 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria CFE88_RS05620 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CFE88_RS05620 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CFE88_RS05620 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CFE88_RS05620 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CFE88_RS05620 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CFE88_RS05625 IPR011138 Succinate dehydrogenase cytochrome b558 subunit CFE88_RS05625 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CFE88_RS05625 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CFE88_RS05625 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute CFE88_RS05635 IPR010994 RuvA domain 2-like CFE88_RS05635 IPR000305 GIY-YIG endonuclease CFE88_RS05635 IPR038476 UvrC homology region 2 superfamily CFE88_RS05635 IPR001162 UvrC family homology region CFE88_RS05635 IPR004791 UvrABC system, subunit C CFE88_RS05635 IPR036876 UVR domain superfamily CFE88_RS05635 IPR001943 UVR domain CFE88_RS05635 IPR035901 GIY-YIG endonuclease superfamily CFE88_RS05640 IPR036249 Thioredoxin-like superfamily CFE88_RS05640 IPR013766 Thioredoxin domain CFE88_RS05640 IPR005746 Thioredoxin CFE88_RS05640 IPR017937 Thioredoxin, conserved site CFE88_RS05645 IPR005747 Endonuclease MutS2 CFE88_RS05645 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CFE88_RS05645 IPR007696 DNA mismatch repair protein MutS, core CFE88_RS05645 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS05645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05645 IPR002625 Smr domain CFE88_RS05645 IPR036063 Smr domain superfamily CFE88_RS05650 IPR010996 DNA polymerase beta-like, N-terminal domain CFE88_RS05650 IPR037160 DNA polymerase, thumb domain superfamily CFE88_RS05650 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05650 IPR016195 Polymerase/histidinol phosphatase-like CFE88_RS05650 IPR002054 DNA-directed DNA polymerase X CFE88_RS05650 IPR029398 DNA polymerase beta, thumb domain CFE88_RS05650 IPR022311 Uncharacterised conserved protein UCP005047, YshC CFE88_RS05650 IPR004013 PHP domain CFE88_RS05650 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS05650 IPR027421 DNA polymerase lambda lyase domain superfamily CFE88_RS05660 IPR007838 Cell division protein ZapA-like CFE88_RS05660 IPR036192 Cell division protein ZapA-like superfamily CFE88_RS05660 IPR023688 Cell division protein ZapA, firmicutes CFE88_RS05665 IPR004641 Ribonuclease HIII CFE88_RS05665 IPR001352 Ribonuclease HII/HIII CFE88_RS05665 IPR024567 Ribonuclease HII/HIII domain CFE88_RS05665 IPR012295 TBP domain superfamily CFE88_RS05665 IPR012337 Ribonuclease H-like superfamily CFE88_RS05665 IPR036397 Ribonuclease H superfamily CFE88_RS05665 IPR024568 Ribonuclease HIII, N-terminal CFE88_RS05670 IPR005146 B3/B4 tRNA-binding domain CFE88_RS05670 IPR009061 Putative DNA-binding domain superfamily CFE88_RS05670 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS05670 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CFE88_RS05670 IPR005147 tRNA synthetase, B5-domain CFE88_RS05670 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CFE88_RS05670 IPR002547 tRNA-binding domain CFE88_RS05670 IPR005121 Ferrodoxin-fold anticodon-binding domain CFE88_RS05670 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CFE88_RS05670 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05670 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CFE88_RS05675 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CFE88_RS05675 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS05675 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CFE88_RS05675 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CFE88_RS05675 IPR002319 Phenylalanyl-tRNA synthetase CFE88_RS05675 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CFE88_RS05680 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05680 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05680 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS05680 IPR029064 50S ribosomal protein L30e-like CFE88_RS05680 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CFE88_RS05690 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS05690 IPR031477 E domain CFE88_RS05690 IPR019931 LPXTG cell wall anchor domain CFE88_RS05690 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS05690 IPR011098 G5 domain CFE88_RS05695 IPR011332 Zinc-binding ribosomal protein CFE88_RS05695 IPR002677 Ribosomal protein L32p CFE88_RS05710 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05710 IPR008513 tRNA(Met) cytidine acetate ligase CFE88_RS05715 IPR004821 Cytidyltransferase-like domain CFE88_RS05715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05715 IPR001980 Phosphopantetheine adenylyltransferase CFE88_RS05720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05720 IPR004398 RNA methyltransferase, RsmD CFE88_RS05730 IPR016979 Protein of unknown function DUF2129 CFE88_RS05740 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CFE88_RS05740 IPR030395 Glycerophosphodiester phosphodiesterase domain CFE88_RS05745 IPR023378 YheA/YmcA-like domain superfamily CFE88_RS05745 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS05750 IPR029410 CAP-associated domain CFE88_RS05750 IPR014044 CAP domain CFE88_RS05750 IPR035940 CAP superfamily CFE88_RS05760 IPR000537 UbiA prenyltransferase family CFE88_RS05760 IPR006369 Protohaem IX farnesyltransferase CFE88_RS05765 IPR023755 Heme A synthase, type 1 CFE88_RS05765 IPR003780 COX15/CtaA family CFE88_RS05770 IPR011053 Single hybrid motif CFE88_RS05770 IPR000891 Pyruvate carboxyltransferase CFE88_RS05770 IPR011761 ATP-grasp fold CFE88_RS05770 IPR005481 Biotin carboxylase-like, N-terminal domain CFE88_RS05770 IPR013785 Aldolase-type TIM barrel CFE88_RS05770 IPR011054 Rudiment single hybrid motif CFE88_RS05770 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS05770 IPR005482 Biotin carboxylase, C-terminal CFE88_RS05770 IPR000089 Biotin/lipoyl attachment CFE88_RS05770 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS05770 IPR003379 Carboxylase, conserved domain CFE88_RS05770 IPR005930 Pyruvate carboxylase CFE88_RS05770 IPR011764 Biotin carboxylation domain CFE88_RS05775 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CFE88_RS05775 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CFE88_RS05780 IPR036270 UPF0358 superfamily CFE88_RS05780 IPR009983 Uncharacterised protein family UPF0358 CFE88_RS05790 IPR019241 Protein of unknown function DUF2197 CFE88_RS05795 IPR035651 BipA, domain V CFE88_RS05795 IPR041095 Elongation Factor G, domain II CFE88_RS05795 IPR031157 Tr-type G domain, conserved site CFE88_RS05795 IPR000640 Elongation factor EFG, domain V-like CFE88_RS05795 IPR004161 Translation elongation factor EFTu-like, domain 2 CFE88_RS05795 IPR005225 Small GTP-binding protein domain CFE88_RS05795 IPR000795 Transcription factor, GTP-binding domain CFE88_RS05795 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS05795 IPR042116 GTP-binding protein TypA/BipA, C-terminal CFE88_RS05795 IPR006298 GTP-binding protein TypA CFE88_RS05795 IPR035647 EF-G domain III/V-like CFE88_RS05795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05805 IPR020550 Inositol monophosphatase, conserved site CFE88_RS05805 IPR000760 Inositol monophosphatase-like CFE88_RS05805 IPR020583 Inositol monophosphatase, metal-binding site CFE88_RS05810 IPR009403 Protein of unknown function UPF0637 CFE88_RS05815 IPR001046 NRAMP family CFE88_RS05830 IPR006059 Bacterial extracellular solute-binding protein CFE88_RS05830 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein CFE88_RS05840 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS05840 IPR035906 MetI-like superfamily CFE88_RS05845 IPR003439 ABC transporter-like CFE88_RS05845 IPR013611 Transport-associated OB, type 2 CFE88_RS05845 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit CFE88_RS05845 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05845 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA CFE88_RS05845 IPR003593 AAA+ ATPase domain CFE88_RS05845 IPR017871 ABC transporter, conserved site CFE88_RS05845 IPR008995 Molybdate/tungstate binding, C-terminal CFE88_RS05855 IPR023324 BH2638-like superfamily CFE88_RS05855 IPR007920 Protein of unknown function UPF0223 CFE88_RS05860 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS05860 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS05860 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CFE88_RS05860 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS05860 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS05860 IPR023753 FAD/NAD(P)-binding domain CFE88_RS05860 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS05865 IPR036625 E3-binding domain superfamily CFE88_RS05865 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CFE88_RS05865 IPR000089 Biotin/lipoyl attachment CFE88_RS05865 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS05865 IPR011053 Single hybrid motif CFE88_RS05865 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS05865 IPR004167 Peripheral subunit-binding domain CFE88_RS05870 IPR033248 Transketolase, C-terminal domain CFE88_RS05870 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS05870 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CFE88_RS05870 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05875 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha CFE88_RS05875 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05875 IPR001017 Dehydrogenase, E1 component CFE88_RS05885 IPR036821 Peptide deformylase superfamily CFE88_RS05885 IPR023635 Peptide deformylase CFE88_RS05900 IPR009907 Protein of unknown function DUF1447 CFE88_RS05905 IPR001279 Metallo-beta-lactamase CFE88_RS05905 IPR041636 Ribonuclease J, C-terminal CFE88_RS05905 IPR004613 Ribonuclease J CFE88_RS05905 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CFE88_RS05905 IPR001587 Ribonuclease J, conserved site CFE88_RS05905 IPR030854 Ribonuclease J, bacteria CFE88_RS05905 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS05905 IPR042173 Ribonuclease J, domain 2 CFE88_RS05910 IPR003148 Regulator of K+ conductance, N-terminal CFE88_RS05910 IPR006037 Regulator of K+ conductance, C-terminal CFE88_RS05910 IPR036291 NAD(P)-binding domain superfamily CFE88_RS05910 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CFE88_RS05915 IPR003317 Cytochrome ubiquinol oxidase subunit 2 CFE88_RS05920 IPR002585 Cytochrome ubiquinol oxidase subunit 1 CFE88_RS05930 IPR018274 PEP-utilising enzyme, active site CFE88_RS05930 IPR000121 PEP-utilising enzyme, C-terminal CFE88_RS05930 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS05930 IPR023151 PEP-utilising enzyme, conserved site CFE88_RS05930 IPR036637 Phosphohistidine domain superfamily CFE88_RS05930 IPR006318 Phosphotransferase system, enzyme I-like CFE88_RS05930 IPR036618 PtsI, HPr-binding domain superfamily CFE88_RS05930 IPR008731 Phosphotransferase system, enzyme I N-terminal CFE88_RS05930 IPR024692 Phosphotransferase system, enzyme I CFE88_RS05930 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CFE88_RS05930 IPR040442 Pyruvate kinase-like domain superfamily CFE88_RS05935 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CFE88_RS05935 IPR035895 HPr-like superfamily CFE88_RS05935 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CFE88_RS05935 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05945 IPR019614 S-adenosylmethionine-dependent methyltransferase CFE88_RS05945 IPR041532 RlmI, PUA-like domain CFE88_RS05945 IPR002478 PUA domain CFE88_RS05945 IPR036974 PUA domain superfamily CFE88_RS05945 IPR015947 PUA-like superfamily CFE88_RS05960 IPR010354 Oleate hydratase CFE88_RS05960 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS05970 IPR003593 AAA+ ATPase domain CFE88_RS05970 IPR003439 ABC transporter-like CFE88_RS05970 IPR017871 ABC transporter, conserved site CFE88_RS05970 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05975 IPR024919 ECF transporter transmembrane protein EcfT CFE88_RS05975 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS05980 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily CFE88_RS05980 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS05980 IPR020560 Phosphoribosylglycinamide synthetase, C-domain CFE88_RS05980 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05980 IPR000115 Phosphoribosylglycinamide synthetase CFE88_RS05980 IPR011761 ATP-grasp fold CFE88_RS05980 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal CFE88_RS05980 IPR020559 Phosphoribosylglycinamide synthetase, conserved site CFE88_RS05980 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFE88_RS05980 IPR011054 Rudiment single hybrid motif CFE88_RS05985 IPR024051 AICAR transformylase, duplicated domain superfamily CFE88_RS05985 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05985 IPR016193 Cytidine deaminase-like CFE88_RS05985 IPR002695 Bifunctional purine biosynthesis protein PurH-like CFE88_RS05985 IPR036914 Methylglyoxal synthase-like domain superfamily CFE88_RS05990 IPR004607 Phosphoribosylglycinamide formyltransferase CFE88_RS05990 IPR002376 Formyl transferase, N-terminal CFE88_RS05990 IPR036477 Formyl transferase, N-terminal domain superfamily CFE88_RS05995 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase CFE88_RS05995 IPR010918 PurM-like, C-terminal domain CFE88_RS05995 IPR036676 PurM-like, C-terminal domain superfamily CFE88_RS05995 IPR016188 PurM-like, N-terminal domain CFE88_RS05995 IPR036921 PurM-like, N-terminal domain superfamily CFE88_RS06000 IPR035584 Amidophosphoribosyltransferase, N-terminal CFE88_RS06000 IPR029057 Phosphoribosyltransferase-like CFE88_RS06000 IPR005854 Amidophosphoribosyltransferase CFE88_RS06000 IPR000836 Phosphoribosyltransferase domain CFE88_RS06000 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS06000 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS06005 IPR036921 PurM-like, N-terminal domain superfamily CFE88_RS06005 IPR010074 Phosphoribosylformylglycinamidine subunit PurL CFE88_RS06005 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain CFE88_RS06005 IPR010918 PurM-like, C-terminal domain CFE88_RS06005 IPR036676 PurM-like, C-terminal domain superfamily CFE88_RS06005 IPR016188 PurM-like, N-terminal domain CFE88_RS06010 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ CFE88_RS06010 IPR029062 Class I glutamine amidotransferase-like CFE88_RS06010 IPR017926 Glutamine amidotransferase CFE88_RS06015 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily CFE88_RS06015 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS CFE88_RS06020 IPR018236 SAICAR synthetase, conserved site CFE88_RS06020 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase CFE88_RS06020 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase CFE88_RS06020 IPR028923 SAICAR synthetase/ADE2, N-terminal CFE88_RS06025 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CFE88_RS06025 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS06025 IPR016185 Pre-ATP-grasp domain superfamily CFE88_RS06025 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit CFE88_RS06025 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain CFE88_RS06025 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS06025 IPR011761 ATP-grasp fold CFE88_RS06025 IPR011054 Rudiment single hybrid motif CFE88_RS06030 IPR033747 Class I PurE CFE88_RS06030 IPR000031 PurE domain CFE88_RS06030 IPR035893 PurE domain superfamily CFE88_RS06030 IPR024694 PurE, prokaryotic type CFE88_RS06035 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CFE88_RS06035 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFE88_RS06035 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFE88_RS06035 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06045 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily CFE88_RS06045 IPR008972 Cupredoxin CFE88_RS06045 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain CFE88_RS06045 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CFE88_RS06045 IPR006332 Quinol oxidase subunit II CFE88_RS06045 IPR002429 Cytochrome c oxidase subunit II-like C-terminal CFE88_RS06050 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CFE88_RS06050 IPR000883 Cytochrome c oxidase subunit I CFE88_RS06050 IPR023616 Cytochrome c oxidase-like, subunit I domain CFE88_RS06050 IPR014233 Quinol oxidase subunit I CFE88_RS06050 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CFE88_RS06055 IPR033946 Ubiquinol oxidase subunit III domain CFE88_RS06055 IPR000298 Cytochrome c oxidase subunit III-like CFE88_RS06055 IPR035973 Cytochrome c oxidase subunit III-like superfamily CFE88_RS06055 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CFE88_RS06055 IPR014246 Quinol oxidase subunit III CFE88_RS06055 IPR024791 Cytochrome c oxidase subunit III CFE88_RS06060 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes CFE88_RS06060 IPR014250 Quinol oxidase subunit IV CFE88_RS06065 IPR023186 Inosine/uridine-preferring nucleoside hydrolase CFE88_RS06065 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS06065 IPR036452 Ribonucleoside hydrolase-like CFE88_RS06065 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site CFE88_RS06065 IPR022976 Non-specific ribonucleoside hydrolase RihC CFE88_RS06070 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS06070 IPR001466 Beta-lactamase-related CFE88_RS06075 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS06080 IPR024469 Protein of unknown function DUF2538 CFE88_RS06085 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CFE88_RS06085 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06085 IPR000182 GNAT domain CFE88_RS06090 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS06090 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CFE88_RS06090 IPR025987 GW domain CFE88_RS06090 IPR038200 GW domain superfamily CFE88_RS06090 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS06095 IPR000835 MarR-type HTH domain CFE88_RS06095 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS06095 IPR023071 Transcriptional regulator, SlyA CFE88_RS06095 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS06095 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS06100 IPR002656 Acyltransferase 3 CFE88_RS06105 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS06105 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CFE88_RS06105 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS06105 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06105 IPR004839 Aminotransferase, class I/classII CFE88_RS06110 IPR036515 Transposase IS200-like superfamily CFE88_RS06110 IPR002686 Transposase IS200-like CFE88_RS06120 IPR001753 Enoyl-CoA hydratase/isomerase CFE88_RS06120 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS06120 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB CFE88_RS06120 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CFE88_RS06120 IPR014748 Enoyl-CoA hydratase, C-terminal CFE88_RS06125 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06125 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS06125 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase CFE88_RS06130 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS06130 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS06130 IPR029061 Thiamin diphosphate-binding fold CFE88_RS06130 IPR032264 Menaquinone biosynthesis protein MenD, middle domain CFE88_RS06130 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase CFE88_RS06135 IPR034681 Isochorismate synthase MenF CFE88_RS06135 IPR005801 ADC synthase CFE88_RS06135 IPR004561 Isochorismate synthase CFE88_RS06135 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS06145 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase CFE88_RS06145 IPR026046 UbiA prenyltransferase domain containing protein 1 CFE88_RS06145 IPR000537 UbiA prenyltransferase family CFE88_RS06155 IPR000182 GNAT domain CFE88_RS06155 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06165 IPR007829 TM2 domain CFE88_RS06180 IPR001123 Amino acid exporter protein, LeuE-type CFE88_RS06195 IPR001668 Plasmid recombination enzyme CFE88_RS06200 IPR001668 Plasmid recombination enzyme CFE88_RS06205 IPR001668 Plasmid recombination enzyme CFE88_RS06230 IPR019491 Lipoate protein ligase, C-terminal CFE88_RS06230 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CFE88_RS06230 IPR004562 Lipoyltransferase/lipoate-protein ligase CFE88_RS06235 IPR018690 Protein of unknown function DUF2187 CFE88_RS06245 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06245 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CFE88_RS06245 IPR006146 5'-Nucleotidase, conserved site CFE88_RS06245 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS06245 IPR006179 5'-Nucleotidase/apyrase CFE88_RS06245 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CFE88_RS06250 IPR003445 Cation transporter CFE88_RS06255 IPR009003 Peptidase S1, PA clan CFE88_RS06255 IPR001940 Peptidase S1C CFE88_RS06255 IPR036034 PDZ superfamily CFE88_RS06255 IPR001478 PDZ domain CFE88_RS06260 IPR005496 Integral membrane protein TerC CFE88_RS06260 IPR036259 MFS transporter superfamily CFE88_RS06260 IPR022493 Integral membrane YkoY CFE88_RS06265 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CFE88_RS06265 IPR004548 Peptide chain release factor 3 CFE88_RS06265 IPR005225 Small GTP-binding protein domain CFE88_RS06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06265 IPR031157 Tr-type G domain, conserved site CFE88_RS06265 IPR000795 Transcription factor, GTP-binding domain CFE88_RS06265 IPR004161 Translation elongation factor EFTu-like, domain 2 CFE88_RS06265 IPR035647 EF-G domain III/V-like CFE88_RS06265 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS06265 IPR032090 Peptide chain release factor 3, C-terminal CFE88_RS06265 IPR041732 Peptide chain release factor 3, GTP-binding domain CFE88_RS06275 IPR013221 Mur ligase, central CFE88_RS06275 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS06275 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CFE88_RS06275 IPR035911 MurE/MurF, N-terminal CFE88_RS06275 IPR004101 Mur ligase, C-terminal CFE88_RS06275 IPR000713 Mur ligase, N-terminal catalytic domain CFE88_RS06275 IPR036615 Mur ligase, C-terminal domain superfamily CFE88_RS06280 IPR007235 Glycosyl transferase, family 28, C-terminal CFE88_RS06280 IPR023589 Processive diacylglycerol beta-glucosyltransferase CFE88_RS06280 IPR009695 Diacylglycerol glucosyltransferase, N-terminal CFE88_RS06285 IPR011701 Major facilitator superfamily CFE88_RS06285 IPR020846 Major facilitator superfamily domain CFE88_RS06285 IPR036259 MFS transporter superfamily CFE88_RS06290 IPR022932 Putative phosphoesterase YjcG CFE88_RS06290 IPR009097 Cyclic phosphodiesterase CFE88_RS06295 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06295 IPR000801 Putative esterase CFE88_RS06300 IPR002549 Transmembrane protein TqsA-like CFE88_RS06305 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS06305 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06305 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS06415 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS06415 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS06415 IPR002577 Helix-turn-helix, HxlR type CFE88_RS06420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06420 IPR004602 UvrABC system subunit A CFE88_RS06420 IPR041552 UvrA DNA-binding domain CFE88_RS06420 IPR041102 UvrA, interaction domain CFE88_RS06420 IPR003593 AAA+ ATPase domain CFE88_RS06420 IPR003439 ABC transporter-like CFE88_RS06420 IPR003439 ABC transporter-like CFE88_RS06420 IPR017871 ABC transporter, conserved site CFE88_RS06420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06420 IPR004602 UvrABC system subunit A CFE88_RS06420 IPR041552 UvrA DNA-binding domain CFE88_RS06420 IPR041102 UvrA, interaction domain CFE88_RS06420 IPR003593 AAA+ ATPase domain CFE88_RS06420 IPR017871 ABC transporter, conserved site CFE88_RS06430 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06430 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06430 IPR019796 Glucose-6-phosphate dehydrogenase, active site CFE88_RS06430 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06430 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06435 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06435 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06435 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06435 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06435 IPR019796 Glucose-6-phosphate dehydrogenase, active site CFE88_RS06440 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06440 IPR019796 Glucose-6-phosphate dehydrogenase, active site CFE88_RS06440 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06440 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06440 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06445 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06445 IPR019796 Glucose-6-phosphate dehydrogenase, active site CFE88_RS06445 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06445 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06445 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06495 IPR027797 Pre-toxin TG domain CFE88_RS06505 IPR006728 Protein of unknown function DUF600 CFE88_RS06505 IPR036170 Probable antitoxin YezG superfamily CFE88_RS06520 IPR038770 Sodium/solute symporter superfamily CFE88_RS06520 IPR003148 Regulator of K+ conductance, N-terminal CFE88_RS06520 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CFE88_RS06520 IPR006037 Regulator of K+ conductance, C-terminal CFE88_RS06520 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06520 IPR006153 Cation/H+ exchanger CFE88_RS06525 IPR006669 Magnesium transporter MgtE CFE88_RS06525 IPR038048 Magnesium transporter MgtE, transmembrane domain CFE88_RS06525 IPR038076 MgtE, N-terminal domain superfamily CFE88_RS06525 IPR006668 Magnesium transporter, MgtE intracellular domain CFE88_RS06525 IPR000644 CBS domain CFE88_RS06525 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily CFE88_RS06525 IPR006667 SLC41 divalent cation transporters, integral membrane domain CFE88_RS06530 IPR020103 Pseudouridine synthase, catalytic domain superfamily CFE88_RS06530 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CFE88_RS06530 IPR006145 Pseudouridine synthase, RsuA/RluA CFE88_RS06530 IPR002942 RNA-binding S4 domain CFE88_RS06530 IPR006225 Pseudouridine synthase, RluC/RluD CFE88_RS06535 IPR002504 NAD kinase CFE88_RS06535 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CFE88_RS06535 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CFE88_RS06535 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CFE88_RS06540 IPR007685 RelA/SpoT CFE88_RS06545 IPR020908 Uncharacterised protein family UPF0738 CFE88_RS06555 IPR001486 Truncated hemoglobin CFE88_RS06555 IPR019795 Globin, bacterial-like, conserved site CFE88_RS06555 IPR012292 Globin/Protoglobin CFE88_RS06555 IPR009050 Globin-like superfamily CFE88_RS06560 IPR036249 Thioredoxin-like superfamily CFE88_RS06565 IPR036515 Transposase IS200-like superfamily CFE88_RS06565 IPR002686 Transposase IS200-like CFE88_RS06570 IPR036515 Transposase IS200-like superfamily CFE88_RS06570 IPR002686 Transposase IS200-like CFE88_RS06575 IPR004438 Peptidase M3B, oligoendopeptidase F CFE88_RS06575 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS06575 IPR042088 Oligoendopeptidase F, C-terminal domain CFE88_RS06575 IPR001567 Peptidase M3A/M3B catalytic domain CFE88_RS06585 IPR038471 MecA, C-terminal domain superfamily CFE88_RS06585 IPR008681 Negative regulator of genetic competence, MecA CFE88_RS06590 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS06590 IPR023731 Regulatory protein Spx CFE88_RS06590 IPR006660 Arsenate reductase-like CFE88_RS06590 IPR036249 Thioredoxin-like superfamily CFE88_RS06595 IPR002305 Aminoacyl-tRNA synthetase, class Ic CFE88_RS06595 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06595 IPR002306 Tryptophan-tRNA ligase CFE88_RS06595 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS06595 IPR024109 Tryptophan-tRNA ligase, bacterial-type CFE88_RS06600 IPR030678 Peptide/nickel binding protein, MppA-type CFE88_RS06600 IPR000914 Solute-binding protein family 5 domain CFE88_RS06600 IPR039424 Solute-binding protein family 5 CFE88_RS06600 IPR023765 Solute-binding protein family 5, conserved site CFE88_RS06605 IPR003593 AAA+ ATPase domain CFE88_RS06605 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06605 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CFE88_RS06605 IPR003439 ABC transporter-like CFE88_RS06605 IPR017871 ABC transporter, conserved site CFE88_RS06610 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06610 IPR017871 ABC transporter, conserved site CFE88_RS06610 IPR003439 ABC transporter-like CFE88_RS06610 IPR003593 AAA+ ATPase domain CFE88_RS06610 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CFE88_RS06615 IPR035906 MetI-like superfamily CFE88_RS06615 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS06615 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS06620 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS06620 IPR035906 MetI-like superfamily CFE88_RS06630 IPR018201 Beta-ketoacyl synthase, active site CFE88_RS06630 IPR000794 Beta-ketoacyl synthase CFE88_RS06630 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CFE88_RS06630 IPR014030 Beta-ketoacyl synthase, N-terminal CFE88_RS06630 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CFE88_RS06630 IPR016039 Thiolase-like CFE88_RS06630 IPR014031 Beta-ketoacyl synthase, C-terminal CFE88_RS06635 IPR016039 Thiolase-like CFE88_RS06635 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CFE88_RS06635 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CFE88_RS06635 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFE88_RS06645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06645 IPR003593 AAA+ ATPase domain CFE88_RS06645 IPR017730 Chaperonin ClpB CFE88_RS06645 IPR019489 Clp ATPase, C-terminal CFE88_RS06645 IPR036628 Clp, N-terminal domain superfamily CFE88_RS06645 IPR004176 Clp, N-terminal CFE88_RS06645 IPR018368 ClpA/B, conserved site 1 CFE88_RS06645 IPR028299 ClpA/B, conserved site 2 CFE88_RS06645 IPR041546 ClpA/ClpB, AAA lid domain CFE88_RS06645 IPR003959 ATPase, AAA-type, core CFE88_RS06645 IPR001270 ClpA/B family CFE88_RS06650 IPR036514 SGNH hydrolase superfamily CFE88_RS06650 IPR002656 Acyltransferase 3 CFE88_RS06655 IPR002744 MIP18 family-like CFE88_RS06655 IPR034904 Fe-S cluster assembly domain superfamily CFE88_RS06660 IPR000150 Cof family CFE88_RS06660 IPR036412 HAD-like superfamily CFE88_RS06660 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS06660 IPR023214 HAD superfamily CFE88_RS06665 IPR017758 Coenzyme A disulphide reductase CFE88_RS06665 IPR023536 Coenzyme A disulphide reductase, staphyolococci CFE88_RS06665 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS06665 IPR023753 FAD/NAD(P)-binding domain CFE88_RS06665 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS06665 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS06670 IPR010899 Protein of unknown function UPF0344 CFE88_RS06675 IPR011234 Fumarylacetoacetase-like, C-terminal CFE88_RS06675 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily CFE88_RS06680 IPR000212 DNA helicase, UvrD/REP type CFE88_RS06680 IPR014152 DNA helicase subunit AddA CFE88_RS06680 IPR034739 UvrD/AddA helicase, N-terminal CFE88_RS06680 IPR014016 UvrD-like helicase, ATP-binding domain CFE88_RS06680 IPR011335 Restriction endonuclease type II-like CFE88_RS06680 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CFE88_RS06680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06680 IPR011604 Exonuclease, phage-type/RecB, C-terminal CFE88_RS06680 IPR014017 UvrD-like DNA helicase, C-terminal CFE88_RS06685 IPR000212 DNA helicase, UvrD/REP type CFE88_RS06685 IPR014140 DNA helicase subunit AddB CFE88_RS06685 IPR014017 UvrD-like DNA helicase, C-terminal CFE88_RS06685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06685 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CFE88_RS06685 IPR014016 UvrD-like helicase, ATP-binding domain CFE88_RS06690 IPR019758 Peptidase S26A, signal peptidase I, conserved site CFE88_RS06690 IPR036286 LexA/Signal peptidase-like superfamily CFE88_RS06690 IPR019756 Peptidase S26A, signal peptidase I, serine active site CFE88_RS06690 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS06690 IPR019533 Peptidase S26 CFE88_RS06690 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CFE88_RS06695 IPR019533 Peptidase S26 CFE88_RS06695 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS06695 IPR036286 LexA/Signal peptidase-like superfamily CFE88_RS06700 IPR015414 Transmembrane protein TMEM64 CFE88_RS06700 IPR032816 SNARE associated Golgi protein CFE88_RS06710 IPR035482 Phosphoglucose isomerase, SIS domain 2 CFE88_RS06710 IPR035476 Phosphoglucose isomerase, SIS domain 1 CFE88_RS06710 IPR018189 Phosphoglucose isomerase, conserved site CFE88_RS06710 IPR001672 Phosphoglucose isomerase (PGI) CFE88_RS06715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06715 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CFE88_RS06715 IPR023434 Argininosuccinate synthase, type 1 subfamily CFE88_RS06715 IPR018223 Argininosuccinate synthase, conserved site CFE88_RS06715 IPR001518 Argininosuccinate synthase CFE88_RS06720 IPR029419 Argininosuccinate lyase, C-terminal CFE88_RS06720 IPR009049 Argininosuccinate lyase CFE88_RS06720 IPR024083 Fumarase/histidase, N-terminal CFE88_RS06720 IPR020557 Fumarate lyase, conserved site CFE88_RS06720 IPR000362 Fumarate lyase family CFE88_RS06720 IPR022761 Fumarate lyase, N-terminal CFE88_RS06720 IPR008948 L-Aspartase-like CFE88_RS06725 IPR030395 Glycerophosphodiester phosphodiesterase domain CFE88_RS06725 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CFE88_RS06730 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06730 IPR033524 Leu/Phe/Val dehydrogenases active site CFE88_RS06730 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CFE88_RS06730 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CFE88_RS06730 IPR033922 NAD(P) binding domain of glutamate dehydrogenase CFE88_RS06730 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CFE88_RS06730 IPR014362 Glutamate dehydrogenase CFE88_RS06735 IPR005814 Aminotransferase class-III CFE88_RS06735 IPR010164 Ornithine aminotransferase CFE88_RS06735 IPR034757 Ornithine aminotransferase, bacterial type CFE88_RS06735 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06735 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS06735 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS06740 IPR013785 Aldolase-type TIM barrel CFE88_RS06740 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CFE88_RS06745 IPR022967 RNA-binding domain, S1 CFE88_RS06745 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS06745 IPR003029 S1 domain CFE88_RS06750 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CFE88_RS06750 IPR029000 Cyclophilin-like domain superfamily CFE88_RS06750 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CFE88_RS06750 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CFE88_RS06760 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CFE88_RS06760 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup CFE88_RS06760 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CFE88_RS06760 IPR005663 Monovalent cation proton antiporter subunit A CFE88_RS06760 IPR025383 Domain of unknown function DUF4040 CFE88_RS06765 IPR005281 Monovalent cation:proton antiporter, subunit B CFE88_RS06765 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS06770 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CFE88_RS06770 IPR006673 Mnh complex subunit C1 CFE88_RS06775 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CFE88_RS06775 IPR003918 NADH:ubiquinone oxidoreductase CFE88_RS06780 IPR002758 Na+/H+ antiporter subunit E CFE88_RS06785 IPR007208 Na(+)/H(+) antiporter subunit F-like CFE88_RS06790 IPR005133 Na+/H+ antiporter subunit G CFE88_RS06800 IPR029069 HotDog domain superfamily CFE88_RS06800 IPR003736 Phenylacetic acid degradation-related domain CFE88_RS06800 IPR006683 Thioesterase domain CFE88_RS06805 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CFE88_RS06805 IPR032813 Putative Na+/H+ antiporter, N-terminal CFE88_RS06810 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal CFE88_RS06810 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B CFE88_RS06810 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal CFE88_RS06810 IPR023042 Peptidase M17, leucine aminopeptidase CFE88_RS06815 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS06815 IPR023753 FAD/NAD(P)-binding domain CFE88_RS06820 IPR035903 HesB-like domain superfamily CFE88_RS06820 IPR000361 FeS cluster biogenesis CFE88_RS06820 IPR017870 FeS cluster insertion, C-terminal, conserved site CFE88_RS06820 IPR016092 FeS cluster insertion protein CFE88_RS06825 IPR022916 Protein of unknown function UPF0349 CFE88_RS06825 IPR009910 Protein of unknown function DUF1450 CFE88_RS06830 IPR023753 FAD/NAD(P)-binding domain CFE88_RS06830 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS06835 IPR009190 Protein of unknown function DUF1462 CFE88_RS06835 IPR038218 YuzD-like superfamily CFE88_RS06835 IPR036249 Thioredoxin-like superfamily CFE88_RS06840 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal CFE88_RS06840 IPR034904 Fe-S cluster assembly domain superfamily CFE88_RS06845 IPR006998 DltD CFE88_RS06845 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes CFE88_RS06850 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS06850 IPR036736 ACP-like superfamily CFE88_RS06850 IPR003230 D-alanyl carrier protein CFE88_RS06855 IPR004299 Membrane bound O-acyl transferase, MBOAT CFE88_RS06855 IPR024024 D-alanyl transfer protein DltB CFE88_RS06855 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CFE88_RS06860 IPR000873 AMP-dependent synthetase/ligase CFE88_RS06860 IPR042099 AMP-dependent synthetase-like superfamily CFE88_RS06860 IPR010071 Amino acid adenylation domain CFE88_RS06860 IPR010072 D-alanine--D-alanyl carrier protein ligase CFE88_RS06860 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS06870 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS06870 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS06870 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS06870 IPR036291 NAD(P)-binding domain superfamily CFE88_RS06870 IPR023756 Glyoxylate/hydroxypyruvate reductase B CFE88_RS06875 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 CFE88_RS06875 IPR006357 HAD-superfamily hydrolase, subfamily IIA CFE88_RS06875 IPR036412 HAD-like superfamily CFE88_RS06875 IPR023214 HAD superfamily CFE88_RS06880 IPR037038 Bsu32300-like superfamily CFE88_RS06880 IPR008201 Protein of unknown function DUF86 CFE88_RS06895 IPR038141 YutD-like superfamily CFE88_RS06895 IPR009370 Protein of unknown function DUF1027 CFE88_RS06900 IPR007197 Radical SAM CFE88_RS06900 IPR003698 Lipoyl synthase CFE88_RS06900 IPR031691 Lipoyl synthase, N-terminal CFE88_RS06900 IPR006638 Elp3/MiaB/NifB CFE88_RS06900 IPR013785 Aldolase-type TIM barrel CFE88_RS06905 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06905 IPR011240 Phosphoesterase-related protein YunD CFE88_RS06905 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS06905 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CFE88_RS06905 IPR006179 5'-Nucleotidase/apyrase CFE88_RS06910 IPR002781 Transmembrane protein TauE-like CFE88_RS06915 IPR002763 Protein of unknown function DUF72 CFE88_RS06915 IPR036520 UPF0759 superfamily CFE88_RS06930 IPR016169 FAD-binding, type PCMH, subdomain 2 CFE88_RS06930 IPR005170 Transporter-associated domain CFE88_RS06930 IPR036318 FAD-binding, type PCMH-like superfamily CFE88_RS06930 IPR002550 CNNM, transmembrane domain CFE88_RS06930 IPR000644 CBS domain CFE88_RS06940 IPR000825 SUF system FeS cluster assembly, SufBD CFE88_RS06940 IPR010231 SUF system FeS cluster assembly, SufB CFE88_RS06940 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CFE88_RS06945 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal CFE88_RS06950 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06950 IPR000192 Aminotransferase class V domain CFE88_RS06950 IPR010970 Cysteine desulfurase, SufS CFE88_RS06950 IPR016454 Cysteine desulfurase CFE88_RS06950 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS06950 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS06955 IPR011542 SUF system FeS cluster assembly, SufD CFE88_RS06955 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CFE88_RS06955 IPR000825 SUF system FeS cluster assembly, SufBD CFE88_RS06960 IPR010230 FeS cluster assembly SUF system, ATPase SufC CFE88_RS06960 IPR017871 ABC transporter, conserved site CFE88_RS06960 IPR003593 AAA+ ATPase domain CFE88_RS06960 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06960 IPR003439 ABC transporter-like CFE88_RS06970 IPR036629 YjbJ superfamily CFE88_RS06970 IPR008462 CsbD-like domain CFE88_RS06980 IPR004872 Lipoprotein NlpA family CFE88_RS06985 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS06985 IPR035906 MetI-like superfamily CFE88_RS06990 IPR003593 AAA+ ATPase domain CFE88_RS06990 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06990 IPR018449 NIL domain CFE88_RS06990 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CFE88_RS06990 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CFE88_RS06990 IPR017871 ABC transporter, conserved site CFE88_RS06990 IPR003439 ABC transporter-like CFE88_RS07000 IPR034141 Ribonuclease M5-like, TOPRIM domain CFE88_RS07000 IPR006171 TOPRIM domain CFE88_RS07010 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS07010 IPR000089 Biotin/lipoyl attachment CFE88_RS07010 IPR002930 Glycine cleavage system H-protein CFE88_RS07010 IPR033753 Glycine cleavage system H-protein/Simiate CFE88_RS07010 IPR017453 Glycine cleavage system H-protein, subgroup CFE88_RS07010 IPR011053 Single hybrid motif CFE88_RS07015 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS07015 IPR036249 Thioredoxin-like superfamily CFE88_RS07015 IPR006660 Arsenate reductase-like CFE88_RS07020 IPR005746 Thioredoxin CFE88_RS07020 IPR036249 Thioredoxin-like superfamily CFE88_RS07020 IPR013766 Thioredoxin domain CFE88_RS07030 IPR013785 Aldolase-type TIM barrel CFE88_RS07030 IPR001381 3-dehydroquinate dehydratase type I CFE88_RS07035 IPR036102 OsmC/Ohr superfamily CFE88_RS07035 IPR003718 OsmC/Ohr family CFE88_RS07035 IPR019953 Organic hydroperoxide resistance protein famiy CFE88_RS07035 IPR015946 K homology domain-like, alpha/beta CFE88_RS07050 IPR023086 Phosphoglycerate mutase, GpmB, probable CFE88_RS07050 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CFE88_RS07050 IPR029033 Histidine phosphatase superfamily CFE88_RS07050 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS07085 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS07085 IPR038128 Poly-gamma-glutamate hydrolase superfamily CFE88_RS07100 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07100 IPR011129 Cold shock domain CFE88_RS07100 IPR012156 Cold shock, CspA CFE88_RS07100 IPR002059 Cold-shock protein, DNA-binding CFE88_RS07100 IPR019844 Cold-shock (CSD) domain CFE88_RS07105 IPR027469 Cation efflux transmembrane domain superfamily CFE88_RS07105 IPR002524 Cation efflux protein CFE88_RS07105 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS07105 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CFE88_RS07135 IPR004772 TrkH potassium transport family CFE88_RS07135 IPR003445 Cation transporter CFE88_RS07175 IPR018925 Phage terminase small subunit CFE88_RS07175 IPR038713 Terminase small subunit, N-terminal domain superfamily CFE88_RS07175 IPR005335 Terminase small subunit CFE88_RS07240 IPR002104 Integrase, catalytic domain CFE88_RS07240 IPR022000 Min27-like integrase, DNA-binding domain CFE88_RS07240 IPR013762 Integrase-like, catalytic domain superfamily CFE88_RS07240 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS07240 IPR010998 Integrase/recombinase, N-terminal CFE88_RS07250 IPR023620 Small protein B CFE88_RS07250 IPR020081 SsrA-binding protein, conserved site CFE88_RS07250 IPR000037 SsrA-binding protein CFE88_RS07255 IPR011805 Ribonuclease R CFE88_RS07255 IPR011129 Cold shock domain CFE88_RS07255 IPR040476 RNase II/RNase R, cold shock domain CFE88_RS07255 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 IPR004476 Ribonuclease II/ribonuclease R CFE88_RS07255 IPR013223 Ribonuclease B, N-terminal OB domain CFE88_RS07255 IPR001900 Ribonuclease II/R CFE88_RS07255 IPR022966 Ribonuclease II/R, conserved site CFE88_RS07255 IPR003029 S1 domain CFE88_RS07255 IPR022967 RNA-binding domain, S1 CFE88_RS07260 IPR022742 Serine aminopeptidase, S33 CFE88_RS07260 IPR012354 Esterase/lipase CFE88_RS07260 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07265 IPR004692 Preprotein translocase SecG subunit CFE88_RS07275 IPR020810 Enolase, C-terminal TIM barrel domain CFE88_RS07275 IPR020809 Enolase, conserved site CFE88_RS07275 IPR000941 Enolase CFE88_RS07275 IPR036849 Enolase-like, C-terminal domain superfamily CFE88_RS07275 IPR020811 Enolase, N-terminal CFE88_RS07275 IPR029017 Enolase-like, N-terminal CFE88_RS07280 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent CFE88_RS07280 IPR017850 Alkaline-phosphatase-like, core domain superfamily CFE88_RS07280 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily CFE88_RS07280 IPR006124 Metalloenzyme CFE88_RS07280 IPR011258 BPG-independent PGAM, N-terminal CFE88_RS07285 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CFE88_RS07285 IPR013785 Aldolase-type TIM barrel CFE88_RS07285 IPR020861 Triosephosphate isomerase, active site CFE88_RS07285 IPR035990 Triosephosphate isomerase superfamily CFE88_RS07285 IPR000652 Triosephosphate isomerase CFE88_RS07290 IPR036043 Phosphoglycerate kinase superfamily CFE88_RS07290 IPR015824 Phosphoglycerate kinase, N-terminal CFE88_RS07290 IPR001576 Phosphoglycerate kinase CFE88_RS07295 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CFE88_RS07295 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CFE88_RS07295 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CFE88_RS07295 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CFE88_RS07295 IPR036291 NAD(P)-binding domain superfamily CFE88_RS07295 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CFE88_RS07300 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07300 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07300 IPR037171 NagB/RpiA transferase-like CFE88_RS07300 IPR007324 Sugar-binding domain, putative CFE88_RS07315 IPR010099 Epimerase family protein SDR39U1 CFE88_RS07315 IPR001509 NAD-dependent epimerase/dehydratase CFE88_RS07315 IPR036291 NAD(P)-binding domain superfamily CFE88_RS07315 IPR013549 Domain of unknown function DUF1731 CFE88_RS07330 IPR033135 ClpP, histidine active site CFE88_RS07330 IPR001907 ATP-dependent Clp protease proteolytic subunit CFE88_RS07330 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CFE88_RS07330 IPR029045 ClpP/crotonase-like domain superfamily CFE88_RS07330 IPR018215 ClpP, Ser active site CFE88_RS07340 IPR003802 Sporulation regulator WhiA CFE88_RS07340 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CFE88_RS07340 IPR039518 WhiA, LAGLIDADG-like domain CFE88_RS07340 IPR027434 Homing endonuclease CFE88_RS07340 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07340 IPR023054 Sporulation regulator WhiA, C-terminal CFE88_RS07345 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CFE88_RS07345 IPR010119 Gluconeogenesis factor CFE88_RS07345 IPR038136 Gluconeogenesis factor superfamily CFE88_RS07350 IPR005337 RapZ-like family CFE88_RS07350 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07355 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS07355 IPR023753 FAD/NAD(P)-binding domain CFE88_RS07355 IPR005982 Thioredoxin reductase CFE88_RS07355 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CFE88_RS07365 IPR001451 Hexapeptide repeat CFE88_RS07365 IPR018357 Hexapeptide transferase, conserved site CFE88_RS07365 IPR011004 Trimeric LpxA-like superfamily CFE88_RS07370 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt CFE88_RS07375 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CFE88_RS07375 IPR011104 HPr kinase/phosphorylase, C-terminal CFE88_RS07375 IPR003755 HPr(Ser) kinase/phosphorylase CFE88_RS07375 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CFE88_RS07380 IPR017871 ABC transporter, conserved site CFE88_RS07380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07380 IPR041102 UvrA, interaction domain CFE88_RS07380 IPR004602 UvrABC system subunit A CFE88_RS07380 IPR041552 UvrA DNA-binding domain CFE88_RS07380 IPR003439 ABC transporter-like CFE88_RS07385 IPR004807 UvrABC system, subunit B CFE88_RS07385 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07385 IPR041471 UvrB, interaction domain CFE88_RS07385 IPR024759 UvrB, YAD/RRR-motif-containing domain CFE88_RS07385 IPR001943 UVR domain CFE88_RS07385 IPR001650 Helicase, C-terminal CFE88_RS07385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07385 IPR006935 Helicase/UvrB, N-terminal CFE88_RS07385 IPR036876 UVR domain superfamily CFE88_RS07405 IPR036779 LysM domain superfamily CFE88_RS07405 IPR018392 LysM domain CFE88_RS07405 IPR007921 CHAP domain CFE88_RS07405 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS07410 IPR004374 Peptide chain release factor 2 CFE88_RS07410 IPR000352 Peptide chain release factor class I CFE88_RS07410 IPR005139 Peptide chain release factor CFE88_RS07415 IPR000352 Peptide chain release factor class I CFE88_RS07415 IPR005139 Peptide chain release factor CFE88_RS07415 IPR004374 Peptide chain release factor 2 CFE88_RS07420 IPR036266 SecA, Wing/Scaffold superfamily CFE88_RS07420 IPR011116 SecA Wing/Scaffold CFE88_RS07420 IPR004027 SEC-C motif CFE88_RS07420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07420 IPR020937 SecA conserved site CFE88_RS07420 IPR011115 SecA DEAD-like, N-terminal CFE88_RS07420 IPR036670 SecA, preprotein cross-linking domain superfamily CFE88_RS07420 IPR011130 SecA, preprotein cross-linking domain CFE88_RS07420 IPR014018 SecA motor DEAD CFE88_RS07420 IPR000185 Protein translocase subunit SecA CFE88_RS07425 IPR003489 Ribosome hibernation promoting factor/RaiA CFE88_RS07425 IPR036567 Ribosome hibernation promotion factor-like CFE88_RS07425 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CFE88_RS07425 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily CFE88_RS07425 IPR034694 Ribosome hibernation promoting factor, long/plastid CFE88_RS07430 IPR029057 Phosphoribosyltransferase-like CFE88_RS07430 IPR005222 Competence protein ComF CFE88_RS07430 IPR000836 Phosphoribosyltransferase domain CFE88_RS07435 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07435 IPR001650 Helicase, C-terminal CFE88_RS07435 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07435 IPR006935 Helicase/UvrB, N-terminal CFE88_RS07440 IPR003797 DegV CFE88_RS07445 IPR001498 Impact, N-terminal CFE88_RS07445 IPR035647 EF-G domain III/V-like CFE88_RS07445 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS07445 IPR036956 Impact, N-terminal domain superfamily CFE88_RS07445 IPR015796 Impact family, bacterial/archaeal CFE88_RS07445 IPR023582 Impact family CFE88_RS07445 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CFE88_RS07445 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CFE88_RS07450 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CFE88_RS07450 IPR000715 Glycosyl transferase, family 4 CFE88_RS07455 IPR000160 GGDEF domain CFE88_RS07455 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CFE88_RS07455 IPR029787 Nucleotide cyclase CFE88_RS07470 IPR011650 Peptidase M20, dimerisation domain CFE88_RS07470 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS07470 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS07470 IPR002933 Peptidase M20 CFE88_RS07470 IPR010161 Peptidase M20B, tripeptide aminopeptidase CFE88_RS07475 IPR018197 Glycerate kinase, restriction-enzyme-like fold CFE88_RS07475 IPR036129 Glycerate kinase superfamily CFE88_RS07475 IPR018193 Glycerate kinase, flavodoxin-like fold CFE88_RS07475 IPR004381 Glycerate kinase CFE88_RS07495 IPR016166 FAD-binding domain, PCMH-type CFE88_RS07495 IPR036318 FAD-binding, type PCMH-like superfamily CFE88_RS07495 IPR016167 FAD-binding, type PCMH, subdomain 1 CFE88_RS07495 IPR016169 FAD-binding, type PCMH, subdomain 2 CFE88_RS07495 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CFE88_RS07495 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CFE88_RS07495 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily CFE88_RS07495 IPR006094 FAD linked oxidase, N-terminal CFE88_RS07510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07510 IPR017871 ABC transporter, conserved site CFE88_RS07510 IPR003439 ABC transporter-like CFE88_RS07510 IPR003593 AAA+ ATPase domain CFE88_RS07515 IPR037294 ABC transporter, BtuC-like CFE88_RS07515 IPR000522 ABC transporter, permease protein, BtuC-like CFE88_RS07520 IPR037294 ABC transporter, BtuC-like CFE88_RS07520 IPR000522 ABC transporter, permease protein, BtuC-like CFE88_RS07530 IPR026494 Ribonucleoside reductase subunit beta, NrdF CFE88_RS07530 IPR000358 Ribonucleotide reductase small subunit family CFE88_RS07530 IPR030475 Ribonucleotide reductase small subunit, acitve site CFE88_RS07530 IPR033909 Ribonucleotide reductase small subunit CFE88_RS07530 IPR012348 Ribonucleotide reductase-like CFE88_RS07530 IPR009078 Ferritin-like superfamily CFE88_RS07535 IPR039718 Ribonucleoside-diphosphate reductase large subunit CFE88_RS07535 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CFE88_RS07535 IPR013554 Ribonucleotide reductase N-terminal CFE88_RS07535 IPR013509 Ribonucleotide reductase large subunit, N-terminal CFE88_RS07535 IPR000788 Ribonucleotide reductase large subunit, C-terminal CFE88_RS07535 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE CFE88_RS07535 IPR013346 Ribonucleotide reductase, class I , alpha subunit CFE88_RS07540 IPR004465 Ribonucleotide reductase Class Ib, NrdI CFE88_RS07540 IPR029039 Flavoprotein-like superfamily CFE88_RS07540 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial CFE88_RS07550 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF CFE88_RS07550 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 CFE88_RS07555 IPR005279 Dipeptide/tripeptide permease CFE88_RS07555 IPR020846 Major facilitator superfamily domain CFE88_RS07555 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CFE88_RS07555 IPR000109 Proton-dependent oligopeptide transporter family CFE88_RS07555 IPR036259 MFS transporter superfamily CFE88_RS07560 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CFE88_RS07560 IPR001206 Diacylglycerol kinase, catalytic domain CFE88_RS07560 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CFE88_RS07560 IPR005218 Diacylglycerol/lipid kinase CFE88_RS07565 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain CFE88_RS07565 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CFE88_RS07565 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CFE88_RS07565 IPR039697 Iron-type alcohol dehydrogenase-like CFE88_RS07565 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS07565 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS07565 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS07565 IPR015590 Aldehyde dehydrogenase domain CFE88_RS07565 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase CFE88_RS07570 IPR036412 HAD-like superfamily CFE88_RS07570 IPR023214 HAD superfamily CFE88_RS07570 IPR010708 5'(3')-deoxyribonucleotidase CFE88_RS07580 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS07580 IPR035906 MetI-like superfamily CFE88_RS07585 IPR003439 ABC transporter-like CFE88_RS07585 IPR017871 ABC transporter, conserved site CFE88_RS07585 IPR000644 CBS domain CFE88_RS07585 IPR005892 Glycine betaine transport ATP-binding subunit CFE88_RS07585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07585 IPR003593 AAA+ ATPase domain CFE88_RS07590 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07590 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07590 IPR018982 RQC domain CFE88_RS07590 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CFE88_RS07590 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07590 IPR002121 HRDC domain CFE88_RS07590 IPR001650 Helicase, C-terminal CFE88_RS07590 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07590 IPR010997 HRDC-like superfamily CFE88_RS07590 IPR004589 DNA helicase, ATP-dependent, RecQ type CFE88_RS07590 IPR011545 DEAD/DEAH box helicase domain CFE88_RS07590 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial CFE88_RS07595 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07595 IPR003593 AAA+ ATPase domain CFE88_RS07595 IPR032524 ABC transporter Uup, C-terminal CFE88_RS07595 IPR032781 ABC-transporter extension domain CFE88_RS07595 IPR003439 ABC transporter-like CFE88_RS07595 IPR017871 ABC transporter, conserved site CFE88_RS07595 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CFE88_RS07600 IPR003689 Zinc/iron permease CFE88_RS07610 IPR000917 Sulfatase, N-terminal CFE88_RS07610 IPR012160 Lipoteichoic acid synthase-like CFE88_RS07610 IPR017850 Alkaline-phosphatase-like, core domain superfamily CFE88_RS07620 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS07620 IPR029000 Cyclophilin-like domain superfamily CFE88_RS07620 IPR010016 KipI family CFE88_RS07635 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS07635 IPR006805 Anthranilate synthase component I, N-terminal CFE88_RS07635 IPR005801 ADC synthase CFE88_RS07635 IPR019999 Anthranilate synthase component I-like CFE88_RS07640 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CFE88_RS07640 IPR017926 Glutamine amidotransferase CFE88_RS07640 IPR029062 Class I glutamine amidotransferase-like CFE88_RS07645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS07645 IPR018317 Queuosine biosynthesis protein QueC CFE88_RS07650 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family CFE88_RS07650 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily CFE88_RS07655 IPR024924 7-carboxy-7-deazaguanine synthase-like CFE88_RS07655 IPR007197 Radical SAM CFE88_RS07655 IPR017742 7-carboxy-7-deazaguanine synthase CFE88_RS07655 IPR013785 Aldolase-type TIM barrel CFE88_RS07680 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS07680 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS07680 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS07680 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07680 IPR011006 CheY-like superfamily CFE88_RS07685 IPR005467 Histidine kinase domain CFE88_RS07685 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS07685 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS07685 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS07685 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS07685 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS07690 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS07690 IPR001173 Glycosyltransferase 2-like CFE88_RS07695 IPR018170 Aldo/keto reductase, conserved site CFE88_RS07695 IPR036812 NADP-dependent oxidoreductase domain superfamily CFE88_RS07695 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS07695 IPR020471 Aldo/keto reductase CFE88_RS07700 IPR036318 FAD-binding, type PCMH-like superfamily CFE88_RS07700 IPR005170 Transporter-associated domain CFE88_RS07700 IPR002550 CNNM, transmembrane domain CFE88_RS07700 IPR016169 FAD-binding, type PCMH, subdomain 2 CFE88_RS07700 IPR000644 CBS domain CFE88_RS07705 IPR032466 Metal-dependent hydrolase CFE88_RS07705 IPR011059 Metal-dependent hydrolase, composite domain superfamily CFE88_RS07705 IPR003764 N-acetylglucosamine-6-phosphate deacetylase CFE88_RS07705 IPR006680 Amidohydrolase-related CFE88_RS07710 IPR012337 Ribonuclease H-like superfamily CFE88_RS07710 IPR036397 Ribonuclease H superfamily CFE88_RS07710 IPR032874 DDE domain CFE88_RS07710 IPR001584 Integrase, catalytic core CFE88_RS07715 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07715 IPR002577 Helix-turn-helix, HxlR type CFE88_RS07715 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07720 IPR031477 E domain CFE88_RS07720 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS07720 IPR019931 LPXTG cell wall anchor domain CFE88_RS07720 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS07720 IPR031477 E domain CFE88_RS07720 IPR011098 G5 domain CFE88_RS07720 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS07720 IPR019931 LPXTG cell wall anchor domain CFE88_RS07720 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS07720 IPR011098 G5 domain CFE88_RS07730 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CFE88_RS07730 IPR036095 PTS system IIB component-like superfamily CFE88_RS07730 IPR002178 PTS EIIA type-2 domain CFE88_RS07730 IPR016152 Phosphotransferase/anion transporter CFE88_RS07730 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS07730 IPR006327 Phosphotransferase system, fructose IIC component CFE88_RS07730 IPR004715 Phosphotransferase system, IIA component fructose subfamily CFE88_RS07730 IPR013011 Phosphotransferase system, EIIB component, type 2 CFE88_RS07730 IPR013014 Phosphotransferase system, EIIC component, type 2 CFE88_RS07735 IPR017583 Tagatose/fructose phosphokinase CFE88_RS07735 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS07735 IPR011611 Carbohydrate kinase PfkB CFE88_RS07735 IPR022463 Fructose 1-phosphate kinase CFE88_RS07735 IPR029056 Ribokinase-like CFE88_RS07740 IPR037171 NagB/RpiA transferase-like CFE88_RS07740 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CFE88_RS07740 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07740 IPR014036 DeoR C-terminal sensor domain CFE88_RS07740 IPR001034 DeoR-type HTH domain CFE88_RS07750 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CFE88_RS07750 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CFE88_RS07750 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CFE88_RS07760 IPR011701 Major facilitator superfamily CFE88_RS07760 IPR020846 Major facilitator superfamily domain CFE88_RS07760 IPR036259 MFS transporter superfamily CFE88_RS07760 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CFE88_RS07760 IPR004734 Multidrug resistance protein CFE88_RS07775 IPR002081 Cryptochrome/DNA photolyase class 1 CFE88_RS07775 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain CFE88_RS07775 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CFE88_RS07775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS07775 IPR006050 DNA photolyase, N-terminal CFE88_RS07775 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily CFE88_RS07775 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily CFE88_RS07780 IPR030676 Citrate carrier CitT-related CFE88_RS07780 IPR001898 Solute carrier family 13 CFE88_RS07785 IPR001236 Lactate/malate dehydrogenase, N-terminal CFE88_RS07785 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CFE88_RS07785 IPR011275 Malate dehydrogenase, type 3 CFE88_RS07785 IPR036291 NAD(P)-binding domain superfamily CFE88_RS07785 IPR022383 Lactate/malate dehydrogenase, C-terminal CFE88_RS07785 IPR001557 L-lactate/malate dehydrogenase CFE88_RS07795 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS07795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07795 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07805 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07805 IPR000835 MarR-type HTH domain CFE88_RS07805 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS07805 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07810 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC CFE88_RS07810 IPR003439 ABC transporter-like CFE88_RS07810 IPR036640 ABC transporter type 1, transmembrane domain superfamily CFE88_RS07810 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS07810 IPR003593 AAA+ ATPase domain CFE88_RS07810 IPR017871 ABC transporter, conserved site CFE88_RS07810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07815 IPR003593 AAA+ ATPase domain CFE88_RS07815 IPR039421 Type I protein exporter CFE88_RS07815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07815 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD CFE88_RS07815 IPR017871 ABC transporter, conserved site CFE88_RS07815 IPR003439 ABC transporter-like CFE88_RS07815 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS07815 IPR036640 ABC transporter type 1, transmembrane domain superfamily CFE88_RS07820 IPR003824 Undecaprenyl-diphosphatase UppP CFE88_RS07835 IPR003791 Protein of unknown function UPF0178 CFE88_RS07840 IPR031100 LOG family CFE88_RS07840 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CFE88_RS07865 IPR007403 Protein of unknown function DUF456 CFE88_RS07870 IPR011701 Major facilitator superfamily CFE88_RS07870 IPR020846 Major facilitator superfamily domain CFE88_RS07870 IPR004750 Sugar efflux CFE88_RS07870 IPR036259 MFS transporter superfamily CFE88_RS07875 IPR000847 Transcription regulator HTH, LysR CFE88_RS07875 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07875 IPR005119 LysR, substrate-binding CFE88_RS07875 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07890 IPR023950 Flavohemoprotein CFE88_RS07890 IPR012292 Globin/Protoglobin CFE88_RS07890 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS07890 IPR000971 Globin CFE88_RS07890 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CFE88_RS07890 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CFE88_RS07890 IPR017927 FAD-binding domain, ferredoxin reductase-type CFE88_RS07890 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain CFE88_RS07890 IPR001433 Oxidoreductase FAD/NAD(P)-binding CFE88_RS07890 IPR009050 Globin-like superfamily CFE88_RS07895 IPR038062 ScdA-like, N-terminal domain superfamily CFE88_RS07895 IPR012312 Haemerythrin-like CFE88_RS07895 IPR019903 Repair of iron centres family CFE88_RS07895 IPR023551 Iron-sulfur cluster repair protein ScdA CFE88_RS07905 IPR026562 Probable transcriptional regulatory protein YeeN CFE88_RS07905 IPR026564 Transcriptional regulator TACO1-like, domain 3 CFE88_RS07905 IPR029072 YebC-like CFE88_RS07905 IPR002876 Transcriptional regulator TACO1-like CFE88_RS07905 IPR017856 Integrase-like, N-terminal CFE88_RS07910 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07910 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS07910 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS07925 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS07925 IPR007921 CHAP domain CFE88_RS07925 IPR018392 LysM domain CFE88_RS07925 IPR036779 LysM domain superfamily CFE88_RS07930 IPR001204 Phosphate transporter CFE88_RS07935 IPR018445 Putative phosphate transport regulator CFE88_RS07935 IPR038078 PhoU-like domain superfamily CFE88_RS07940 IPR027022 ABC transporter permease protein, BceB-type CFE88_RS07940 IPR003838 ABC transporter permease protein domain CFE88_RS07945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07945 IPR003439 ABC transporter-like CFE88_RS07945 IPR003593 AAA+ ATPase domain CFE88_RS07950 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS07950 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS07950 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS07950 IPR005467 Histidine kinase domain CFE88_RS07955 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS07955 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS07955 IPR011006 CheY-like superfamily CFE88_RS07955 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS07955 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS07955 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS07960 IPR001509 NAD-dependent epimerase/dehydratase CFE88_RS07960 IPR036291 NAD(P)-binding domain superfamily CFE88_RS07975 IPR038728 Uncharacterized membrane protein YkvI CFE88_RS07985 IPR003593 AAA+ ATPase domain CFE88_RS07985 IPR017871 ABC transporter, conserved site CFE88_RS07985 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07985 IPR003439 ABC transporter-like CFE88_RS07990 IPR003740 Uncharacterised membrane protein YitT CFE88_RS07990 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS07990 IPR019264 Domain of unknown function DUF2179 CFE88_RS07995 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CFE88_RS07995 IPR002668 Concentrative nucleoside transporter N-terminal domain CFE88_RS07995 IPR011657 Concentrative nucleoside transporter C-terminal domain CFE88_RS07995 IPR008276 Concentrative nucleoside transporter CFE88_RS08000 IPR039421 Type I protein exporter CFE88_RS08000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08000 IPR036640 ABC transporter type 1, transmembrane domain superfamily CFE88_RS08000 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS08000 IPR003593 AAA+ ATPase domain CFE88_RS08000 IPR017871 ABC transporter, conserved site CFE88_RS08000 IPR003439 ABC transporter-like CFE88_RS08005 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08005 IPR006409 Glycerol-3-phosphate cytidylyltransferase CFE88_RS08005 IPR004821 Cytidyltransferase-like domain CFE88_RS08010 IPR001173 Glycosyltransferase 2-like CFE88_RS08010 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08015 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS08020 IPR000412 ABC-2 transporter CFE88_RS08020 IPR013525 ABC-2 type transporter CFE88_RS08025 IPR003439 ABC transporter-like CFE88_RS08025 IPR017871 ABC transporter, conserved site CFE88_RS08025 IPR003593 AAA+ ATPase domain CFE88_RS08025 IPR015860 ABC transporter, teichoic acids export, TagH CFE88_RS08025 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08030 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase CFE88_RS08030 IPR004629 Glycosyl transferase WecB/TagA/CpsF CFE88_RS08040 IPR040767 Diphteria toxin repressor, SH3 domain CFE88_RS08040 IPR007167 Ferrous iron transporter FeoA domain CFE88_RS08040 IPR001367 Iron dependent repressor, metal binding and dimerisation domain CFE88_RS08040 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily CFE88_RS08040 IPR038157 Ferrous iron transporter, core domain CFE88_RS08040 IPR022687 DTXR-type HTH domain CFE88_RS08040 IPR022689 Iron dependent repressor CFE88_RS08040 IPR008988 Transcriptional repressor, C-terminal CFE88_RS08040 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS08040 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS08045 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08045 IPR003593 AAA+ ATPase domain CFE88_RS08045 IPR003439 ABC transporter-like CFE88_RS08045 IPR017871 ABC transporter, conserved site CFE88_RS08050 IPR001626 ABC transporter, TroCD-like CFE88_RS08050 IPR037294 ABC transporter, BtuC-like CFE88_RS08055 IPR006127 Periplasmic solute binding protein, ZnuA-like CFE88_RS08055 IPR006129 Adhesin B CFE88_RS08055 IPR006128 Adhesion lipoprotein CFE88_RS08060 IPR002014 VHS domain CFE88_RS08060 IPR018422 Cation/H+ exchanger, CPA1 family CFE88_RS08060 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria CFE88_RS08060 IPR006153 Cation/H+ exchanger CFE88_RS08065 IPR005133 Na+/H+ antiporter subunit G CFE88_RS08070 IPR007208 Na(+)/H(+) antiporter subunit F-like CFE88_RS08075 IPR002758 Na+/H+ antiporter subunit E CFE88_RS08080 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CFE88_RS08080 IPR003918 NADH:ubiquinone oxidoreductase CFE88_RS08085 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CFE88_RS08090 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS08095 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CFE88_RS08095 IPR025383 Domain of unknown function DUF4040 CFE88_RS08095 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CFE88_RS08130 IPR010166 Transcriptional regulator SarA/Rot CFE88_RS08130 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS08130 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS08135 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08135 IPR026968 3-oxoadipate enol-lactonase 1/2 CFE88_RS08135 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08155 IPR036412 HAD-like superfamily CFE88_RS08155 IPR037512 Phosphoglycolate phosphatase, prokaryotic CFE88_RS08155 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic CFE88_RS08155 IPR006439 HAD hydrolase, subfamily IA CFE88_RS08155 IPR041492 Haloacid dehalogenase-like hydrolase CFE88_RS08155 IPR023214 HAD superfamily CFE88_RS08155 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CFE88_RS08160 IPR000522 ABC transporter, permease protein, BtuC-like CFE88_RS08160 IPR037294 ABC transporter, BtuC-like CFE88_RS08165 IPR002491 ABC transporter periplasmic binding domain CFE88_RS08175 IPR009061 Putative DNA-binding domain superfamily CFE88_RS08175 IPR000551 MerR-type HTH domain CFE88_RS08175 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CFE88_RS08175 IPR012925 TipAS antibiotic-recognition domain CFE88_RS08180 IPR005759 Endonuclease III CFE88_RS08180 IPR003265 HhH-GPD domain CFE88_RS08180 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CFE88_RS08180 IPR000445 Helix-hairpin-helix motif CFE88_RS08180 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS08180 IPR011257 DNA glycosylase CFE88_RS08180 IPR004036 Endonuclease III-like, conserved site-2 CFE88_RS08180 IPR004035 Endonuclease III, iron-sulphur binding site CFE88_RS08185 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08185 IPR001278 Arginine-tRNA ligase CFE88_RS08185 IPR005148 Arginyl tRNA synthetase N-terminal domain CFE88_RS08185 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily CFE88_RS08185 IPR035684 Arginyl-tRNA synthetase, catalytic core domain CFE88_RS08185 IPR008909 DALR anticodon binding CFE88_RS08185 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08185 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS08205 IPR020843 Polyketide synthase, enoylreductase domain CFE88_RS08205 IPR011032 GroES-like superfamily CFE88_RS08205 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS08205 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS08205 IPR036291 NAD(P)-binding domain superfamily CFE88_RS08205 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS08205 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS08210 IPR018657 LarA-like, N-terminal CFE88_RS08215 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE CFE88_RS08215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08215 IPR022310 NAD/GMP synthase CFE88_RS08220 IPR035893 PurE domain superfamily CFE88_RS08220 IPR000031 PurE domain CFE88_RS08220 IPR039476 Pyridinium-3,5-biscarboxylic acid mononucleotide synthase CFE88_RS08225 IPR002822 Nickel insertion protein CFE88_RS08230 IPR014852 Uncharacterised protein YwhD CFE88_RS08235 IPR006674 HD domain CFE88_RS08235 IPR003607 HD/PDEase domain CFE88_RS08245 IPR036397 Ribonuclease H superfamily CFE88_RS08245 IPR032874 DDE domain CFE88_RS08245 IPR001584 Integrase, catalytic core CFE88_RS08245 IPR012337 Ribonuclease H-like superfamily CFE88_RS08255 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS08260 IPR004869 Membrane transport protein MMPL domain CFE88_RS08260 IPR000731 Sterol-sensing domain CFE88_RS08265 IPR020471 Aldo/keto reductase CFE88_RS08265 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS08265 IPR036812 NADP-dependent oxidoreductase domain superfamily CFE88_RS08265 IPR018170 Aldo/keto reductase, conserved site CFE88_RS08275 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS08275 IPR023753 FAD/NAD(P)-binding domain CFE88_RS08275 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS08275 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS08275 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS08275 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CFE88_RS08280 IPR009910 Protein of unknown function DUF1450 CFE88_RS08280 IPR020880 Protein of unknown function UPF0741 CFE88_RS08285 IPR005917 Phosphomevalonate kinase, bacteria CFE88_RS08285 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08285 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08285 IPR036554 GHMP kinase, C-terminal domain superfamily CFE88_RS08285 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08285 IPR035102 Phosphomevalonate kinase CFE88_RS08285 IPR006204 GHMP kinase N-terminal domain CFE88_RS08295 IPR006203 GHMP kinase, ATP-binding, conserved site CFE88_RS08295 IPR006204 GHMP kinase N-terminal domain CFE88_RS08295 IPR036554 GHMP kinase, C-terminal domain superfamily CFE88_RS08295 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08295 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08295 IPR000870 Homoserine kinase CFE88_RS08300 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CFE88_RS08300 IPR024897 Octanoyltransferase LipL CFE88_RS08305 IPR042112 Phosphate acetyltransferase, domain 2 CFE88_RS08305 IPR002505 Phosphate acetyl/butaryl transferase CFE88_RS08305 IPR042113 Phosphate acetyltransferase, domain 1 CFE88_RS08305 IPR012147 Phosphate acetyl/butyryltransferase CFE88_RS08305 IPR004614 Phosphate acetyltransferase CFE88_RS08310 IPR011008 Dimeric alpha-beta barrel CFE88_RS08310 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase CFE88_RS08310 IPR031332 Putative heme-dependent peroxidase, UPF0447 family CFE88_RS08325 IPR002293 Amino acid/polyamine transporter I CFE88_RS08325 IPR004758 Amino acid transporter CFE88_RS08330 IPR006696 Protein of unknown function DUF423 CFE88_RS08340 IPR036895 Uracil-DNA glycosylase-like domain superfamily CFE88_RS08340 IPR005122 Uracil-DNA glycosylase-like CFE88_RS08340 IPR002043 Uracil-DNA glycosylase family 1 CFE88_RS08340 IPR018085 Uracil-DNA glycosylase, active site CFE88_RS08350 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CFE88_RS08350 IPR029056 Ribokinase-like CFE88_RS08350 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CFE88_RS08355 IPR035374 Protein VraX CFE88_RS08360 IPR005829 Sugar transporter, conserved site CFE88_RS08360 IPR020846 Major facilitator superfamily domain CFE88_RS08360 IPR036259 MFS transporter superfamily CFE88_RS08360 IPR011701 Major facilitator superfamily CFE88_RS08370 IPR016994 Uncharacterised conserved protein UCP032370, VraC CFE88_RS08375 IPR016039 Thiolase-like CFE88_RS08375 IPR020613 Thiolase, conserved site CFE88_RS08375 IPR020616 Thiolase, N-terminal CFE88_RS08375 IPR002155 Thiolase CFE88_RS08375 IPR020617 Thiolase, C-terminal CFE88_RS08380 IPR020845 AMP-binding, conserved site CFE88_RS08380 IPR042099 AMP-dependent synthetase-like superfamily CFE88_RS08380 IPR000873 AMP-dependent synthetase/ligase CFE88_RS08390 IPR017552 3-hexulose-6-phosphate isomerase CFE88_RS08390 IPR001347 Sugar isomerase (SIS) CFE88_RS08395 IPR011060 Ribulose-phosphate binding barrel CFE88_RS08395 IPR013785 Aldolase-type TIM barrel CFE88_RS08395 IPR041710 HPS/KGPDC domain CFE88_RS08395 IPR017553 3-hexulose-6-phosphate synthase CFE88_RS08395 IPR001754 Orotidine 5'-phosphate decarboxylase domain CFE88_RS08400 IPR004547 Glucosamine-6-phosphate isomerase CFE88_RS08400 IPR018321 Glucosamine-6-phosphate isomerase, conserved site CFE88_RS08400 IPR037171 NagB/RpiA transferase-like CFE88_RS08400 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase CFE88_RS08410 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 CFE88_RS08410 IPR024078 Putative deacetylase LmbE-like domain superfamily CFE88_RS08410 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related CFE88_RS08415 IPR022838 GTP cyclohydrolase FolE2 CFE88_RS08415 IPR003801 GTP cyclohydrolase FolE2/MptA CFE88_RS08420 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS08420 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS08420 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS08420 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS08420 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS08425 IPR000802 Arsenical pump membrane protein, ArsB CFE88_RS08430 IPR023485 Phosphotyrosine protein phosphatase I CFE88_RS08430 IPR036196 Phosphotyrosine protein phosphatase I superfamily CFE88_RS08430 IPR014064 Arsenate reductase ArsC CFE88_RS08440 IPR041171 SDR-like Ig domain CFE88_RS08440 IPR019931 LPXTG cell wall anchor domain CFE88_RS08440 IPR033764 SD-repeat containing protein, B domain CFE88_RS08440 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS08440 IPR013783 Immunoglobulin-like fold CFE88_RS08440 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS08440 IPR011252 Fibrogen-binding domain 1 CFE88_RS08440 IPR008966 Adhesion domain superfamily CFE88_RS08440 IPR011266 Fibrinogen-binding domain 2 CFE88_RS08445 IPR029039 Flavoprotein-like superfamily CFE88_RS08445 IPR005025 NADPH-dependent FMN reductase-like CFE88_RS08450 IPR023214 HAD superfamily CFE88_RS08450 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS08450 IPR036412 HAD-like superfamily CFE88_RS08450 IPR000150 Cof family CFE88_RS08455 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS08455 IPR028883 tRNA-specific adenosine deaminase CFE88_RS08455 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS08455 IPR016193 Cytidine deaminase-like CFE88_RS08460 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08460 IPR031314 Deoxynucleoside kinase domain CFE88_RS08460 IPR002624 Deoxynucleoside kinase CFE88_RS08465 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08465 IPR002624 Deoxynucleoside kinase CFE88_RS08465 IPR031314 Deoxynucleoside kinase domain CFE88_RS08470 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CFE88_RS08470 IPR036291 NAD(P)-binding domain superfamily CFE88_RS08470 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS08470 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08475 IPR011251 Luciferase-like domain CFE88_RS08475 IPR036661 Luciferase-like domain superfamily CFE88_RS08475 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A CFE88_RS08485 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS08490 IPR036291 NAD(P)-binding domain superfamily CFE88_RS08490 IPR011032 GroES-like superfamily CFE88_RS08490 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS08490 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS08490 IPR034710 Ribulose-5-phosphate reductase CFE88_RS08495 IPR034709 Ribitol-5-phosphate cytidylyltransferase CFE88_RS08495 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CFE88_RS08495 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08495 IPR034683 Cytidylyltransferase IspD/TarI CFE88_RS08500 IPR033939 Branched-chain aminotransferase CFE88_RS08500 IPR005786 Branched-chain amino acid aminotransferase II CFE88_RS08500 IPR036038 Aminotransferase-like, PLP-dependent enzymes CFE88_RS08500 IPR018300 Aminotransferase, class IV, conserved site CFE88_RS08500 IPR001544 Aminotransferase class IV CFE88_RS08505 IPR001509 NAD-dependent epimerase/dehydratase CFE88_RS08505 IPR036291 NAD(P)-binding domain superfamily CFE88_RS08515 IPR003462 Ornithine cyclodeaminase/mu-crystallin CFE88_RS08515 IPR023401 Ornithine cyclodeaminase, N-terminal CFE88_RS08515 IPR036291 NAD(P)-binding domain superfamily CFE88_RS08525 IPR011650 Peptidase M20, dimerisation domain CFE88_RS08525 IPR002933 Peptidase M20 CFE88_RS08525 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS08525 IPR017439 Amidohydrolase CFE88_RS08530 IPR000795 Transcription factor, GTP-binding domain CFE88_RS08530 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CFE88_RS08530 IPR004161 Translation elongation factor EFTu-like, domain 2 CFE88_RS08530 IPR033720 Elongation factor Tu, domain 2 CFE88_RS08530 IPR031157 Tr-type G domain, conserved site CFE88_RS08530 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08530 IPR005225 Small GTP-binding protein domain CFE88_RS08530 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CFE88_RS08530 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS08530 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CFE88_RS08530 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CFE88_RS08535 IPR000795 Transcription factor, GTP-binding domain CFE88_RS08535 IPR041095 Elongation Factor G, domain II CFE88_RS08535 IPR009022 Elongation factor G, domain III CFE88_RS08535 IPR035647 EF-G domain III/V-like CFE88_RS08535 IPR000640 Elongation factor EFG, domain V-like CFE88_RS08535 IPR004161 Translation elongation factor EFTu-like, domain 2 CFE88_RS08535 IPR031157 Tr-type G domain, conserved site CFE88_RS08535 IPR035649 EFG, domain V CFE88_RS08535 IPR005517 Translation elongation factor EFG/EF2, domain IV CFE88_RS08535 IPR009000 Translation protein, beta-barrel domain superfamily CFE88_RS08535 IPR004540 Translation elongation factor EFG/EF2 CFE88_RS08535 IPR005225 Small GTP-binding protein domain CFE88_RS08535 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08535 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08540 IPR005717 Ribosomal protein S7, bacterial/organellar-type CFE88_RS08540 IPR020606 Ribosomal protein S7, conserved site CFE88_RS08540 IPR023798 Ribosomal protein S7 domain CFE88_RS08540 IPR036823 Ribosomal protein S7 domain superfamily CFE88_RS08540 IPR000235 Ribosomal protein S5/S7 CFE88_RS08545 IPR006032 Ribosomal protein S12/S23 CFE88_RS08545 IPR005679 Ribosomal protein S12, bacterial-type CFE88_RS08545 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08550 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS08550 IPR029064 50S ribosomal protein L30e-like CFE88_RS08550 IPR023460 Ribosomal protein L7Ae, putative CFE88_RS08555 IPR038120 RNA polymerase Rpb1, funnel domain superfamily CFE88_RS08555 IPR006592 RNA polymerase, N-terminal CFE88_RS08555 IPR007080 RNA polymerase Rpb1, domain 1 CFE88_RS08555 IPR007066 RNA polymerase Rpb1, domain 3 CFE88_RS08555 IPR042102 RNA polymerase Rpb1, domain 3 superfamily CFE88_RS08555 IPR007083 RNA polymerase Rpb1, domain 4 CFE88_RS08555 IPR007081 RNA polymerase Rpb1, domain 5 CFE88_RS08555 IPR000722 RNA polymerase, alpha subunit CFE88_RS08555 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CFE88_RS08560 IPR007644 RNA polymerase, beta subunit, protrusion CFE88_RS08560 IPR014724 RNA polymerase Rpb2, OB-fold CFE88_RS08560 IPR037034 RNA polymerase Rpb2, domain 2 superfamily CFE88_RS08560 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CFE88_RS08560 IPR015712 DNA-directed RNA polymerase, subunit 2 CFE88_RS08560 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain CFE88_RS08560 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type CFE88_RS08560 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily CFE88_RS08560 IPR007645 RNA polymerase Rpb2, domain 3 CFE88_RS08560 IPR007121 RNA polymerase, beta subunit, conserved site CFE88_RS08560 IPR007642 RNA polymerase Rpb2, domain 2 CFE88_RS08560 IPR007641 RNA polymerase Rpb2, domain 7 CFE88_RS08565 IPR007848 Methyltransferase small domain CFE88_RS08565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS08570 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CFE88_RS08570 IPR000206 Ribosomal protein L7/L12 CFE88_RS08570 IPR008932 Ribosomal protein L7/L12, oligomerisation CFE88_RS08570 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily CFE88_RS08570 IPR013823 Ribosomal protein L7/L12, C-terminal CFE88_RS08575 IPR001790 Ribosomal protein L10P CFE88_RS08575 IPR022973 Ribosomal protein L10 CFE88_RS08575 IPR002363 Ribosomal protein L10, eubacterial, conserved site CFE88_RS08585 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CFE88_RS08585 IPR023674 Ribosomal protein L1-like CFE88_RS08585 IPR002143 Ribosomal protein L1 CFE88_RS08585 IPR005878 Ribosomal protein L1, bacterial-type CFE88_RS08585 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CFE88_RS08585 IPR023673 Ribosomal protein L1, conserved site CFE88_RS08590 IPR020783 Ribosomal protein L11, C-terminal CFE88_RS08590 IPR020784 Ribosomal protein L11, N-terminal CFE88_RS08590 IPR006519 Ribosomal protein L11, bacterial-type CFE88_RS08590 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CFE88_RS08590 IPR000911 Ribosomal protein L11/L12 CFE88_RS08590 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CFE88_RS08595 IPR036735 NusG, N-terminal domain superfamily CFE88_RS08595 IPR014722 Ribosomal protein L2, domain 2 CFE88_RS08595 IPR001062 Transcription antitermination protein, NusG CFE88_RS08595 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CFE88_RS08595 IPR006645 NusG, N-terminal CFE88_RS08595 IPR008991 Translation protein SH3-like domain superfamily CFE88_RS08600 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit CFE88_RS08600 IPR038379 SecE superfamily CFE88_RS08600 IPR005807 SecE subunit of protein translocation complex, bacterial-like CFE88_RS08605 IPR038584 Ribosomal protein L33 superfamily CFE88_RS08605 IPR001705 Ribosomal protein L33 CFE88_RS08605 IPR018264 Ribosomal protein L33, conserved site CFE88_RS08605 IPR011332 Zinc-binding ribosomal protein CFE88_RS08615 IPR010298 Protein of unknown function DUF901 CFE88_RS08620 IPR029064 50S ribosomal protein L30e-like CFE88_RS08620 IPR004441 RNA methyltransferase TrmH family CFE88_RS08620 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS08620 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CFE88_RS08620 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS08620 IPR029028 Alpha/beta knot methyltransferases CFE88_RS08625 IPR000999 Ribonuclease III domain CFE88_RS08625 IPR008226 Mini-ribonuclease 3 family CFE88_RS08625 IPR036389 Ribonuclease III, endonuclease domain superfamily CFE88_RS08630 IPR015803 Cysteine-tRNA ligase CFE88_RS08630 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CFE88_RS08630 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CFE88_RS08630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08630 IPR032678 tRNA synthetases class I, catalytic domain CFE88_RS08630 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS08635 IPR018357 Hexapeptide transferase, conserved site CFE88_RS08635 IPR042122 Serine acetyltransferase, N-terminal domain superfamily CFE88_RS08635 IPR011004 Trimeric LpxA-like superfamily CFE88_RS08635 IPR005881 Serine O-acetyltransferase CFE88_RS08635 IPR001451 Hexapeptide repeat CFE88_RS08640 IPR033910 Glutamyl-tRNA synthetase CFE88_RS08640 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CFE88_RS08640 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08640 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CFE88_RS08640 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08640 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CFE88_RS08640 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CFE88_RS08640 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CFE88_RS08645 IPR029060 PIN-like domain superfamily CFE88_RS08645 IPR002792 TRAM domain CFE88_RS08645 IPR002716 PIN domain CFE88_RS08650 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08650 IPR003593 AAA+ ATPase domain CFE88_RS08650 IPR004504 DNA repair protein RadA CFE88_RS08650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08650 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CFE88_RS08650 IPR041166 LapB, rubredoxin metal binding domain CFE88_RS08650 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08655 IPR036628 Clp, N-terminal domain superfamily CFE88_RS08655 IPR041546 ClpA/ClpB, AAA lid domain CFE88_RS08655 IPR003593 AAA+ ATPase domain CFE88_RS08655 IPR003959 ATPase, AAA-type, core CFE88_RS08655 IPR019489 Clp ATPase, C-terminal CFE88_RS08655 IPR004176 Clp, N-terminal CFE88_RS08655 IPR001270 ClpA/B family CFE88_RS08655 IPR018368 ClpA/B, conserved site 1 CFE88_RS08655 IPR001943 UVR domain CFE88_RS08655 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08655 IPR028299 ClpA/B, conserved site 2 CFE88_RS08660 IPR022414 ATP:guanido phosphotransferase, catalytic domain CFE88_RS08660 IPR022415 ATP:guanido phosphotransferase active site CFE88_RS08660 IPR000749 ATP:guanido phosphotransferase CFE88_RS08660 IPR023660 Protein arginine kinase CFE88_RS08660 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CFE88_RS08665 IPR001943 UVR domain CFE88_RS08665 IPR025542 YacH protein CFE88_RS08665 IPR001510 Zinc finger, PARP-type CFE88_RS08670 IPR041902 CtsR, N-terminal domain superfamily CFE88_RS08670 IPR040465 CtsR, N-terminal HTH domain CFE88_RS08670 IPR041908 CtsR, C-terminal domain superfamily CFE88_RS08670 IPR041473 CtsR, C-terminal dimerization domain CFE88_RS08670 IPR008463 Transcriptional regulator CtsR CFE88_RS08675 IPR002668 Concentrative nucleoside transporter N-terminal domain CFE88_RS08675 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CFE88_RS08675 IPR008276 Concentrative nucleoside transporter CFE88_RS08675 IPR011657 Concentrative nucleoside transporter C-terminal domain CFE88_RS08685 IPR029062 Class I glutamine amidotransferase-like CFE88_RS08685 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO CFE88_RS08685 IPR021196 PdxT/SNO family, conserved site CFE88_RS08690 IPR033755 PdxS/SNZ N-terminal domain CFE88_RS08690 IPR011060 Ribulose-phosphate binding barrel CFE88_RS08690 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ CFE88_RS08690 IPR013785 Aldolase-type TIM barrel CFE88_RS08695 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS08695 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS08695 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08695 IPR004839 Aminotransferase, class I/classII CFE88_RS08695 IPR000524 Transcription regulator HTH, GntR CFE88_RS08695 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS08780 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II CFE88_RS08780 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS08780 IPR002313 Lysine-tRNA ligase, class II CFE88_RS08780 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CFE88_RS08780 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS08780 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS08780 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08785 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily CFE88_RS08785 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CFE88_RS08790 IPR006157 Dihydroneopterin aldolase/epimerase domain CFE88_RS08790 IPR006156 Dihydroneopterin aldolase CFE88_RS08795 IPR006390 Dihydropteroate synthase CFE88_RS08795 IPR011005 Dihydropteroate synthase-like CFE88_RS08795 IPR000489 Pterin-binding domain CFE88_RS08800 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CFE88_RS08800 IPR001926 Pyridoxal-phosphate dependent enzyme CFE88_RS08800 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS08800 IPR005856 Cysteine synthase CFE88_RS08800 IPR005859 Cysteine synthase CysK CFE88_RS08805 IPR016153 Heat shock protein Hsp33, N-terminal CFE88_RS08805 IPR000397 Heat shock protein Hsp33 CFE88_RS08805 IPR016154 Heat shock protein Hsp33, C-terminal CFE88_RS08810 IPR003959 ATPase, AAA-type, core CFE88_RS08810 IPR003960 ATPase, AAA-type, conserved site CFE88_RS08810 IPR005936 Peptidase, FtsH CFE88_RS08810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08810 IPR003593 AAA+ ATPase domain CFE88_RS08810 IPR041569 AAA ATPase, AAA+ lid domain CFE88_RS08810 IPR000642 Peptidase M41 CFE88_RS08810 IPR037219 Peptidase M41-like CFE88_RS08810 IPR011546 Peptidase M41, FtsH extracellular CFE88_RS08815 IPR000836 Phosphoribosyltransferase domain CFE88_RS08815 IPR029057 Phosphoribosyltransferase-like CFE88_RS08815 IPR005904 Hypoxanthine phosphoribosyl transferase CFE88_RS08820 IPR012094 tRNA(Ile)-lysidine synthase CFE88_RS08820 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal CFE88_RS08820 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CFE88_RS08820 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08820 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal CFE88_RS08825 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08825 IPR022967 RNA-binding domain, S1 CFE88_RS08825 IPR003029 S1 domain CFE88_RS08835 IPR025490 RNA-binding protein, HP1423 type CFE88_RS08835 IPR036986 RNA-binding S4 domain superfamily CFE88_RS08835 IPR002942 RNA-binding S4 domain CFE88_RS08840 IPR035013 YabN, N-terminal CFE88_RS08840 IPR011551 NTP pyrophosphohydrolase MazG CFE88_RS08840 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS08840 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS08840 IPR035996 Tetrapyrrole methylase superfamily CFE88_RS08840 IPR000878 Tetrapyrrole methylase CFE88_RS08840 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CFE88_RS08845 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS08845 IPR002797 Polysaccharide biosynthesis protein CFE88_RS08845 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CFE88_RS08850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08850 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS08850 IPR003711 CarD-like/TRCF domain CFE88_RS08850 IPR011545 DEAD/DEAH box helicase domain CFE88_RS08850 IPR004576 Transcription-repair coupling factor CFE88_RS08850 IPR001650 Helicase, C-terminal CFE88_RS08850 IPR005118 Transcription-repair-coupling factor, C-terminal domain CFE88_RS08850 IPR036101 CarD-like/TRCF domain superfamily CFE88_RS08850 IPR037235 TRCF-like, C-terminal domain CFE88_RS08850 IPR041471 UvrB, interaction domain CFE88_RS08855 IPR036416 Peptidyl-tRNA hydrolase superfamily CFE88_RS08855 IPR001328 Peptidyl-tRNA hydrolase CFE88_RS08855 IPR018171 Peptidyl-tRNA hydrolase, conserved site CFE88_RS08860 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CFE88_RS08860 IPR001021 Ribosomal protein L25, long-form CFE88_RS08860 IPR029751 Ribosomal protein L25 CFE88_RS08860 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CFE88_RS08860 IPR020057 Ribosomal protein L25, beta domain CFE88_RS08860 IPR037121 Ribosomal protein L25, C-terminal CFE88_RS08865 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type CFE88_RS08865 IPR000836 Phosphoribosyltransferase domain CFE88_RS08865 IPR005946 Ribose-phosphate pyrophosphokinase CFE88_RS08865 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CFE88_RS08865 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CFE88_RS08865 IPR029057 Phosphoribosyltransferase-like CFE88_RS08870 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08870 IPR011004 Trimeric LpxA-like superfamily CFE88_RS08870 IPR001451 Hexapeptide repeat CFE88_RS08870 IPR038009 GlmU, C-terminal LbH domain CFE88_RS08870 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CFE88_RS08870 IPR018357 Hexapeptide transferase, conserved site CFE88_RS08870 IPR005835 Nucleotidyl transferase domain CFE88_RS08875 IPR007170 Stage V sporulation protein G CFE88_RS08875 IPR036751 Stage V sporulation protein G superfamily CFE88_RS08880 IPR006056 RidA family CFE88_RS08880 IPR019897 RidA, conserved site CFE88_RS08880 IPR035959 RutC-like superfamily CFE88_RS08880 IPR006175 YjgF/YER057c/UK114 family CFE88_RS08885 IPR010078 Pur operon repressor CFE88_RS08885 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS08885 IPR015265 Bacterial purine repressor, N-terminal CFE88_RS08885 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS08885 IPR000836 Phosphoribosyltransferase domain CFE88_RS08885 IPR029057 Phosphoribosyltransferase-like CFE88_RS08890 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08890 IPR006204 GHMP kinase N-terminal domain CFE88_RS08890 IPR036554 GHMP kinase, C-terminal domain superfamily CFE88_RS08890 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08890 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08890 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase CFE88_RS08895 IPR009366 Protein Veg CFE88_RS08900 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS08900 IPR011530 Ribosomal RNA adenine dimethylase CFE88_RS08900 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CFE88_RS08900 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CFE88_RS08900 IPR023165 rRNA adenine dimethylase-like CFE88_RS08900 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site CFE88_RS08905 IPR006171 TOPRIM domain CFE88_RS08905 IPR034141 Ribonuclease M5-like, TOPRIM domain CFE88_RS08905 IPR025156 Ribonuclease M5, C-terminal domain CFE88_RS08905 IPR004466 Ribonuclease M5 CFE88_RS08910 IPR018228 Deoxyribonuclease, TatD-related, conserved site CFE88_RS08910 IPR001130 TatD family CFE88_RS08910 IPR015991 Uncharacterised hydrolase TatD-type CFE88_RS08910 IPR032466 Metal-dependent hydrolase CFE88_RS08915 IPR015413 Methionyl/Leucyl tRNA synthetase CFE88_RS08915 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal CFE88_RS08915 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS08915 IPR023457 Methionine-tRNA synthetase, type 2 CFE88_RS08915 IPR002547 tRNA-binding domain CFE88_RS08915 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08915 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain CFE88_RS08915 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08915 IPR033911 Methioninyl-tRNA synthetase core domain CFE88_RS08915 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08915 IPR014758 Methionyl-tRNA synthetase CFE88_RS08915 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CFE88_RS08920 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CFE88_RS08920 IPR008189 rRNA small subunit methyltransferase I CFE88_RS08920 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS08920 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS08920 IPR035996 Tetrapyrrole methylase superfamily CFE88_RS08920 IPR000878 Tetrapyrrole methylase CFE88_RS08925 IPR035901 GIY-YIG endonuclease superfamily CFE88_RS08925 IPR000305 GIY-YIG endonuclease CFE88_RS08930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS08930 IPR007848 Methyltransferase small domain CFE88_RS08935 IPR010377 Initiation control protein YabA CFE88_RS08940 IPR007557 PSP1, C-terminal CFE88_RS08945 IPR004622 DNA polymerase III, delta prime subunit CFE88_RS08945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08945 IPR015199 DNA polymerase III, delta subunit, C-terminal CFE88_RS08950 IPR010375 Cyclic-di-AMP receptor CFE88_RS08950 IPR011322 Nitrogen regulatory PII-like, alpha/beta CFE88_RS08950 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS08955 IPR018094 Thymidylate kinase CFE88_RS08955 IPR018095 Thymidylate kinase, conserved site CFE88_RS08955 IPR039430 Thymidylate kinase-like domain CFE88_RS08955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08960 IPR000310 Orn/Lys/Arg decarboxylase, major domain CFE88_RS08960 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS08960 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CFE88_RS08960 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08960 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CFE88_RS08965 IPR000182 GNAT domain CFE88_RS08965 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08985 IPR034137 RecR, TOPRIM domain CFE88_RS08985 IPR006171 TOPRIM domain CFE88_RS08985 IPR015967 Recombination protein RecR, conserved site CFE88_RS08985 IPR023628 Recombination protein RecR, C4-type zinc finger CFE88_RS08985 IPR023627 Recombination protein RecR CFE88_RS08985 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS08985 IPR000093 DNA recombination protein RecR CFE88_RS08990 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CFE88_RS08995 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08995 IPR012763 DNA polymerase III, subunit gamma/ tau CFE88_RS08995 IPR022754 DNA polymerase III, gamma subunit, domain III CFE88_RS08995 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS08995 IPR003593 AAA+ ATPase domain CFE88_RS08995 IPR001270 ClpA/B family CFE88_RS09020 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 CFE88_RS09020 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS09020 IPR028261 Dihydroprymidine dehydrogenase domain II CFE88_RS09020 IPR009051 Alpha-helical ferredoxin CFE88_RS09020 IPR023753 FAD/NAD(P)-binding domain CFE88_RS09025 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS09025 IPR002932 Glutamate synthase domain CFE88_RS09025 IPR002489 Glutamate synthase, alpha subunit, C-terminal CFE88_RS09025 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily CFE88_RS09025 IPR013785 Aldolase-type TIM barrel CFE88_RS09025 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS09025 IPR006982 Glutamate synthase, central-N CFE88_RS09030 IPR005119 LysR, substrate-binding CFE88_RS09030 IPR000847 Transcription regulator HTH, LysR CFE88_RS09030 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS09030 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS09045 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS09045 IPR020084 NUDIX hydrolase, conserved site CFE88_RS09045 IPR000086 NUDIX hydrolase domain CFE88_RS09055 IPR001296 Glycosyl transferase, family 1 CFE88_RS09055 IPR015397 Glycosyl transferase 1, domain A CFE88_RS09060 IPR007921 CHAP domain CFE88_RS09060 IPR018392 LysM domain CFE88_RS09060 IPR036779 LysM domain superfamily CFE88_RS09060 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS09065 IPR004872 Lipoprotein NlpA family CFE88_RS09070 IPR035906 MetI-like superfamily CFE88_RS09070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS09075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09075 IPR018449 NIL domain CFE88_RS09075 IPR003593 AAA+ ATPase domain CFE88_RS09075 IPR026253 Methionine import ATP-binding protein MetN CFE88_RS09075 IPR003439 ABC transporter-like CFE88_RS09075 IPR017871 ABC transporter, conserved site CFE88_RS09075 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CFE88_RS09075 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CFE88_RS09080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS09080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS09080 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09080 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09085 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CFE88_RS09085 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS09085 IPR001926 Pyridoxal-phosphate dependent enzyme CFE88_RS09095 IPR037272 Sodium:neurotransmitter symporter superfamily CFE88_RS09095 IPR000175 Sodium:neurotransmitter symporter CFE88_RS09105 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09105 IPR012354 Esterase/lipase CFE88_RS09105 IPR022742 Serine aminopeptidase, S33 CFE88_RS09120 IPR018745 Domain of unknown function DUF2294 CFE88_RS09125 IPR018752 Uncharacterised protein family UPF0753 CFE88_RS09130 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CFE88_RS09130 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CFE88_RS09140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09140 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS09140 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS09165 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS09165 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS09165 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS09165 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS09165 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS09195 IPR018925 Phage terminase small subunit CFE88_RS09195 IPR038713 Terminase small subunit, N-terminal domain superfamily CFE88_RS09195 IPR005335 Terminase small subunit CFE88_RS09295 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09295 IPR017926 Glutamine amidotransferase CFE88_RS09295 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS09295 IPR004739 GMP synthase, glutamine amidotransferase CFE88_RS09295 IPR022955 GMP synthase CFE88_RS09295 IPR025777 GMP synthetase ATP pyrophosphatase domain CFE88_RS09295 IPR001674 GMP synthase, C-terminal CFE88_RS09300 IPR013785 Aldolase-type TIM barrel CFE88_RS09300 IPR001093 IMP dehydrogenase/GMP reductase CFE88_RS09300 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CFE88_RS09300 IPR005990 Inosine-5'-monophosphate dehydrogenase CFE88_RS09300 IPR000644 CBS domain CFE88_RS09305 IPR006042 Xanthine/uracil permease CFE88_RS09305 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS09305 IPR017588 Uric acid permease UacT-like CFE88_RS09310 IPR029057 Phosphoribosyltransferase-like CFE88_RS09310 IPR010079 Xanthine phosphoribosyltransferase CFE88_RS09310 IPR000836 Phosphoribosyltransferase domain CFE88_RS09315 IPR025889 General stress protein 17M-like domain CFE88_RS09335 IPR036458 Sodium:dicarboxylate symporter superfamily CFE88_RS09335 IPR001991 Sodium:dicarboxylate symporter CFE88_RS09340 IPR000415 Nitroreductase-like CFE88_RS09340 IPR016446 Flavin oxidoreductase Frp family CFE88_RS09340 IPR029479 Nitroreductase CFE88_RS09350 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CFE88_RS09350 IPR017559 Alkyl hydroperoxide reductase subunit C CFE88_RS09350 IPR036249 Thioredoxin-like superfamily CFE88_RS09350 IPR013766 Thioredoxin domain CFE88_RS09350 IPR024706 Peroxiredoxin, AhpC-type CFE88_RS09355 IPR012081 Alkyl hydroperoxide reductase subunit F CFE88_RS09355 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS09355 IPR023753 FAD/NAD(P)-binding domain CFE88_RS09355 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CFE88_RS09355 IPR012336 Thioredoxin-like fold CFE88_RS09355 IPR036249 Thioredoxin-like superfamily CFE88_RS09385 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS09385 IPR029033 Histidine phosphatase superfamily CFE88_RS09385 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CFE88_RS09385 IPR023086 Phosphoglycerate mutase, GpmB, probable CFE88_RS09390 IPR001123 Amino acid exporter protein, LeuE-type CFE88_RS09390 IPR004778 Homoserine/Threonine efflux protein CFE88_RS09430 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS09430 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS09430 IPR023488 HTH-type transcriptional regulator Hpr CFE88_RS09430 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS09430 IPR000835 MarR-type HTH domain CFE88_RS09440 IPR002818 DJ-1/PfpI CFE88_RS09440 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09460 IPR036870 Ribosomal protein S18 superfamily CFE88_RS09460 IPR001648 Ribosomal protein S18 CFE88_RS09460 IPR018275 Ribosomal protein S18, conserved site CFE88_RS09465 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS09465 IPR011344 Single-stranded DNA-binding protein CFE88_RS09465 IPR000424 Primosome PriB/single-strand DNA-binding CFE88_RS09470 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CFE88_RS09470 IPR020815 Ribosomal protein S6, conserved site CFE88_RS09470 IPR000529 Ribosomal protein S6 CFE88_RS09470 IPR035980 Ribosomal protein S6 superfamily CFE88_RS09470 IPR020814 Ribosomal protein S6, plastid/chloroplast CFE88_RS09485 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CFE88_RS09485 IPR031167 OBG-type guanine nucleotide-binding (G) domain CFE88_RS09485 IPR006073 GTP binding domain CFE88_RS09485 IPR012675 Beta-grasp domain superfamily CFE88_RS09485 IPR012676 TGS-like CFE88_RS09485 IPR041706 YchF, N-terminal CFE88_RS09485 IPR013029 YchF, C-terminal domain CFE88_RS09485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09485 IPR023192 TGS-like domain superfamily CFE88_RS09485 IPR004095 TGS CFE88_RS09490 IPR009296 Protein of unknown function DUF951 CFE88_RS09495 IPR011066 Mechanosensitive ion channel MscS, C-terminal CFE88_RS09495 IPR006685 Mechanosensitive ion channel MscS CFE88_RS09495 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CFE88_RS09495 IPR010920 LSM domain superfamily CFE88_RS09495 IPR023408 Mechanosensitive ion channel MscS domain superfamily CFE88_RS09500 IPR041468 ParB/Spo0J, HTH domain CFE88_RS09500 IPR003115 ParB/Sulfiredoxin CFE88_RS09500 IPR004437 ParB/RepB/Spo0J partition protein CFE88_RS09500 IPR036086 ParB/Sulfiredoxin superfamily CFE88_RS09510 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09510 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS09510 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09510 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS09515 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS09515 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09515 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09515 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS09520 IPR029041 FAD-linked oxidoreductase-like CFE88_RS09520 IPR003726 Homocysteine-binding domain CFE88_RS09520 IPR036589 Homocysteine-binding domain superfamily CFE88_RS09520 IPR003171 Methylenetetrahydrofolate reductase CFE88_RS09525 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal CFE88_RS09525 IPR038071 UROD/MetE-like superfamily CFE88_RS09525 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal CFE88_RS09525 IPR006276 Cobalamin-independent methionine synthase CFE88_RS09535 IPR020616 Thiolase, N-terminal CFE88_RS09535 IPR020615 Thiolase, acyl-enzyme intermediate active site CFE88_RS09535 IPR020610 Thiolase, active site CFE88_RS09535 IPR020617 Thiolase, C-terminal CFE88_RS09535 IPR020613 Thiolase, conserved site CFE88_RS09535 IPR016039 Thiolase-like CFE88_RS09535 IPR002155 Thiolase CFE88_RS09550 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS09550 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CFE88_RS09560 IPR003593 AAA+ ATPase domain CFE88_RS09560 IPR017871 ABC transporter, conserved site CFE88_RS09560 IPR003439 ABC transporter-like CFE88_RS09560 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09580 IPR000182 GNAT domain CFE88_RS09580 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS09590 IPR019758 Peptidase S26A, signal peptidase I, conserved site CFE88_RS09590 IPR019533 Peptidase S26 CFE88_RS09590 IPR036286 LexA/Signal peptidase-like superfamily CFE88_RS09590 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS09590 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CFE88_RS09590 IPR019756 Peptidase S26A, signal peptidase I, serine active site CFE88_RS09605 IPR003593 AAA+ ATPase domain CFE88_RS09605 IPR003439 ABC transporter-like CFE88_RS09605 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09610 IPR003838 ABC transporter permease protein domain CFE88_RS09610 IPR027022 ABC transporter permease protein, BceB-type CFE88_RS09620 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS09620 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09625 IPR005085 Carbohydrate binding module family 25 CFE88_RS09625 IPR003838 ABC transporter permease protein domain CFE88_RS09625 IPR025857 MacB-like periplasmic core domain CFE88_RS09630 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09630 IPR003439 ABC transporter-like CFE88_RS09630 IPR003593 AAA+ ATPase domain CFE88_RS09630 IPR017871 ABC transporter, conserved site CFE88_RS09670 IPR036086 ParB/Sulfiredoxin superfamily CFE88_RS09670 IPR041468 ParB/Spo0J, HTH domain CFE88_RS09670 IPR003115 ParB/Sulfiredoxin CFE88_RS09670 IPR004437 ParB/RepB/Spo0J partition protein CFE88_RS09670 IPR023705 Nucleoid occlusion protein CFE88_RS09675 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS09675 IPR003682 rRNA small subunit methyltransferase G CFE88_RS09680 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CFE88_RS09680 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG CFE88_RS09680 IPR026904 GidA associated domain 3 CFE88_RS09680 IPR020595 MnmG-related, conserved site CFE88_RS09680 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS09685 IPR006073 GTP binding domain CFE88_RS09685 IPR018948 GTP-binding protein TrmE, N-terminal CFE88_RS09685 IPR031168 TrmE-type guanine nucleotide-binding domain CFE88_RS09685 IPR027368 tRNA modification GTPase MnmE domain 2 CFE88_RS09685 IPR025867 MnmE, helical domain CFE88_RS09685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09685 IPR005225 Small GTP-binding protein domain CFE88_RS09685 IPR004520 tRNA modification GTPase MnmE CFE88_RS09685 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CFE88_RS09690 IPR020539 Ribonuclease P, conserved site CFE88_RS09690 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS09690 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09690 IPR000100 Ribonuclease P CFE88_RS09695 IPR020939 Ribosomal protein L34, conserved site CFE88_RS09695 IPR000271 Ribosomal protein L34 CFE88_RS09700 IPR003593 AAA+ ATPase domain CFE88_RS09700 IPR001957 Chromosomal replication control, initiator DnaA CFE88_RS09700 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CFE88_RS09700 IPR013317 Chromosomal replication initiator protein DnaA CFE88_RS09700 IPR013159 Chromosomal replication initiator, DnaA C-terminal CFE88_RS09700 IPR024633 DnaA N-terminal domain CFE88_RS09700 IPR038454 DnaA, N-terminal domain superfamily CFE88_RS09700 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09700 IPR010921 Trp repressor/replication initiator CFE88_RS09705 IPR001001 DNA polymerase III, beta sliding clamp CFE88_RS09705 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal CFE88_RS09705 IPR022637 DNA polymerase III, beta sliding clamp, central CFE88_RS09705 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal CFE88_RS09710 IPR002942 RNA-binding S4 domain CFE88_RS09710 IPR036986 RNA-binding S4 domain superfamily CFE88_RS09710 IPR014330 RNA-binding S4-related,YaaA CFE88_RS09715 IPR042174 DNA-binding RecF, domain 2 CFE88_RS09715 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS09715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09715 IPR018078 DNA-binding, RecF, conserved site CFE88_RS09715 IPR001238 DNA-binding, RecF CFE88_RS09720 IPR006171 TOPRIM domain CFE88_RS09720 IPR034160 DNA gyrase subunit B, TOPRIM domain CFE88_RS09720 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS09720 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS09720 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS09720 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09720 IPR011557 DNA gyrase, subunit B CFE88_RS09720 IPR001241 DNA topoisomerase, type IIA CFE88_RS09720 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CFE88_RS09720 IPR002288 DNA gyrase B subunit, C-terminal CFE88_RS09720 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CFE88_RS09720 IPR018522 DNA topoisomerase, type IIA, conserved site CFE88_RS09720 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CFE88_RS09725 IPR005743 DNA gyrase, subunit A CFE88_RS09725 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CFE88_RS09725 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CFE88_RS09725 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CFE88_RS09725 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CFE88_RS09725 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CFE88_RS09725 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CFE88_RS09730 IPR029056 Ribokinase-like CFE88_RS09730 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase CFE88_RS09730 IPR017953 Carbohydrate kinase, predicted, conserved site CFE88_RS09735 IPR015866 Serine-tRNA synthetase, type1, N-terminal CFE88_RS09735 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CFE88_RS09735 IPR006195 Aminoacyl-tRNA synthetase, class II CFE88_RS09735 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CFE88_RS09735 IPR002317 Serine-tRNA ligase, type1 CFE88_RS09735 IPR033729 Serine-tRNA ligase catalytic core domain CFE88_RS09735 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CFE88_RS09740 IPR005135 Endonuclease/exonuclease/phosphatase CFE88_RS09740 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CFE88_RS09740 IPR017766 Sphingomyelinase C/phospholipase C CFE88_RS09755 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09755 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS09755 IPR008220 Homoserine/serine acetyltransferase MetX-like CFE88_RS09765 IPR000160 GGDEF domain CFE88_RS09765 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA CFE88_RS09765 IPR001667 DDH domain CFE88_RS09765 IPR038763 DHH phosphoesterase superfamily CFE88_RS09765 IPR003156 DHHA1 domain CFE88_RS09770 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CFE88_RS09770 IPR020594 Ribosomal protein L9, bacteria/chloroplast CFE88_RS09770 IPR020070 Ribosomal protein L9, N-terminal CFE88_RS09770 IPR000244 Ribosomal protein L9 CFE88_RS09770 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CFE88_RS09770 IPR036935 Ribosomal protein L9, N-terminal domain superfamily CFE88_RS09770 IPR020069 Ribosomal protein L9, C-terminal CFE88_RS09775 IPR007693 DNA helicase, DnaB-like, N-terminal CFE88_RS09775 IPR003593 AAA+ ATPase domain CFE88_RS09775 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CFE88_RS09775 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09775 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS09775 IPR007694 DNA helicase, DnaB-like, C-terminal CFE88_RS09775 IPR007692 DNA helicase, DnaB type CFE88_RS09780 IPR018220 Adenylosuccinate synthase, GTP-binding site CFE88_RS09780 IPR042111 Adenylosuccinate synthetase, domain 3 CFE88_RS09780 IPR042109 Adenylosuccinate synthetase, domain 1 CFE88_RS09780 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09780 IPR042110 Adenylosuccinate synthetase, domain 2 CFE88_RS09780 IPR033128 Adenylosuccinate synthase, active site CFE88_RS09780 IPR001114 Adenylosuccinate synthetase CFE88_RS09800 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS09800 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS09800 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS09800 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS09800 IPR011006 CheY-like superfamily CFE88_RS09800 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS09805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS09805 IPR029151 Periplasmic sensor-like domain superfamily CFE88_RS09805 IPR035965 PAS domain superfamily CFE88_RS09805 IPR000700 PAS-associated, C-terminal CFE88_RS09805 IPR000014 PAS domain CFE88_RS09805 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS09805 IPR013767 PAS fold CFE88_RS09805 IPR005467 Histidine kinase domain CFE88_RS09805 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS09805 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS09805 IPR003660 HAMP domain CFE88_RS09805 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CFE88_RS09810 IPR042274 Regulatory protein YycH/YycI , domain 2 CFE88_RS09810 IPR009996 Regulatory protein YycH CFE88_RS09820 IPR001279 Metallo-beta-lactamase CFE88_RS09820 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS09825 IPR029028 Alpha/beta knot methyltransferases CFE88_RS09825 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS09825 IPR003742 RNA methyltransferase RlmH CFE88_RS09830 IPR028629 CRISPR-associated endonuclease Cas9 CFE88_RS09830 IPR032240 CRISPR-associated endonuclease Cas9, REC lobe CFE88_RS09830 IPR040656 Cas9, WED domain CFE88_RS09830 IPR033114 Cas9-type HNH domain CFE88_RS09830 IPR003615 HNH nuclease CFE88_RS09830 IPR041383 RuvC endonuclease subdomain 3 CFE88_RS09830 IPR040555 Cas9, PI domain CFE88_RS09835 IPR002729 CRISPR-associated protein Cas1 CFE88_RS09835 IPR019855 CRISPR-associated protein Cas1, NMENI subtype CFE88_RS09835 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain CFE88_RS09835 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain CFE88_RS09840 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 CFE88_RS09840 IPR021127 CRISPR-associated endonuclease Cas2 CFE88_RS09865 IPR038641 Csa superfamily CFE88_RS09865 IPR007595 Csa family CFE88_RS09895 IPR038641 Csa superfamily CFE88_RS09895 IPR007595 Csa family CFE88_RS09930 IPR038641 Csa superfamily CFE88_RS09930 IPR007595 Csa family CFE88_RS09935 IPR000055 Restriction endonuclease, type I, HsdS CFE88_RS09940 IPR038728 Uncharacterized membrane protein YkvI CFE88_RS09945 IPR038641 Csa superfamily CFE88_RS09945 IPR007595 Csa family CFE88_RS09955 IPR008250 P-type ATPase, A domain superfamily CFE88_RS09955 IPR027256 P-type ATPase, subfamily IB CFE88_RS09955 IPR001757 P-type ATPase CFE88_RS09955 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS09955 IPR018303 P-type ATPase, phosphorylation site CFE88_RS09955 IPR023298 P-type ATPase, transmembrane domain superfamily CFE88_RS09955 IPR023214 HAD superfamily CFE88_RS09955 IPR036412 HAD-like superfamily CFE88_RS09960 IPR011438 Domain of unknown function DUF1541 CFE88_RS09965 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain CFE88_RS09965 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain CFE88_RS09965 IPR017782 Hydroxyacylglutathione hydrolase CFE88_RS09965 IPR001279 Metallo-beta-lactamase CFE88_RS09965 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CFE88_RS09970 IPR027396 DsrEFH-like CFE88_RS09970 IPR032836 DsrE2-like family CFE88_RS09975 IPR038390 Metal-sensitive transcriptional repressor superfamily CFE88_RS09975 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS09980 IPR002781 Transmembrane protein TauE-like CFE88_RS09985 IPR023485 Phosphotyrosine protein phosphatase I CFE88_RS09985 IPR036196 Phosphotyrosine protein phosphatase I superfamily CFE88_RS09985 IPR014064 Arsenate reductase ArsC CFE88_RS09990 IPR000802 Arsenical pump membrane protein, ArsB CFE88_RS09995 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS09995 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS09995 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS09995 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS09995 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS10000 IPR025723 Anion-transporting ATPase-like domain CFE88_RS10000 IPR016300 Arsenical pump ATPase, ArsA/GET3 CFE88_RS10000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10000 IPR027541 Arsenical pump-driving ATPase CFE88_RS10005 IPR036249 Thioredoxin-like superfamily CFE88_RS10005 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD CFE88_RS10010 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS10010 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS10010 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS10010 IPR011991 ArsR-like helix-turn-helix domain CFE88_RS10010 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS10025 IPR007595 Csa family CFE88_RS10025 IPR038641 Csa superfamily CFE88_RS10035 IPR007595 Csa family CFE88_RS10035 IPR038641 Csa superfamily CFE88_RS10040 IPR011066 Mechanosensitive ion channel MscS, C-terminal CFE88_RS10040 IPR023408 Mechanosensitive ion channel MscS domain superfamily CFE88_RS10040 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CFE88_RS10040 IPR010920 LSM domain superfamily CFE88_RS10040 IPR006685 Mechanosensitive ion channel MscS CFE88_RS10085 IPR013785 Aldolase-type TIM barrel CFE88_RS10085 IPR035587 DUS-like, FMN-binding domain CFE88_RS10085 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal CFE88_RS10085 IPR001269 tRNA-dihydrouridine synthase CFE88_RS10085 IPR018517 tRNA-dihydrouridine synthase, conserved site CFE88_RS10090 IPR006231 Malate:quinone-oxidoreductase CFE88_RS10090 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS10095 IPR007269 Isoprenylcysteine carboxyl methyltransferase CFE88_RS10100 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS10115 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS10115 IPR009057 Homeobox-like domain superfamily CFE88_RS10115 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CFE88_RS10140 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS10140 IPR022263 KxYKxGKxW signal peptide CFE88_RS10140 IPR019931 LPXTG cell wall anchor domain CFE88_RS10145 IPR002208 SecY/SEC61-alpha family CFE88_RS10145 IPR014269 Accessory Sec system protein translocase subunit SecY2 CFE88_RS10145 IPR023201 SecY domain superfamily CFE88_RS10150 IPR022372 Accessory secretory system protein Asp1 CFE88_RS10155 IPR022267 Accessory Sec system protein Asp2 CFE88_RS10155 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10160 IPR022259 Accessory Sec system protein Asp3 CFE88_RS10165 IPR011130 SecA, preprotein cross-linking domain CFE88_RS10165 IPR011116 SecA Wing/Scaffold CFE88_RS10165 IPR014018 SecA motor DEAD CFE88_RS10165 IPR011115 SecA DEAD-like, N-terminal CFE88_RS10165 IPR022490 Protein translocase subunit SecA2 CFE88_RS10165 IPR036670 SecA, preprotein cross-linking domain superfamily CFE88_RS10165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10165 IPR000185 Protein translocase subunit SecA CFE88_RS10165 IPR036266 SecA, Wing/Scaffold superfamily CFE88_RS10170 IPR014267 Glycosyltransferase Gtf1 CFE88_RS10170 IPR001296 Glycosyl transferase, family 1 CFE88_RS10175 IPR014268 Glycosyltransferase-stabilising protein Gtf2 CFE88_RS10185 IPR003593 AAA+ ATPase domain CFE88_RS10185 IPR017871 ABC transporter, conserved site CFE88_RS10185 IPR003439 ABC transporter-like CFE88_RS10185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10195 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10195 IPR004472 Dethiobiotin synthase BioD CFE88_RS10200 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS10200 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA CFE88_RS10200 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10200 IPR005814 Aminotransferase class-III CFE88_RS10200 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS10205 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CFE88_RS10205 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10205 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS10205 IPR004839 Aminotransferase, class I/classII CFE88_RS10205 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS10205 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CFE88_RS10210 IPR005499 6-carboxyhexanoate--CoA ligase CFE88_RS10220 IPR028076 Staphopain proregion CFE88_RS10220 IPR008750 Staphopain peptidase C47 CFE88_RS10220 IPR037155 Staphopain proregion superfamily CFE88_RS10220 IPR025660 Cysteine peptidase, histidine active site CFE88_RS10220 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS10225 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10225 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10230 IPR007595 Csa family CFE88_RS10230 IPR038641 Csa superfamily CFE88_RS10235 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS10235 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS10235 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10245 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS10250 IPR006129 Adhesin B CFE88_RS10250 IPR006128 Adhesion lipoprotein CFE88_RS10250 IPR006127 Periplasmic solute binding protein, ZnuA-like CFE88_RS10255 IPR024932 Flavin transferase ApbE CFE88_RS10255 IPR042159 Flavin-trafficking protein ApbE CFE88_RS10255 IPR003374 ApbE-like superfamily CFE88_RS10260 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS10260 IPR010960 Flavocytochrome c CFE88_RS10260 IPR029039 Flavoprotein-like superfamily CFE88_RS10260 IPR005025 NADPH-dependent FMN reductase-like CFE88_RS10260 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CFE88_RS10260 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CFE88_RS10260 IPR007329 FMN-binding CFE88_RS10265 IPR011701 Major facilitator superfamily CFE88_RS10265 IPR036259 MFS transporter superfamily CFE88_RS10265 IPR020846 Major facilitator superfamily domain CFE88_RS10270 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 IPR014007 Acetoin reductase CFE88_RS10270 IPR036291 NAD(P)-binding domain superfamily CFE88_RS10270 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS10275 IPR017871 ABC transporter, conserved site CFE88_RS10275 IPR024765 TOBE-like domain CFE88_RS10275 IPR003593 AAA+ ATPase domain CFE88_RS10275 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal CFE88_RS10275 IPR008995 Molybdate/tungstate binding, C-terminal CFE88_RS10275 IPR003439 ABC transporter-like CFE88_RS10275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10275 IPR005666 Sulphate transport system permease protein 1 CFE88_RS10310 IPR004298 Nicotianamine synthase CFE88_RS10310 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS10315 IPR016935 Opine metallophore dehydrogenase CFE88_RS10320 IPR000914 Solute-binding protein family 5 domain CFE88_RS10320 IPR011980 Nickel ABC transporter, substrate-binding protein NikA CFE88_RS10320 IPR030678 Peptide/nickel binding protein, MppA-type CFE88_RS10320 IPR023765 Solute-binding protein family 5, conserved site CFE88_RS10320 IPR039424 Solute-binding protein family 5 CFE88_RS10325 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10325 IPR035906 MetI-like superfamily CFE88_RS10330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10330 IPR035906 MetI-like superfamily CFE88_RS10330 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS10335 IPR017871 ABC transporter, conserved site CFE88_RS10335 IPR003439 ABC transporter-like CFE88_RS10335 IPR003593 AAA+ ATPase domain CFE88_RS10335 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10340 IPR003593 AAA+ ATPase domain CFE88_RS10340 IPR003439 ABC transporter-like CFE88_RS10340 IPR017871 ABC transporter, conserved site CFE88_RS10340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10345 IPR036259 MFS transporter superfamily CFE88_RS10345 IPR011701 Major facilitator superfamily CFE88_RS10345 IPR020846 Major facilitator superfamily domain CFE88_RS10350 IPR005949 Formate acetyltransferase CFE88_RS10350 IPR004184 Pyruvate formate lyase domain CFE88_RS10350 IPR001150 Glycine radical domain CFE88_RS10350 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS10355 IPR034457 Organic radical-activating enzymes CFE88_RS10355 IPR034465 Pyruvate formate-lyase activase CFE88_RS10355 IPR012839 Organic radical enzyme activase CFE88_RS10355 IPR013785 Aldolase-type TIM barrel CFE88_RS10355 IPR001989 Radical-activating enzyme, conserved site CFE88_RS10355 IPR007197 Radical SAM CFE88_RS10355 IPR012838 Pyruvate formate-lyase 1 activating enzyme CFE88_RS10360 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS10360 IPR002933 Peptidase M20 CFE88_RS10360 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS10360 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10360 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10365 IPR004685 Branched-chain amino acid transport system II carrier protein CFE88_RS10370 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CFE88_RS10370 IPR009057 Homeobox-like domain superfamily CFE88_RS10370 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS10370 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal CFE88_RS10375 IPR013785 Aldolase-type TIM barrel CFE88_RS10375 IPR008567 3-keto-5-aminohexanoate cleavage enzyme CFE88_RS10380 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CFE88_RS10380 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS10380 IPR026578 L-carnitine dehydrogenase CFE88_RS10380 IPR036291 NAD(P)-binding domain superfamily CFE88_RS10380 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CFE88_RS10380 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CFE88_RS10390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10390 IPR000644 CBS domain CFE88_RS10390 IPR005892 Glycine betaine transport ATP-binding subunit CFE88_RS10390 IPR003439 ABC transporter-like CFE88_RS10390 IPR017871 ABC transporter, conserved site CFE88_RS10390 IPR003593 AAA+ ATPase domain CFE88_RS10395 IPR035906 MetI-like superfamily CFE88_RS10395 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10400 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS10405 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10405 IPR035906 MetI-like superfamily CFE88_RS10410 IPR018392 LysM domain CFE88_RS10410 IPR036779 LysM domain superfamily CFE88_RS10410 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10410 IPR000801 Putative esterase CFE88_RS10415 IPR018385 C4-dicarboxylate anaerobic carrier-like CFE88_RS10420 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS10420 IPR036393 Acetylglutamate kinase-like superfamily CFE88_RS10420 IPR003964 Carbamate kinase CFE88_RS10425 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CFE88_RS10425 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS10425 IPR002292 Ornithine/putrescine carbamoyltransferase CFE88_RS10425 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS10425 IPR024904 Ornithine carbamoyltransferase CFE88_RS10425 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS10435 IPR022858 Metallothiol transferase FosB CFE88_RS10435 IPR037523 Vicinal oxygen chelate (VOC) domain CFE88_RS10435 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS10435 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS10440 IPR006423 5-nucleotidase lipoprotein e(P4) CFE88_RS10440 IPR023214 HAD superfamily CFE88_RS10440 IPR036412 HAD-like superfamily CFE88_RS10440 IPR005519 Acid phosphatase, class B-like CFE88_RS10445 IPR010722 Biotin and thiamin synthesis-associated domain CFE88_RS10445 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CFE88_RS10445 IPR024177 Biotin synthase CFE88_RS10445 IPR007197 Radical SAM CFE88_RS10445 IPR006638 Elp3/MiaB/NifB CFE88_RS10445 IPR013785 Aldolase-type TIM barrel CFE88_RS10450 IPR016205 Glycerol dehydrogenase CFE88_RS10450 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CFE88_RS10450 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CFE88_RS10455 IPR004006 DhaK domain CFE88_RS10455 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 CFE88_RS10460 IPR012737 Dihydroxyacetone kinase, subunit L CFE88_RS10460 IPR004007 DhaL domain CFE88_RS10460 IPR036117 DhaL domain superfamily CFE88_RS10465 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily CFE88_RS10465 IPR004701 Phosphotransferase system, mannose-type IIA component CFE88_RS10465 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain CFE88_RS10465 IPR039643 Dihydroxyacetone kinase phosphotransferase subunit DhaM CFE88_RS10480 IPR036259 MFS transporter superfamily CFE88_RS10480 IPR011701 Major facilitator superfamily CFE88_RS10480 IPR004638 Drug resistance transporter EmrB-like CFE88_RS10480 IPR020846 Major facilitator superfamily domain CFE88_RS10495 IPR006162 Phosphopantetheine attachment site CFE88_RS10495 IPR000873 AMP-dependent synthetase/ligase CFE88_RS10495 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS10495 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CFE88_RS10495 IPR001031 Thioesterase CFE88_RS10495 IPR020845 AMP-binding, conserved site CFE88_RS10495 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS10495 IPR036736 ACP-like superfamily CFE88_RS10495 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10495 IPR010071 Amino acid adenylation domain CFE88_RS10495 IPR010060 Non-ribosomal peptide synthase CFE88_RS10495 IPR001242 Condensation domain CFE88_RS10495 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CFE88_RS10495 IPR042099 AMP-dependent synthetase-like superfamily CFE88_RS10505 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10505 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10515 IPR036259 MFS transporter superfamily CFE88_RS10515 IPR003663 Sugar/inositol transporter CFE88_RS10515 IPR020846 Major facilitator superfamily domain CFE88_RS10515 IPR005829 Sugar transporter, conserved site CFE88_RS10515 IPR005828 Major facilitator, sugar transporter-like CFE88_RS10530 IPR004626 RarD protein CFE88_RS10530 IPR000620 EamA domain CFE88_RS10535 IPR027939 NMT1/THI5 family CFE88_RS10535 IPR015168 SsuA/THI5-like CFE88_RS10540 IPR030676 Citrate carrier CitT-related CFE88_RS10540 IPR001898 Solute carrier family 13 CFE88_RS10545 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS10545 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CFE88_RS10545 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS10545 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS10545 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS10545 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS10545 IPR023753 FAD/NAD(P)-binding domain CFE88_RS10550 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10550 IPR001017 Dehydrogenase, E1 component CFE88_RS10555 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CFE88_RS10555 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS10555 IPR033248 Transketolase, C-terminal domain CFE88_RS10555 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10560 IPR004167 Peripheral subunit-binding domain CFE88_RS10560 IPR011053 Single hybrid motif CFE88_RS10560 IPR036625 E3-binding domain superfamily CFE88_RS10560 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS10560 IPR000089 Biotin/lipoyl attachment CFE88_RS10560 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CFE88_RS10570 IPR000060 BCCT transporter family CFE88_RS10580 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CFE88_RS10580 IPR029762 Pyroglutamyl peptidase I, bacterial-type CFE88_RS10580 IPR033694 Pyroglutamyl peptidase I, Cys active site CFE88_RS10580 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily CFE88_RS10580 IPR033693 Pyroglutamyl peptidase I, Glu active site CFE88_RS10580 IPR000816 Peptidase C15, pyroglutamyl peptidase I CFE88_RS10585 IPR001763 Rhodanese-like domain CFE88_RS10585 IPR036873 Rhodanese-like domain superfamily CFE88_RS10585 IPR022111 Rhodanase, C-terminal CFE88_RS10585 IPR020936 Uncharacterised protein family UPF0176 CFE88_RS10585 IPR040503 UPF0176, acylphosphatase-like domain CFE88_RS10590 IPR011042 Six-bladed beta-propeller, TolB-like CFE88_RS10590 IPR013658 SMP-30/Gluconolactonase/LRE-like region CFE88_RS10595 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CFE88_RS10595 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS10605 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS10605 IPR006231 Malate:quinone-oxidoreductase CFE88_RS10615 IPR016787 Uncharacterised conserved protein UCP021328 CFE88_RS10630 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CFE88_RS10635 IPR024893 ATP phosphoribosyltransferase HisG, short form CFE88_RS10635 IPR013820 ATP phosphoribosyltransferase, catalytic domain CFE88_RS10635 IPR001348 ATP phosphoribosyltransferase HisG CFE88_RS10640 IPR022695 Histidinol dehydrogenase, monofunctional CFE88_RS10640 IPR012131 Histidinol dehydrogenase CFE88_RS10640 IPR001692 Histidinol dehydrogenase, conserved site CFE88_RS10640 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS10645 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site CFE88_RS10645 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily CFE88_RS10645 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS10645 IPR000807 Imidazoleglycerol-phosphate dehydratase CFE88_RS10650 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10650 IPR017926 Glutamine amidotransferase CFE88_RS10650 IPR010139 Imidazole glycerol phosphate synthase, subunit H CFE88_RS10655 IPR011060 Ribulose-phosphate binding barrel CFE88_RS10655 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CFE88_RS10655 IPR013785 Aldolase-type TIM barrel CFE88_RS10655 IPR006062 Histidine biosynthesis CFE88_RS10655 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA CFE88_RS10660 IPR011060 Ribulose-phosphate binding barrel CFE88_RS10660 IPR004651 Histidine biosynthesis, HisF CFE88_RS10660 IPR013785 Aldolase-type TIM barrel CFE88_RS10660 IPR006062 Histidine biosynthesis CFE88_RS10665 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase CFE88_RS10665 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain CFE88_RS10665 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily CFE88_RS10665 IPR023019 Histidine biosynthesis bifunctional protein HisIE CFE88_RS10665 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like CFE88_RS10670 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS10670 IPR001447 Arylamine N-acetyltransferase CFE88_RS10680 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10680 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10695 IPR036259 MFS transporter superfamily CFE88_RS10695 IPR011701 Major facilitator superfamily CFE88_RS10695 IPR020846 Major facilitator superfamily domain CFE88_RS10700 IPR006146 5'-Nucleotidase, conserved site CFE88_RS10700 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10700 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS10700 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CFE88_RS10700 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase CFE88_RS10700 IPR041827 CpdB, N-terminal metallophosphatase domain CFE88_RS10700 IPR006179 5'-Nucleotidase/apyrase CFE88_RS10700 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CFE88_RS10710 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein CFE88_RS10715 IPR012693 ABC transporter, phosphonate import, PhnC CFE88_RS10715 IPR003439 ABC transporter-like CFE88_RS10715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10715 IPR017871 ABC transporter, conserved site CFE88_RS10715 IPR003593 AAA+ ATPase domain CFE88_RS10720 IPR035906 MetI-like superfamily CFE88_RS10720 IPR005769 ABC transporter, permease PhnE/PtxC CFE88_RS10720 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10725 IPR035906 MetI-like superfamily CFE88_RS10725 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS10725 IPR005769 ABC transporter, permease PhnE/PtxC CFE88_RS10735 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10735 IPR022267 Accessory Sec system protein Asp2 CFE88_RS10745 IPR000185 Protein translocase subunit SecA CFE88_RS10745 IPR011130 SecA, preprotein cross-linking domain CFE88_RS10745 IPR022490 Protein translocase subunit SecA2 CFE88_RS10745 IPR014018 SecA motor DEAD CFE88_RS10745 IPR036670 SecA, preprotein cross-linking domain superfamily CFE88_RS10745 IPR011116 SecA Wing/Scaffold CFE88_RS10745 IPR036266 SecA, Wing/Scaffold superfamily CFE88_RS10745 IPR011115 SecA DEAD-like, N-terminal CFE88_RS10745 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10750 IPR001296 Glycosyl transferase, family 1 CFE88_RS10750 IPR014267 Glycosyltransferase Gtf1 CFE88_RS10755 IPR014268 Glycosyltransferase-stabilising protein Gtf2 CFE88_RS10765 IPR011057 Mss4-like superfamily CFE88_RS10765 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CFE88_RS10765 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS10765 IPR002579 Peptide methionine sulphoxide reductase MrsB CFE88_RS10765 IPR028427 Peptide methionine sulfoxide reductase CFE88_RS10775 IPR020846 Major facilitator superfamily domain CFE88_RS10775 IPR036259 MFS transporter superfamily CFE88_RS10775 IPR011701 Major facilitator superfamily CFE88_RS10775 IPR004734 Multidrug resistance protein CFE88_RS10780 IPR012349 FMN-binding split barrel CFE88_RS10780 IPR002563 Flavin reductase like domain CFE88_RS10795 IPR015946 K homology domain-like, alpha/beta CFE88_RS10795 IPR019953 Organic hydroperoxide resistance protein famiy CFE88_RS10795 IPR003718 OsmC/Ohr family CFE88_RS10795 IPR036102 OsmC/Ohr superfamily CFE88_RS10800 IPR002988 Protein G-related albumin-binding (GA) module CFE88_RS10805 IPR007921 CHAP domain CFE88_RS10805 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS10805 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS10810 IPR013525 ABC-2 type transporter CFE88_RS10810 IPR017501 Phage infection protein, YhgE, C-terminal CFE88_RS10810 IPR017500 Phage infection protein, YhgE, N-terminal CFE88_RS10820 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CFE88_RS10820 IPR006327 Phosphotransferase system, fructose IIC component CFE88_RS10820 IPR004715 Phosphotransferase system, IIA component fructose subfamily CFE88_RS10820 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS10820 IPR003352 Phosphotransferase system, EIIC CFE88_RS10820 IPR036095 PTS system IIB component-like superfamily CFE88_RS10820 IPR013014 Phosphotransferase system, EIIC component, type 2 CFE88_RS10820 IPR002178 PTS EIIA type-2 domain CFE88_RS10820 IPR016152 Phosphotransferase/anion transporter CFE88_RS10820 IPR013011 Phosphotransferase system, EIIB component, type 2 CFE88_RS10835 IPR014007 Acetoin reductase CFE88_RS10835 IPR036291 NAD(P)-binding domain superfamily CFE88_RS10835 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS10835 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10855 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10855 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10855 IPR002933 Peptidase M20 CFE88_RS10855 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS10855 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS10860 IPR013856 Peptidase M4 domain CFE88_RS10860 IPR001570 Peptidase M4, C-terminal CFE88_RS10860 IPR027268 Peptidase M4/M1, CTD superfamily CFE88_RS10860 IPR023612 Peptidase M4 CFE88_RS10860 IPR025711 PepSY domain CFE88_RS10860 IPR011096 FTP domain CFE88_RS10865 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS10865 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS10865 IPR020900 Arginine repressor, DNA-binding domain CFE88_RS10865 IPR036251 Arginine repressor, C-terminal domain superfamily CFE88_RS10865 IPR020899 Arginine repressor, C-terminal CFE88_RS10865 IPR001669 Arginine repressor CFE88_RS10870 IPR003876 Arginine deiminase CFE88_RS10875 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS10875 IPR002292 Ornithine/putrescine carbamoyltransferase CFE88_RS10875 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CFE88_RS10875 IPR024904 Ornithine carbamoyltransferase CFE88_RS10875 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS10875 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS10880 IPR022461 Arginine/ornithine antiporter CFE88_RS10880 IPR002293 Amino acid/polyamine transporter I CFE88_RS10880 IPR004754 Amino acid antiporter CFE88_RS10885 IPR000595 Cyclic nucleotide-binding domain CFE88_RS10885 IPR012318 Crp-type HTH domain CFE88_RS10885 IPR018490 Cyclic nucleotide-binding-like CFE88_RS10885 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS10895 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10895 IPR019079 Capsule synthesis protein, CapA CFE88_RS10905 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS10905 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS10905 IPR000399 TPP-binding enzyme, conserved site CFE88_RS10905 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme CFE88_RS10905 IPR029035 DHS-like NAD/FAD-binding domain superfamily CFE88_RS10905 IPR017764 Indole-3-pyruvate decarboxylase, Enterobacteriaceae CFE88_RS10905 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS10905 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10915 IPR036779 LysM domain superfamily CFE88_RS10915 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS10915 IPR018392 LysM domain CFE88_RS10915 IPR007921 CHAP domain CFE88_RS10920 IPR036689 ESAT-6-like superfamily CFE88_RS10920 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10925 IPR023838 Type VII secretion system EsaA CFE88_RS10930 IPR034026 ESAT-6 secretion machinery protein EssA CFE88_RS10930 IPR018920 ESAT-6 secretion machinery protein EssA/YueC CFE88_RS10935 IPR029071 Ubiquitin-like domain superfamily CFE88_RS10935 IPR014921 EsaB CFE88_RS10935 IPR024962 YukD-like CFE88_RS10940 IPR018778 Type VII secretion system EssB CFE88_RS10945 IPR008984 SMAD/FHA domain superfamily CFE88_RS10945 IPR002543 FtsK domain CFE88_RS10945 IPR023839 Firmicutes EssC, C-terminal CFE88_RS10945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10945 IPR022206 Firmicutes EssC, N-terminal CFE88_RS10955 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10955 IPR036689 ESAT-6-like superfamily CFE88_RS10960 IPR031682 Protein of unknown function DUF5081 CFE88_RS10970 IPR027797 Pre-toxin TG domain CFE88_RS10975 IPR036170 Probable antitoxin YezG superfamily CFE88_RS10975 IPR006728 Protein of unknown function DUF600 CFE88_RS10980 IPR027797 Pre-toxin TG domain CFE88_RS10985 IPR006728 Protein of unknown function DUF600 CFE88_RS10985 IPR036170 Probable antitoxin YezG superfamily CFE88_RS10990 IPR027797 Pre-toxin TG domain CFE88_RS11045 IPR018958 Knr4/Smi1-like domain CFE88_RS11045 IPR037883 Knr4/Smi1-like domain superfamily CFE88_RS11055 IPR027797 Pre-toxin TG domain CFE88_RS11060 IPR027797 Pre-toxin TG domain CFE88_RS11065 IPR036170 Probable antitoxin YezG superfamily CFE88_RS11065 IPR006728 Protein of unknown function DUF600 CFE88_RS11070 IPR036170 Probable antitoxin YezG superfamily CFE88_RS11070 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 IPR036170 Probable antitoxin YezG superfamily CFE88_RS11080 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CFE88_RS11080 IPR006118 Recombinase, conserved site CFE88_RS11080 IPR006120 Resolvase, HTH domain CFE88_RS11080 IPR006119 Resolvase, N-terminal catalytic domain CFE88_RS11100 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS11100 IPR038128 Poly-gamma-glutamate hydrolase superfamily CFE88_RS11110 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS11115 IPR016040 NAD(P)-binding domain CFE88_RS11115 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11115 IPR021295 Protein of unknown function DUF2867 CFE88_RS11120 IPR017850 Alkaline-phosphatase-like, core domain superfamily CFE88_RS11120 IPR001952 Alkaline phosphatase CFE88_RS11120 IPR018299 Alkaline phosphatase, active site CFE88_RS11130 IPR011006 CheY-like superfamily CFE88_RS11130 IPR001867 OmpR/PhoB-type DNA-binding domain CFE88_RS11130 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS11130 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11130 IPR039420 Transcriptional regulatory protein WalR-like CFE88_RS11130 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS11135 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CFE88_RS11135 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS11135 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS11135 IPR005467 Histidine kinase domain CFE88_RS11135 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS11140 IPR003593 AAA+ ATPase domain CFE88_RS11140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11140 IPR017871 ABC transporter, conserved site CFE88_RS11140 IPR003439 ABC transporter-like CFE88_RS11160 IPR001734 Sodium/solute symporter CFE88_RS11160 IPR038377 Sodium/glucose symporter superfamily CFE88_RS11190 IPR000835 MarR-type HTH domain CFE88_RS11190 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11190 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS11200 IPR036249 Thioredoxin-like superfamily CFE88_RS11200 IPR000889 Glutathione peroxidase CFE88_RS11210 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11210 IPR002500 Phosphoadenosine phosphosulphate reductase CFE88_RS11210 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase CFE88_RS11210 IPR011798 Adenosine 5'-phosphosulphate reductase CFE88_RS11215 IPR001094 Flavodoxin-like CFE88_RS11215 IPR017927 FAD-binding domain, ferredoxin reductase-type CFE88_RS11215 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily CFE88_RS11215 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CFE88_RS11215 IPR001433 Oxidoreductase FAD/NAD(P)-binding CFE88_RS11215 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS11215 IPR029039 Flavoprotein-like superfamily CFE88_RS11215 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CFE88_RS11215 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding CFE88_RS11215 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain CFE88_RS11215 IPR008254 Flavodoxin/nitric oxide synthase CFE88_RS11220 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CFE88_RS11220 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit CFE88_RS11220 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CFE88_RS11220 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CFE88_RS11220 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CFE88_RS11225 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CFE88_RS11225 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS11225 IPR035996 Tetrapyrrole methylase superfamily CFE88_RS11225 IPR000878 Tetrapyrrole methylase CFE88_RS11225 IPR006366 Uroporphyrin-III C-methyltransferase CFE88_RS11225 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS11230 IPR006367 Sirohaem synthase, N-terminal CFE88_RS11230 IPR028281 Siroheme synthase, central domain CFE88_RS11230 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11230 IPR028161 Siroheme biosynthesis protein Met8 CFE88_RS11235 IPR002781 Transmembrane protein TauE-like CFE88_RS11240 IPR015947 PUA-like superfamily CFE88_RS11240 IPR024951 Sulphate adenylyltransferase catalytic domain CFE88_RS11240 IPR002650 Sulphate adenylyltransferase CFE88_RS11240 IPR020792 Sulphate adenylyltransferase, prokaryotic-type CFE88_RS11240 IPR025980 ATP-sulfurylase PUA-like domain CFE88_RS11240 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11245 IPR002891 Adenylyl-sulfate kinase CFE88_RS11245 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11255 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS11255 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic CFE88_RS11255 IPR001150 Glycine radical domain CFE88_RS11255 IPR005144 ATP-cone domain CFE88_RS11260 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic CFE88_RS11260 IPR034457 Organic radical-activating enzymes CFE88_RS11260 IPR001989 Radical-activating enzyme, conserved site CFE88_RS11260 IPR013785 Aldolase-type TIM barrel CFE88_RS11260 IPR007197 Radical SAM CFE88_RS11265 IPR004668 Anaerobic c4-dicarboxylate membrane transporter CFE88_RS11270 IPR000060 BCCT transporter family CFE88_RS11275 IPR026282 DNA-binding protein, MJ1563 type CFE88_RS11275 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS11275 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11280 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11280 IPR011264 Betaine aldehyde dehydrogenase CFE88_RS11280 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11280 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11280 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11280 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS11280 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11285 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal CFE88_RS11285 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal CFE88_RS11285 IPR012132 Glucose-methanol-choline oxidoreductase CFE88_RS11285 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS11285 IPR011533 Oxygen-dependent choline dehydrogenase CFE88_RS11285 IPR027424 Glucose Oxidase, domain 2 CFE88_RS11300 IPR000873 AMP-dependent synthetase/ligase CFE88_RS11300 IPR020845 AMP-binding, conserved site CFE88_RS11300 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS11300 IPR042099 AMP-dependent synthetase-like superfamily CFE88_RS11305 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS11305 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS11305 IPR018274 PEP-utilising enzyme, active site CFE88_RS11305 IPR000121 PEP-utilising enzyme, C-terminal CFE88_RS11305 IPR036637 Phosphohistidine domain superfamily CFE88_RS11305 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CFE88_RS11305 IPR010121 Pyruvate, phosphate dikinase CFE88_RS11305 IPR023151 PEP-utilising enzyme, conserved site CFE88_RS11305 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CFE88_RS11305 IPR040442 Pyruvate kinase-like domain superfamily CFE88_RS11310 IPR005177 Bifunctional kinase-pyrophosphorylase CFE88_RS11310 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS11315 IPR006231 Malate:quinone-oxidoreductase CFE88_RS11315 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS11325 IPR000741 Fructose-bisphosphate aldolase, class-I CFE88_RS11325 IPR023014 Fructose-bisphosphate aldolase class I, Gram positive bacteria-type CFE88_RS11325 IPR013785 Aldolase-type TIM barrel CFE88_RS11330 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS11330 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS11330 IPR023753 FAD/NAD(P)-binding domain CFE88_RS11330 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS11355 IPR005814 Aminotransferase class-III CFE88_RS11355 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS11355 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS11355 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11360 IPR002293 Amino acid/polyamine transporter I CFE88_RS11365 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS11365 IPR005119 LysR, substrate-binding CFE88_RS11365 IPR000847 Transcription regulator HTH, LysR CFE88_RS11365 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11370 IPR018177 L-lactate dehydrogenase, active site CFE88_RS11370 IPR022383 Lactate/malate dehydrogenase, C-terminal CFE88_RS11370 IPR001236 Lactate/malate dehydrogenase, N-terminal CFE88_RS11370 IPR011304 L-lactate dehydrogenase CFE88_RS11370 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CFE88_RS11370 IPR001557 L-lactate/malate dehydrogenase CFE88_RS11370 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11375 IPR012782 Acetolactate synthase, catabolic CFE88_RS11375 IPR029035 DHS-like NAD/FAD-binding domain superfamily CFE88_RS11375 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11375 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS11375 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS11375 IPR000399 TPP-binding enzyme, conserved site CFE88_RS11375 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS11380 IPR005128 Alpha-acetolactate decarboxylase CFE88_RS11390 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CFE88_RS11390 IPR040442 Pyruvate kinase-like domain superfamily CFE88_RS11390 IPR003700 Ketopantoate hydroxymethyltransferase CFE88_RS11395 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11395 IPR003721 Pantoate-beta-alanine ligase CFE88_RS11395 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain CFE88_RS11400 IPR003190 Aspartate decarboxylase CFE88_RS11400 IPR009010 Aspartate decarboxylase-like domain superfamily CFE88_RS11410 IPR023599 Membrane-associated protein TcaA CFE88_RS11415 IPR003828 Epoxyqueuosine reductase QueH CFE88_RS11425 IPR005719 Dihydroorotate dehydrogenase, class 2 CFE88_RS11425 IPR001295 Dihydroorotate dehydrogenase, conserved site CFE88_RS11425 IPR005720 Dihydroorotate dehydrogenase domain CFE88_RS11425 IPR013785 Aldolase-type TIM barrel CFE88_RS11425 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CFE88_RS11430 IPR011009 Protein kinase-like domain superfamily CFE88_RS11430 IPR016477 Fructosamine/Ketosamine-3-kinase CFE88_RS11435 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS11435 IPR004840 Amino acid permease, conserved site CFE88_RS11445 IPR022488 Polyphosphate kinase-2-related CFE88_RS11445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11455 IPR023346 Lysozyme-like domain superfamily CFE88_RS11455 IPR010618 Transglycosylase-like CFE88_RS11460 IPR002656 Acyltransferase 3 CFE88_RS11460 IPR036514 SGNH hydrolase superfamily CFE88_RS11465 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS11465 IPR007921 CHAP domain CFE88_RS11475 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11475 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CFE88_RS11475 IPR004839 Aminotransferase, class I/classII CFE88_RS11475 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CFE88_RS11480 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11480 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11480 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS11480 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS11480 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11485 IPR017969 Heavy-metal-associated, conserved site CFE88_RS11485 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS11485 IPR006121 Heavy metal-associated domain, HMA CFE88_RS11485 IPR036163 Heavy metal-associated domain superfamily CFE88_RS11485 IPR000428 Copper ion binding protein CFE88_RS11490 IPR027256 P-type ATPase, subfamily IB CFE88_RS11490 IPR036163 Heavy metal-associated domain superfamily CFE88_RS11490 IPR023214 HAD superfamily CFE88_RS11490 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS11490 IPR017969 Heavy-metal-associated, conserved site CFE88_RS11490 IPR018303 P-type ATPase, phosphorylation site CFE88_RS11490 IPR023298 P-type ATPase, transmembrane domain superfamily CFE88_RS11490 IPR008250 P-type ATPase, A domain superfamily CFE88_RS11490 IPR036412 HAD-like superfamily CFE88_RS11490 IPR001757 P-type ATPase CFE88_RS11490 IPR006121 Heavy metal-associated domain, HMA CFE88_RS11490 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS11500 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS11500 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11505 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11505 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11505 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11505 IPR005932 1-pyrroline-5-carboxylate dehydrogenase CFE88_RS11505 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS11505 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11505 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11515 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11515 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CFE88_RS11515 IPR003373 Ferrous iron transport protein B CFE88_RS11515 IPR011640 Ferrous iron transport protein B, C-terminal CFE88_RS11515 IPR041069 FeoB, cytosolic helical domain CFE88_RS11515 IPR030389 FeoB-type guanine nucleotide-binding (G) domain CFE88_RS11530 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CFE88_RS11530 IPR023546 Methylated-DNA--protein-cysteine methyltransferase CFE88_RS11530 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily CFE88_RS11530 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CFE88_RS11530 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CFE88_RS11530 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain CFE88_RS11530 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11535 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal CFE88_RS11535 IPR011554 Hydroxymethylglutaryl-CoA synthase, prokaryotic CFE88_RS11535 IPR016039 Thiolase-like CFE88_RS11535 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain CFE88_RS11540 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type CFE88_RS11540 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily CFE88_RS11540 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily CFE88_RS11540 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site CFE88_RS11540 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II CFE88_RS11540 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily CFE88_RS11545 IPR007921 CHAP domain CFE88_RS11545 IPR038765 Papain-like cysteine peptidase superfamily CFE88_RS11555 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11555 IPR000847 Transcription regulator HTH, LysR CFE88_RS11555 IPR005119 LysR, substrate-binding CFE88_RS11555 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS11555 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain CFE88_RS11560 IPR023760 Holin-like protein CidA CFE88_RS11560 IPR005538 LrgA/CidA family CFE88_RS11565 IPR007300 CidB/LrgB family CFE88_RS11570 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11570 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS11570 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS11570 IPR000399 TPP-binding enzyme, conserved site CFE88_RS11570 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS11570 IPR029035 DHS-like NAD/FAD-binding domain superfamily CFE88_RS11575 IPR011299 PTS system glucose-specific IIBC component CFE88_RS11575 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS11575 IPR013013 Phosphotransferase system, EIIC component, type 1 CFE88_RS11575 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CFE88_RS11575 IPR011055 Duplicated hybrid motif CFE88_RS11575 IPR036878 Glucose permease domain IIB CFE88_RS11575 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS11575 IPR003352 Phosphotransferase system, EIIC CFE88_RS11585 IPR003675 CAAX prenyl protease 2 CFE88_RS11590 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11590 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS11590 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS11590 IPR027399 Alcohol dehydrogenase GroES-associated CFE88_RS11590 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS11590 IPR011032 GroES-like superfamily CFE88_RS11595 IPR036249 Thioredoxin-like superfamily CFE88_RS11595 IPR013766 Thioredoxin domain CFE88_RS11600 IPR019264 Domain of unknown function DUF2179 CFE88_RS11600 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS11600 IPR003740 Uncharacterised membrane protein YitT CFE88_RS11605 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11605 IPR013094 Alpha/beta hydrolase fold-3 CFE88_RS11615 IPR036565 Mur-like, catalytic domain superfamily CFE88_RS11615 IPR013221 Mur ligase, central CFE88_RS11615 IPR008337 Capsule biosynthesis protein CapB CFE88_RS11620 IPR008338 Capsule biosynthesis protein CapC CFE88_RS11625 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11625 IPR019079 Capsule synthesis protein, CapA CFE88_RS11635 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS11640 IPR010651 Sugar transport protein CFE88_RS11645 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU CFE88_RS11645 IPR023750 RbsD-like superfamily CFE88_RS11645 IPR023064 D-ribose pyranase CFE88_RS11650 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS11650 IPR011877 Ribokinase CFE88_RS11650 IPR011611 Carbohydrate kinase PfkB CFE88_RS11650 IPR002139 Ribokinase/fructokinase CFE88_RS11650 IPR029056 Ribokinase-like CFE88_RS11655 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS11655 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS11655 IPR006000 Xylulokinase CFE88_RS11655 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS11655 IPR000577 Carbohydrate kinase, FGGY CFE88_RS11670 IPR005131 Serine dehydratase beta chain CFE88_RS11670 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit CFE88_RS11670 IPR029009 Allosteric substrate binding domain superfamily CFE88_RS11670 IPR002912 ACT domain CFE88_RS11675 IPR005130 Serine dehydratase-like, alpha subunit CFE88_RS11675 IPR004642 Serine dehydratase, alpha subunit CFE88_RS11685 IPR000182 GNAT domain CFE88_RS11685 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS11690 IPR005754 Sortase family CFE88_RS11690 IPR023365 Sortase domain superfamily CFE88_RS11690 IPR042007 Sortase A CFE88_RS11695 IPR023938 HMP-PP phosphatase CFE88_RS11695 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS11695 IPR036412 HAD-like superfamily CFE88_RS11695 IPR000150 Cof family CFE88_RS11700 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11700 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11700 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS11700 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS11700 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11705 IPR000415 Nitroreductase-like CFE88_RS11705 IPR029479 Nitroreductase CFE88_RS11705 IPR033878 Nitroreductase NfsB-like CFE88_RS11715 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11715 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11715 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11715 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11715 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11715 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS11720 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS11720 IPR037523 Vicinal oxygen chelate (VOC) domain CFE88_RS11720 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II CFE88_RS11720 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS11735 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11735 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11735 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11735 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11735 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11735 IPR016163 Aldehyde dehydrogenase, C-terminal CFE88_RS11740 IPR038728 Uncharacterized membrane protein YkvI CFE88_RS11755 IPR009164 Fructose-1,6-bisphosphatase class 3 CFE88_RS11760 IPR032816 SNARE associated Golgi protein CFE88_RS11765 IPR035985 Ubiquitin-activating enzyme CFE88_RS11765 IPR000594 THIF-type NAD/FAD binding fold CFE88_RS11770 IPR013785 Aldolase-type TIM barrel CFE88_RS11770 IPR033983 Thiazole synthase ThiG CFE88_RS11770 IPR008867 Thiazole synthase CFE88_RS11780 IPR006076 FAD dependent oxidoreductase CFE88_RS11780 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS11780 IPR012727 Glycine oxidase ThiO CFE88_RS11790 IPR011701 Major facilitator superfamily CFE88_RS11790 IPR020846 Major facilitator superfamily domain CFE88_RS11790 IPR036259 MFS transporter superfamily CFE88_RS11790 IPR000849 Sugar phosphate transporter CFE88_RS11805 IPR018691 Protein of unknown function DUF2188 CFE88_RS11810 IPR007685 RelA/SpoT CFE88_RS11825 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS11825 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11825 IPR000639 Epoxide hydrolase-like CFE88_RS11835 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CFE88_RS11835 IPR000551 MerR-type HTH domain CFE88_RS11835 IPR009061 Putative DNA-binding domain superfamily CFE88_RS11835 IPR012925 TipAS antibiotic-recognition domain CFE88_RS11840 IPR011701 Major facilitator superfamily CFE88_RS11840 IPR020846 Major facilitator superfamily domain CFE88_RS11840 IPR036259 MFS transporter superfamily CFE88_RS11840 IPR000849 Sugar phosphate transporter CFE88_RS11840 IPR005267 Glycerol-3-phosphate transporter CFE88_RS11840 IPR021159 Glycerate/sugar phosphate transporter, conserved site CFE88_RS11845 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS11845 IPR011711 GntR, C-terminal CFE88_RS11845 IPR000524 Transcription regulator HTH, GntR CFE88_RS11845 IPR008920 Transcription regulator FadR/GntR, C-terminal CFE88_RS11845 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS11850 IPR000577 Carbohydrate kinase, FGGY CFE88_RS11850 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS11850 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS11850 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS11850 IPR006002 Gluconate kinase CFE88_RS11855 IPR003474 Gluconate transporter CFE88_RS11860 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11860 IPR005835 Nucleotidyl transferase domain CFE88_RS11860 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CFE88_RS11865 IPR005841 Alpha-D-phosphohexomutase superfamily CFE88_RS11865 IPR016066 Alpha-D-phosphohexomutase, conserved site CFE88_RS11865 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CFE88_RS11865 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CFE88_RS11865 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CFE88_RS11865 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CFE88_RS11865 IPR005843 Alpha-D-phosphohexomutase, C-terminal CFE88_RS11865 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CFE88_RS11870 IPR001173 Glycosyltransferase 2-like CFE88_RS11870 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11875 IPR015397 Glycosyl transferase 1, domain A CFE88_RS11875 IPR001296 Glycosyl transferase, family 1 CFE88_RS11880 IPR020084 NUDIX hydrolase, conserved site CFE88_RS11880 IPR000086 NUDIX hydrolase domain CFE88_RS11880 IPR015797 NUDIX hydrolase-like domain superfamily CFE88_RS11880 IPR020476 NUDIX hydrolase CFE88_RS11885 IPR001943 UVR domain CFE88_RS11885 IPR036876 UVR domain superfamily CFE88_RS11885 IPR024759 UvrB, YAD/RRR-motif-containing domain CFE88_RS11885 IPR001650 Helicase, C-terminal CFE88_RS11885 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS11885 IPR041471 UvrB, interaction domain CFE88_RS11885 IPR004807 UvrABC system, subunit B CFE88_RS11885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11885 IPR006935 Helicase/UvrB, N-terminal CFE88_RS11900 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11900 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11905 IPR011650 Peptidase M20, dimerisation domain CFE88_RS11905 IPR036264 Bacterial exopeptidase dimerisation domain CFE88_RS11905 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS11905 IPR002933 Peptidase M20 CFE88_RS11910 IPR041108 Polyphosphate kinase, C-terminal domain 1 CFE88_RS11910 IPR025200 Polyphosphate kinase C-terminal domain 2 CFE88_RS11910 IPR036830 Polyphosphate kinase middle domain superfamily CFE88_RS11910 IPR003414 Polyphosphate kinase CFE88_RS11910 IPR036832 Polyphosphate kinase N-terminal domain superfamily CFE88_RS11910 IPR025198 Polyphosphate kinase N-terminal domain CFE88_RS11910 IPR024953 Polyphosphate kinase middle domain CFE88_RS11915 IPR003695 Ppx/GppA phosphatase CFE88_RS11920 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS11920 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11930 IPR008007 Peptidase M42 CFE88_RS11930 IPR023367 Peptidase M42, domain 2 CFE88_RS11940 IPR027283 Glutamate synthase large subunit-like protein, bacteria CFE88_RS11940 IPR013785 Aldolase-type TIM barrel CFE88_RS11940 IPR002932 Glutamate synthase domain CFE88_RS11940 IPR024188 Glutamate synthase large subunit-like protein CFE88_RS11955 IPR003593 AAA+ ATPase domain CFE88_RS11955 IPR003439 ABC transporter-like CFE88_RS11955 IPR017871 ABC transporter, conserved site CFE88_RS11955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11960 IPR005226 UPF0014 family CFE88_RS11965 IPR020846 Major facilitator superfamily domain CFE88_RS11965 IPR011701 Major facilitator superfamily CFE88_RS11965 IPR036259 MFS transporter superfamily CFE88_RS11970 IPR019819 Carboxylesterase type B, conserved site CFE88_RS11970 IPR019826 Carboxylesterase type B, active site CFE88_RS11970 IPR002018 Carboxylesterase, type B CFE88_RS11970 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11970 IPR000997 Cholinesterase CFE88_RS11975 IPR002293 Amino acid/polyamine transporter I CFE88_RS11980 IPR016786 Uncharacterised protein YdeI, bacterial CFE88_RS11980 IPR014922 Domain of unknown function DUF1801 CFE88_RS11985 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS11985 IPR036291 NAD(P)-binding domain superfamily CFE88_RS11985 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12000 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS12000 IPR013154 Alcohol dehydrogenase, N-terminal CFE88_RS12000 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS12000 IPR011032 GroES-like superfamily CFE88_RS12000 IPR036291 NAD(P)-binding domain superfamily CFE88_RS12000 IPR020843 Polyketide synthase, enoylreductase domain CFE88_RS12005 IPR000644 CBS domain CFE88_RS12005 IPR003593 AAA+ ATPase domain CFE88_RS12005 IPR005892 Glycine betaine transport ATP-binding subunit CFE88_RS12005 IPR003439 ABC transporter-like CFE88_RS12005 IPR017871 ABC transporter, conserved site CFE88_RS12005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12010 IPR035906 MetI-like superfamily CFE88_RS12010 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS12015 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS12020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS12020 IPR035906 MetI-like superfamily CFE88_RS12025 IPR007300 CidB/LrgB family CFE88_RS12025 IPR024891 Antiholin-like protein LrgB CFE88_RS12030 IPR005538 LrgA/CidA family CFE88_RS12030 IPR023736 Antiholin-like protein LrgA CFE88_RS12035 IPR007492 LytTR DNA-binding domain CFE88_RS12035 IPR011006 CheY-like superfamily CFE88_RS12035 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS12040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS12040 IPR010559 Signal transduction histidine kinase, internal region CFE88_RS12040 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CFE88_RS12040 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS12040 IPR003018 GAF domain CFE88_RS12045 IPR020846 Major facilitator superfamily domain CFE88_RS12045 IPR036259 MFS transporter superfamily CFE88_RS12045 IPR011701 Major facilitator superfamily CFE88_RS12050 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CFE88_RS12050 IPR003710 Ketopantoate reductase ApbA/PanE CFE88_RS12050 IPR013752 Ketopantoate reductase, C-terminal domain CFE88_RS12050 IPR013332 Ketopantoate reductase, N-terminal domain CFE88_RS12050 IPR036291 NAD(P)-binding domain superfamily CFE88_RS12050 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CFE88_RS12055 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS12055 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CFE88_RS12055 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CFE88_RS12060 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12060 IPR001466 Beta-lactamase-related CFE88_RS12065 IPR002293 Amino acid/polyamine transporter I CFE88_RS12070 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS12070 IPR004840 Amino acid permease, conserved site CFE88_RS12085 IPR023697 Multidrug resistance protein MdtL CFE88_RS12085 IPR036259 MFS transporter superfamily CFE88_RS12085 IPR020846 Major facilitator superfamily domain CFE88_RS12085 IPR011701 Major facilitator superfamily CFE88_RS12095 IPR018197 Glycerate kinase, restriction-enzyme-like fold CFE88_RS12095 IPR018193 Glycerate kinase, flavodoxin-like fold CFE88_RS12095 IPR004381 Glycerate kinase CFE88_RS12095 IPR036129 Glycerate kinase superfamily CFE88_RS12110 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CFE88_RS12110 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS12110 IPR002524 Cation efflux protein CFE88_RS12110 IPR027469 Cation efflux transmembrane domain superfamily CFE88_RS12115 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS12115 IPR005952 Phosphoglycerate mutase 1 CFE88_RS12115 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CFE88_RS12115 IPR029033 Histidine phosphatase superfamily CFE88_RS12125 IPR018313 Solute-binding protein family 3, conserved site CFE88_RS12125 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS12130 IPR035906 MetI-like superfamily CFE88_RS12130 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CFE88_RS12130 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CFE88_RS12135 IPR003593 AAA+ ATPase domain CFE88_RS12135 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CFE88_RS12135 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12135 IPR003439 ABC transporter-like CFE88_RS12135 IPR017871 ABC transporter, conserved site CFE88_RS12140 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CFE88_RS12140 IPR003447 FemABX peptidyl transferase CFE88_RS12140 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12160 IPR023271 Aquaporin-like CFE88_RS12160 IPR000292 Formate/nitrite transporter CFE88_RS12160 IPR024002 Formate/nitrite transporter, conserved site CFE88_RS12165 IPR000182 GNAT domain CFE88_RS12165 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12170 IPR030678 Peptide/nickel binding protein, MppA-type CFE88_RS12170 IPR000914 Solute-binding protein family 5 domain CFE88_RS12170 IPR039424 Solute-binding protein family 5 CFE88_RS12190 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB CFE88_RS12190 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CFE88_RS12190 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CFE88_RS12190 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CFE88_RS12190 IPR036188 FAD/NAD(P)-binding domain superfamily CFE88_RS12190 IPR017121 Nitrite reductase [NAD(P)H], large subunit CFE88_RS12190 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CFE88_RS12190 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal CFE88_RS12190 IPR007419 BFD-like [2Fe-2S]-binding domain CFE88_RS12190 IPR023753 FAD/NAD(P)-binding domain CFE88_RS12190 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CFE88_RS12190 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CFE88_RS12195 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CFE88_RS12195 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type CFE88_RS12195 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CFE88_RS12200 IPR000878 Tetrapyrrole methylase CFE88_RS12200 IPR035996 Tetrapyrrole methylase superfamily CFE88_RS12200 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS12200 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS12200 IPR006366 Uroporphyrin-III C-methyltransferase CFE88_RS12200 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CFE88_RS12205 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CFE88_RS12205 IPR028189 Nitrate reductase, alpha subunit, N-terminal CFE88_RS12205 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CFE88_RS12205 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CFE88_RS12205 IPR006657 Molybdopterin dinucleotide-binding domain CFE88_RS12205 IPR037943 Nitrate reductase alpha subunit-like, MopB domain CFE88_RS12205 IPR009010 Aspartate decarboxylase-like domain superfamily CFE88_RS12205 IPR006468 Nitrate reductase, alpha subunit CFE88_RS12205 IPR006656 Molybdopterin oxidoreductase CFE88_RS12210 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS12210 IPR029263 Respiratory nitrate reductase beta, C-terminal CFE88_RS12210 IPR038262 Nitrate reductase beta, C-terminal domain superfamily CFE88_RS12210 IPR006547 Nitrate reductase, beta subunit CFE88_RS12225 IPR003816 Nitrate reductase, gamma subunit CFE88_RS12225 IPR036197 NarG-like superfamily CFE88_RS12225 IPR023234 NarG-like domain CFE88_RS12235 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS12235 IPR005467 Histidine kinase domain CFE88_RS12235 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CFE88_RS12235 IPR003594 Histidine kinase/HSP90-like ATPase CFE88_RS12235 IPR017203 Signal transduction histidine kinase, NreB CFE88_RS12235 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS12240 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS12240 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS12240 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS12240 IPR011006 CheY-like superfamily CFE88_RS12245 IPR036259 MFS transporter superfamily CFE88_RS12245 IPR011701 Major facilitator superfamily CFE88_RS12245 IPR020846 Major facilitator superfamily domain CFE88_RS12250 IPR000835 MarR-type HTH domain CFE88_RS12250 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS12250 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS12265 IPR033380 Glutamate-aspartate symport protein GltP/GltT CFE88_RS12265 IPR001991 Sodium:dicarboxylate symporter CFE88_RS12265 IPR018107 Sodium:dicarboxylate symporter, conserved site CFE88_RS12265 IPR036458 Sodium:dicarboxylate symporter superfamily CFE88_RS12275 IPR012349 FMN-binding split barrel CFE88_RS12275 IPR038725 General stress protein, FMN-binding split barrel domain CFE88_RS12290 IPR010973 Phosphotransferase system, sucrose-specific IIBC component CFE88_RS12290 IPR036878 Glucose permease domain IIB CFE88_RS12290 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS12290 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS12290 IPR003352 Phosphotransferase system, EIIC CFE88_RS12290 IPR013013 Phosphotransferase system, EIIC component, type 1 CFE88_RS12350 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CFE88_RS12350 IPR009614 Toxin YoeB CFE88_RS12385 IPR009614 Toxin YoeB CFE88_RS12385 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CFE88_RS12575 IPR036259 MFS transporter superfamily CFE88_RS12575 IPR011701 Major facilitator superfamily CFE88_RS12575 IPR005829 Sugar transporter, conserved site CFE88_RS12575 IPR020846 Major facilitator superfamily domain CFE88_RS12580 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CFE88_RS12580 IPR013571 Transcription regulator QacR, C-terminal CFE88_RS12580 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS12580 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CFE88_RS12580 IPR009057 Homeobox-like domain superfamily CFE88_RS12585 IPR006118 Recombinase, conserved site CFE88_RS12585 IPR006119 Resolvase, N-terminal catalytic domain CFE88_RS12585 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CFE88_RS12585 IPR006120 Resolvase, HTH domain CFE88_RS12590 IPR009057 Homeobox-like domain superfamily CFE88_RS12590 IPR006119 Resolvase, N-terminal catalytic domain CFE88_RS12590 IPR006120 Resolvase, HTH domain CFE88_RS12590 IPR006118 Recombinase, conserved site CFE88_RS12590 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CFE88_RS12595 IPR005650 BlaI transcriptional regulatory family CFE88_RS12595 IPR036388 Winged helix-like DNA-binding domain superfamily CFE88_RS12595 IPR036390 Winged helix DNA-binding domain superfamily CFE88_RS12600 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS12600 IPR008756 Peptidase M56 CFE88_RS12600 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12605 IPR000871 Beta-lactamase, class-A CFE88_RS12605 IPR023650 Beta-lactamase, class-A active site CFE88_RS12605 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12605 IPR012640 Membrane lipoprotein, lipid attachment site CFE88_RS12620 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 IPR036291 NAD(P)-binding domain superfamily CFE88_RS12620 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS12630 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CFE88_RS12630 IPR002524 Cation efflux protein CFE88_RS12630 IPR027469 Cation efflux transmembrane domain superfamily CFE88_RS12630 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS12640 IPR038390 Metal-sensitive transcriptional repressor superfamily CFE88_RS12640 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS12645 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS12645 IPR017969 Heavy-metal-associated, conserved site CFE88_RS12645 IPR006121 Heavy metal-associated domain, HMA CFE88_RS12645 IPR018303 P-type ATPase, phosphorylation site CFE88_RS12645 IPR027256 P-type ATPase, subfamily IB CFE88_RS12645 IPR036412 HAD-like superfamily CFE88_RS12645 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS12645 IPR001757 P-type ATPase CFE88_RS12645 IPR023298 P-type ATPase, transmembrane domain superfamily CFE88_RS12645 IPR023214 HAD superfamily CFE88_RS12645 IPR008250 P-type ATPase, A domain superfamily CFE88_RS12645 IPR036163 Heavy metal-associated domain superfamily CFE88_RS12650 IPR036163 Heavy metal-associated domain superfamily CFE88_RS12650 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ CFE88_RS12650 IPR017969 Heavy-metal-associated, conserved site CFE88_RS12650 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS12650 IPR006121 Heavy metal-associated domain, HMA CFE88_RS12685 IPR003593 AAA+ ATPase domain CFE88_RS12685 IPR003439 ABC transporter-like CFE88_RS12685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12685 IPR032781 ABC-transporter extension domain CFE88_RS12695 IPR005094 Endonuclease relaxase, MobA/VirD2 CFE88_RS12720 IPR000989 Replication protein CFE88_RS12725 IPR000390 Small multidrug resistance protein family