CFE88_RS00005 IPR012533 GLE1, N-terminal, bacteria CFE88_RS00010 IPR021299 Protein of unknown function DUF2871 CFE88_RS00010 IPR023616 Cytochrome c oxidase, subunit I domain CFE88_RS00015 IPR000182 GNAT domain CFE88_RS00015 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00020 IPR011032 GroES (chaperonin 10)-like CFE88_RS00020 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00020 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS00020 IPR014188 Acrylyl-CoA reductase AcuI CFE88_RS00020 IPR016040 NAD(P)-binding domain CFE88_RS00020 IPR020843 Polyketide synthase, enoylreductase CFE88_RS00025 IPR000182 GNAT domain CFE88_RS00025 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00030 IPR001173 Glycosyltransferase 2-like CFE88_RS00030 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS00030 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00040 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS00040 IPR016993 Predicted glycerophosphotransferase, SA2157 type CFE88_RS00045 IPR003804 L-lactate permease CFE88_RS00050 IPR001296 Glycosyl transferase, family 1 CFE88_RS00055 IPR006231 Malate:quinone-oxidoreductase CFE88_RS00055 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS00060 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00060 IPR003660 HAMP linker domain CFE88_RS00060 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS00065 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS00065 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS00065 IPR011006 CheY-like superfamily CFE88_RS00065 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00070 IPR003838 Permease FtsX-like CFE88_RS00075 IPR003439 ABC transporter-like CFE88_RS00075 IPR003593 AAA+ ATPase domain CFE88_RS00075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00080 IPR003848 Domain of unknown function DUF218 CFE88_RS00080 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS00085 IPR000835 MarR-type HTH domain CFE88_RS00085 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00090 IPR023599 Membrane-associated protein TcaA CFE88_RS00090 IPR026870 Zinc-ribbon domain CFE88_RS00095 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG CFE88_RS00095 IPR004812 Drug resistance transporter Bcr/CmlA subfamily CFE88_RS00095 IPR011701 Major facilitator superfamily CFE88_RS00095 IPR020846 Major facilitator superfamily domain CFE88_RS00100 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS00100 IPR009057 Homeodomain-like CFE88_RS00105 IPR011053 Single hybrid motif CFE88_RS00110 IPR004638 Drug resistance transporter EmrB/QacA subfamily CFE88_RS00110 IPR011701 Major facilitator superfamily CFE88_RS00110 IPR020846 Major facilitator superfamily domain CFE88_RS00125 IPR013094 Alpha/beta hydrolase fold-3 CFE88_RS00125 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00135 IPR029069 HotDog domain CFE88_RS00145 IPR000262 FMN-dependent dehydrogenase CFE88_RS00145 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent CFE88_RS00145 IPR013785 Aldolase-type TIM barrel CFE88_RS00150 IPR004445 Sodium/glutamate symporter CFE88_RS00155 IPR005149 Transcription regulator PadR N-terminal CFE88_RS00155 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00160 IPR012963 Protein of unknown function DUF1700 CFE88_RS00165 IPR025164 Domain of unknown function DUF4097 CFE88_RS00170 IPR003180 Methylpurine-DNA glycosylase (MPG) CFE88_RS00170 IPR011034 Formyl transferase, C-terminal-like CFE88_RS00175 IPR008523 Lactobacillus phage LBR48, DUF805 CFE88_RS00180 IPR000577 CFE88_RS00180 CFE88_RS00180 IPR005929 L-ribulokinase CFE88_RS00180 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS00180 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS00185 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase CFE88_RS00185 IPR011013 Galactose mutarotase-like domain CFE88_RS00185 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup CFE88_RS00190 IPR005302 Molybdenum cofactor sulfurase, C-terminal CFE88_RS00190 IPR011037 Pyruvate kinase-like, insert domain CFE88_RS00195 IPR004788 Ribose 5-phosphate isomerase, type A CFE88_RS00195 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup CFE88_RS00205 IPR003675 CAAX amino terminal protease CFE88_RS00205 IPR020846 Major facilitator superfamily domain CFE88_RS00210 IPR005923 Formiminoglutamase CFE88_RS00210 IPR006035 Ureohydrolase CFE88_RS00215 IPR002933 Peptidase M20 CFE88_RS00215 IPR011650 Peptidase M20, dimerisation domain CFE88_RS00215 IPR017439 Amidohydrolase CFE88_RS00220 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS00220 IPR016040 NAD(P)-binding domain CFE88_RS00220 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS00225 IPR002563 Flavin reductase-like, FMN-binding CFE88_RS00225 IPR012349 FMN-binding split barrel CFE88_RS00235 IPR018461 Na+/H+ antiporter, NhaC-like CFE88_RS00240 IPR013538 Activator of Hsp90 ATPase homologue 1-like CFE88_RS00240 IPR023393 START-like domain CFE88_RS00245 IPR000281 Helix-turn-helix protein RpiR CFE88_RS00245 IPR001347 Sugar isomerase (SIS) CFE88_RS00245 IPR009057 Homeodomain-like CFE88_RS00245 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00250 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS00250 IPR003352 Phosphotransferase system, EIIC CFE88_RS00250 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component CFE88_RS00250 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS00260 IPR006439 HAD hydrolase, subfamily IA CFE88_RS00260 IPR023214 HAD-like domain CFE88_RS00280 IPR002293 Amino acid/polyamine transporter I CFE88_RS00280 IPR004840 Amino acid permease, conserved site CFE88_RS00280 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS00285 IPR000281 Helix-turn-helix protein RpiR CFE88_RS00285 IPR001347 Sugar isomerase (SIS) CFE88_RS00285 IPR009057 Homeodomain-like CFE88_RS00285 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00290 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS00290 IPR003352 Phosphotransferase system, EIIC CFE88_RS00290 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS00295 IPR001347 Sugar isomerase (SIS) CFE88_RS00295 IPR005486 Glucokinase regulatory protein, conserved site CFE88_RS00295 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ CFE88_RS00300 IPR008589 Protein of unknown function DUF871, prokaryotic CFE88_RS00300 IPR013785 Aldolase-type TIM barrel CFE88_RS00300 IPR017853 Glycoside hydrolase, superfamily CFE88_RS00300 IPR029000 Cyclophilin-like domain CFE88_RS00310 IPR003675 CAAX amino terminal protease CFE88_RS00315 IPR001034 HTH DeoR N-terminal domain CFE88_RS00315 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00315 IPR013196 Helix-turn-helix, type 11 CFE88_RS00320 IPR000760 Inositol monophosphatase CFE88_RS00325 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS00330 IPR001041 2Fe-2S ferredoxin-type domain CFE88_RS00330 IPR006478 Formate dehydrogenase, alpha subunit CFE88_RS00330 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CFE88_RS00330 IPR006656 Molybdopterin oxidoreductase CFE88_RS00330 IPR006657 Molydopterin dinucleotide-binding domain CFE88_RS00330 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CFE88_RS00330 IPR009010 Aspartate decarboxylase-like domain CFE88_RS00330 IPR012675 Beta-grasp domain CFE88_RS00330 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS00330 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS00330 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CFE88_RS00330 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CFE88_RS00335 IPR012440 Protein of unknown function DUF1641 CFE88_RS00345 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS00350 IPR002938 Monooxygenase, FAD-binding CFE88_RS00350 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS00355 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS00355 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS00355 IPR016040 NAD(P)-binding domain CFE88_RS00355 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS00360 IPR000390 Small multidrug resistance protein family CFE88_RS00365 IPR000390 Small multidrug resistance protein family CFE88_RS00370 IPR007921 CHAP domain CFE88_RS00375 IPR019109 Protein of unknown function DUF4870 CFE88_RS00380 IPR003421 Opine dehydrogenase CFE88_RS00380 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS00380 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CFE88_RS00380 IPR013328 Dehydrogenase, multihelical CFE88_RS00380 IPR016040 NAD(P)-binding domain CFE88_RS00385 IPR004770 Na+/H+ antiporter NhaC CFE88_RS00385 IPR018461 Na+/H+ antiporter, NhaC-like CFE88_RS00390 IPR007921 CHAP domain CFE88_RS00395 IPR009057 Homeodomain-like CFE88_RS00395 IPR011051 RmlC-like cupin domain CFE88_RS00395 IPR014710 RmlC-like jelly roll fold CFE88_RS00395 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS00400 IPR010166 Accessory regulator, Staphylococcus CFE88_RS00400 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00410 IPR010166 Accessory regulator, Staphylococcus CFE88_RS00410 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00415 IPR002669 Urease accessory protein UreD CFE88_RS00420 IPR003495 CobW/HypB/UreG domain CFE88_RS00420 IPR004400 Urease accessory protein UreG CFE88_RS00420 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase CFE88_RS00420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00425 IPR002639 Urease accessory protein UreF CFE88_RS00430 IPR004029 UreE urease accessory, N-terminal CFE88_RS00430 IPR007864 Urease accessory protein UreE, C-terminal domain CFE88_RS00430 IPR012406 Urease accessory protein UreE CFE88_RS00435 IPR005848 Urease, alpha subunit CFE88_RS00435 IPR006680 Amidohydrolase 1 CFE88_RS00435 IPR011059 Metal-dependent hydrolase, composite domain CFE88_RS00435 IPR011612 Urease alpha-subunit, N-terminal domain CFE88_RS00435 IPR017950 Urease active site CFE88_RS00435 IPR029754 Urease nickel binding site CFE88_RS00435 IPR032466 CFE88_RS00435 CFE88_RS00440 IPR002019 Urease, beta subunit CFE88_RS00445 IPR002026 Urease, gamma/gamma-beta subunit CFE88_RS00445 IPR012010 Urease, gamma subunit CFE88_RS00450 IPR004937 Urea transporter CFE88_RS00450 IPR017807 Urea transporter, bacteria CFE88_RS00455 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CFE88_RS00455 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CFE88_RS00455 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain CFE88_RS00455 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain CFE88_RS00455 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CFE88_RS00460 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS00465 IPR003784 BioY protein CFE88_RS00470 IPR000182 GNAT domain CFE88_RS00470 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00475 IPR003786 Protein FdhD CFE88_RS00475 IPR016193 Cytidine deaminase-like CFE88_RS00480 IPR005950 Molybdenum ABC transporter, periplasmic binding protein CFE88_RS00485 IPR000515 MetI-like domain CFE88_RS00485 IPR011867 Molybdate ABC transporter, permease protein CFE88_RS00490 IPR003439 ABC transporter-like CFE88_RS00490 IPR003593 AAA+ ATPase domain CFE88_RS00490 IPR017871 ABC transporter, conserved site CFE88_RS00490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00495 IPR000594 UBA/THIF-type NAD/FAD binding fold CFE88_RS00500 IPR001453 Molybdopterin binding domain CFE88_RS00500 IPR008284 Molybdenum cofactor biosynthesis, conserved site CFE88_RS00500 IPR012245 Molybdenum cofactor biosynthesis protein MoaB CFE88_RS00505 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain CFE88_RS00505 IPR023045 Molybdenum cofactor biosynthesis C CFE88_RS00510 IPR001453 Molybdopterin binding domain CFE88_RS00510 IPR005110 MoeA, N-terminal and linker domain CFE88_RS00510 IPR005111 MoeA, C-terminal, domain IV CFE88_RS00515 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain CFE88_RS00515 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00520 IPR003448 Molybdopterin biosynthesis MoaE CFE88_RS00525 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 CFE88_RS00525 IPR010034 Molybdopterin converting factor, subunit 1 CFE88_RS00525 IPR012675 Beta-grasp domain CFE88_RS00525 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CFE88_RS00530 IPR013482 Molybdenum cofactor guanylyltransferase CFE88_RS00530 IPR025877 MobA-like NTP transferase domain CFE88_RS00530 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00535 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CFE88_RS00535 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS00535 IPR007197 Radical SAM CFE88_RS00535 IPR010505 Molybdenum cofactor synthesis C-terminal CFE88_RS00535 IPR013483 Molybdenum cofactor biosynthesis protein A CFE88_RS00535 IPR013785 Aldolase-type TIM barrel CFE88_RS00540 IPR010166 Accessory regulator, Staphylococcus CFE88_RS00540 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00545 IPR011701 Major facilitator superfamily CFE88_RS00545 IPR020846 Major facilitator superfamily domain CFE88_RS00550 IPR000835 MarR-type HTH domain CFE88_RS00550 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00555 IPR025870 Glyoxalase-like domain CFE88_RS00555 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS00560 IPR003447 FemABX peptidyl transferase CFE88_RS00560 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00565 IPR001036 Acriflavin resistance protein CFE88_RS00565 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS00580 IPR004776 Auxin efflux carrier CFE88_RS00585 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS00585 IPR016040 NAD(P)-binding domain CFE88_RS00585 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS00590 IPR010651 Sugar transport protein CFE88_RS00595 IPR003601 DNA topoisomerase, type IA, domain 2 CFE88_RS00595 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CFE88_RS00595 IPR005738 DNA topoisomerase III CFE88_RS00595 IPR006171 Toprim domain CFE88_RS00595 IPR013497 DNA topoisomerase, type IA, central CFE88_RS00595 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS00595 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS00595 IPR023406 DNA topoisomerase, type IA, active site CFE88_RS00600 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS00600 IPR026033 Purine permease PbuG-like CFE88_RS00610 IPR001848 Ribosomal protein S10 CFE88_RS00610 IPR018268 Ribosomal protein S10, conserved site CFE88_RS00610 IPR027486 Ribosomal protein S10 domain CFE88_RS00615 IPR000597 Ribosomal protein L3 CFE88_RS00615 IPR009000 Translation protein, beta-barrel domain CFE88_RS00615 IPR019926 Ribosomal protein L3, conserved site CFE88_RS00615 IPR019927 Ribosomal protein L3, bacterial/organelle-type CFE88_RS00620 IPR002136 Ribosomal protein L4/L1e CFE88_RS00620 IPR013005 Ribosomal protein L4/L1e, bacterial-type CFE88_RS00620 IPR023574 Ribosomal protein L4 domain CFE88_RS00625 IPR012678 Ribosomal protein L23/L15e core domain CFE88_RS00625 IPR013025 Ribosomal protein L25/L23 CFE88_RS00630 IPR002171 Ribosomal protein L2 CFE88_RS00630 IPR005880 Ribosomal protein L2, bacterial/organellar-type CFE88_RS00630 IPR008991 Translation protein SH3-like domain CFE88_RS00630 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00630 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS00630 IPR014726 Ribosomal protein L2, domain 3 CFE88_RS00630 IPR022666 Ribosomal Proteins L2, RNA binding domain CFE88_RS00630 IPR022669 Ribosomal protein L2, C-terminal CFE88_RS00630 IPR022671 Ribosomal protein L2, conserved site CFE88_RS00635 IPR002222 Ribosomal protein S19/S15 CFE88_RS00635 IPR005732 Ribosomal protein S19, bacterial-type CFE88_RS00635 IPR020934 Ribosomal protein S19 conserved site CFE88_RS00635 IPR023575 Ribosomal protein S19, superfamily CFE88_RS00640 IPR001063 Ribosomal protein L22/L17 CFE88_RS00640 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CFE88_RS00640 IPR018260 Ribosomal protein L22/L17, conserved site CFE88_RS00645 IPR001351 Ribosomal protein S3, C-terminal CFE88_RS00645 IPR004044 K Homology domain, type 2 CFE88_RS00645 IPR004087 K Homology domain CFE88_RS00645 IPR005704 Ribosomal protein S3, bacterial CFE88_RS00645 IPR009019 K homology domain, prokaryotic type CFE88_RS00645 IPR015946 K homology domain-like, alpha/beta CFE88_RS00645 IPR018280 Ribosomal protein S3, conserved site CFE88_RS00650 IPR000114 Ribosomal protein L16 CFE88_RS00650 IPR016180 Ribosomal protein L10e/L16 CFE88_RS00650 IPR020798 Ribosomal protein L16, conserved site CFE88_RS00655 IPR001854 Ribosomal protein L29 CFE88_RS00660 IPR000266 Ribosomal protein S17 CFE88_RS00660 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00660 IPR019979 Ribosomal protein S17, conserved site CFE88_RS00660 IPR019984 Ribosomal protein S17, bacterial-type CFE88_RS00665 IPR000218 Ribosomal protein L14b/L23e CFE88_RS00665 IPR005745 Ribosomal protein L14, bacterial-type CFE88_RS00665 IPR019972 Ribosomal protein L14 conserved site CFE88_RS00670 IPR003256 Ribosomal protein L24 CFE88_RS00670 IPR005824 KOW CFE88_RS00670 IPR005825 Ribosomal protein L24/L26, conserved site CFE88_RS00670 IPR008991 Translation protein SH3-like domain CFE88_RS00670 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS00675 IPR002132 Ribosomal protein L5 CFE88_RS00675 IPR020929 Ribosomal protein L5, conserved site CFE88_RS00675 IPR020930 Ribosomal protein L5, bacterial-type CFE88_RS00675 IPR022803 Ribosomal protein L5 domain CFE88_RS00675 IPR031309 CFE88_RS00675 CFE88_RS00675 IPR031310 CFE88_RS00675 CFE88_RS00680 IPR001209 Ribosomal protein S14 CFE88_RS00680 IPR018271 Ribosomal protein S14, conserved site CFE88_RS00680 IPR023053 Ribosomal protein S14, type Z CFE88_RS00685 IPR000630 Ribosomal protein S8 CFE88_RS00690 IPR000702 Ribosomal protein L6 CFE88_RS00690 IPR002358 Ribosomal protein L6, conserved site CFE88_RS00690 IPR019906 Ribosomal protein L6, bacterial-type CFE88_RS00690 IPR020040 Ribosomal protein L6, alpha-beta domain CFE88_RS00695 IPR004389 Ribosomal protein L18, bacterial-type CFE88_RS00695 IPR005484 Ribosomal protein L18/L5 CFE88_RS00700 IPR005324 Ribosomal protein S5, C-terminal CFE88_RS00700 IPR005712 Ribosomal protein S5, bacterial-type CFE88_RS00700 IPR013810 Ribosomal protein S5, N-terminal CFE88_RS00700 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00700 IPR018192 Ribosomal protein S5, N-terminal, conserved site CFE88_RS00700 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS00705 IPR005996 Ribosomal protein L30, bacterial-type CFE88_RS00705 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CFE88_RS00710 IPR001196 Ribosomal protein L15, conserved site CFE88_RS00710 IPR005749 Ribosomal protein L15, bacterial-type CFE88_RS00710 IPR021131 Ribosomal protein L18e/L15P CFE88_RS00710 IPR030878 CFE88_RS00710 CFE88_RS00715 IPR002208 SecY/SEC61-alpha family CFE88_RS00715 IPR023201 SecY subunit domain CFE88_RS00715 IPR026593 Protein translocase subunit SecY CFE88_RS00715 IPR030659 CFE88_RS00715 CFE88_RS00720 IPR000850 Adenylate kinase/UMP-CMP kinase CFE88_RS00720 IPR006259 Adenylate kinase subfamily CFE88_RS00720 IPR007862 Adenylate kinase, active site lid domain CFE88_RS00720 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00720 IPR033690 CFE88_RS00720 CFE88_RS00725 IPR004368 Translation initiation factor IF-1 CFE88_RS00725 IPR006196 RNA-binding domain, S1, IF1 type CFE88_RS00725 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00725 IPR022967 RNA-binding domain, S1 CFE88_RS00730 IPR000473 Ribosomal protein L36 CFE88_RS00735 IPR001892 Ribosomal protein S13 CFE88_RS00735 IPR010979 Ribosomal protein S13-like, H2TH CFE88_RS00735 IPR018269 Ribosomal protein S13, conserved site CFE88_RS00735 IPR019980 Ribosomal protein S13, bacterial-type CFE88_RS00735 IPR027437 30s ribosomal protein S13, C-terminal CFE88_RS00740 IPR001971 Ribosomal protein S11 CFE88_RS00740 IPR018102 Ribosomal S11, conserved site CFE88_RS00740 IPR019981 Ribosomal protein S11, bacterial-type CFE88_RS00745 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain CFE88_RS00745 IPR011260 RNA polymerase, alpha subunit, C-terminal CFE88_RS00745 IPR011262 DNA-directed RNA polymerase, insert domain CFE88_RS00745 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CFE88_RS00745 IPR011773 DNA-directed RNA polymerase, alpha subunit CFE88_RS00750 IPR000456 Ribosomal protein L17 CFE88_RS00755 IPR003439 ABC transporter-like CFE88_RS00755 IPR003593 AAA+ ATPase domain CFE88_RS00755 IPR017871 ABC transporter, conserved site CFE88_RS00755 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00755 IPR030947 CFE88_RS00755 CFE88_RS00760 IPR003439 ABC transporter-like CFE88_RS00760 IPR003593 AAA+ ATPase domain CFE88_RS00760 IPR017871 ABC transporter, conserved site CFE88_RS00760 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00760 IPR030946 CFE88_RS00760 CFE88_RS00765 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS00765 IPR024919 ECF transporter transmembrane protein EcfT CFE88_RS00770 IPR001406 Pseudouridine synthase I, TruA CFE88_RS00770 IPR020095 Pseudouridine synthase I, TruA, C-terminal CFE88_RS00770 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CFE88_RS00770 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS00775 IPR005822 Ribosomal protein L13 CFE88_RS00775 IPR005823 Ribosomal protein L13, bacterial-type CFE88_RS00775 IPR023563 Ribosomal protein L13, conserved site CFE88_RS00780 IPR000754 Ribosomal protein S9 CFE88_RS00780 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00780 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS00780 IPR020574 Ribosomal protein S9, conserved site CFE88_RS00780 IPR023035 Ribosomal protein S9, bacterial/plastid CFE88_RS00785 IPR003000 Sirtuin family CFE88_RS00785 IPR028628 Sirtuin, class U CFE88_RS00785 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS00790 IPR001034 HTH DeoR N-terminal domain CFE88_RS00790 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00790 IPR014036 DeoR C-terminal sensor domain CFE88_RS00790 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CFE88_RS00795 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CFE88_RS00795 IPR004783 Galactose-6-phosphate isomerase subunit LacA CFE88_RS00800 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CFE88_RS00800 IPR004784 Galactose-6-phosphate isomerase subunit LacB CFE88_RS00805 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS00805 IPR005926 Tagatose-6-phosphate kinase CFE88_RS00805 IPR011611 Carbohydrate kinase PfkB CFE88_RS00805 IPR017583 Tagatose/fructose phosphokinase CFE88_RS00805 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain CFE88_RS00805 IPR029056 Ribokinase-like CFE88_RS00810 IPR002915 DeoC/FbaB/ lacD aldolase CFE88_RS00810 IPR005927 Tagatose 1,6-diphosphate aldolase CFE88_RS00810 IPR013785 Aldolase-type TIM barrel CFE88_RS00815 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit CFE88_RS00820 IPR003352 Phosphotransferase system, EIIC CFE88_RS00820 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS00820 IPR004501 Phosphotransferase system, EIIC component, type 3 CFE88_RS00820 IPR004801 Phosphotransferase system, lactose-specific IIC component CFE88_RS00820 IPR013012 Phosphotransferase system, EIIB component, type 3 CFE88_RS00825 IPR001360 Glycoside hydrolase, family 1 CFE88_RS00825 IPR005928 6-phospho-beta-galactosidase CFE88_RS00825 IPR017853 Glycoside hydrolase, superfamily CFE88_RS00825 IPR018120 Glycoside hydrolase, family 1, active site CFE88_RS00825 IPR033132 CFE88_RS00825 CFE88_RS00830 IPR010315 Protein of unknown function DUF915, hydrolase-like CFE88_RS00830 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00835 IPR011251 Luciferase-like domain CFE88_RS00835 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS00840 IPR011032 GroES (chaperonin 10)-like CFE88_RS00840 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00840 IPR016040 NAD(P)-binding domain CFE88_RS00840 IPR020843 Polyketide synthase, enoylreductase CFE88_RS00845 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site CFE88_RS00845 IPR011032 GroES (chaperonin 10)-like CFE88_RS00845 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS00845 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS00845 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 CFE88_RS00845 IPR016040 NAD(P)-binding domain CFE88_RS00845 IPR020843 Polyketide synthase, enoylreductase CFE88_RS00855 IPR018730 Protein of unknown function DUF2273 CFE88_RS00860 IPR005531 Alkaline shock protein Asp23 CFE88_RS00865 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal CFE88_RS00865 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00870 IPR010290 Transmembrane secretion effector CFE88_RS00870 IPR020846 Major facilitator superfamily domain CFE88_RS00875 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal CFE88_RS00875 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00880 IPR001608 Alanine racemase, N-terminal CFE88_RS00880 IPR029066 PLP-binding barrel CFE88_RS00885 IPR002491 ABC transporter periplasmic binding domain CFE88_RS00890 IPR000522 ABC transporter, permease protein CFE88_RS00890 IPR029022 ABC transporter, BtuC-like CFE88_RS00890 IPR035568 CFE88_RS00890 CFE88_RS00895 IPR000522 ABC transporter, permease protein CFE88_RS00895 IPR029022 ABC transporter, BtuC-like CFE88_RS00895 IPR035568 CFE88_RS00895 CFE88_RS00900 IPR011642 Nucleoside recognition Gate CFE88_RS00905 IPR007138 Antibiotic biosynthesis monooxygenase-like domain CFE88_RS00905 IPR011008 Dimeric alpha-beta barrel CFE88_RS00905 IPR023953 Heme-degrading monooxygenase IsdG CFE88_RS00915 IPR007404 Protein of unknown function DUF457 CFE88_RS00920 IPR002618 UTP--glucose-1-phosphate uridylyltransferase family CFE88_RS00920 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00925 IPR004254 Hly-III-related CFE88_RS00925 IPR005744 HylII CFE88_RS00930 IPR011701 Major facilitator superfamily CFE88_RS00930 IPR020846 Major facilitator superfamily domain CFE88_RS00935 IPR031396 CFE88_RS00935 CFE88_RS00940 IPR004638 Drug resistance transporter EmrB/QacA subfamily CFE88_RS00940 IPR011701 Major facilitator superfamily CFE88_RS00940 IPR020846 Major facilitator superfamily domain CFE88_RS00945 IPR000808 Mrp, conserved site CFE88_RS00945 IPR019591 Mrp/NBP35 ATP-binding protein CFE88_RS00945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00945 IPR033756 CFE88_RS00945 CFE88_RS00945 IPR034904 CFE88_RS00945 CFE88_RS00995 IPR003390 DNA integrity scanning protein, DisA, N-terminal CFE88_RS00995 IPR014046 Diadenylate cyclase-like CFE88_RS00995 IPR034701 CFE88_RS00995 CFE88_RS01000 IPR012505 YbbR-like CFE88_RS01005 IPR005841 Alpha-D-phosphohexomutase superfamily CFE88_RS01005 IPR005843 Alpha-D-phosphohexomutase, C-terminal CFE88_RS01005 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CFE88_RS01005 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CFE88_RS01005 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CFE88_RS01005 IPR006352 Phosphoglucosamine mutase CFE88_RS01005 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CFE88_RS01005 IPR016066 Alpha-D-phosphohexomutase, conserved site CFE88_RS01010 IPR001347 Sugar isomerase (SIS) CFE88_RS01010 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CFE88_RS01010 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS01015 IPR000150 Cof protein CFE88_RS01015 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS01015 IPR023214 HAD-like domain CFE88_RS01025 IPR011152 Phosphoesterase MJ0912 CFE88_RS01025 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type CFE88_RS01025 IPR029052 Metallo-dependent phosphatase-like CFE88_RS01030 IPR002524 Cation efflux protein CFE88_RS01030 IPR027470 Cation efflux protein cytoplasmic domain CFE88_RS01035 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS01035 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01040 IPR016040 NAD(P)-binding domain CFE88_RS01050 IPR001250 Mannose-6-phosphate isomerase, type I CFE88_RS01050 IPR011051 RmlC-like cupin domain CFE88_RS01050 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CFE88_RS01050 IPR014710 RmlC-like jelly roll fold CFE88_RS01065 IPR002740 EVE domain CFE88_RS01065 IPR015947 PUA-like domain CFE88_RS01070 IPR007263 Protein of unknown function DUF393 CFE88_RS01075 IPR002177 DNA-binding protein Dps CFE88_RS01075 IPR008331 Ferritin/DPS protein domain CFE88_RS01075 IPR009078 Ferritin-like superfamily CFE88_RS01075 IPR012347 Ferritin-related CFE88_RS01075 IPR023188 DNA-binding protein Dps, conserved site CFE88_RS01080 IPR000845 Nucleoside phosphorylase domain CFE88_RS01080 IPR004402 Purine nucleoside phosphorylase DeoD-type CFE88_RS01080 IPR018016 Nucleoside phosphorylase, conserved site CFE88_RS01085 IPR002915 DeoC/FbaB/ lacD aldolase CFE88_RS01085 IPR011343 Deoxyribose-phosphate aldolase CFE88_RS01085 IPR013785 Aldolase-type TIM barrel CFE88_RS01085 IPR028581 Deoxyribose-phosphate aldolase type I CFE88_RS01090 IPR000053 Pyrimidine-nucleoside phosphorylase CFE88_RS01090 IPR000312 Glycosyl transferase, family 3 CFE88_RS01090 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal CFE88_RS01090 IPR017459 Glycosyl transferase family 3, N-terminal domain CFE88_RS01090 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site CFE88_RS01090 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic CFE88_RS01095 IPR006124 Metalloenzyme CFE88_RS01095 IPR010045 Phosphopentomutase CFE88_RS01095 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha CFE88_RS01095 IPR017850 Alkaline-phosphatase-like, core domain CFE88_RS01095 IPR024052 Phosphopentomutase DeoB cap domain CFE88_RS01105 IPR003815 S-ribosylhomocysteinase (LuxS) CFE88_RS01105 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS01110 IPR002933 Peptidase M20 CFE88_RS01110 IPR011650 Peptidase M20, dimerisation domain CFE88_RS01110 IPR017144 Peptidase M20A, amidohydrolase, predicted CFE88_RS01110 IPR017439 Amidohydrolase CFE88_RS01120 IPR021284 Protein of unknown function DUF2750 CFE88_RS01125 IPR004567 Type II pantothenate kinase CFE88_RS01125 IPR011602 Type II pantothenate kinase, bacterial CFE88_RS01130 IPR000182 GNAT domain CFE88_RS01130 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01135 IPR007759 DNA-directed RNA polymerase delta subunit/Asxl CFE88_RS01135 IPR029757 Probable DNA-directed RNA polymerase subunit delta CFE88_RS01140 IPR004468 CTP synthase CFE88_RS01140 IPR017456 CTP synthase, N-terminal CFE88_RS01140 IPR017926 Glutamine amidotransferase CFE88_RS01140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01140 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01145 IPR019676 Protein of unknown function DUF2529 CFE88_RS01150 IPR000771 Ketose-bisphosphate aldolase, class-II CFE88_RS01150 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 CFE88_RS01150 IPR013785 Aldolase-type TIM barrel CFE88_RS01155 IPR001986 Enolpyruvate transferase domain CFE88_RS01155 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CFE88_RS01155 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS01160 IPR015590 Aldehyde dehydrogenase domain CFE88_RS01160 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS01160 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS01160 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS01160 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS01165 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01165 IPR003593 AAA+ ATPase domain CFE88_RS01165 IPR004665 Transcription termination factor Rho CFE88_RS01165 IPR011112 Rho termination factor, N-terminal CFE88_RS01165 IPR011113 Rho termination factor, RNA-binding CFE88_RS01165 IPR011129 Cold shock protein CFE88_RS01165 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01170 IPR002150 Ribosomal protein L31 CFE88_RS01170 IPR027493 Ribosomal protein L31 type B CFE88_RS01170 IPR034704 CFE88_RS01170 CFE88_RS01175 IPR001267 Thymidine kinase CFE88_RS01175 IPR020633 Thymidine kinase, conserved site CFE88_RS01175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01180 IPR000352 Peptide chain release factor class I/class II CFE88_RS01180 IPR004373 Peptide chain release factor 1 CFE88_RS01180 IPR005139 Peptide chain release factor CFE88_RS01185 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CFE88_RS01185 IPR004556 Modification methylase HemK CFE88_RS01185 IPR007848 Methyltransferase small domain CFE88_RS01185 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CFE88_RS01185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS01195 IPR005145 Putative GTP-binding controlling metal-binding domain CFE88_RS01195 IPR006070 YrdC-like domain CFE88_RS01195 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CFE88_RS01195 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS01200 IPR017867 Protein-tyrosine phosphatase, low molecular weight CFE88_RS01200 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01205 IPR006340 Protein of unknown function DUF436 CFE88_RS01210 IPR001085 Serine hydroxymethyltransferase CFE88_RS01210 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS01210 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS01210 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS01210 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CFE88_RS01215 IPR005765 Uracil phosphoribosyl transferase CFE88_RS01215 IPR029057 Phosphoribosyltransferase-like CFE88_RS01215 IPR034332 CFE88_RS01215 CFE88_RS01220 IPR003331 UDP-N-acetylglucosamine 2-epimerase CFE88_RS01220 IPR029767 UDP-N-acetylglucosamine 2-epimerase, WecB-type CFE88_RS01225 IPR005598 ATP synthase protein I CFE88_RS01230 IPR000568 ATPase, F0 complex, subunit A CFE88_RS01230 IPR023011 ATPase, F0 complex, subunit A, active site CFE88_RS01235 IPR000454 ATPase, F0 complex, subunit C CFE88_RS01235 IPR002379 V-ATPase proteolipid subunit C-like domain CFE88_RS01235 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast CFE88_RS01235 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site CFE88_RS01240 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast CFE88_RS01240 IPR005864 ATPase, F0 complex, subunit B, bacterial CFE88_RS01240 IPR028987 F-type ATP synthase subunit B-like, membrane domain CFE88_RS01245 IPR000711 ATPase, OSCP/delta subunit CFE88_RS01245 IPR020781 ATPase, OSCP/delta subunit, conserved site CFE88_RS01245 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain CFE88_RS01250 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01250 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal CFE88_RS01250 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain CFE88_RS01250 IPR005294 ATPase, F1 complex, alpha subunit CFE88_RS01250 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CFE88_RS01250 IPR023366 ATP synthase subunit alpha-like domain CFE88_RS01250 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01255 IPR000131 ATPase, F1 complex, gamma subunit CFE88_RS01260 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CFE88_RS01260 IPR003593 AAA+ ATPase domain CFE88_RS01260 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain CFE88_RS01260 IPR005722 ATPase, F1 complex, beta subunit CFE88_RS01260 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CFE88_RS01260 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal CFE88_RS01260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01265 IPR001469 ATPase, F1 complex, delta/epsilon subunit CFE88_RS01265 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal CFE88_RS01265 IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain CFE88_RS01270 IPR009526 Protein of unknown function DUF1146 CFE88_RS01275 IPR001986 Enolpyruvate transferase domain CFE88_RS01275 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CFE88_RS01275 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS01280 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CFE88_RS01280 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CFE88_RS01280 IPR029069 HotDog domain CFE88_RS01285 IPR025573 YwpF-like protein CFE88_RS01290 IPR000424 Primosome PriB/single-strand DNA-binding CFE88_RS01290 IPR011344 Single-stranded DNA-binding protein CFE88_RS01290 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01295 IPR010618 Transglycosylase-like CFE88_RS01295 IPR023346 Lysozyme-like domain CFE88_RS01300 IPR004305 Thiaminase-2/PQQC CFE88_RS01300 IPR016084 Haem oxygenase-like, multi-helical CFE88_RS01300 IPR027574 Thiaminase II CFE88_RS01305 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CFE88_RS01305 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CFE88_RS01305 IPR029056 Ribokinase-like CFE88_RS01310 IPR000417 Hydroxyethylthiazole kinase CFE88_RS01310 IPR029056 Ribokinase-like CFE88_RS01315 IPR013785 Aldolase-type TIM barrel CFE88_RS01315 IPR022998 Thiamin phosphate synthase superfamily CFE88_RS01315 IPR034291 CFE88_RS01315 CFE88_RS01320 IPR001708 Membrane insertase OXA1/ALB3/YidC CFE88_RS01320 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CFE88_RS01320 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS01325 IPR003607 HD/PDEase domain CFE88_RS01330 IPR001736 Phospholipase D/Transphosphatidylase CFE88_RS01330 IPR022924 Cardiolipin synthase CFE88_RS01330 IPR025202 Phospholipase D-like domain CFE88_RS01330 IPR027379 Cardiolipin synthase N-terminal CFE88_RS01330 IPR030874 CFE88_RS01330 CFE88_RS01335 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS01340 IPR006121 Heavy metal-associated domain, HMA CFE88_RS01350 IPR001182 Cell cycle protein FtsW/RodA CFE88_RS01355 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CFE88_RS01355 IPR005905 D-alanine--D-alanine ligase CFE88_RS01355 IPR011095 D-alanine--D-alanine ligase, C-terminal CFE88_RS01355 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CFE88_RS01355 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS01355 IPR016185 Pre-ATP-grasp domain CFE88_RS01360 IPR000713 Mur ligase, N-terminal CFE88_RS01360 IPR004101 Mur ligase, C-terminal CFE88_RS01360 IPR005863 UDP-MurNAc-pentapeptide synthetase CFE88_RS01360 IPR013221 Mur ligase, central CFE88_RS01365 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site CFE88_RS01365 IPR001650 Helicase, C-terminal CFE88_RS01365 IPR011545 DEAD/DEAH box helicase domain CFE88_RS01365 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS01365 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01365 IPR030880 CFE88_RS01365 CFE88_RS01370 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 IPR014529 Uncharacterised conserved protein UCP026631 CFE88_RS01380 IPR005182 Domain of unknown function DUF304 CFE88_RS01385 IPR002582 Holo-[acyl carrier protein] synthase CFE88_RS01385 IPR004568 Phosphopantethiene-protein transferase domain CFE88_RS01385 IPR008278 4'-phosphopantetheinyl transferase superfamily CFE88_RS01390 IPR000821 Alanine racemase CFE88_RS01390 IPR001608 Alanine racemase, N-terminal CFE88_RS01390 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS01390 IPR011079 Alanine racemase, C-terminal CFE88_RS01390 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CFE88_RS01390 IPR029066 PLP-binding barrel CFE88_RS01400 IPR003477 mRNA interferase PemK-like protein CFE88_RS01400 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS01405 IPR001932 Protein phosphatase 2C (PP2C)-like domain CFE88_RS01405 IPR014787 Phosphoserine phosphatase RsbU, N-terminal CFE88_RS01405 IPR017944 KaiA/RbsU helical domain CFE88_RS01410 IPR002645 STAS domain CFE88_RS01410 IPR003658 Anti-sigma factor antagonist CFE88_RS01415 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01415 IPR010193 Serine-protein kinase RsbW CFE88_RS01420 IPR000943 RNA polymerase sigma-70 CFE88_RS01420 IPR007624 RNA polymerase sigma-70 region 3 CFE88_RS01420 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS01420 IPR007630 RNA polymerase sigma-70 region 4 CFE88_RS01420 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01420 IPR013324 RNA polymerase sigma factor, region 3/4 CFE88_RS01420 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS01420 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS01420 IPR014288 RNA polymerase sigma-B factor CFE88_RS01420 IPR014322 RNA polymerase sigma-B/F/G type CFE88_RS01425 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS01425 IPR006641 YqgF/RNase H-like domain CFE88_RS01425 IPR010994 RuvA domain 2-like CFE88_RS01425 IPR012337 Ribonuclease H-like domain CFE88_RS01425 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01425 IPR018974 Tex-like protein, N-terminal CFE88_RS01425 IPR022967 RNA-binding domain, S1 CFE88_RS01425 IPR023319 Tex-like protein, HTH domain CFE88_RS01425 IPR023323 Tex-like domain CFE88_RS01425 IPR032639 CFE88_RS01425 CFE88_RS01430 IPR006640 Domain of unknown function SprT-like CFE88_RS01430 IPR023524 Uncharacterised protein family SprT-like CFE88_RS01430 IPR035240 CFE88_RS01430 CFE88_RS01465 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CFE88_RS01465 IPR001721 ACT-like domain CFE88_RS01465 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS01465 IPR011820 L-threonine dehydratase biosynthetic IlvA CFE88_RS01470 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel CFE88_RS01470 IPR004431 3-isopropylmalate dehydratase, small subunit CFE88_RS01470 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS01475 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha CFE88_RS01475 IPR004430 3-isopropylmalate dehydratase, large subunit CFE88_RS01475 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CFE88_RS01475 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 CFE88_RS01475 IPR018136 Aconitase family, 4Fe-4S cluster binding site CFE88_RS01480 IPR004429 Isopropylmalate dehydrogenase CFE88_RS01480 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CFE88_RS01480 IPR024084 Isopropylmalate dehydrogenase-like domain CFE88_RS01485 IPR000891 Pyruvate carboxyltransferase CFE88_RS01485 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site CFE88_RS01485 IPR005671 2-isopropylmalate synthase, bacterial-type CFE88_RS01485 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain CFE88_RS01485 IPR013785 Aldolase-type TIM barrel CFE88_RS01490 IPR000506 Acetohydroxy acid isomeroreductase C-terminal CFE88_RS01490 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS01490 IPR013023 Acetohydroxy acid isomeroreductase CFE88_RS01490 IPR013116 Acetohydroxy acid isomeroreductase, catalytic CFE88_RS01490 IPR013328 Dehydrogenase, multihelical CFE88_RS01490 IPR014359 Ketol-acid reductoisomerase, gammaproteobacteria CFE88_RS01490 IPR016040 NAD(P)-binding domain CFE88_RS01495 IPR002912 ACT domain CFE88_RS01500 IPR000399 TPP-binding enzyme, conserved site CFE88_RS01500 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS01500 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS01500 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS01500 IPR012846 Acetolactate synthase, large subunit, biosynthetic CFE88_RS01500 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS01500 IPR029061 Thiamin diphosphate-binding fold CFE88_RS01505 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CFE88_RS01505 IPR004404 Dihydroxy-acid dehydratase CFE88_RS01505 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS01505 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CFE88_RS01510 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CFE88_RS01510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01515 IPR000905 Gcp-like domain CFE88_RS01515 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ CFE88_RS01515 IPR035569 CFE88_RS01515 CFE88_RS01520 IPR000182 GNAT domain CFE88_RS01520 IPR006464 Ribosomal-protein-alanine acetyltransferase CFE88_RS01520 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01525 IPR000905 Gcp-like domain CFE88_RS01525 IPR017860 Peptidase M22, conserved site CFE88_RS01525 IPR017861 Kae1/YgjD family CFE88_RS01525 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CFE88_RS01530 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS01530 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 IPR003439 ABC transporter-like CFE88_RS01535 IPR003593 AAA+ ATPase domain CFE88_RS01535 IPR017871 ABC transporter, conserved site CFE88_RS01535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 IPR032524 CFE88_RS01535 CFE88_RS01535 IPR032781 CFE88_RS01535 CFE88_RS01540 IPR003781 CoA-binding CFE88_RS01540 IPR009718 Rex DNA-binding, C-terminal domain CFE88_RS01540 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01540 IPR016040 NAD(P)-binding domain CFE88_RS01540 IPR022876 Redox-sensing transcriptional repressor Rex CFE88_RS01545 IPR011993 Pleckstrin homology-like domain CFE88_RS01550 IPR007272 Sulphur transport domain CFE88_RS01555 IPR001455 TusA-like domain CFE88_RS01560 IPR001905 Ammonium transporter CFE88_RS01560 IPR024041 Ammonium transporter AmtB-like domain CFE88_RS01565 IPR000843 Transcription regulator HTH, LacI CFE88_RS01565 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS01565 IPR028082 Periplasmic binding protein-like I CFE88_RS01575 IPR001362 Glycoside hydrolase, family 32 CFE88_RS01575 IPR006232 Sucrose-6-phosphate hydrolase CFE88_RS01575 IPR013148 Glycosyl hydrolase family 32, N-terminal CFE88_RS01575 IPR013189 Glycosyl hydrolase family 32, C-terminal CFE88_RS01575 IPR013320 Concanavalin A-like lectin/glucanase, subgroup CFE88_RS01575 IPR018053 Glycoside hydrolase, family 32, active site CFE88_RS01575 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain CFE88_RS01580 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS01580 IPR011611 Carbohydrate kinase PfkB CFE88_RS01580 IPR029056 Ribokinase-like CFE88_RS01585 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS01585 IPR007492 LytTR DNA-binding domain CFE88_RS01585 IPR011006 CheY-like superfamily CFE88_RS01590 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01590 IPR032834 CFE88_RS01590 CFE88_RS01595 IPR009229 Staphylococcal AgrD CFE88_RS01600 IPR006741 Accessory gene regulator B CFE88_RS01605 IPR008034 Delta-hemolysin CFE88_RS01610 IPR003010 Carbon-nitrogen hydrolase CFE88_RS01620 IPR003675 CAAX amino terminal protease CFE88_RS01625 IPR011032 GroES (chaperonin 10)-like CFE88_RS01625 IPR018369 Chaperonin Cpn10, conserved site CFE88_RS01625 IPR020818 Chaperonin Cpn10 CFE88_RS01630 IPR001844 Chaperonin Cpn60 CFE88_RS01630 IPR002423 Chaperonin Cpn60/TCP-1 CFE88_RS01630 IPR018370 Chaperonin Cpn60, conserved site CFE88_RS01630 IPR027409 GroEL-like apical domain CFE88_RS01630 IPR027413 GroEL-like equatorial domain CFE88_RS01655 IPR027579 Surface protein repeat SSSPR-51 CFE88_RS01660 IPR004839 Aminotransferase, class I/classII CFE88_RS01660 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS01660 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS01660 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS01675 IPR000524 Transcription regulator HTH, GntR CFE88_RS01675 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01680 IPR003439 ABC transporter-like CFE88_RS01680 IPR003593 AAA+ ATPase domain CFE88_RS01680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01685 IPR025699 ABC-2 membrane transporter-like CFE88_RS01690 IPR003439 ABC transporter-like CFE88_RS01690 IPR003593 AAA+ ATPase domain CFE88_RS01690 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01710 IPR012963 Protein of unknown function DUF1700 CFE88_RS01715 IPR025164 Domain of unknown function DUF4097 CFE88_RS01720 IPR005079 Peptidase C45 CFE88_RS01720 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS01730 IPR014962 YolD-like protein CFE88_RS01735 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain CFE88_RS01735 IPR015943 WD40/YVTN repeat-like-containing domain CFE88_RS01735 IPR019405 Lactonase, 7-bladed beta propeller CFE88_RS01740 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CFE88_RS01740 IPR015590 Aldehyde dehydrogenase domain CFE88_RS01740 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS01740 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS01740 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS01740 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS01745 IPR001667 DDH domain CFE88_RS01745 IPR004097 DHHA2 domain CFE88_RS01745 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable CFE88_RS01750 IPR000868 Isochorismatase-like CFE88_RS01755 IPR006626 Parallel beta-helix repeat CFE88_RS01755 IPR011050 Pectin lyase fold/virulence factor CFE88_RS01755 IPR012334 Pectin lyase fold CFE88_RS01755 IPR024535 CFE88_RS01755 CFE88_RS01760 IPR001086 Prephenate dehydratase CFE88_RS01765 IPR004030 Nitric oxide synthase, N-terminal CFE88_RS01765 IPR017142 Nitric oxide synthase, oxygenase subunit CFE88_RS01770 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal CFE88_RS01770 IPR006405 Nicotinate phosphoribosyltransferase pncB type CFE88_RS01770 IPR007229 Nicotinate phosphoribosyltransferase family CFE88_RS01775 IPR003694 NAD(+) synthetase CFE88_RS01775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS01775 IPR022310 NAD/GMP synthase CFE88_RS01775 IPR022926 NH(3)-dependent NAD(+) synthetase CFE88_RS01780 IPR019264 Domain of unknown function DUF2179 CFE88_RS01780 IPR022930 Protein of unknown function UPF0316 CFE88_RS01785 IPR025930 NETI protein CFE88_RS01790 IPR000362 Fumarate lyase family CFE88_RS01790 IPR004769 Adenylosuccinate lyase CFE88_RS01790 IPR008948 L-Aspartase-like CFE88_RS01790 IPR019468 Adenylosuccinate lyase C-terminal CFE88_RS01790 IPR020557 Fumarate lyase, conserved site CFE88_RS01790 IPR022761 Fumarate lyase, N-terminal CFE88_RS01790 IPR024083 Fumarase/histidase, N-terminal CFE88_RS01795 IPR000831 Trp repressor CFE88_RS01795 IPR010921 Trp repressor/replication initiator CFE88_RS01795 IPR013368 TrpR homologue YerC/YecD CFE88_RS01800 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase CFE88_RS01805 IPR005751 ATP-dependent DNA helicase PcrA CFE88_RS01805 IPR014017 DNA helicase, UvrD-like, C-terminal CFE88_RS01805 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01805 IPR034739 CFE88_RS01805 CFE88_RS01810 IPR001357 BRCT domain CFE88_RS01810 IPR001679 NAD-dependent DNA ligase CFE88_RS01810 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS01810 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CFE88_RS01810 IPR004150 NAD-dependent DNA ligase, OB-fold CFE88_RS01810 IPR010994 RuvA domain 2-like CFE88_RS01810 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01810 IPR013839 NAD-dependent DNA ligase, adenylation CFE88_RS01810 IPR013840 NAD-dependent DNA ligase, N-terminal CFE88_RS01810 IPR018239 NAD-dependent DNA ligase, active site CFE88_RS01810 IPR033136 CFE88_RS01810 CFE88_RS01815 IPR011426 CamS sex pheromone cAM373 CFE88_RS01820 IPR001734 Sodium/solute symporter CFE88_RS01820 IPR011851 Sodium/proline symporter CFE88_RS01825 IPR003837 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit CFE88_RS01830 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CFE88_RS01830 IPR020556 Amidase, conserved site CFE88_RS01830 IPR023631 Amidase signature domain CFE88_RS01835 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related CFE88_RS01835 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CFE88_RS01835 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CFE88_RS01835 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CFE88_RS01835 IPR018027 Asn/Gln amidotransferase CFE88_RS01835 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CFE88_RS01840 IPR001206 Diacylglycerol kinase, catalytic domain CFE88_RS01840 IPR005218 Diacylglycerol/lipid kinase CFE88_RS01840 IPR016064 ATP-NAD kinase-like domain CFE88_RS01840 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 CFE88_RS01845 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD CFE88_RS01845 IPR010280 (Uracil-5)-methyltransferase family CFE88_RS01845 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01845 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS01845 IPR030390 CFE88_RS01845 CFE88_RS01845 IPR030391 CFE88_RS01845 CFE88_RS01850 IPR021683 Protein of unknown function DUF3267 CFE88_RS01855 IPR001126 DNA-repair protein, UmuC-like CFE88_RS01855 IPR017961 DNA polymerase, Y-family, little finger domain CFE88_RS01855 IPR022880 DNA polymerase IV CFE88_RS01860 IPR006054 DNA polymerase III, epsilon subunit CFE88_RS01860 IPR012337 Ribonuclease H-like domain CFE88_RS01860 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS01865 IPR008331 Ferritin/DPS protein domain CFE88_RS01865 IPR009078 Ferritin-like superfamily CFE88_RS01865 IPR012347 Ferritin-related CFE88_RS01870 IPR013221 Mur ligase, central CFE88_RS01870 IPR013564 Domain of unknown function DUF1727 CFE88_RS01875 IPR011698 CobB/CobQ-like glutamine amidotransferase CFE88_RS01875 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01885 IPR010343 Protein of unknown function DUF939 CFE88_RS01890 IPR000994 Peptidase M24, structural domain CFE88_RS01890 IPR001714 Peptidase M24, methionine aminopeptidase CFE88_RS01890 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CFE88_RS01900 IPR016975 Cell wall-active antibiotic response protein CFE88_RS01900 IPR024425 Domain of unknown function DUF2154 CFE88_RS01905 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01905 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS01905 IPR017202 Sensor histidine kinase LiaS/VraS CFE88_RS01910 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS01910 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS01910 IPR011006 CheY-like superfamily CFE88_RS01910 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01910 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS01915 IPR017039 Virulence factor BrkB CFE88_RS01925 IPR017867 Protein-tyrosine phosphatase, low molecular weight CFE88_RS01925 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01930 IPR009507 Protein of unknown function UPF0435 CFE88_RS01935 IPR000787 Peptidase M29, aminopeptidase II CFE88_RS01935 IPR035097 CFE88_RS01935 CFE88_RS01940 IPR006683 Thioesterase superfamily CFE88_RS01940 IPR029069 HotDog domain CFE88_RS01945 IPR007197 Radical SAM CFE88_RS01945 IPR013785 Aldolase-type TIM barrel CFE88_RS01945 IPR014866 YfkB-like domain CFE88_RS01945 IPR031004 CFE88_RS01945 CFE88_RS01950 IPR023109 Integrase/recombinase, N-terminal CFE88_RS01955 IPR002818 ThiJ/PfpI CFE88_RS01955 IPR006286 Peptidase C56, PfpI CFE88_RS01955 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01960 IPR001264 Glycosyl transferase, family 51 CFE88_RS01960 IPR022978 Monofunctional glycosyl transferase CFE88_RS01960 IPR023346 Lysozyme-like domain CFE88_RS01965 IPR003783 Regulatory protein RecX CFE88_RS01965 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01970 IPR014938 Protein of unknown function DUF1811 CFE88_RS01975 IPR003439 ABC transporter-like CFE88_RS01975 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01985 IPR007404 Protein of unknown function DUF457 CFE88_RS01990 IPR003265 HhH-GPD domain CFE88_RS01990 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CFE88_RS01990 IPR004035 Endonuclease III, iron-sulphur binding site CFE88_RS01990 IPR005760 A/G-specific adenine glycosylase MutY CFE88_RS01990 IPR011257 DNA glycosylase CFE88_RS01990 IPR015797 NUDIX hydrolase domain-like CFE88_RS01990 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS01990 IPR029119 MutY, C-terminal CFE88_RS01995 IPR007295 Domain of unknown function DUF402 CFE88_RS01995 IPR016882 Uncharacterised protein family UPF0374 CFE88_RS02000 IPR003439 ABC transporter-like CFE88_RS02000 IPR003593 AAA+ ATPase domain CFE88_RS02000 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS02000 IPR017871 ABC transporter, conserved site CFE88_RS02000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02005 IPR010343 Protein of unknown function DUF939 CFE88_RS02010 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CFE88_RS02010 IPR005814 Aminotransferase class-III CFE88_RS02010 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS02010 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS02010 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02015 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CFE88_RS02015 IPR012336 Thioredoxin-like fold CFE88_RS02015 IPR024706 Peroxiredoxin, AhpC-type CFE88_RS02020 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02020 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS02020 IPR016040 NAD(P)-binding domain CFE88_RS02025 IPR002481 Ferric-uptake regulator CFE88_RS02025 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02180 IPR000126 Serine proteases, V8 family, serine active site CFE88_RS02180 IPR008256 Peptidase S1B CFE88_RS02180 IPR008353 Peptidase S1B, exfoliative toxin CFE88_RS02180 IPR009003 Trypsin-like cysteine/serine peptidase domain CFE88_RS02185 IPR003352 Phosphotransferase system, EIIC CFE88_RS02190 IPR000515 MetI-like domain CFE88_RS02190 IPR001320 Ionotropic glutamate receptor CFE88_RS02190 IPR001638 Extracellular solute-binding protein, family 3 CFE88_RS02190 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family CFE88_RS02195 IPR003439 ABC transporter-like CFE88_RS02195 IPR003593 AAA+ ATPase domain CFE88_RS02195 IPR017871 ABC transporter, conserved site CFE88_RS02195 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02195 IPR030679 CFE88_RS02195 CFE88_RS02200 IPR004453 Epoxyqueuosine reductase QueG CFE88_RS02200 IPR013542 Domain of unknown function DUF1730 CFE88_RS02200 IPR016024 Armadillo-type fold CFE88_RS02200 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS02205 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS02205 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase CFE88_RS02205 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS02205 IPR029028 Alpha/beta knot methyltransferases CFE88_RS02225 IPR000362 Fumarate lyase family CFE88_RS02225 IPR005677 Fumarate hydratase, class II CFE88_RS02225 IPR008948 L-Aspartase-like CFE88_RS02225 IPR018951 Fumarase C, C-terminal CFE88_RS02225 IPR020557 Fumarate lyase, conserved site CFE88_RS02225 IPR022761 Fumarate lyase, N-terminal CFE88_RS02225 IPR024083 Fumarase/histidase, N-terminal CFE88_RS02230 IPR025668 Transposase DDE domain CFE88_RS02235 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F CFE88_RS02235 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS02240 IPR003018 GAF domain CFE88_RS02240 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02240 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS02240 IPR029016 GAF domain-like CFE88_RS02245 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS02245 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS02245 IPR011006 CheY-like superfamily CFE88_RS02245 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02245 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02250 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS02250 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS02255 IPR007383 Protein of unknown function DUF445 CFE88_RS02255 IPR016991 Protein of unknown function UCP032178 CFE88_RS02260 IPR010368 Protein of unknown function DUF964 CFE88_RS02260 IPR023378 YheA/YmcA-like domain CFE88_RS02265 IPR004843 Calcineurin-like phosphoesterase domain, apaH type CFE88_RS02265 IPR014576 Predicted phosphoesterase, YhaO type CFE88_RS02265 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02270 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02275 IPR003607 HD/PDEase domain CFE88_RS02275 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS02275 IPR006674 HD domain CFE88_RS02275 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02285 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CFE88_RS02285 IPR023059 Foldase protein PrsA CFE88_RS02285 IPR027304 Trigger factor/SurA domain CFE88_RS02290 IPR021683 Protein of unknown function DUF3267 CFE88_RS02300 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 IPR011146 HIT-like domain CFE88_RS02300 IPR019808 Histidine triad, conserved site CFE88_RS02305 IPR003439 ABC transporter-like CFE88_RS02305 IPR003593 AAA+ ATPase domain CFE88_RS02305 IPR017871 ABC transporter, conserved site CFE88_RS02305 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02310 IPR010288 Bacterial ABC transporter EcsB CFE88_RS02315 IPR004676 Cadmium resistance transporter CFE88_RS02320 IPR011008 Dimeric alpha-beta barrel CFE88_RS02325 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CFE88_RS02325 IPR006361 Uroporphyrinogen decarboxylase HemE CFE88_RS02330 IPR001015 Ferrochelatase CFE88_RS02330 IPR019772 Ferrochelatase, active site CFE88_RS02335 IPR002937 Amine oxidase CFE88_RS02335 IPR004572 Protoporphyrinogen oxidase CFE88_RS02335 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS02340 IPR010662 Putative hydrolase RBBP9/YdeN CFE88_RS02340 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02395 IPR011434 Domain of unknown function DUF1535 CFE88_RS02405 IPR000873 AMP-dependent synthetase/ligase CFE88_RS02405 IPR010192 2-succinylbenzoate--CoA ligase CFE88_RS02405 IPR025110 AMP-binding enzyme C-terminal domain CFE88_RS02410 IPR010197 O-succinylbenzoate synthase, low GC Gram-positive bacteria-type CFE88_RS02410 IPR029017 Enolase N-terminal domain-like CFE88_RS02410 IPR029065 Enolase C-terminal domain-like CFE88_RS02415 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02420 IPR000086 NUDIX hydrolase domain CFE88_RS02420 IPR014078 Nucleoside triphosphatase YtkD CFE88_RS02420 IPR015797 NUDIX hydrolase domain-like CFE88_RS02420 IPR020084 NUDIX hydrolase, conserved site CFE88_RS02425 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain CFE88_RS02425 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain CFE88_RS02425 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02430 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising CFE88_RS02430 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal CFE88_RS02430 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal CFE88_RS02430 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site CFE88_RS02435 IPR002133 S-adenosylmethionine synthetase CFE88_RS02435 IPR022628 S-adenosylmethionine synthetase, N-terminal CFE88_RS02435 IPR022629 S-adenosylmethionine synthetase, central domain CFE88_RS02435 IPR022630 S-adenosylmethionine synthetase, C-terminal CFE88_RS02435 IPR022631 S-adenosylmethionine synthetase, conserved site CFE88_RS02435 IPR022636 S-adenosylmethionine synthetase superfamily CFE88_RS02445 IPR018170 Aldo/keto reductase, conserved site CFE88_RS02445 IPR020471 Aldo/keto reductase subgroup CFE88_RS02445 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS02450 IPR003691 Putative fluoride ion transporter CrcB CFE88_RS02455 IPR003691 Putative fluoride ion transporter CrcB CFE88_RS02465 IPR001585 Transaldolase CFE88_RS02465 IPR011861 Transaldolase, Staphylococcus-type CFE88_RS02465 IPR013785 Aldolase-type TIM barrel CFE88_RS02475 IPR010461 Competence protein ComK CFE88_RS02480 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS02480 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS02480 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02480 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS02480 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS02480 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02495 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS02500 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS02505 IPR002125 CMP/dCMP deaminase, zinc-binding CFE88_RS02505 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CFE88_RS02505 IPR004794 Riboflavin biosynthesis protein RibD CFE88_RS02505 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS02505 IPR016193 Cytidine deaminase-like CFE88_RS02505 IPR024072 Dihydrofolate reductase-like domain CFE88_RS02510 IPR001783 Lumazine-binding protein CFE88_RS02510 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS02510 IPR023366 ATP synthase subunit alpha-like domain CFE88_RS02510 IPR026017 Lumazine-binding domain CFE88_RS02515 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CFE88_RS02515 IPR000926 GTP cyclohydrolase II, RibA CFE88_RS02515 IPR016299 Riboflavin biosynthesis protein RibBA CFE88_RS02515 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS02515 IPR032677 CFE88_RS02515 CFE88_RS02520 IPR002180 6,7-dimethyl-8-ribityllumazine synthase CFE88_RS02520 IPR034964 CFE88_RS02520 CFE88_RS02525 IPR002872 Proline dehydrogenase domain CFE88_RS02525 IPR008219 Proline dehydrogenase CFE88_RS02525 IPR029041 FAD-linked oxidoreductase-like CFE88_RS02530 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS02530 IPR022742 Putative lysophospholipase CFE88_RS02530 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02535 IPR000835 MarR-type HTH domain CFE88_RS02535 IPR010166 Accessory regulator, Staphylococcus CFE88_RS02535 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02535 IPR016998 HTH-type transcriptional regulator Rot CFE88_RS02540 IPR010719 Putative rRNA methylase CFE88_RS02540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS02545 IPR005911 Conserved hypothetical protein CHP01212 CFE88_RS02545 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS02545 IPR007197 Radical SAM CFE88_RS02545 IPR013785 Aldolase-type TIM barrel CFE88_RS02545 IPR032432 CFE88_RS02545 CFE88_RS02550 IPR011701 Major facilitator superfamily CFE88_RS02550 IPR020846 Major facilitator superfamily domain CFE88_RS02555 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02555 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS02555 IPR002302 Leucine-tRNA ligase CFE88_RS02555 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS02555 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS02555 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS02555 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02555 IPR015413 Methionyl/Leucyl tRNA synthetase CFE88_RS02555 IPR025709 Leucyl-tRNA synthetase, editing domain CFE88_RS02560 IPR001763 Rhodanese-like domain CFE88_RS02565 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS02565 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 IPR019948 Gram-positive anchor CFE88_RS02565 IPR026359 SasC/Mrp/FmtB intercellular aggregation domain CFE88_RS02570 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CFE88_RS02570 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS02575 IPR002797 Polysaccharide biosynthesis protein CFE88_RS02575 IPR024923 Peptidoglycan biosynthesis protein, SpoVB type CFE88_RS02575 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS02580 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CFE88_RS02580 IPR002942 RNA-binding S4 domain CFE88_RS02580 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F CFE88_RS02580 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CFE88_RS02580 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS02590 IPR002933 Peptidase M20 CFE88_RS02590 IPR010964 Peptidase M20A, peptidase V-related CFE88_RS02590 IPR011650 Peptidase M20, dimerisation domain CFE88_RS02595 IPR001544 Aminotransferase, class IV CFE88_RS02595 IPR005784 D-amino acid aminotransferase CFE88_RS02595 IPR018300 Aminotransferase, class IV, conserved site CFE88_RS02600 IPR002575 Aminoglycoside phosphotransferase CFE88_RS02600 IPR011009 Protein kinase-like domain CFE88_RS02605 IPR003358 tRNA (guanine-N-7) methyltransferase CFE88_RS02605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS02610 IPR025711 PepSY domain CFE88_RS02615 IPR008007 Peptidase M42 CFE88_RS02615 IPR023367 Peptidase M42, domain 2 CFE88_RS02620 IPR012336 Thioredoxin-like fold CFE88_RS02620 IPR013766 Thioredoxin domain CFE88_RS02625 IPR010838 Protein of unknown unction DUF1444 CFE88_RS02630 IPR002547 tRNA-binding domain CFE88_RS02630 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02630 IPR027855 Domain of unknown function DUF4479 CFE88_RS02635 IPR002543 FtsK domain CFE88_RS02635 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02635 IPR018541 FtsK gamma domain CFE88_RS02635 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02640 IPR000713 Mur ligase, N-terminal CFE88_RS02640 IPR004101 Mur ligase, C-terminal CFE88_RS02640 IPR005758 UDP-N-acetylmuramate-alanine ligase CFE88_RS02640 IPR013221 Mur ligase, central CFE88_RS02645 IPR009293 Uncharacterised protein family UPF0478 CFE88_RS02655 IPR002701 Chorismate mutase CFE88_RS02655 IPR006218 DAHP synthetase I/KDSA CFE88_RS02655 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 CFE88_RS02655 IPR010954 Chorismate mutase, Firmicutes/Deinococcus CFE88_RS02655 IPR013785 Aldolase-type TIM barrel CFE88_RS02655 IPR020822 Chorismate mutase, type II CFE88_RS02660 IPR000843 Transcription regulator HTH, LacI CFE88_RS02660 IPR006377 Catabolite control protein A CFE88_RS02660 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS02660 IPR028082 Periplasmic binding protein-like I CFE88_RS02665 IPR000559 Formate-tetrahydrofolate ligase, FTHFS CFE88_RS02665 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site CFE88_RS02665 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02670 IPR001264 Glycosyl transferase, family 51 CFE88_RS02670 IPR023346 Lysozyme-like domain CFE88_RS02675 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02675 IPR002305 Aminoacyl-tRNA synthetase, class Ic CFE88_RS02675 IPR002307 Tyrosine-tRNA ligase CFE88_RS02675 IPR002942 RNA-binding S4 domain CFE88_RS02675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02675 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 CFE88_RS02680 IPR001478 PDZ domain CFE88_RS02680 IPR001940 Peptidase S1C CFE88_RS02680 IPR009003 Trypsin-like cysteine/serine peptidase domain CFE88_RS02685 IPR002123 Phospholipid/glycerol acyltransferase CFE88_RS02690 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS02690 IPR003352 Phosphotransferase system, EIIC CFE88_RS02690 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component CFE88_RS02690 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS02695 IPR023214 HAD-like domain CFE88_RS02700 IPR002912 ACT domain CFE88_RS02700 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS02700 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS02700 IPR006236 D-3-phosphoglycerate dehydrogenase CFE88_RS02700 IPR016040 NAD(P)-binding domain CFE88_RS02700 IPR029009 Allosteric substrate binding domain CFE88_RS02700 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS02705 IPR000192 Aminotransferase class V domain CFE88_RS02705 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS02705 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS02705 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02705 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site CFE88_RS02705 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CFE88_RS02710 IPR003718 OsmC/Ohr family CFE88_RS02710 IPR015946 K homology domain-like, alpha/beta CFE88_RS02710 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes CFE88_RS02715 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain CFE88_RS02715 IPR030395 CFE88_RS02715 CFE88_RS02720 IPR001912 Ribosomal protein S4/S9, N-terminal CFE88_RS02720 IPR002942 RNA-binding S4 domain CFE88_RS02720 IPR005709 Ribosomal protein S4, bacterial-type CFE88_RS02720 IPR018079 Ribosomal protein S4, conserved site CFE88_RS02730 IPR003018 GAF domain CFE88_RS02730 IPR029016 GAF domain-like CFE88_RS02735 IPR010379 Septation ring formation regulator EzrA CFE88_RS02740 IPR000192 Aminotransferase class V domain CFE88_RS02740 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS02740 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS02740 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02740 IPR016454 Cysteine desulfurase, NifS CFE88_RS02745 IPR003720 tRNA sulfurtransferase ThiI CFE88_RS02745 IPR004114 THUMP CFE88_RS02745 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02745 IPR020536 Thil, AANH domain CFE88_RS02750 IPR002781 Transmembrane protein TauE like CFE88_RS02755 IPR002065 Putative thiol peroxidase Tpx CFE88_RS02755 IPR012336 Thioredoxin-like fold CFE88_RS02755 IPR013740 Redoxin CFE88_RS02755 IPR018219 Thiol peroxidase conserved site CFE88_RS02760 IPR003356 DNA methylase, adenine-specific CFE88_RS02760 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted CFE88_RS02760 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS02765 IPR000890 Aliphatic acid kinase, short-chain CFE88_RS02765 IPR004372 Acetate/Proprionate kinase CFE88_RS02765 IPR023865 Aliphatic acid kinase, short-chain, conserved site CFE88_RS02770 IPR006015 Universal stress protein A CFE88_RS02770 IPR006016 UspA CFE88_RS02770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02775 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CFE88_RS02775 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CFE88_RS02775 IPR008141 Alanine dehydrogenase CFE88_RS02775 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 CFE88_RS02775 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CFE88_RS02775 IPR016040 NAD(P)-binding domain CFE88_RS02780 IPR000587 Creatinase, N-terminal CFE88_RS02780 IPR000994 Peptidase M24, structural domain CFE88_RS02780 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS02780 IPR028980 Creatinase/Aminopeptidase P, N-terminal CFE88_RS02780 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS02785 IPR001279 Beta-lactamase-like CFE88_RS02785 IPR022877 Protein of unknown funcion UPF0173 CFE88_RS02790 IPR006015 Universal stress protein A CFE88_RS02790 IPR006016 UspA CFE88_RS02790 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02795 IPR000524 Transcription regulator HTH, GntR CFE88_RS02795 IPR000644 CBS domain CFE88_RS02795 IPR010766 DRTGG CFE88_RS02795 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02795 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like CFE88_RS02795 IPR029069 HotDog domain CFE88_RS02800 IPR001667 DDH domain CFE88_RS02800 IPR003156 DHHA1 domain CFE88_RS02805 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS02805 IPR004013 PHP, C-terminal CFE88_RS02805 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS02805 IPR004805 DNA polymerase III, alpha subunit CFE88_RS02805 IPR011708 Bacterial DNA polymerase III, alpha subunit CFE88_RS02805 IPR016195 Polymerase/histidinol phosphatase-like CFE88_RS02805 IPR029460 DNA polymerase, helix-hairpin-helix motif CFE88_RS02810 IPR001891 Malic oxidoreductase CFE88_RS02810 IPR012301 Malic enzyme, N-terminal domain CFE88_RS02810 IPR012302 Malic enzyme, NAD-binding CFE88_RS02810 IPR015884 Malic enzyme, conserved site CFE88_RS02810 IPR016040 NAD(P)-binding domain CFE88_RS02815 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CFE88_RS02815 IPR029045 ClpP/crotonase-like domain CFE88_RS02815 IPR034733 CFE88_RS02815 CFE88_RS02820 IPR001095 Acetyl-CoA carboxylase, alpha subunit CFE88_RS02820 IPR029045 ClpP/crotonase-like domain CFE88_RS02825 IPR000023 Phosphofructokinase domain CFE88_RS02825 IPR012003 ATP-dependent phosphofructokinase, prokaryotic-type CFE88_RS02825 IPR012828 6-phosphofructokinase CFE88_RS02825 IPR015912 Phosphofructokinase, conserved site CFE88_RS02825 IPR022953 Phosphofructokinase CFE88_RS02830 IPR001697 Pyruvate kinase CFE88_RS02830 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS02830 IPR011037 Pyruvate kinase-like, insert domain CFE88_RS02830 IPR015793 Pyruvate kinase, barrel CFE88_RS02830 IPR015795 Pyruvate kinase, C-terminal CFE88_RS02830 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain CFE88_RS02835 IPR002293 Amino acid/polyamine transporter I CFE88_RS02835 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS02840 IPR002020 Citrate synthase-like CFE88_RS02840 IPR011278 2-methylcitrate synthase/citrate synthase type I CFE88_RS02840 IPR016142 Citrate synthase-like, large alpha subdomain CFE88_RS02840 IPR016143 Citrate synthase-like, small alpha subdomain CFE88_RS02840 IPR019810 Citrate synthase active site CFE88_RS02840 IPR024176 Citrate synthase, bacterial-type CFE88_RS02845 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic CFE88_RS02845 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CFE88_RS02845 IPR024084 Isopropylmalate dehydrogenase-like domain CFE88_RS02850 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS02850 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS02850 IPR011006 CheY-like superfamily CFE88_RS02850 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02850 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS02855 IPR000014 PAS domain CFE88_RS02855 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02855 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS02855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS02860 IPR001098 DNA-directed DNA polymerase, family A, palm domain CFE88_RS02860 IPR002298 DNA polymerase A CFE88_RS02860 IPR002421 5'-3' exonuclease, N-terminal CFE88_RS02860 IPR002562 3'-5' exonuclease domain CFE88_RS02860 IPR008918 Helix-hairpin-helix motif, class 2 CFE88_RS02860 IPR012337 Ribonuclease H-like domain CFE88_RS02860 IPR018320 DNA polymerase 1 CFE88_RS02860 IPR019760 DNA-directed DNA polymerase, family A, conserved site CFE88_RS02860 IPR020045 5'-3' exonuclease, C-terminal domain CFE88_RS02860 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CFE88_RS02860 IPR029060 PIN domain-like CFE88_RS02865 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase CFE88_RS02865 IPR010979 Ribosomal protein S13-like, H2TH CFE88_RS02865 IPR012319 DNA glycosylase/AP lyase, catalytic domain CFE88_RS02865 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CFE88_RS02865 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site CFE88_RS02865 IPR020629 Formamidopyrimidine-DNA glycosylase CFE88_RS02870 IPR001977 Dephospho-CoA kinase CFE88_RS02870 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02880 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CFE88_RS02880 IPR016040 NAD(P)-binding domain CFE88_RS02880 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CFE88_RS02880 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CFE88_RS02880 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CFE88_RS02880 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CFE88_RS02885 IPR003796 Ribonucleotide reductase regulator NrdR-like CFE88_RS02885 IPR005144 ATP-cone CFE88_RS02890 IPR006343 Replication protein, DnaD/DnaB domain CFE88_RS02890 IPR034829 CFE88_RS02890 CFE88_RS02895 IPR002611 IstB-like ATP-binding protein CFE88_RS02895 IPR009928 Primosomal DnaI, N-terminal CFE88_RS02895 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02900 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain CFE88_RS02900 IPR002320 Threonine-tRNA ligase, class IIa CFE88_RS02900 IPR004095 TGS CFE88_RS02900 IPR004154 Anticodon-binding CFE88_RS02900 IPR012675 Beta-grasp domain CFE88_RS02900 IPR012676 TGS-like CFE88_RS02900 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CFE88_RS02900 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain CFE88_RS02905 IPR002293 Amino acid/polyamine transporter I CFE88_RS02905 IPR004840 Amino acid permease, conserved site CFE88_RS02905 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS02910 IPR001288 Translation initiation factor 3 CFE88_RS02910 IPR019813 Translation initiation factor 3, conserved site CFE88_RS02910 IPR019814 Translation initiation factor 3, N-terminal CFE88_RS02910 IPR019815 Translation initiation factor 3, C-terminal CFE88_RS02915 IPR001706 Ribosomal protein L35, non-mitochondrial CFE88_RS02915 IPR018265 Ribosomal protein L35, conserved site CFE88_RS02915 IPR021137 Ribosomal protein L35 CFE88_RS02920 IPR005813 Ribosomal protein L20 CFE88_RS02920 IPR035566 CFE88_RS02920 CFE88_RS02925 IPR000086 NUDIX hydrolase domain CFE88_RS02925 IPR015797 NUDIX hydrolase domain-like CFE88_RS02930 IPR011990 Tetratricopeptide-like helical domain CFE88_RS02935 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain CFE88_RS02935 IPR005215 Trigger factor CFE88_RS02935 IPR008880 Trigger factor, C-terminal domain CFE88_RS02935 IPR008881 Trigger factor, ribosome-binding, bacterial CFE88_RS02935 IPR027304 Trigger factor/SurA domain CFE88_RS02940 IPR003593 AAA+ ATPase domain CFE88_RS02940 IPR003959 ATPase, AAA-type, core CFE88_RS02940 IPR004487 Clp protease, ATP-binding subunit ClpX CFE88_RS02940 IPR010603 Zinc finger, ClpX C4-type CFE88_RS02940 IPR019489 Clp ATPase, C-terminal CFE88_RS02940 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02945 IPR005225 Small GTP-binding protein domain CFE88_RS02945 IPR006073 GTP binding domain CFE88_RS02945 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CFE88_RS02945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02950 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CFE88_RS02950 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS02950 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CFE88_RS02950 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CFE88_RS02950 IPR016040 NAD(P)-binding domain CFE88_RS02950 IPR018214 Glutamyl-tRNA reductase, conserved site CFE88_RS02955 IPR002541 Cytochrome c assembly protein CFE88_RS02960 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase CFE88_RS02960 IPR022417 Porphobilinogen deaminase, N-terminal CFE88_RS02960 IPR022418 Porphobilinogen deaminase, C-terminal CFE88_RS02960 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site CFE88_RS02965 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase CFE88_RS02970 IPR001731 Porphobilinogen synthase CFE88_RS02970 IPR013785 Aldolase-type TIM barrel CFE88_RS02970 IPR030656 CFE88_RS02970 CFE88_RS02975 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CFE88_RS02975 IPR005814 Aminotransferase class-III CFE88_RS02975 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS02975 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS02975 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS02980 IPR007820 AbrB family CFE88_RS02980 IPR017516 AbrB duplication CFE88_RS02985 IPR005019 Methyladenine glycosylase CFE88_RS02985 IPR011257 DNA glycosylase CFE88_RS02990 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS02990 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS02990 IPR002303 Valine-tRNA ligase CFE88_RS02990 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS02990 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS02990 IPR010978 tRNA-binding arm CFE88_RS02990 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS02990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02990 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CFE88_RS02995 IPR001645 Folylpolyglutamate synthetase CFE88_RS02995 IPR004101 Mur ligase, C-terminal CFE88_RS02995 IPR013221 Mur ligase, central CFE88_RS03000 IPR000045 Prepilin type IV endopeptidase, peptidase domain CFE88_RS03000 IPR010627 Peptidase A24A, N-terminal CFE88_RS03005 IPR001405 RadC protein CFE88_RS03005 IPR010994 RuvA domain 2-like CFE88_RS03005 IPR020891 Uncharacterised protein family UPF0758, conserved site CFE88_RS03005 IPR025657 RadC-like JAB domain CFE88_RS03015 IPR032561 CFE88_RS03015 CFE88_RS03025 IPR007221 Rod shape-determining protein MreC CFE88_RS03030 IPR007227 Cell shape-determining protein MreD CFE88_RS03035 IPR001787 Ribosomal protein L21 CFE88_RS03035 IPR028909 Ribosomal protein L21-like CFE88_RS03040 IPR007422 Protein of unknown function DUF464 CFE88_RS03045 IPR001684 Ribosomal protein L27 CFE88_RS03045 IPR018261 Ribosomal protein L27, conserved site CFE88_RS03050 IPR006073 GTP binding domain CFE88_RS03050 IPR006074 GTP1/OBG, conserved site CFE88_RS03050 IPR006169 GTP1/OBG domain CFE88_RS03050 IPR014100 GTP-binding protein Obg/CgtA CFE88_RS03050 IPR015349 GTP-binding protein OBG, C-terminal CFE88_RS03050 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03050 IPR035101 CFE88_RS03050 CFE88_RS03055 IPR008310 UPF0735 ACT domain-containing protein CFE88_RS03060 IPR000085 Bacterial DNA recombination protein RuvA CFE88_RS03060 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS03060 IPR010994 RuvA domain 2-like CFE88_RS03060 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal CFE88_RS03060 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03060 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CFE88_RS03065 IPR003593 AAA+ ATPase domain CFE88_RS03065 IPR004605 DNA helicase, Holliday junction RuvB type CFE88_RS03065 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal CFE88_RS03065 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal CFE88_RS03065 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03070 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA CFE88_RS03075 IPR002616 tRNA-guanine(15) transglycosylase-like CFE88_RS03075 IPR004803 Queuine tRNA-ribosyltransferase CFE88_RS03080 IPR003849 Preprotein translocase YajC CFE88_RS03085 IPR005665 Protein-export membrane protein SecF, bacterial CFE88_RS03085 IPR005791 Protein translocase subunit SecD CFE88_RS03085 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CFE88_RS03085 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CFE88_RS03090 IPR001667 DDH domain CFE88_RS03090 IPR003156 DHHA1 domain CFE88_RS03090 IPR004610 Bacterial RecJ exonuclease CFE88_RS03090 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal CFE88_RS03095 IPR000836 Phosphoribosyltransferase domain CFE88_RS03095 IPR005764 Adenine phosphoribosyl transferase CFE88_RS03095 IPR029057 Phosphoribosyltransferase-like CFE88_RS03100 IPR002912 ACT domain CFE88_RS03100 IPR003607 HD/PDEase domain CFE88_RS03100 IPR004095 TGS CFE88_RS03100 IPR004811 RelA/SpoT family CFE88_RS03100 IPR007685 RelA/SpoT CFE88_RS03100 IPR012675 Beta-grasp domain CFE88_RS03100 IPR012676 TGS-like CFE88_RS03105 IPR003732 D-tyrosyl-tRNA(Tyr) deacylase CFE88_RS03105 IPR023509 D-Tyr tRNAtyr deacylase-like domain CFE88_RS03110 IPR002508 Cell wall hydrolase/autolysin, catalytic CFE88_RS03110 IPR003646 SH3-like domain, bacterial-type CFE88_RS03110 IPR017273 Probable cell wall amidase LytH CFE88_RS03115 IPR004154 Anticodon-binding CFE88_RS03115 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CFE88_RS03115 IPR015807 Histidine-tRNA ligase CFE88_RS03120 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CFE88_RS03120 IPR004115 GAD-like domain CFE88_RS03120 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS03120 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS03120 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type CFE88_RS03120 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03120 IPR029351 GAD domain CFE88_RS03135 IPR000594 UBA/THIF-type NAD/FAD binding fold CFE88_RS03140 IPR003593 AAA+ ATPase domain CFE88_RS03140 IPR003959 ATPase, AAA-type, core CFE88_RS03140 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS03140 IPR021886 MgsA AAA+ ATPase C-terminal CFE88_RS03140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03140 IPR032423 CFE88_RS03140 CFE88_RS03145 IPR000944 Transcription regulator Rrf2-like CFE88_RS03145 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03145 IPR030489 CFE88_RS03145 CFE88_RS03155 IPR011251 Luciferase-like domain CFE88_RS03155 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS03160 IPR000192 Aminotransferase class V domain CFE88_RS03160 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS03160 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS03160 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03160 IPR016454 Cysteine desulfurase, NifS CFE88_RS03165 IPR004506 tRNA-specific 2-thiouridylase CFE88_RS03165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03165 IPR023382 Adenine nucleotide alpha hydrolase-like domains CFE88_RS03170 IPR011990 Tetratricopeptide-like helical domain CFE88_RS03170 IPR019734 Tetratricopeptide repeat CFE88_RS03175 IPR003593 AAA+ ATPase domain CFE88_RS03175 IPR006345 DNA helicase, RecD/TraA type CFE88_RS03175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03175 IPR027785 UvrD-like helicase C-terminal domain CFE88_RS03175 IPR029493 RecD helicase-like helix-hairpin-helix domain CFE88_RS03180 IPR002318 Alanine-tRNA ligase, class IIc CFE88_RS03180 IPR003156 DHHA1 domain CFE88_RS03180 IPR009000 Translation protein, beta-barrel domain CFE88_RS03180 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CFE88_RS03180 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain CFE88_RS03180 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain CFE88_RS03180 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CFE88_RS03180 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CFE88_RS03185 IPR009309 Uncharacterised protein family UPF0297 CFE88_RS03190 IPR005227 Resolvase, holliday junction-type, YqgF-like CFE88_RS03190 IPR006641 YqgF/RNase H-like domain CFE88_RS03190 IPR012337 Ribonuclease H-like domain CFE88_RS03195 IPR009711 Uncharacterised protein family UPF0473 CFE88_RS03200 IPR002935 O-methyltransferase, family 3 CFE88_RS03200 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS03205 IPR001539 Peptidase U32 CFE88_RS03210 IPR001539 Peptidase U32 CFE88_RS03210 IPR013785 Aldolase-type TIM barrel CFE88_RS03210 IPR032525 CFE88_RS03210 CFE88_RS03215 IPR000764 Uridine kinase like CFE88_RS03215 IPR006083 Phosphoribulokinase/uridine kinase CFE88_RS03215 IPR026008 Uridine kinase CFE88_RS03215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03220 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CFE88_RS03220 IPR006359 Transcription elongation factor GreA CFE88_RS03220 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CFE88_RS03220 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CFE88_RS03220 IPR023459 Transcription elongation factor GreA/GreB family CFE88_RS03220 IPR028624 Transcription elongation factor GreA/GreB CFE88_RS03225 IPR003833 Allophanate hydrolase subunit 1 CFE88_RS03225 IPR010016 Sensor histidine kinase inhibitor, KipI family CFE88_RS03225 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS03225 IPR029000 Cyclophilin-like domain CFE88_RS03230 IPR003778 Allophanate hydrolase subunit 2 CFE88_RS03230 IPR029000 Cyclophilin-like domain CFE88_RS03235 IPR000089 Biotin/lipoyl attachment CFE88_RS03235 IPR011053 Single hybrid motif CFE88_RS03240 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS03240 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal CFE88_RS03240 IPR005482 Biotin carboxylase, C-terminal CFE88_RS03240 IPR011054 Rudiment single hybrid motif CFE88_RS03240 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS03240 IPR016185 Pre-ATP-grasp domain CFE88_RS03245 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF CFE88_RS03245 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CFE88_RS03250 IPR001046 NRAMP family CFE88_RS03250 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CFE88_RS03255 IPR000845 Nucleoside phosphorylase domain CFE88_RS03255 IPR010049 MTA/SAH nucleosidase CFE88_RS03260 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CFE88_RS03260 IPR010021 HAD-superfamily phosphatase, YqeG-like CFE88_RS03260 IPR023214 HAD-like domain CFE88_RS03265 IPR006073 GTP binding domain CFE88_RS03265 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH CFE88_RS03265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03270 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS03270 IPR011342 Shikimate dehydrogenase CFE88_RS03270 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CFE88_RS03270 IPR016040 NAD(P)-binding domain CFE88_RS03270 IPR022893 Shikimate, quinate/shikimate dehydrogenase CFE88_RS03275 IPR001890 RNA-binding, CRM domain CFE88_RS03275 IPR017924 RNA-binding protein YhbY CFE88_RS03280 IPR004821 Cytidyltransferase-like domain CFE88_RS03280 IPR005248 Probable nicotinate-nucleotide adenylyltransferase CFE88_RS03280 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03285 IPR003607 HD/PDEase domain CFE88_RS03285 IPR005249 Conserved hypothetical protein CHP00488 CFE88_RS03285 IPR006674 HD domain CFE88_RS03290 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CFE88_RS03295 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS03300 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS03300 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CFE88_RS03300 IPR010994 RuvA domain 2-like CFE88_RS03305 IPR002125 CMP/dCMP deaminase, zinc-binding CFE88_RS03305 IPR013404 Competence operon E, ComEB CFE88_RS03305 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS03305 IPR016193 Cytidine deaminase-like CFE88_RS03305 IPR016473 Deoxycytidylate deaminase CFE88_RS03310 IPR001279 Beta-lactamase-like CFE88_RS03310 IPR004477 ComEC/Rec2-related protein CFE88_RS03310 IPR004797 Competence protein ComEC/Rec2 CFE88_RS03315 IPR005790 DNA polymerase III, delta subunit CFE88_RS03315 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS03315 IPR010372 DNA polymerase III, delta CFE88_RS03315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03325 IPR002583 Ribosomal protein S20 CFE88_RS03330 IPR000640 Translation elongation factor EFG, V domain CFE88_RS03330 IPR000795 Elongation factor, GTP-binding domain CFE88_RS03330 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 CFE88_RS03330 IPR005225 Small GTP-binding protein domain CFE88_RS03330 IPR006297 Elongation factor 4 CFE88_RS03330 IPR013842 GTP-binding protein LepA, C-terminal CFE88_RS03330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03330 IPR031157 CFE88_RS03330 CFE88_RS03330 IPR035647 CFE88_RS03330 CFE88_RS03335 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related CFE88_RS03335 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS03335 IPR007197 Radical SAM CFE88_RS03335 IPR010723 HemN, C-terminal domain CFE88_RS03335 IPR013785 Aldolase-type TIM barrel CFE88_RS03340 IPR002571 Heat-inducible transcription repressor HrcA CFE88_RS03340 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03340 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal CFE88_RS03340 IPR029016 GAF domain-like CFE88_RS03345 IPR000740 GrpE nucleotide exchange factor CFE88_RS03345 IPR009012 GrpE nucleotide exchange factor, head CFE88_RS03345 IPR013805 GrpE nucleotide exchange factor, coiled-coil CFE88_RS03350 IPR012725 Chaperone DnaK CFE88_RS03350 IPR013126 Heat shock protein 70 family CFE88_RS03350 IPR018181 Heat shock protein 70, conserved site CFE88_RS03350 IPR029047 Heat shock protein 70kD, peptide-binding domain CFE88_RS03350 IPR029048 Heat shock protein 70kD, C-terminal domain CFE88_RS03355 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CFE88_RS03355 IPR001623 DnaJ domain CFE88_RS03355 IPR002939 Chaperone DnaJ, C-terminal CFE88_RS03355 IPR008971 HSP40/DnaJ peptide-binding CFE88_RS03355 IPR012724 Chaperone DnaJ CFE88_RS03355 IPR018253 DnaJ domain, conserved site CFE88_RS03360 IPR004498 Ribosomal protein L11 methyltransferase CFE88_RS03360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS03365 IPR006700 Ribosomal RNA small subunit methyltransferase E CFE88_RS03365 IPR015947 PUA-like domain CFE88_RS03365 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS03365 IPR029028 Alpha/beta knot methyltransferases CFE88_RS03370 IPR005839 Methylthiotransferase CFE88_RS03370 IPR006467 MiaB-like tRNA modifying enzyme CFE88_RS03370 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS03370 IPR007197 Radical SAM CFE88_RS03370 IPR013848 Methylthiotransferase, N-terminal CFE88_RS03370 IPR020612 Methylthiotransferase, conserved site CFE88_RS03370 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS03375 IPR001911 Ribosomal protein S21 CFE88_RS03375 IPR018278 Ribosomal protein S21, conserved site CFE88_RS03385 IPR022853 Uncharacterised protein family YdfA-immunity CFE88_RS03395 IPR003714 PhoH-like protein CFE88_RS03395 IPR004088 K Homology domain, type 1 CFE88_RS03395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03400 IPR002036 Endoribonuclease YbeY CFE88_RS03400 IPR020549 Endoribonuclease YbeY, conserved site CFE88_RS03400 IPR023091 Metalloprotease catalytic domain, predicted CFE88_RS03405 IPR000829 Diacylglycerol kinase, prokaryotic CFE88_RS03410 IPR002125 CMP/dCMP deaminase, zinc-binding CFE88_RS03410 IPR006262 Cytidine deaminase, homotetrameric CFE88_RS03410 IPR016193 Cytidine deaminase-like CFE88_RS03415 IPR004044 K Homology domain, type 2 CFE88_RS03415 IPR005225 Small GTP-binding protein domain CFE88_RS03415 IPR005662 GTP-binding protein Era CFE88_RS03415 IPR006073 GTP binding domain CFE88_RS03415 IPR009019 K homology domain, prokaryotic type CFE88_RS03415 IPR015946 K homology domain-like, alpha/beta CFE88_RS03415 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03420 IPR003717 Recombination protein O, RecO CFE88_RS03420 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03420 IPR022572 DNA replication/recombination mediator RecO, N-terminal CFE88_RS03425 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain CFE88_RS03425 IPR002315 Glycyl-tRNA synthetase CFE88_RS03425 IPR004154 Anticodon-binding CFE88_RS03425 IPR022961 Glycine-tRNA ligase, bacterial CFE88_RS03430 IPR000644 CBS domain CFE88_RS03430 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03430 IPR013196 Helix-turn-helix, type 11 CFE88_RS03430 IPR016842 Protein of unknown function UCP026546, HtH-CBS CFE88_RS03435 IPR005177 Bifunctional kinase-pyrophosphorylase CFE88_RS03435 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS03440 IPR002694 Zinc finger, CHC2-type CFE88_RS03440 IPR006171 Toprim domain CFE88_RS03440 IPR006295 DNA primase, DnaG CFE88_RS03440 IPR007693 DNA helicase, DnaB-like, N-terminal CFE88_RS03440 IPR013264 DNA primase, catalytic core, N-terminal CFE88_RS03440 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS03440 IPR030846 CFE88_RS03440 CFE88_RS03445 IPR000943 RNA polymerase sigma-70 CFE88_RS03445 IPR007127 RNA polymerase sigma factor 70, region 1.1 CFE88_RS03445 IPR007624 RNA polymerase sigma-70 region 3 CFE88_RS03445 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS03445 IPR007630 RNA polymerase sigma-70 region 4 CFE88_RS03445 IPR009042 RNA polymerase sigma-70 region 1.2 CFE88_RS03445 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03445 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CFE88_RS03445 IPR013324 RNA polymerase sigma factor, region 3/4 CFE88_RS03445 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS03445 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS03445 IPR028630 RNA polymerase sigma factor RpoD CFE88_RS03450 IPR006901 tRNA methyltransferase TrmK CFE88_RS03450 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS03455 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CFE88_RS03455 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS03455 IPR017221 GTP cyclohydrolase 1 type 2, bacteria CFE88_RS03460 IPR001650 Helicase, C-terminal CFE88_RS03460 IPR011545 DEAD/DEAH box helicase domain CFE88_RS03460 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS03460 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03460 IPR030881 CFE88_RS03460 CFE88_RS03465 IPR001719 AP endonuclease 2 CFE88_RS03465 IPR013022 Xylose isomerase-like, TIM barrel domain CFE88_RS03465 IPR018246 AP endonuclease 2, zinc binding site CFE88_RS03470 IPR003439 ABC transporter-like CFE88_RS03470 IPR003593 AAA+ ATPase domain CFE88_RS03470 IPR017871 ABC transporter, conserved site CFE88_RS03470 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03475 IPR001626 ABC-3 CFE88_RS03475 IPR029022 ABC transporter, BtuC-like CFE88_RS03475 IPR035568 CFE88_RS03475 CFE88_RS03480 IPR002481 Ferric-uptake regulator CFE88_RS03480 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03485 IPR001189 Manganese/iron superoxide dismutase CFE88_RS03485 IPR019831 Manganese/iron superoxide dismutase, N-terminal CFE88_RS03485 IPR019832 Manganese/iron superoxide dismutase, C-terminal CFE88_RS03485 IPR019833 Manganese/iron superoxide dismutase, binding site CFE88_RS03495 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS03495 IPR005311 Penicillin-binding protein, dimerisation domain CFE88_RS03495 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03500 IPR001705 Ribosomal protein L33 CFE88_RS03500 IPR011332 Zinc-binding ribosomal protein CFE88_RS03500 IPR018264 Ribosomal protein L33, conserved site CFE88_RS03505 IPR002698 5-formyltetrahydrofolate cyclo-ligase CFE88_RS03510 IPR011990 Tetratricopeptide-like helical domain CFE88_RS03510 IPR022764 Peptidase S54, rhomboid domain CFE88_RS03515 IPR009256 Protein of unknown function DUF910 CFE88_RS03515 IPR023164 YqgQ-like domain CFE88_RS03520 IPR000600 ROK CFE88_RS03520 IPR004654 Glucokinase ROK CFE88_RS03525 IPR002767 Protein of unknown function DUF77 CFE88_RS03525 IPR029756 MTH1187/YkoF-like CFE88_RS03530 IPR001279 Beta-lactamase-like CFE88_RS03535 IPR001482 Type II secretion system protein E CFE88_RS03535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03540 IPR003004 GspF/PilC family CFE88_RS03540 IPR018076 Type II secretion system F domain CFE88_RS03545 IPR000983 Bacterial general secretion pathway protein G-type pilin CFE88_RS03545 IPR012902 Prokaryotic N-terminal methylation site CFE88_RS03545 IPR016940 ComG operon protein C CFE88_RS03550 IPR016785 ComG operon protein 4 CFE88_RS03560 IPR016977 Competence operon G, ComGF CFE88_RS03570 IPR000623 Shikimate kinase/Threonine synthase-like 1 CFE88_RS03570 IPR023000 Shikimate kinase, conserved site CFE88_RS03570 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03570 IPR031322 CFE88_RS03570 CFE88_RS03575 IPR006222 Glycine cleavage T-protein, N-terminal CFE88_RS03575 IPR006223 Glycine cleavage system T protein CFE88_RS03575 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain CFE88_RS03575 IPR022903 Glycine cleavage system T protein, bacteria CFE88_RS03575 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CFE88_RS03580 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS03580 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS03580 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03580 IPR020581 Glycine cleavage system P protein CFE88_RS03580 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 CFE88_RS03585 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS03585 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS03585 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03585 IPR020581 Glycine cleavage system P protein CFE88_RS03585 IPR023012 Glycine cleavage system P protein, subunit 2, putative CFE88_RS03595 IPR001763 Rhodanese-like domain CFE88_RS03600 IPR004143 Biotin/lipoate A/B protein ligase CFE88_RS03600 IPR024898 Octanoyltransferase LipM CFE88_RS03615 IPR000587 Creatinase, N-terminal CFE88_RS03615 IPR000994 Peptidase M24, structural domain CFE88_RS03615 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS03615 IPR028980 Creatinase/Aminopeptidase P, N-terminal CFE88_RS03615 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS03620 IPR001059 Translation elongation factor P/YeiP, central CFE88_RS03620 IPR008991 Translation protein SH3-like domain CFE88_RS03620 IPR011768 Translation elongation factor P CFE88_RS03620 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03620 IPR013185 Translation elongation factor, KOW-like CFE88_RS03620 IPR013852 Translation elongation factor P/YeiP, conserved site CFE88_RS03620 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS03620 IPR015365 Elongation factor P, C-terminal CFE88_RS03620 IPR020599 Translation elongation factor P/YeiP CFE88_RS03625 IPR000534 Semialdehyde dehydrogenase, NAD-binding CFE88_RS03625 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 CFE88_RS03625 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS03625 IPR016040 NAD(P)-binding domain CFE88_RS03625 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site CFE88_RS03630 IPR002813 Arginine biosynthesis protein ArgJ CFE88_RS03630 IPR016117 ArgJ-like domain CFE88_RS03635 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS03635 IPR004662 Acetylglutamate kinase CFE88_RS03640 IPR004636 Acetylornithine/Succinylornithine transaminase family CFE88_RS03640 IPR005814 Aminotransferase class-III CFE88_RS03640 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS03640 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS03640 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03645 IPR000089 Biotin/lipoyl attachment CFE88_RS03645 IPR001249 Acetyl-CoA biotin carboxyl carrier CFE88_RS03645 IPR011053 Single hybrid motif CFE88_RS03650 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CFE88_RS03650 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS03650 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal CFE88_RS03650 IPR005482 Biotin carboxylase, C-terminal CFE88_RS03650 IPR011054 Rudiment single hybrid motif CFE88_RS03650 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS03650 IPR016185 Pre-ATP-grasp domain CFE88_RS03655 IPR005531 Alkaline shock protein Asp23 CFE88_RS03660 IPR006027 NusB/RsmB/TIM44 CFE88_RS03660 IPR011605 NusB antitermination factor CFE88_RS03665 IPR003753 Exonuclease VII, large subunit CFE88_RS03665 IPR020579 Exonuclease VII, large subunit, C-terminal CFE88_RS03665 IPR025824 OB-fold nucleic acid binding domain CFE88_RS03670 IPR003761 Exonuclease VII, small subunit CFE88_RS03675 IPR000092 Polyprenyl synthetase CFE88_RS03675 IPR008949 Terpenoid synthase CFE88_RS03675 IPR033749 CFE88_RS03675 CFE88_RS03680 IPR001669 Arginine repressor CFE88_RS03680 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03680 IPR020899 Arginine repressor, C-terminal CFE88_RS03680 IPR020900 Arginine repressor, DNA-binding domain CFE88_RS03680 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS03685 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS03685 IPR004604 DNA recombination/repair protein RecN CFE88_RS03685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03690 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS03690 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS03690 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS03690 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS03690 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS03695 IPR001017 Dehydrogenase, E1 component CFE88_RS03695 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03700 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS03700 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II CFE88_RS03700 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03700 IPR033248 CFE88_RS03700 CFE88_RS03705 IPR000089 Biotin/lipoyl attachment CFE88_RS03705 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS03705 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS03705 IPR004167 E3 binding CFE88_RS03705 IPR011053 Single hybrid motif CFE88_RS03710 IPR009474 Bacillithiol system oxidoreductase, YphP/YqiW CFE88_RS03715 IPR010343 Protein of unknown function DUF939 CFE88_RS03715 IPR021062 Protein of unknown function DUF939, C-terminal CFE88_RS03720 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS03720 IPR002933 Peptidase M20 CFE88_RS03720 IPR008007 Peptidase M42 CFE88_RS03720 IPR010162 Peptidase M20B, peptidase T CFE88_RS03720 IPR011650 Peptidase M20, dimerisation domain CFE88_RS03725 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating CFE88_RS03725 IPR006114 6-phosphogluconate dehydrogenase, C-terminal CFE88_RS03725 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CFE88_RS03725 IPR006183 CFE88_RS03725 CFE88_RS03725 IPR006184 6-phosphogluconate-binding site CFE88_RS03725 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS03725 IPR013328 Dehydrogenase, multihelical CFE88_RS03725 IPR016040 NAD(P)-binding domain CFE88_RS03730 IPR006046 Alpha amylase CFE88_RS03730 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CFE88_RS03730 IPR017853 Glycoside hydrolase, superfamily CFE88_RS03730 IPR032091 CFE88_RS03730 CFE88_RS03735 IPR009057 Homeodomain-like CFE88_RS03735 IPR010499 Bacterial transcription activator, effector binding CFE88_RS03735 IPR011256 Regulatory factor, effector binding domain CFE88_RS03735 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS03735 IPR029441 Integron-associated effector binding protein CFE88_RS03740 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS03740 IPR016040 NAD(P)-binding domain CFE88_RS03740 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS03740 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS03745 IPR001279 Beta-lactamase-like CFE88_RS03745 IPR013471 Ribonuclease Z/BN CFE88_RS03750 IPR000304 Pyrroline-5-carboxylate reductase CFE88_RS03750 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS03750 IPR016040 NAD(P)-binding domain CFE88_RS03750 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CFE88_RS03750 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CFE88_RS03755 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS03755 IPR016040 NAD(P)-binding domain CFE88_RS03760 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS03765 IPR000086 NUDIX hydrolase domain CFE88_RS03765 IPR015797 NUDIX hydrolase domain-like CFE88_RS03765 IPR020084 NUDIX hydrolase, conserved site CFE88_RS03765 IPR020476 NUDIX hydrolase CFE88_RS03770 IPR002481 Ferric-uptake regulator CFE88_RS03770 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03775 IPR002104 Integrase, catalytic CFE88_RS03775 IPR004107 Integrase, SAM-like, N-terminal CFE88_RS03775 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS03775 IPR011932 Tyrosine recombinase XerD CFE88_RS03775 IPR013762 Integrase-like, catalytic core CFE88_RS03775 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS03775 IPR023109 Integrase/recombinase, N-terminal CFE88_RS03780 IPR005500 Protein of unknown function DUF309 CFE88_RS03780 IPR023203 TTHA0068-like domain CFE88_RS03785 IPR003768 Prokaryotic chromosome segregation/condensation protein ScpA CFE88_RS03790 IPR005234 Chromosome segregation/condensation protein ScpB CFE88_RS03790 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03795 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CFE88_RS03795 IPR002942 RNA-binding S4 domain CFE88_RS03795 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F CFE88_RS03795 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CFE88_RS03795 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS03800 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS03800 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS03800 IPR011006 CheY-like superfamily CFE88_RS03800 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03805 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03805 IPR003660 HAMP linker domain CFE88_RS03805 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS03805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS03810 IPR024529 ECF transporter, substrate-specific component CFE88_RS03810 IPR025720 ECF transporter, Riboflavin transporter RibU CFE88_RS03820 IPR001080 3Fe-4S ferredoxin CFE88_RS03825 IPR008308 Uncharacterised conserved protein UCP021350 CFE88_RS03825 IPR029491 Helicase Helix-turn-helix domain CFE88_RS03830 IPR001650 Helicase, C-terminal CFE88_RS03830 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site CFE88_RS03830 IPR004589 DNA helicase, ATP-dependent, RecQ type CFE88_RS03830 IPR011545 DEAD/DEAH box helicase domain CFE88_RS03830 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03830 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS03830 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03830 IPR032284 CFE88_RS03830 CFE88_RS03835 IPR018392 LysM domain CFE88_RS03840 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II CFE88_RS03840 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS03840 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA CFE88_RS03845 IPR006034 Asparaginase/glutaminase CFE88_RS03845 IPR020827 Asparaginase/glutaminase, active site 1 CFE88_RS03845 IPR027473 L-asparaginase, C-terminal domain CFE88_RS03845 IPR027474 L-asparaginase, N-terminal CFE88_RS03845 IPR027475 Asparaginase/glutaminase, active site 2 CFE88_RS03850 IPR003136 Cytidylate kinase CFE88_RS03850 IPR011994 Cytidylate kinase domain CFE88_RS03850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03855 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS03855 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03855 IPR022967 RNA-binding domain, S1 CFE88_RS03860 IPR005225 Small GTP-binding protein domain CFE88_RS03860 IPR006073 GTP binding domain CFE88_RS03860 IPR015946 K homology domain-like, alpha/beta CFE88_RS03860 IPR016484 GTP-binding protein EngA CFE88_RS03860 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03860 IPR032859 CFE88_RS03860 CFE88_RS03865 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CFE88_RS03865 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CFE88_RS03865 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS03865 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CFE88_RS03865 IPR013328 Dehydrogenase, multihelical CFE88_RS03865 IPR016040 NAD(P)-binding domain CFE88_RS03870 IPR000119 Histone-like bacterial DNA-binding protein CFE88_RS03870 IPR010992 Integration host factor (IHF)-like DNA-binding domain CFE88_RS03870 IPR020816 Histone-like DNA-binding protein, conserved site CFE88_RS03880 IPR004033 UbiE/COQ5 methyltransferase CFE88_RS03880 IPR023576 UbiE/COQ5 methyltransferase, conserved site CFE88_RS03880 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS03885 IPR000092 Polyprenyl synthetase CFE88_RS03885 IPR008949 Terpenoid synthase CFE88_RS03885 IPR033749 CFE88_RS03885 CFE88_RS03890 IPR001564 Nucleoside diphosphate kinase CFE88_RS03890 IPR034907 CFE88_RS03890 CFE88_RS03895 IPR000453 Chorismate synthase CFE88_RS03895 IPR020541 Chorismate synthase, conserved site CFE88_RS03900 IPR016037 3-dehydroquinate synthase AroB CFE88_RS03900 IPR030960 CFE88_RS03900 CFE88_RS03900 IPR030963 CFE88_RS03900 CFE88_RS03905 IPR001986 Enolpyruvate transferase domain CFE88_RS03905 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CFE88_RS03905 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CFE88_RS03905 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CFE88_RS03910 IPR011990 Tetratricopeptide-like helical domain CFE88_RS03910 IPR019734 Tetratricopeptide repeat CFE88_RS03915 IPR011188 Uncharacterised protein family UPF0302 CFE88_RS03915 IPR014957 IDEAL domain CFE88_RS03915 IPR014963 Uncharacterised domain UPF0302, N-terminal CFE88_RS03920 IPR009845 Protein of unknown function DUF1405 CFE88_RS03925 IPR007395 Putative neutral zinc metallopeptidase CFE88_RS03930 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS03930 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD CFE88_RS03935 IPR001296 Glycosyl transferase, family 1 CFE88_RS03935 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA CFE88_RS03935 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain CFE88_RS03940 IPR002646 Poly A polymerase, head domain CFE88_RS03940 IPR023068 CCA-adding enzyme, firmicutes CFE88_RS03940 IPR032810 CFE88_RS03940 CFE88_RS03940 IPR032828 CFE88_RS03940 CFE88_RS03945 IPR003142 Biotin protein ligase, C-terminal CFE88_RS03945 IPR004143 Biotin/lipoate A/B protein ligase CFE88_RS03945 IPR004408 Biotin--acetyl-CoA-carboxylase ligase CFE88_RS03945 IPR008988 Transcriptional repressor, C-terminal CFE88_RS03945 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03945 IPR013196 Helix-turn-helix, type 11 CFE88_RS03945 IPR030855 CFE88_RS03945 CFE88_RS03950 IPR006054 DNA polymerase III, epsilon subunit CFE88_RS03950 IPR006310 DnaQ exonuclease/DinG helicase, predicted CFE88_RS03950 IPR006555 ATP-dependent helicase, C-terminal CFE88_RS03950 IPR006935 Helicase/UvrB domain CFE88_RS03950 IPR012337 Ribonuclease H-like domain CFE88_RS03950 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS03950 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03955 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CFE88_RS03955 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS03955 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS03955 IPR004522 Asparagine-tRNA ligase CFE88_RS03955 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03960 IPR006343 Replication protein, DnaD/DnaB domain CFE88_RS03960 IPR034829 CFE88_RS03960 CFE88_RS03965 IPR000445 Helix-hairpin-helix motif CFE88_RS03965 IPR003265 HhH-GPD domain CFE88_RS03965 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CFE88_RS03965 IPR004035 Endonuclease III, iron-sulphur binding site CFE88_RS03965 IPR004036 Endonuclease III-like, conserved site-2 CFE88_RS03965 IPR005759 Endonuclease III CFE88_RS03965 IPR011257 DNA glycosylase CFE88_RS03965 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS03975 IPR001264 Glycosyl transferase, family 51 CFE88_RS03975 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS03975 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03975 IPR023346 Lysozyme-like domain CFE88_RS03980 IPR004612 Holliday junction resolvase RecU CFE88_RS03980 IPR011335 Restriction endonuclease type II-like CFE88_RS03985 IPR014913 Protein of unknown function DUF1798 CFE88_RS03985 IPR023351 YppE-like domain CFE88_RS03990 IPR010697 Protein of unknown function DUF1273 CFE88_RS03995 IPR007793 DivIVA family CFE88_RS03995 IPR011229 Cell cycle protein GpsB CFE88_RS03995 IPR019933 DivIVA domain CFE88_RS04005 IPR000241 Putative RNA methylase domain CFE88_RS04005 IPR004114 THUMP CFE88_RS04005 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS04010 IPR016040 NAD(P)-binding domain CFE88_RS04015 IPR005225 Small GTP-binding protein domain CFE88_RS04015 IPR022812 Dynamin superfamily CFE88_RS04015 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04020 IPR002421 5'-3' exonuclease, N-terminal CFE88_RS04020 IPR008918 Helix-hairpin-helix motif, class 2 CFE88_RS04020 IPR020045 5'-3' exonuclease, C-terminal domain CFE88_RS04020 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CFE88_RS04020 IPR029060 PIN domain-like CFE88_RS04025 IPR002988 Protein G-related, albumin-binding GA module CFE88_RS04025 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS04025 IPR009063 Immunoglobulin/albumin-binding domain CFE88_RS04025 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 IPR026361 Extracellular matrix-binding protein Ebh domain CFE88_RS04030 IPR012337 Ribonuclease H-like domain CFE88_RS04035 IPR003744 Protein of unknown function DUF165 CFE88_RS04040 IPR019718 Protein of unknown function DUF2602 CFE88_RS04045 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS04050 IPR009474 Bacillithiol system oxidoreductase, YphP/YqiW CFE88_RS04055 IPR025857 MacB-like periplasmic core domain CFE88_RS04060 IPR003439 ABC transporter-like CFE88_RS04060 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04065 IPR003439 ABC transporter-like CFE88_RS04065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04070 IPR000398 Thymidylate synthase CFE88_RS04070 IPR020940 Thymidylate synthase, active site CFE88_RS04070 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CFE88_RS04075 IPR001796 Dihydrofolate reductase domain CFE88_RS04075 IPR012259 Dihydrofolate reductase CFE88_RS04075 IPR017925 Dihydrofolate reductase conserved site CFE88_RS04075 IPR024072 Dihydrofolate reductase-like domain CFE88_RS04080 IPR003797 DegV CFE88_RS04085 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS04090 IPR002579 Peptide methionine sulphoxide reductase MrsB CFE88_RS04090 IPR011057 Mss4-like CFE88_RS04095 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CFE88_RS04095 IPR011055 Duplicated hybrid motif CFE88_RS04100 IPR010673 Protein of unknown function UPF0346 CFE88_RS04100 IPR023089 YozE-like domain CFE88_RS04105 IPR001478 PDZ domain CFE88_RS04105 IPR002477 Peptidoglycan binding-like CFE88_RS04105 IPR004447 C-terminal-processing peptidase S41A CFE88_RS04105 IPR005151 Tail specific protease CFE88_RS04105 IPR029045 ClpP/crotonase-like domain CFE88_RS04115 IPR000182 GNAT domain CFE88_RS04115 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04120 IPR004276 Glycosyl transferase, family 28 CFE88_RS04120 IPR006009 N-acetylglucosaminyltransferase, MurG CFE88_RS04120 IPR007235 Glycosyl transferase, family 28, C-terminal CFE88_RS04125 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS04135 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS04135 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS04135 IPR011006 CheY-like superfamily CFE88_RS04135 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04135 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS04140 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04140 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS04140 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS04150 IPR001017 Dehydrogenase, E1 component CFE88_RS04150 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04150 IPR011603 2-oxoglutarate dehydrogenase E1 component CFE88_RS04150 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial CFE88_RS04150 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04150 IPR031717 CFE88_RS04150 CFE88_RS04155 IPR000089 Biotin/lipoyl attachment CFE88_RS04155 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS04155 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS04155 IPR004167 E3 binding CFE88_RS04155 IPR006255 Dihydrolipoamide succinyltransferase CFE88_RS04155 IPR011053 Single hybrid motif CFE88_RS04160 IPR003439 ABC transporter-like CFE88_RS04160 IPR003593 AAA+ ATPase domain CFE88_RS04160 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04175 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS04185 IPR001270 ClpA/B family CFE88_RS04185 IPR003593 AAA+ ATPase domain CFE88_RS04185 IPR011704 ATPase, dynein-related, AAA domain CFE88_RS04185 IPR013615 CbbQ/NirQ/NorQ, C-terminal CFE88_RS04185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04190 IPR002035 von Willebrand factor, type A CFE88_RS04195 IPR004685 Branched-chain amino acid transport system II carrier protein CFE88_RS04200 IPR008863 Toxic anion resistance CFE88_RS04205 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein CFE88_RS04210 IPR001792 Acylphosphatase-like domain CFE88_RS04210 IPR017968 Acylphosphatase, conserved site CFE88_RS04215 IPR010434 Protein of unknown function DUF1033 CFE88_RS04220 IPR002059 Cold-shock protein, DNA-binding CFE88_RS04220 IPR011129 Cold shock protein CFE88_RS04220 IPR012156 Cold shock, CspA CFE88_RS04220 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS04220 IPR019844 Cold-shock conserved site CFE88_RS04235 IPR000183 Ornithine/DAP/Arg decarboxylase CFE88_RS04235 IPR002986 Diaminopimelate decarboxylase, LysA CFE88_RS04235 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS04235 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CFE88_RS04235 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CFE88_RS04235 IPR029066 PLP-binding barrel CFE88_RS04240 IPR000821 Alanine racemase CFE88_RS04240 IPR001608 Alanine racemase, N-terminal CFE88_RS04240 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CFE88_RS04240 IPR011079 Alanine racemase, C-terminal CFE88_RS04240 IPR029066 PLP-binding barrel CFE88_RS04245 IPR002933 Peptidase M20 CFE88_RS04245 IPR011650 Peptidase M20, dimerisation domain CFE88_RS04245 IPR017439 Amidohydrolase CFE88_RS04250 IPR001451 Bacterial transferase hexapeptide repeat CFE88_RS04250 IPR011004 Trimeric LpxA-like CFE88_RS04250 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal CFE88_RS04250 IPR018357 Hexapeptide transferase, conserved site CFE88_RS04250 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH CFE88_RS04255 IPR000846 Dihydrodipicolinate reductase, N-terminal CFE88_RS04255 IPR016040 NAD(P)-binding domain CFE88_RS04255 IPR022663 Dihydrodipicolinate reductase, C-terminal CFE88_RS04255 IPR022664 Dihydrodipicolinate reductase, conserved site CFE88_RS04255 IPR023940 Dihydrodipicolinate reductase, bacterial CFE88_RS04260 IPR002220 DapA-like CFE88_RS04260 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CFE88_RS04260 IPR013785 Aldolase-type TIM barrel CFE88_RS04260 IPR020625 Dihydrodipicolinate synthetase, active site CFE88_RS04265 IPR000534 Semialdehyde dehydrogenase, NAD-binding CFE88_RS04265 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type CFE88_RS04265 IPR012080 Aspartate-semialdehyde dehydrogenase CFE88_RS04265 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CFE88_RS04265 IPR016040 NAD(P)-binding domain CFE88_RS04270 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04270 IPR001341 Aspartate kinase domain CFE88_RS04270 IPR005260 Aspartate kinase, monofunctional class CFE88_RS04270 IPR018042 Aspartate kinase, conserved site CFE88_RS04270 IPR027795 GATS-like ACT domain CFE88_RS04275 IPR003439 ABC transporter-like CFE88_RS04275 IPR003593 AAA+ ATPase domain CFE88_RS04275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04275 IPR032781 CFE88_RS04275 CFE88_RS04280 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04280 IPR014464 Conserved virulence factor B CFE88_RS04285 IPR011862 Phosphate binding protein CFE88_RS04285 IPR024370 PBP domain CFE88_RS04290 IPR000515 MetI-like domain CFE88_RS04290 IPR011864 Phosphate ABC transporter, permease protein PstC CFE88_RS04295 IPR000515 MetI-like domain CFE88_RS04295 IPR005672 Phosphate transport system permease protein PstA CFE88_RS04300 IPR003439 ABC transporter-like CFE88_RS04300 IPR003593 AAA+ ATPase domain CFE88_RS04300 IPR005670 Phosphate transport system permease protein 1 CFE88_RS04300 IPR017871 ABC transporter, conserved site CFE88_RS04300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04305 IPR026022 PhoU domain CFE88_RS04305 IPR028366 Phosphate transport system protein PhoU CFE88_RS04310 IPR001567 Peptidase M3A/M3B CFE88_RS04310 IPR004438 Peptidase M3B, oligoendopeptidase F CFE88_RS04310 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS04320 IPR000515 MetI-like domain CFE88_RS04325 IPR000515 MetI-like domain CFE88_RS04330 IPR003439 ABC transporter-like CFE88_RS04330 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04335 IPR003439 ABC transporter-like CFE88_RS04335 IPR003593 AAA+ ATPase domain CFE88_RS04335 IPR017871 ABC transporter, conserved site CFE88_RS04335 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04340 IPR002491 ABC transporter periplasmic binding domain CFE88_RS04345 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS04345 IPR023214 HAD-like domain CFE88_RS04350 IPR003447 FemABX peptidyl transferase CFE88_RS04350 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04355 IPR003447 FemABX peptidyl transferase CFE88_RS04355 IPR010978 tRNA-binding arm CFE88_RS04355 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04365 IPR002818 ThiJ/PfpI CFE88_RS04365 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04370 IPR002028 Tryptophan synthase, alpha chain CFE88_RS04370 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04370 IPR013785 Aldolase-type TIM barrel CFE88_RS04370 IPR018204 Tryptophan synthase, alpha chain, active site CFE88_RS04375 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04375 IPR006653 Tryptophan synthase, beta chain, conserved site CFE88_RS04375 IPR006654 Tryptophan synthase, beta chain CFE88_RS04375 IPR023026 Tryptophan synthase beta chain/beta chain-like CFE88_RS04380 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain CFE88_RS04380 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04380 IPR013785 Aldolase-type TIM barrel CFE88_RS04385 IPR001468 Indole-3-glycerol phosphate synthase, conserved site CFE88_RS04385 IPR011060 Ribulose-phosphate binding barrel CFE88_RS04385 IPR013785 Aldolase-type TIM barrel CFE88_RS04385 IPR013798 Indole-3-glycerol phosphate synthase CFE88_RS04390 IPR000312 Glycosyl transferase, family 3 CFE88_RS04390 IPR005940 Anthranilate phosphoribosyl transferase CFE88_RS04395 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CFE88_RS04395 IPR017926 Glutamine amidotransferase CFE88_RS04395 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04400 IPR005801 ADC synthase CFE88_RS04400 IPR006805 Anthranilate synthase component I, N-terminal CFE88_RS04400 IPR015890 Chorismate binding, C-terminal CFE88_RS04400 IPR019999 Anthranilate synthase component I - like CFE88_RS04405 IPR002912 ACT domain CFE88_RS04405 IPR003099 Prephenate dehydrogenase CFE88_RS04405 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS04405 IPR016040 NAD(P)-binding domain CFE88_RS04410 IPR001126 DNA-repair protein, UmuC-like CFE88_RS04410 IPR017961 DNA polymerase, Y-family, little finger domain CFE88_RS04410 IPR024728 DNA polymerase type-Y, HhH motif CFE88_RS04415 IPR004370 4-oxalocrotonate tautomerase CFE88_RS04415 IPR014347 Tautomerase/MIF superfamily CFE88_RS04415 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type CFE88_RS04420 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS04425 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS04430 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04430 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CFE88_RS04430 IPR024320 Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156 CFE88_RS04435 IPR002549 Uncharacterised protein family UPF0118 CFE88_RS04435 IPR022324 Bacilysin exporter BacE, putative CFE88_RS04440 IPR001550 Transcription antiterminator, conserved site CFE88_RS04440 IPR004341 CAT RNA-binding domain CFE88_RS04440 IPR011608 PRD domain CFE88_RS04445 IPR001463 Sodium:alanine symporter CFE88_RS04450 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CFE88_RS04450 IPR005741 DNA topoisomerase IV subunit A, Gram-positive CFE88_RS04450 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel CFE88_RS04450 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain CFE88_RS04450 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CFE88_RS04450 IPR013760 DNA topoisomerase, type IIA-like domain CFE88_RS04450 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS04450 IPR035516 CFE88_RS04450 CFE88_RS04455 IPR000565 DNA topoisomerase, type IIA, subunit B CFE88_RS04455 IPR001241 DNA topoisomerase, type IIA CFE88_RS04455 IPR002288 DNA gyrase B subunit, C-terminal CFE88_RS04455 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04455 IPR005740 DNA topoisomerase 4 subunit B, Gram-positive CFE88_RS04455 IPR006171 Toprim domain CFE88_RS04455 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CFE88_RS04455 IPR013759 DNA topoisomerase, type IIA, central domain CFE88_RS04455 IPR013760 DNA topoisomerase, type IIA-like domain CFE88_RS04455 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04455 IPR018522 DNA topoisomerase, type IIA, conserved site CFE88_RS04455 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04460 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY CFE88_RS04465 IPR000361 FeS cluster biogenesis CFE88_RS04465 IPR008326 Uncharacterised conserved protein UCP034852 CFE88_RS04470 IPR006683 Thioesterase superfamily CFE88_RS04470 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family CFE88_RS04470 IPR029069 HotDog domain CFE88_RS04475 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel CFE88_RS04475 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha CFE88_RS04475 IPR006249 Aconitate/iron regulatory protein 2 CFE88_RS04475 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS04475 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CFE88_RS04475 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 CFE88_RS04475 IPR018136 Aconitase family, 4Fe-4S cluster binding site CFE88_RS04480 IPR000060 BCCT transporter family CFE88_RS04485 IPR001185 Large-conductance mechanosensitive channel CFE88_RS04485 IPR019823 Large-conductance mechanosensitive channel, conserved site CFE88_RS04490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04495 IPR004593 Nuclease SbcCD subunit D CFE88_RS04495 IPR004843 Calcineurin-like phosphoesterase domain, apaH type CFE88_RS04495 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CFE88_RS04495 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04500 IPR009916 Protein of unknown function DUF1453 CFE88_RS04500 IPR031306 CFE88_RS04500 CFE88_RS04505 IPR005359 Protein with unknown function UPF0154 CFE88_RS04510 IPR005474 Transketolase, N-terminal CFE88_RS04510 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04510 IPR005478 Transketolase, bacterial-like CFE88_RS04510 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II CFE88_RS04510 IPR020826 Transketolase binding site CFE88_RS04510 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04510 IPR033248 CFE88_RS04510 CFE88_RS04515 IPR009242 Protein of unknown function DUF896 CFE88_RS04525 IPR006197 Peptidase S24, LexA-like CFE88_RS04525 IPR006199 LexA repressor, DNA-binding domain CFE88_RS04525 IPR006200 LexA repressor CFE88_RS04525 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04525 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS04535 IPR014044 CAP domain CFE88_RS04535 IPR029410 CAP-associated domain CFE88_RS04540 IPR001093 IMP dehydrogenase/GMP reductase CFE88_RS04540 IPR005994 Guanosine monophosphate reductase, type2 CFE88_RS04540 IPR013785 Aldolase-type TIM barrel CFE88_RS04540 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CFE88_RS04545 IPR001209 Ribosomal protein S14 CFE88_RS04545 IPR018271 Ribosomal protein S14, conserved site CFE88_RS04545 IPR023036 Ribosomal protein S14, bacterial/plastid CFE88_RS04550 IPR001705 Ribosomal protein L33 CFE88_RS04550 IPR011332 Zinc-binding ribosomal protein CFE88_RS04550 IPR018264 Ribosomal protein L33, conserved site CFE88_RS04555 IPR002226 Catalase haem-binding site CFE88_RS04555 IPR010582 Catalase immune-responsive domain CFE88_RS04555 IPR011614 Catalase core domain CFE88_RS04555 IPR018028 Catalase, mono-functional, haem-containing CFE88_RS04555 IPR020835 Catalase-like domain CFE88_RS04555 IPR024708 Catalase active site CFE88_RS04555 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 CFE88_RS04560 IPR002293 Amino acid/polyamine transporter I CFE88_RS04560 IPR004840 Amino acid permease, conserved site CFE88_RS04560 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS04570 IPR000150 Cof protein CFE88_RS04570 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS04570 IPR023214 HAD-like domain CFE88_RS04575 IPR000870 Homoserine kinase CFE88_RS04575 IPR006203 GHMP kinase, ATP-binding, conserved site CFE88_RS04575 IPR006204 GHMP kinase N-terminal domain CFE88_RS04575 IPR013750 GHMP kinase, C-terminal domain CFE88_RS04575 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04575 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04580 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CFE88_RS04580 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04580 IPR004450 Threonine synthase-like CFE88_RS04580 IPR026260 Threonine synthase, bacterial/archaeal CFE88_RS04585 IPR001342 Homoserine dehydrogenase, catalytic CFE88_RS04585 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CFE88_RS04585 IPR016040 NAD(P)-binding domain CFE88_RS04585 IPR016204 Homoserine dehydrogenase CFE88_RS04585 IPR019811 Homoserine dehydrogenase, conserved site CFE88_RS04590 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04590 IPR001341 Aspartate kinase domain CFE88_RS04590 IPR005260 Aspartate kinase, monofunctional class CFE88_RS04590 IPR018042 Aspartate kinase, conserved site CFE88_RS04590 IPR027795 GATS-like ACT domain CFE88_RS04610 IPR002071 Thermonuclease active site CFE88_RS04610 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CFE88_RS04610 IPR035437 CFE88_RS04610 CFE88_RS04615 IPR035568 CFE88_RS04615 CFE88_RS04620 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS04620 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS04620 IPR011006 CheY-like superfamily CFE88_RS04620 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04620 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS04625 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04625 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS04630 IPR000412 ABC-2 transporter CFE88_RS04630 IPR013525 ABC-2 type transporter CFE88_RS04635 IPR003439 ABC transporter-like CFE88_RS04635 IPR003593 AAA+ ATPase domain CFE88_RS04635 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04640 IPR001736 Phospholipase D/Transphosphatidylase CFE88_RS04640 IPR022924 Cardiolipin synthase CFE88_RS04640 IPR025202 Phospholipase D-like domain CFE88_RS04640 IPR027379 Cardiolipin synthase N-terminal CFE88_RS04640 IPR030874 CFE88_RS04640 CFE88_RS04650 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase CFE88_RS04650 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS04650 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS04650 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04655 IPR011434 Domain of unknown function DUF1535 CFE88_RS04660 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal CFE88_RS04660 IPR003346 Transposase, IS116/IS110/IS902 CFE88_RS04685 IPR019284 Xylella phage Xfas53, Orf42 CFE88_RS04695 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS04700 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS04700 IPR007921 CHAP domain CFE88_RS04705 IPR006480 Bacteriophage phi-29, Gp14, holin CFE88_RS04710 IPR018913 Domain of unknown function DUF2479 CFE88_RS04715 IPR013830 CFE88_RS04715 CFE88_RS04725 IPR010572 Prophage tail endopeptidase CFE88_RS04730 IPR008841 Siphovirus-type tail component CFE88_RS04735 IPR016024 Armadillo-type fold CFE88_RS04745 IPR024410 Protein of unknown function DUF3647 CFE88_RS04750 IPR011855 Phage major tail protein TP901-1 CFE88_RS04750 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04760 IPR010064 Bacteriophage HK97-gp10, putative tail-component CFE88_RS04770 IPR021146 Phage gp6-like head-tail connector protein CFE88_RS04775 IPR003343 Bacterial Ig-like, group 2 CFE88_RS04775 IPR008964 Invasin/intimin cell-adhesion CFE88_RS04785 IPR025580 Protein of unknown function DUF4355 CFE88_RS04795 IPR006528 Phage head morphogenesis domain CFE88_RS04795 IPR029100 Putative toxin 64 CFE88_RS04800 IPR006428 Portal protein, SPP1-type CFE88_RS04800 IPR021145 Portal protein, SPP1 Gp6-like CFE88_RS04805 IPR006437 Bacteriophage terminase, large subunit CFE88_RS04805 IPR035412 CFE88_RS04805 CFE88_RS04805 IPR035413 CFE88_RS04805 CFE88_RS04810 IPR009057 Homeodomain-like CFE88_RS04815 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04815 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CFE88_RS04815 IPR013324 RNA polymerase sigma factor, region 3/4 CFE88_RS04825 IPR014871 dUTPase/dCTP pyrophosphatase CFE88_RS04825 IPR016995 Uncharacterised phage-associated protein UCP032436 CFE88_RS04830 IPR019096 YopX protein CFE88_RS04830 IPR023385 YopX-like domain, beta barrel type CFE88_RS04830 IPR024059 YopX-like domain, N-terminal CFE88_RS04840 IPR011688 PVL Orf50 family CFE88_RS04845 IPR006343 Replication protein, DnaD/DnaB domain CFE88_RS04845 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04845 IPR034829 CFE88_RS04845 CFE88_RS04860 IPR009951 Host-nuclease inhibitor protein Gam CFE88_RS04870 IPR009682 Protein of unknown function DUF1270 CFE88_RS04880 IPR008003 Protein of unknown function DUF739 CFE88_RS04880 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04885 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS04885 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS04895 IPR002104 Integrase, catalytic CFE88_RS04895 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS04895 IPR013762 Integrase-like, catalytic core CFE88_RS04895 IPR023109 Integrase/recombinase, N-terminal CFE88_RS04895 IPR025269 Phage integrase SAM-like domain CFE88_RS04895 IPR028259 AP2-like integrase, N-terminal domain CFE88_RS04900 IPR004809 Glutamine synthetase type I CFE88_RS04900 IPR008146 Glutamine synthetase, catalytic domain CFE88_RS04900 IPR008147 Glutamine synthetase, beta-Grasp CFE88_RS04900 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CFE88_RS04900 IPR027302 Glutamine synthetase, N-terminal conserved site CFE88_RS04900 IPR027303 Glutamine synthetase, glycine-rich site CFE88_RS04905 IPR000551 MerR-type HTH domain CFE88_RS04905 IPR009061 DNA binding domain, putative CFE88_RS04910 IPR009651 Putative methionine gamma-lyase CFE88_RS04910 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS04910 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04915 IPR006073 GTP binding domain CFE88_RS04915 IPR016496 GTPase HflX CFE88_RS04915 IPR025121 GTPase HflX N-terminal domain CFE88_RS04915 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04915 IPR032305 CFE88_RS04915 CFE88_RS04920 IPR000889 Glutathione peroxidase CFE88_RS04920 IPR012336 Thioredoxin-like fold CFE88_RS04920 IPR029760 Glutathione peroxidase conserved site CFE88_RS04925 IPR005001 Host factor Hfq CFE88_RS04925 IPR010920 Like-Sm (LSM) domain CFE88_RS04930 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase CFE88_RS04930 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04935 IPR022742 Putative lysophospholipase CFE88_RS04935 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04940 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase CFE88_RS04940 IPR006076 FAD dependent oxidoreductase CFE88_RS04940 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS04940 IPR031656 CFE88_RS04940 CFE88_RS04945 IPR000577 CFE88_RS04945 CFE88_RS04945 IPR005999 Glycerol kinase CFE88_RS04945 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS04945 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS04945 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS04950 IPR000425 Major intrinsic protein CFE88_RS04950 IPR022357 Major intrinsic protein, conserved site CFE88_RS04950 IPR023271 Aquaporin-like CFE88_RS04955 IPR006699 Glycerol-3-phosphate responsive antiterminator CFE88_RS04960 IPR002099 DNA mismatch repair protein family CFE88_RS04960 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04960 IPR013507 DNA mismatch repair protein, C-terminal CFE88_RS04960 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04960 IPR014762 DNA mismatch repair, conserved site CFE88_RS04960 IPR014790 MutL, C-terminal, dimerisation CFE88_RS04960 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04960 IPR020667 DNA mismatch repair protein, MutL CFE88_RS04965 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS04965 IPR005748 DNA mismatch repair protein MutS, type 1 CFE88_RS04965 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CFE88_RS04965 IPR007696 DNA mismatch repair protein MutS, core CFE88_RS04965 IPR007860 DNA mismatch repair protein MutS, connector domain CFE88_RS04965 IPR007861 DNA mismatch repair protein MutS, clamp CFE88_RS04965 IPR016151 DNA mismatch repair protein MutS, N-terminal CFE88_RS04965 IPR017261 DNA mismatch repair protein Msh6 CFE88_RS04965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04970 IPR012652 Thiamine-precursor transporter protein CFE88_RS04975 IPR010368 Protein of unknown function DUF964 CFE88_RS04975 IPR016783 Biofilm formation YmcA CFE88_RS04975 IPR023378 YheA/YmcA-like domain CFE88_RS04980 IPR002792 TRAM domain CFE88_RS04980 IPR005839 Methylthiotransferase CFE88_RS04980 IPR006463 tRNA-i(6)A37 modification enzyme MiaB CFE88_RS04980 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS04980 IPR007197 Radical SAM CFE88_RS04980 IPR013848 Methylthiotransferase, N-terminal CFE88_RS04980 IPR020612 Methylthiotransferase, conserved site CFE88_RS04980 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS04985 IPR002767 Protein of unknown function DUF77 CFE88_RS04985 IPR029756 MTH1187/YkoF-like CFE88_RS04990 IPR008585 Protein of unknown function DUF867 CFE88_RS04995 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS04995 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate CFE88_RS04995 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04995 IPR032686 CFE88_RS04995 CFE88_RS05000 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain CFE88_RS05000 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal CFE88_RS05000 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II CFE88_RS05000 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain CFE88_RS05000 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit CFE88_RS05000 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05000 IPR033412 CFE88_RS05000 CFE88_RS05005 IPR005235 Metallophosphoesterase, MG_246/BB_0505 CFE88_RS05005 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05015 IPR003607 HD/PDEase domain CFE88_RS05015 IPR004087 K Homology domain CFE88_RS05015 IPR004088 K Homology domain, type 1 CFE88_RS05015 IPR006674 HD domain CFE88_RS05015 IPR006675 Uncharacterised domain HDIG CFE88_RS05015 IPR015946 K homology domain-like, alpha/beta CFE88_RS05015 IPR017705 Ribonuclease Y CFE88_RS05015 IPR022711 Ribonuclease Y, N-terminal CFE88_RS05020 IPR003593 AAA+ ATPase domain CFE88_RS05020 IPR013765 DNA recombination and repair protein RecA CFE88_RS05020 IPR020584 DNA recombination/repair protein RecA, conserved site CFE88_RS05020 IPR023400 DNA recombination and repair protein RecA, C-terminal CFE88_RS05020 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05025 IPR001453 Molybdopterin binding domain CFE88_RS05025 IPR008135 Competence-induced protein CinA CFE88_RS05030 IPR000462 CDP-alcohol phosphatidyltransferase CFE88_RS05030 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CFE88_RS05035 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS05035 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS05040 IPR016784 Uncharacterised protein UCP021288 with ACT domain CFE88_RS05040 IPR024514 Domain of unknown function DUF3388 CFE88_RS05045 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS05045 IPR016040 NAD(P)-binding domain CFE88_RS05050 IPR007863 Peptidase M16, C-terminal domain CFE88_RS05050 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS05050 IPR011765 Peptidase M16, N-terminal CFE88_RS05055 IPR007863 Peptidase M16, C-terminal domain CFE88_RS05055 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CFE88_RS05060 IPR000524 Transcription regulator HTH, GntR CFE88_RS05060 IPR011663 UbiC transcription regulator-associated CFE88_RS05060 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05060 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CFE88_RS05065 IPR002543 FtsK domain CFE88_RS05065 IPR003593 AAA+ ATPase domain CFE88_RS05065 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05065 IPR018541 FtsK gamma domain CFE88_RS05065 IPR020846 Major facilitator superfamily domain CFE88_RS05065 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05070 IPR001279 Beta-lactamase-like CFE88_RS05070 IPR004613 Ribonuclease J CFE88_RS05070 IPR011108 RNA-metabolising metallo-beta-lactamase CFE88_RS05070 IPR030854 CFE88_RS05070 CFE88_RS05075 IPR001247 Exoribonuclease, phosphorolytic domain 1 CFE88_RS05075 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS05075 IPR004087 K Homology domain CFE88_RS05075 IPR004088 K Homology domain, type 1 CFE88_RS05075 IPR012162 Polyribonucleotide nucleotidyltransferase CFE88_RS05075 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05075 IPR015847 Exoribonuclease, phosphorolytic domain 2 CFE88_RS05075 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CFE88_RS05075 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS05075 IPR022967 RNA-binding domain, S1 CFE88_RS05075 IPR027408 PNPase/RNase PH domain CFE88_RS05080 IPR000589 Ribosomal protein S15 CFE88_RS05080 IPR005290 Ribosomal protein S15, bacterial-type CFE88_RS05080 IPR009068 S15/NS1, RNA-binding CFE88_RS05085 IPR002606 Riboflavin kinase, bacterial CFE88_RS05085 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05085 IPR015864 FAD synthetase CFE88_RS05085 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CFE88_RS05085 IPR023465 Riboflavin kinase domain CFE88_RS05090 IPR002501 Pseudouridine synthase II CFE88_RS05090 IPR014780 tRNA pseudouridine synthase II, TruB CFE88_RS05090 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS05090 IPR032819 CFE88_RS05090 CFE88_RS05095 IPR000238 Ribosome-binding factor A CFE88_RS05095 IPR015946 K homology domain-like, alpha/beta CFE88_RS05095 IPR020053 Ribosome-binding factor A, conserved site CFE88_RS05095 IPR023799 Ribosome-binding factor A domain CFE88_RS05100 IPR000178 Translation initiation factor aIF-2, bacterial-like CFE88_RS05100 IPR000795 Elongation factor, GTP-binding domain CFE88_RS05100 IPR005225 Small GTP-binding protein domain CFE88_RS05100 IPR006847 Translation initiation factor IF-2, N-terminal CFE88_RS05100 IPR009000 Translation protein, beta-barrel domain CFE88_RS05100 IPR023115 Translation initiation factor IF- 2, domain 3 CFE88_RS05100 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05105 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS05105 IPR029064 50S ribosomal protein L30e-like CFE88_RS05110 IPR007393 Domain of unknown function DUF448 CFE88_RS05115 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS05115 IPR004087 K Homology domain CFE88_RS05115 IPR009019 K homology domain, prokaryotic type CFE88_RS05115 IPR010213 Transcription termination factor NusA CFE88_RS05115 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05115 IPR013735 Transcription factor NusA, N-terminal CFE88_RS05115 IPR015946 K homology domain-like, alpha/beta CFE88_RS05115 IPR022967 RNA-binding domain, S1 CFE88_RS05115 IPR025249 KH domain, NusA-like CFE88_RS05115 IPR030842 CFE88_RS05115 CFE88_RS05120 IPR003728 Ribosome maturation factor RimP CFE88_RS05120 IPR028989 Ribosome maturation factor RimP, N-terminal CFE88_RS05120 IPR028998 Ribosome maturation factor RimP, C-terminal CFE88_RS05125 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05125 IPR004013 PHP, C-terminal CFE88_RS05125 IPR006054 DNA polymerase III, epsilon subunit CFE88_RS05125 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CFE88_RS05125 IPR011708 Bacterial DNA polymerase III, alpha subunit CFE88_RS05125 IPR012337 Ribonuclease H-like domain CFE88_RS05125 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS05125 IPR024754 DNA polymerase III polC-like, N-terminal domain II CFE88_RS05125 IPR028112 DNA polymerase III polC-type, N-terminal domain I CFE88_RS05125 IPR029460 DNA polymerase, helix-hairpin-helix motif CFE88_RS05130 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain CFE88_RS05130 IPR002316 Proline-tRNA ligase, class IIa CFE88_RS05130 IPR004154 Anticodon-binding CFE88_RS05130 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CFE88_RS05130 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CFE88_RS05130 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CFE88_RS05135 IPR001478 PDZ domain CFE88_RS05135 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CFE88_RS05135 IPR008915 Peptidase M50 CFE88_RS05140 IPR000374 Phosphatidate cytidylyltransferase CFE88_RS05145 IPR001441 Decaprenyl diphosphate synthase-like CFE88_RS05145 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CFE88_RS05150 IPR002661 Ribosome recycling factor CFE88_RS05150 IPR023584 Ribosome recycling factor domain CFE88_RS05155 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS05155 IPR011817 Uridylate kinase CFE88_RS05155 IPR015963 Uridylate kinase, bacteria CFE88_RS05160 IPR001816 Translation elongation factor EFTs/EF1B CFE88_RS05160 IPR009060 UBA-like CFE88_RS05160 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CFE88_RS05160 IPR018101 Translation elongation factor Ts, conserved site CFE88_RS05165 IPR001865 Ribosomal protein S2 CFE88_RS05165 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CFE88_RS05165 IPR018130 Ribosomal protein S2, conserved site CFE88_RS05165 IPR023591 Ribosomal protein S2, flavodoxin-like domain CFE88_RS05170 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal CFE88_RS05170 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05170 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CFE88_RS05170 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY CFE88_RS05170 IPR029016 GAF domain-like CFE88_RS05175 IPR003593 AAA+ ATPase domain CFE88_RS05175 IPR003959 ATPase, AAA-type, core CFE88_RS05175 IPR004491 Heat shock protein HslU CFE88_RS05175 IPR019489 Clp ATPase, C-terminal CFE88_RS05175 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05180 IPR001353 Proteasome, subunit alpha/beta CFE88_RS05180 IPR022281 ATP-dependent protease, HslV subunit CFE88_RS05180 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS05185 IPR002104 Integrase, catalytic CFE88_RS05185 IPR004107 Integrase, SAM-like, N-terminal CFE88_RS05185 IPR010998 Integrase, Lambda-type, N-terminal CFE88_RS05185 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS05185 IPR011931 Tyrosine recombinase XerC CFE88_RS05185 IPR013762 Integrase-like, catalytic core CFE88_RS05185 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS05185 IPR023109 Integrase/recombinase, N-terminal CFE88_RS05190 IPR002218 Glucose-inhibited division protein A-related CFE88_RS05190 IPR004417 Folate-dependent ribothymidyl synthase CFE88_RS05190 IPR020595 Glucose-inhibited division protein A-related, conserved site CFE88_RS05190 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS05195 IPR003601 DNA topoisomerase, type IA, domain 2 CFE88_RS05195 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CFE88_RS05195 IPR005733 DNA topoisomerase I, bacterial-type CFE88_RS05195 IPR006171 Toprim domain CFE88_RS05195 IPR013497 DNA topoisomerase, type IA, central CFE88_RS05195 IPR013498 DNA topoisomerase, type IA, zn finger CFE88_RS05195 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS05195 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS05195 IPR023406 DNA topoisomerase, type IA, active site CFE88_RS05195 IPR028612 DNA topoisomerase I, type IA CFE88_RS05200 IPR003488 DNA recombination-mediator protein A CFE88_RS05205 IPR003781 CoA-binding CFE88_RS05205 IPR005810 Succinyl-CoA ligase, alpha subunit CFE88_RS05205 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CFE88_RS05205 IPR016040 NAD(P)-binding domain CFE88_RS05205 IPR016102 Succinyl-CoA synthetase-like CFE88_RS05205 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CFE88_RS05205 IPR033847 CFE88_RS05205 CFE88_RS05210 IPR005809 Succinyl-CoA synthetase, beta subunit CFE88_RS05210 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CFE88_RS05210 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type CFE88_RS05210 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05210 IPR016102 Succinyl-CoA synthetase-like CFE88_RS05210 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site CFE88_RS05215 IPR012337 Ribonuclease H-like domain CFE88_RS05215 IPR022898 Ribonuclease HII CFE88_RS05215 IPR024567 Ribonuclease HII/HIII domain CFE88_RS05220 IPR006073 GTP binding domain CFE88_RS05220 IPR016478 GTPase, MTG1 CFE88_RS05220 IPR019991 GTP-binding protein, ribosome biogenesis, YlqF CFE88_RS05220 IPR023179 GTP-binding protein, orthogonal bundle domain CFE88_RS05220 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05230 IPR018580 Uncharacterised protein family YfhO CFE88_RS05235 IPR018580 Uncharacterised protein family YfhO CFE88_RS05240 IPR001857 Ribosomal protein L19 CFE88_RS05240 IPR008991 Translation protein SH3-like domain CFE88_RS05240 IPR018257 Ribosomal protein L19, conserved site CFE88_RS05245 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CFE88_RS05245 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CFE88_RS05245 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05245 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05250 IPR002676 RimM protein CFE88_RS05250 IPR009000 Translation protein, beta-barrel domain CFE88_RS05250 IPR011033 PRC-barrel-like CFE88_RS05250 IPR011961 16S rRNA processing protein RimM CFE88_RS05250 IPR027275 PRC-barrel domain CFE88_RS05255 IPR000307 Ribosomal protein S16 CFE88_RS05255 IPR023803 Ribosomal protein S16 domain CFE88_RS05260 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CFE88_RS05260 IPR003593 AAA+ ATPase domain CFE88_RS05260 IPR004125 Signal recognition particle, SRP54 subunit, M-domain CFE88_RS05260 IPR004780 Signal recognition particle protein Ffh CFE88_RS05260 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle CFE88_RS05260 IPR022941 Signal recognition particle, SRP54 subunit CFE88_RS05260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05265 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CFE88_RS05265 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05265 IPR013324 RNA polymerase sigma factor, region 3/4 CFE88_RS05270 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CFE88_RS05270 IPR003593 AAA+ ATPase domain CFE88_RS05270 IPR004390 Signal-recognition particle receptor FtsY CFE88_RS05270 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle CFE88_RS05270 IPR018247 EF-Hand 1, calcium-binding site CFE88_RS05270 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05275 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS05275 IPR010935 SMCs flexible hinge CFE88_RS05275 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CFE88_RS05275 IPR024704 Structural maintenance of chromosomes protein CFE88_RS05275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05280 IPR000999 Ribonuclease III domain CFE88_RS05280 IPR011907 Ribonuclease III CFE88_RS05280 IPR014720 Double-stranded RNA-binding domain CFE88_RS05285 IPR003231 Acyl carrier protein (ACP) CFE88_RS05285 IPR006162 Phosphopantetheine attachment site CFE88_RS05285 IPR009081 Acyl carrier protein-like CFE88_RS05290 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS05290 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CFE88_RS05290 IPR016040 NAD(P)-binding domain CFE88_RS05290 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS05295 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CFE88_RS05295 IPR014043 Acyl transferase CFE88_RS05295 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CFE88_RS05295 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CFE88_RS05295 IPR020801 Polyketide synthase, acyl transferase domain CFE88_RS05295 IPR024925 Malonyl CoA-acyl carrier protein transacylase CFE88_RS05300 IPR003664 Fatty acid synthesis PlsX protein CFE88_RS05300 IPR012281 Phospholipid biosynthesis protein, PlsX-like CFE88_RS05305 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05305 IPR017275 Transcription factor FapR CFE88_RS05305 IPR029069 HotDog domain CFE88_RS05310 IPR001650 Helicase, C-terminal CFE88_RS05310 IPR004609 ATP-dependent DNA helicase RecG CFE88_RS05310 IPR011545 DEAD/DEAH box helicase domain CFE88_RS05310 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05310 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS05310 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05310 IPR033454 CFE88_RS05310 CFE88_RS05315 IPR004007 DhaL domain CFE88_RS05315 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05315 IPR019986 DAK2 domain-containing protein YloV CFE88_RS05315 IPR033470 CFE88_RS05315 CFE88_RS05320 IPR005531 Alkaline shock protein Asp23 CFE88_RS05325 IPR001383 Ribosomal protein L28 CFE88_RS05325 IPR026569 Ribosomal protein L28/L24 CFE88_RS05325 IPR034704 CFE88_RS05325 CFE88_RS05330 IPR006282 Thiamin pyrophosphokinase CFE88_RS05330 IPR007371 Thiamin pyrophosphokinase, catalytic domain CFE88_RS05330 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain CFE88_RS05335 IPR000056 Ribulose-phosphate 3-epimerase-like CFE88_RS05335 IPR011060 Ribulose-phosphate binding barrel CFE88_RS05335 IPR013785 Aldolase-type TIM barrel CFE88_RS05335 IPR026019 Ribulose-phosphate 3-epimerase CFE88_RS05340 IPR004881 Ribosome biogenesis GTPase RsgA, putative CFE88_RS05340 IPR010914 EngC GTPase CFE88_RS05340 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05340 IPR031944 CFE88_RS05340 CFE88_RS05345 IPR000719 Protein kinase domain CFE88_RS05345 IPR005543 PASTA domain CFE88_RS05345 IPR008271 Serine/threonine-protein kinase, active site CFE88_RS05345 IPR011009 Protein kinase-like domain CFE88_RS05345 IPR017441 Protein kinase, ATP binding site CFE88_RS05350 IPR001932 Protein phosphatase 2C (PP2C)-like domain CFE88_RS05355 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CFE88_RS05355 IPR007197 Radical SAM CFE88_RS05355 IPR013785 Aldolase-type TIM barrel CFE88_RS05355 IPR027492 Dual-specificity RNA methyltransferase RlmN CFE88_RS05360 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p CFE88_RS05360 IPR004573 rRNA small subunit methyltransferase B CFE88_RS05360 IPR006027 NusB/RsmB/TIM44 CFE88_RS05360 IPR023267 RNA (C5-cytosine) methyltransferase CFE88_RS05360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS05365 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CFE88_RS05365 IPR002376 Formyl transferase, N-terminal CFE88_RS05365 IPR005793 Formyl transferase, C-terminal CFE88_RS05365 IPR005794 Methionyl-tRNA formyltransferase CFE88_RS05365 IPR011034 Formyl transferase, C-terminal-like CFE88_RS05370 IPR023635 Peptide deformylase CFE88_RS05375 IPR007829 TM2 domain CFE88_RS05380 IPR001650 Helicase, C-terminal CFE88_RS05380 IPR005259 Primosomal protein n CFE88_RS05380 IPR006935 Helicase/UvrB domain CFE88_RS05380 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS05380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05385 IPR003382 Flavoprotein CFE88_RS05385 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CFE88_RS05385 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CFE88_RS05390 IPR003716 DNA-directed RNA polymerase, omega subunit CFE88_RS05390 IPR006110 RNA polymerase, subunit omega/K/RPB6 CFE88_RS05390 IPR012293 RNA polymerase subunit, RPB6/omega CFE88_RS05395 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CFE88_RS05395 IPR017665 Guanylate kinase CFE88_RS05395 IPR020590 Guanylate kinase, conserved site CFE88_RS05395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05400 IPR008532 Domain of unknown function DUF814 CFE88_RS05405 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase CFE88_RS05405 IPR027259 Predicted 3-demethylubiquinone-9 3-methyltransferase, bacterial CFE88_RS05405 IPR028973 3-demethylubiquinone-9 3-methyltransferase CFE88_RS05405 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05415 IPR000836 Phosphoribosyltransferase domain CFE88_RS05415 IPR004467 Orotate phosphoribosyl transferase domain CFE88_RS05415 IPR023031 Orotate phosphoribosyltransferase CFE88_RS05415 IPR029057 Phosphoribosyltransferase-like CFE88_RS05420 IPR001754 Orotidine 5'-phosphate decarboxylase domain CFE88_RS05420 IPR011060 Ribulose-phosphate binding barrel CFE88_RS05420 IPR013785 Aldolase-type TIM barrel CFE88_RS05420 IPR014732 Orotidine 5'-phosphate decarboxylase CFE88_RS05420 IPR018089 Orotidine 5'-phosphate decarboxylase, active site CFE88_RS05425 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS05425 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CFE88_RS05425 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CFE88_RS05425 IPR006275 Carbamoyl-phosphate synthase, large subunit CFE88_RS05425 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05425 IPR016185 Pre-ATP-grasp domain CFE88_RS05430 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain CFE88_RS05430 IPR006274 Carbamoyl-phosphate synthase, small subunit CFE88_RS05430 IPR017926 Glutamine amidotransferase CFE88_RS05430 IPR029062 Class I glutamine amidotransferase-like CFE88_RS05435 IPR002195 Dihydroorotase, conserved site CFE88_RS05435 IPR004722 Dihydroorotase CFE88_RS05435 IPR006680 Amidohydrolase 1 CFE88_RS05435 IPR011059 Metal-dependent hydrolase, composite domain CFE88_RS05435 IPR032466 CFE88_RS05435 CFE88_RS05440 IPR002082 Aspartate carbamoyltransferase CFE88_RS05440 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS05440 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS05440 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS05445 IPR006042 Xanthine/uracil permease CFE88_RS05445 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS05455 IPR000836 Phosphoribosyltransferase domain CFE88_RS05455 IPR023050 Bifunctional protein PyrR CFE88_RS05455 IPR029057 Phosphoribosyltransferase-like CFE88_RS05460 IPR002942 RNA-binding S4 domain CFE88_RS05460 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F CFE88_RS05460 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CFE88_RS05460 IPR006225 Pseudouridine synthase, RluC/RluD CFE88_RS05460 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS05465 IPR001872 Peptidase A8, signal peptidase II CFE88_RS05470 IPR007921 CHAP domain CFE88_RS05475 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS05475 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05480 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS05480 IPR002300 Aminoacyl-tRNA synthetase, class Ia CFE88_RS05480 IPR002301 Isoleucine-tRNA ligase CFE88_RS05480 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CFE88_RS05480 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS05480 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase CFE88_RS05480 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS05480 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05480 IPR023585 Isoleucine-tRNA ligase, type 1 CFE88_RS05485 IPR007793 DivIVA family CFE88_RS05485 IPR019933 DivIVA domain CFE88_RS05490 IPR002942 RNA-binding S4 domain CFE88_RS05495 IPR003425 Uncharacterised protein family Ycf19 CFE88_RS05500 IPR007561 Cell division protein SepF/SepF-related CFE88_RS05500 IPR023052 Cell division protein SepF CFE88_RS05505 IPR001608 Alanine racemase, N-terminal CFE88_RS05505 IPR011078 Uncharacterised protein family UPF0001 CFE88_RS05505 IPR029066 PLP-binding barrel CFE88_RS05510 IPR003730 Multi-copper polyphenol oxidoreductase, laccase CFE88_RS05510 IPR011324 Cytotoxic necrotizing factor-like, catalytic CFE88_RS05515 IPR000158 Cell division protein FtsZ CFE88_RS05515 IPR003008 Tubulin/FtsZ, GTPase domain CFE88_RS05515 IPR008280 Tubulin/FtsZ, C-terminal CFE88_RS05515 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CFE88_RS05515 IPR020805 Cell division protein FtsZ, conserved site CFE88_RS05515 IPR024757 Cell division protein FtsZ, C-terminal CFE88_RS05520 IPR003494 SHS2 domain inserted in FtsA CFE88_RS05520 IPR020823 Cell division protein FtsA CFE88_RS05525 IPR013685 Polypeptide-transport-associated, FtsQ-type CFE88_RS05525 IPR026580 Cell division protein DivIB CFE88_RS05530 IPR004101 Mur ligase, C-terminal CFE88_RS05530 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CFE88_RS05530 IPR013221 Mur ligase, central CFE88_RS05535 IPR000715 Glycosyl transferase, family 4 CFE88_RS05535 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CFE88_RS05535 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CFE88_RS05540 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS05540 IPR005311 Penicillin-binding protein, dimerisation domain CFE88_RS05540 IPR005543 PASTA domain CFE88_RS05540 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS05545 IPR007060 Septum formation initiator FtsL/DivIC CFE88_RS05545 IPR011922 Cell division protein FtsL CFE88_RS05550 IPR002903 Ribosomal RNA small subunit methyltransferase H CFE88_RS05550 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain CFE88_RS05550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS05555 IPR003444 MraZ CFE88_RS05555 IPR020603 MraZ domain CFE88_RS05560 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS05565 IPR000182 GNAT domain CFE88_RS05565 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS05565 IPR017274 Putative N-acetyltransferase YlbP CFE88_RS05570 IPR006439 HAD hydrolase, subfamily IA CFE88_RS05570 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB CFE88_RS05570 IPR023198 Phosphoglycolate phosphatase, domain 2 CFE88_RS05570 IPR023214 HAD-like domain CFE88_RS05575 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05580 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05585 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05590 IPR008846 Staphylococcal hemolytic protein family CFE88_RS05600 IPR000979 Phosphodiesterase MJ0936/Vps29 CFE88_RS05600 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type CFE88_RS05600 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05605 IPR002637 Ham1-like protein CFE88_RS05605 IPR020922 Non-canonical purine NTP pyrophosphatase CFE88_RS05605 IPR029001 Inosine triphosphate pyrophosphatase-like CFE88_RS05610 IPR001920 Asp/Glu racemase CFE88_RS05610 IPR004391 Glutamate racemase CFE88_RS05610 IPR015942 Asp/Glu/hydantoin racemase CFE88_RS05610 IPR018187 Asp/Glu racemase, active site CFE88_RS05610 IPR033134 CFE88_RS05610 CFE88_RS05615 IPR001041 2Fe-2S ferredoxin-type domain CFE88_RS05615 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CFE88_RS05615 IPR009051 Alpha-helical ferredoxin CFE88_RS05615 IPR012675 Beta-grasp domain CFE88_RS05615 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS05615 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS05615 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CFE88_RS05620 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CFE88_RS05620 IPR003953 FAD binding domain CFE88_RS05620 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria CFE88_RS05620 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CFE88_RS05620 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS05620 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain CFE88_RS05625 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit CFE88_RS05625 IPR011138 Succinate dehydrogenase cytochrome b558 subunit CFE88_RS05625 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute CFE88_RS05625 IPR034804 CFE88_RS05625 CFE88_RS05635 IPR000305 GIY-YIG nuclease superfamily CFE88_RS05635 IPR001162 UvrC family homology region CFE88_RS05635 IPR001943 UVR domain CFE88_RS05635 IPR004791 UvrABC system, subunit C CFE88_RS05635 IPR010994 RuvA domain 2-like CFE88_RS05640 IPR005746 Thioredoxin CFE88_RS05640 IPR012336 Thioredoxin-like fold CFE88_RS05640 IPR013766 Thioredoxin domain CFE88_RS05640 IPR017937 Thioredoxin, conserved site CFE88_RS05645 IPR000432 DNA mismatch repair protein MutS, C-terminal CFE88_RS05645 IPR002625 Smr protein/MutS2 C-terminal CFE88_RS05645 IPR005747 Endonuclease MutS2 CFE88_RS05645 IPR007696 DNA mismatch repair protein MutS, core CFE88_RS05645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05650 IPR002054 DNA-directed DNA polymerase X CFE88_RS05650 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05650 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS05650 IPR004013 PHP, C-terminal CFE88_RS05650 IPR010996 DNA polymerase beta-like, N-terminal domain CFE88_RS05650 IPR016195 Polymerase/histidinol phosphatase-like CFE88_RS05650 IPR022311 Uncharacterised conserved protein UCP005047, YshC CFE88_RS05650 IPR022312 DNA polymerase family X CFE88_RS05650 IPR029398 DNA polymerase beta, thumb domain CFE88_RS05655 IPR003825 Colicin V production, CvpA CFE88_RS05660 IPR007838 Cell division protein ZapA-like CFE88_RS05665 IPR004641 Ribonuclease HIII CFE88_RS05665 IPR012337 Ribonuclease H-like domain CFE88_RS05665 IPR024567 Ribonuclease HII/HIII domain CFE88_RS05665 IPR024568 Ribonuclease HIII, N-terminal CFE88_RS05670 IPR002547 tRNA-binding domain CFE88_RS05670 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CFE88_RS05670 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding CFE88_RS05670 IPR005146 B3/B4 tRNA-binding domain CFE88_RS05670 IPR005147 tRNA synthetase, B5-domain CFE88_RS05670 IPR009061 DNA binding domain, putative CFE88_RS05670 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05670 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS05675 IPR002319 Phenylalanyl-tRNA synthetase CFE88_RS05675 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CFE88_RS05675 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CFE88_RS05675 IPR010978 tRNA-binding arm CFE88_RS05675 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CFE88_RS05680 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS05680 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CFE88_RS05680 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05680 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05680 IPR029064 50S ribosomal protein L30e-like CFE88_RS05690 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS05690 IPR019948 Gram-positive anchor CFE88_RS05695 IPR002677 Ribosomal protein L32p CFE88_RS05695 IPR011332 Zinc-binding ribosomal protein CFE88_RS05705 IPR003772 Protein of unknown function DUF177 CFE88_RS05710 IPR008513 Uncharacterised protein family UPF0348 CFE88_RS05710 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05715 IPR001980 Coenzyme A biosynthesis protein CFE88_RS05715 IPR004821 Cytidyltransferase-like domain CFE88_RS05715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05720 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CFE88_RS05720 IPR004398 RNA methyltransferase, RsmD CFE88_RS05720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS05730 IPR016979 Protein of unknown function DUF2129 CFE88_RS05740 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain CFE88_RS05740 IPR030395 CFE88_RS05740 CFE88_RS05745 IPR010368 Protein of unknown function DUF964 CFE88_RS05745 IPR023378 YheA/YmcA-like domain CFE88_RS05750 IPR014044 CAP domain CFE88_RS05750 IPR029410 CAP-associated domain CFE88_RS05755 IPR007352 Protein of unknown function DUF420 CFE88_RS05755 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CFE88_RS05760 IPR000537 UbiA prenyltransferase family CFE88_RS05760 IPR006369 Protohaem IX farnesyltransferase CFE88_RS05765 IPR003780 COX15/CtaA family CFE88_RS05765 IPR023755 Heme A synthase, type 1 CFE88_RS05770 IPR000089 Biotin/lipoyl attachment CFE88_RS05770 IPR000891 Pyruvate carboxyltransferase CFE88_RS05770 IPR003379 Carboxylase, conserved domain CFE88_RS05770 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CFE88_RS05770 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal CFE88_RS05770 IPR005482 Biotin carboxylase, C-terminal CFE88_RS05770 IPR005930 Pyruvate carboxylase CFE88_RS05770 IPR011053 Single hybrid motif CFE88_RS05770 IPR011054 Rudiment single hybrid motif CFE88_RS05770 IPR013785 Aldolase-type TIM barrel CFE88_RS05770 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05770 IPR016185 Pre-ATP-grasp domain CFE88_RS05775 IPR001182 Cell cycle protein FtsW/RodA CFE88_RS05780 IPR009983 Uncharacterised protein family UPF0358 CFE88_RS05785 IPR020229 Uncharacterised protein YlaL CFE88_RS05790 IPR019241 Protein of unknown function DUF2197 CFE88_RS05795 IPR000640 Translation elongation factor EFG, V domain CFE88_RS05795 IPR000795 Elongation factor, GTP-binding domain CFE88_RS05795 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 CFE88_RS05795 IPR005225 Small GTP-binding protein domain CFE88_RS05795 IPR006298 GTP-binding protein TypA CFE88_RS05795 IPR009000 Translation protein, beta-barrel domain CFE88_RS05795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05795 IPR031157 CFE88_RS05795 CFE88_RS05795 IPR035647 CFE88_RS05795 CFE88_RS05800 IPR035211 CFE88_RS05800 CFE88_RS05805 IPR000760 Inositol monophosphatase CFE88_RS05805 IPR020550 Inositol monophosphatase, conserved site CFE88_RS05805 IPR020583 Inositol monophosphatase, metal-binding site CFE88_RS05810 IPR009403 Protein of unknown function UPF0637 CFE88_RS05815 IPR001046 NRAMP family CFE88_RS05820 IPR000515 MetI-like domain CFE88_RS05820 IPR025273 Domain of unknown function DUF4064 CFE88_RS05825 IPR025273 Domain of unknown function DUF4064 CFE88_RS05830 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein CFE88_RS05835 IPR000515 MetI-like domain CFE88_RS05840 IPR000515 MetI-like domain CFE88_RS05845 IPR003439 ABC transporter-like CFE88_RS05845 IPR003593 AAA+ ATPase domain CFE88_RS05845 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit CFE88_RS05845 IPR008995 Molybdate/tungstate binding, C-terminal CFE88_RS05845 IPR013611 Transport-associated OB, type 2 CFE88_RS05845 IPR017871 ABC transporter, conserved site CFE88_RS05845 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05850 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS05850 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS05850 IPR011051 RmlC-like cupin domain CFE88_RS05850 IPR013096 Cupin 2, conserved barrel CFE88_RS05850 IPR014710 RmlC-like jelly roll fold CFE88_RS05855 IPR007920 Protein of unknown function UPF0223 CFE88_RS05855 IPR023324 BH2638-like domain CFE88_RS05860 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS05860 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS05860 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS05860 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS05860 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS05865 IPR000089 Biotin/lipoyl attachment CFE88_RS05865 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS05865 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS05865 IPR004167 E3 binding CFE88_RS05865 IPR011053 Single hybrid motif CFE88_RS05870 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS05870 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II CFE88_RS05870 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05870 IPR033248 CFE88_RS05870 CFE88_RS05875 IPR001017 Dehydrogenase, E1 component CFE88_RS05875 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha CFE88_RS05875 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05880 IPR019454 Putative cell-wall binding lipoprotein YkyA-like CFE88_RS05885 IPR023635 Peptide deformylase CFE88_RS05890 IPR002559 Transposase, IS4-like CFE88_RS05890 IPR008490 Transposase InsH, N-terminal CFE88_RS05890 IPR014736 Transposase, Tn5-like, core CFE88_RS05895 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal CFE88_RS05895 IPR003346 Transposase, IS116/IS110/IS902 CFE88_RS05900 IPR009907 Protein of unknown function DUF1447 CFE88_RS05905 IPR001279 Beta-lactamase-like CFE88_RS05905 IPR001587 Ribonuclease J, conserved site CFE88_RS05905 IPR004613 Ribonuclease J CFE88_RS05905 IPR011108 RNA-metabolising metallo-beta-lactamase CFE88_RS05905 IPR030854 CFE88_RS05905 CFE88_RS05910 IPR003148 Regulator of K+ conductance, N-terminal CFE88_RS05910 IPR006037 Regulator of K+ conductance, C-terminal CFE88_RS05910 IPR016040 NAD(P)-binding domain CFE88_RS05915 IPR003317 Cytochrome d ubiquinol oxidase, subunit II CFE88_RS05920 IPR002585 Cytochrome d ubiquinol oxidase, subunit I CFE88_RS05925 IPR002109 Glutaredoxin CFE88_RS05925 IPR012336 Thioredoxin-like fold CFE88_RS05930 IPR000121 PEP-utilising enzyme, C-terminal CFE88_RS05930 IPR006318 Phosphoenolpyruvate-utilising enzyme CFE88_RS05930 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS05930 IPR008731 Phosphotransferase system, enzyme I N-terminal CFE88_RS05930 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain CFE88_RS05930 IPR018274 PEP-utilising enzyme, active site CFE88_RS05930 IPR023151 PEP-utilising enzyme, conserved site CFE88_RS05930 IPR024692 Phosphotransferase system, enzyme I CFE88_RS05935 IPR000032 Phosphocarrier HPr protein-like CFE88_RS05935 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CFE88_RS05935 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CFE88_RS05945 IPR002478 PUA domain CFE88_RS05945 IPR015947 PUA-like domain CFE88_RS05945 IPR019614 S-adenosylmethionine-dependent methyltransferase CFE88_RS05945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS05950 IPR023298 P-type ATPase, transmembrane domain CFE88_RS05960 IPR010354 Oleate hydratase CFE88_RS05960 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS05965 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted CFE88_RS05970 IPR003439 ABC transporter-like CFE88_RS05970 IPR003593 AAA+ ATPase domain CFE88_RS05970 IPR017871 ABC transporter, conserved site CFE88_RS05970 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05975 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS05980 IPR000115 Phosphoribosylglycinamide synthetase CFE88_RS05980 IPR011054 Rudiment single hybrid motif CFE88_RS05980 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS05980 IPR016185 Pre-ATP-grasp domain CFE88_RS05980 IPR020559 Phosphoribosylglycinamide synthetase, conserved site CFE88_RS05980 IPR020560 Phosphoribosylglycinamide synthetase, C-domain CFE88_RS05980 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CFE88_RS05980 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal CFE88_RS05985 IPR002695 AICARFT/IMPCHase bienzyme CFE88_RS05985 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05985 IPR016193 Cytidine deaminase-like CFE88_RS05985 IPR024051 AICAR transformylase domain CFE88_RS05990 IPR002376 Formyl transferase, N-terminal CFE88_RS05990 IPR004607 Phosphoribosylglycinamide formyltransferase CFE88_RS05995 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase CFE88_RS05995 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS05995 IPR016188 PurM, N-terminal-like CFE88_RS06000 IPR000836 Phosphoribosyltransferase domain CFE88_RS06000 IPR005854 Amidophosphoribosyl transferase CFE88_RS06000 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS06000 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS06000 IPR029057 Phosphoribosyltransferase-like CFE88_RS06005 IPR010074 Phosphoribosylformylglycinamidine synthase II CFE88_RS06005 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 IPR016188 PurM, N-terminal-like CFE88_RS06010 IPR010075 Phosphoribosylformylglycinamidine synthase I CFE88_RS06010 IPR029062 Class I glutamine amidotransferase-like CFE88_RS06015 IPR003850 Phosphoribosylformylglycinamidine synthetase, PurS subunit CFE88_RS06020 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase CFE88_RS06020 IPR018236 SAICAR synthetase, conserved site CFE88_RS06020 IPR028923 SAICAR synthetase/ADE2, N-terminal CFE88_RS06025 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CFE88_RS06025 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit CFE88_RS06025 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS06025 IPR011054 Rudiment single hybrid motif CFE88_RS06025 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS06025 IPR016185 Pre-ATP-grasp domain CFE88_RS06030 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain CFE88_RS06030 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE CFE88_RS06030 IPR033747 CFE88_RS06030 CFE88_RS06035 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CFE88_RS06035 IPR016040 NAD(P)-binding domain CFE88_RS06035 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CFE88_RS06035 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CFE88_RS06040 IPR013783 Immunoglobulin-like fold CFE88_RS06040 IPR032179 CFE88_RS06040 CFE88_RS06045 IPR006332 Quinol oxidase subunit II CFE88_RS06045 IPR006333 Cytochrome o ubiquinol oxidase subunit II CFE88_RS06045 IPR008972 Cupredoxin CFE88_RS06045 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CFE88_RS06050 IPR000883 Cytochrome c oxidase subunit I CFE88_RS06050 IPR014233 Quinol oxidase subunit I CFE88_RS06050 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CFE88_RS06050 IPR023616 Cytochrome c oxidase, subunit I domain CFE88_RS06055 IPR000298 Cytochrome c oxidase subunit III domain CFE88_RS06055 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CFE88_RS06055 IPR014246 Quinol oxidase subunit III CFE88_RS06060 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes CFE88_RS06060 IPR014250 Quinol oxidase subunit IV CFE88_RS06065 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS06070 IPR001466 Beta-lactamase-related CFE88_RS06070 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS06075 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS06075 IPR015943 WD40/YVTN repeat-like-containing domain CFE88_RS06080 IPR024469 Protein of unknown function DUF2538 CFE88_RS06085 IPR000182 GNAT domain CFE88_RS06085 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06090 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CFE88_RS06090 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS06090 IPR025987 SH3-like domain CFE88_RS06095 IPR000835 MarR-type HTH domain CFE88_RS06095 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06100 IPR002656 Acyltransferase 3 CFE88_RS06105 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CFE88_RS06105 IPR004839 Aminotransferase, class I/classII CFE88_RS06105 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS06105 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS06105 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06110 IPR002686 Transposase IS200-like CFE88_RS06120 IPR001753 Crotonase superfamily CFE88_RS06120 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase CFE88_RS06120 IPR014748 Crontonase, C-terminal CFE88_RS06120 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CFE88_RS06120 IPR029045 ClpP/crotonase-like domain CFE88_RS06125 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS06125 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase CFE88_RS06125 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06130 IPR004433 Menaquinone biosynthesis protein MenD CFE88_RS06130 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS06130 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS06130 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS06130 IPR029061 Thiamin diphosphate-binding fold CFE88_RS06130 IPR032264 CFE88_RS06130 CFE88_RS06135 IPR004561 Isochorismate synthase CFE88_RS06135 IPR005801 ADC synthase CFE88_RS06135 IPR015890 Chorismate binding, C-terminal CFE88_RS06145 IPR000537 UbiA prenyltransferase family CFE88_RS06145 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase CFE88_RS06145 IPR026046 UbiA prenyltransferase domain containing protein 1 CFE88_RS06155 IPR000182 GNAT domain CFE88_RS06155 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06165 IPR007829 TM2 domain CFE88_RS06175 IPR008813 Plasmid replication protein, RepL CFE88_RS06180 IPR001123 Lysine-type exporter protein (LYSE/YGGA) CFE88_RS06185 IPR005804 Fatty acid desaturase, type 1 CFE88_RS06200 IPR001668 Plasmid recombination enzyme CFE88_RS06205 IPR001668 Plasmid recombination enzyme CFE88_RS06220 IPR010461 Competence protein ComK CFE88_RS06225 IPR014957 IDEAL domain CFE88_RS06230 IPR004143 Biotin/lipoate A/B protein ligase CFE88_RS06230 IPR004562 Lipoyltransferase/lipoate-protein ligase CFE88_RS06230 IPR019491 Lipoate protein ligase, C-terminal CFE88_RS06235 IPR018690 Protein of unknown function DUF2187 CFE88_RS06245 IPR006146 5'-Nucleotidase, conserved site CFE88_RS06245 IPR006179 5'-Nucleotidase/apyrase CFE88_RS06245 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS06245 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06250 IPR003445 Cation transporter CFE88_RS06255 IPR001478 PDZ domain CFE88_RS06255 IPR001940 Peptidase S1C CFE88_RS06255 IPR009003 Trypsin-like cysteine/serine peptidase domain CFE88_RS06260 IPR005496 Integral membrane protein TerC CFE88_RS06260 IPR020846 Major facilitator superfamily domain CFE88_RS06260 IPR022493 Integral membrane YkoY CFE88_RS06265 IPR000795 Elongation factor, GTP-binding domain CFE88_RS06265 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 CFE88_RS06265 IPR004548 Peptide chain release factor 3 CFE88_RS06265 IPR005225 Small GTP-binding protein domain CFE88_RS06265 IPR009000 Translation protein, beta-barrel domain CFE88_RS06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06265 IPR031157 CFE88_RS06265 CFE88_RS06265 IPR032090 CFE88_RS06265 CFE88_RS06265 IPR035647 CFE88_RS06265 CFE88_RS06270 IPR020260 Uncharacterised protein family YueH CFE88_RS06275 IPR000713 Mur ligase, N-terminal CFE88_RS06275 IPR004101 Mur ligase, C-terminal CFE88_RS06275 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CFE88_RS06275 IPR013221 Mur ligase, central CFE88_RS06280 IPR007235 Glycosyl transferase, family 28, C-terminal CFE88_RS06280 IPR009695 Diacylglycerol glucosyltransferase, N-terminal CFE88_RS06280 IPR023589 Processive diacylglycerol glucosyltransferase CFE88_RS06285 IPR011701 Major facilitator superfamily CFE88_RS06285 IPR020846 Major facilitator superfamily domain CFE88_RS06290 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase CFE88_RS06290 IPR022932 Uncharacterised protein family UPF0477, phosphoesterase CFE88_RS06295 IPR000801 Putative esterase CFE88_RS06295 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06300 IPR002549 Uncharacterised protein family UPF0118 CFE88_RS06305 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS06305 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS06305 IPR016040 NAD(P)-binding domain CFE88_RS06320 IPR005915 Tandem five-TM protein CFE88_RS06340 IPR005915 Tandem five-TM protein CFE88_RS06345 IPR005915 Tandem five-TM protein CFE88_RS06365 IPR005915 Tandem five-TM protein CFE88_RS06375 IPR024453 CFE88_RS06375 CFE88_RS06380 IPR021486 Protein of unknown function DUF3139 CFE88_RS06385 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal CFE88_RS06385 IPR003346 Transposase, IS116/IS110/IS902 CFE88_RS06400 IPR009736 Protein of unknown function DUF1307 CFE88_RS06415 IPR002577 Helix-turn-helix, HxlR type CFE88_RS06415 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06420 IPR003439 ABC transporter-like CFE88_RS06420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06430 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06435 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06435 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CFE88_RS06440 IPR001282 Glucose-6-phosphate dehydrogenase CFE88_RS06440 IPR016040 NAD(P)-binding domain CFE88_RS06440 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06445 IPR016040 NAD(P)-binding domain CFE88_RS06445 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CFE88_RS06450 IPR025233 Protein of unknown function DUF4176 CFE88_RS06455 IPR005915 Tandem five-TM protein CFE88_RS06455 IPR020846 Major facilitator superfamily domain CFE88_RS06460 IPR005915 Tandem five-TM protein CFE88_RS06465 IPR005915 Tandem five-TM protein CFE88_RS06470 IPR031690 CFE88_RS06470 CFE88_RS06480 IPR031690 CFE88_RS06480 CFE88_RS06485 IPR031689 CFE88_RS06485 CFE88_RS06495 IPR028949 Putative toxin 43 CFE88_RS06500 IPR014983 GAD-related CFE88_RS06500 IPR015002 Domain of unknown function DUF1851 CFE88_RS06505 IPR006728 Protein of unknown function DUF600 CFE88_RS06510 IPR005915 Tandem five-TM protein CFE88_RS06520 IPR003148 Regulator of K+ conductance, N-terminal CFE88_RS06520 IPR006037 Regulator of K+ conductance, C-terminal CFE88_RS06520 IPR006153 Cation/H+ exchanger CFE88_RS06520 IPR016040 NAD(P)-binding domain CFE88_RS06525 IPR000644 CBS domain CFE88_RS06525 IPR006667 SLC41 divalent cation transporters, integral membrane domain CFE88_RS06525 IPR006668 Magnesium transporter, MgtE intracellular domain CFE88_RS06525 IPR006669 Magnesium transporter MgtE CFE88_RS06530 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F CFE88_RS06530 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CFE88_RS06530 IPR006225 Pseudouridine synthase, RluC/RluD CFE88_RS06530 IPR020103 Pseudouridine synthase, catalytic domain CFE88_RS06535 IPR002504 Inorganic polyphosphate/ATP-NAD kinase CFE88_RS06535 IPR016064 ATP-NAD kinase-like domain CFE88_RS06535 IPR017437 ATP-NAD kinase, PpnK-type, all-beta CFE88_RS06535 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 CFE88_RS06540 IPR007685 RelA/SpoT CFE88_RS06545 IPR020908 Uncharacterised protein family UPF0738 CFE88_RS06550 IPR009195 Uncharacterised protein family YjbK CFE88_RS06550 IPR023577 CYTH-like domain CFE88_RS06550 IPR033469 CFE88_RS06550 CFE88_RS06555 IPR001486 Globin, truncated bacterial-like CFE88_RS06555 IPR009050 Globin-like CFE88_RS06560 IPR012336 Thioredoxin-like fold CFE88_RS06565 IPR002686 Transposase IS200-like CFE88_RS06570 IPR002686 Transposase IS200-like CFE88_RS06575 IPR001567 Peptidase M3A/M3B CFE88_RS06575 IPR004438 Peptidase M3B, oligoendopeptidase F CFE88_RS06575 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS06580 IPR010330 Competence-induced protein CoiA-like CFE88_RS06580 IPR021176 Competence-induced protein CoiA-like, bacterial CFE88_RS06585 IPR008681 Negative regulator of genetic competence, MecA CFE88_RS06590 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS06590 IPR006660 Arsenate reductase-like CFE88_RS06590 IPR012336 Thioredoxin-like fold CFE88_RS06590 IPR023731 Regulatory protein Spx CFE88_RS06595 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS06595 IPR002305 Aminoacyl-tRNA synthetase, class Ic CFE88_RS06595 IPR002306 Tryptophan-tRNA ligase CFE88_RS06595 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06595 IPR024109 Tryptophan-tRNA ligase, bacterial-type CFE88_RS06600 IPR000914 Bacterial extracellular solute-binding protein, family 5 CFE88_RS06600 IPR030678 CFE88_RS06600 CFE88_RS06605 IPR003439 ABC transporter-like CFE88_RS06605 IPR003593 AAA+ ATPase domain CFE88_RS06605 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CFE88_RS06605 IPR017871 ABC transporter, conserved site CFE88_RS06605 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06610 IPR003439 ABC transporter-like CFE88_RS06610 IPR003593 AAA+ ATPase domain CFE88_RS06610 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CFE88_RS06610 IPR017871 ABC transporter, conserved site CFE88_RS06610 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06615 IPR000515 MetI-like domain CFE88_RS06615 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS06620 IPR000515 MetI-like domain CFE88_RS06625 IPR025007 Domain of unknown function DUF3899 CFE88_RS06630 IPR014030 Beta-ketoacyl synthase, N-terminal CFE88_RS06630 IPR014031 Beta-ketoacyl synthase, C-terminal CFE88_RS06630 IPR016039 Thiolase-like CFE88_RS06630 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CFE88_RS06630 IPR018201 Beta-ketoacyl synthase, active site CFE88_RS06630 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CFE88_RS06635 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CFE88_RS06635 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal CFE88_RS06635 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CFE88_RS06635 IPR016039 Thiolase-like CFE88_RS06640 IPR021324 Protein of unknown function DUF2929 CFE88_RS06645 IPR001270 ClpA/B family CFE88_RS06645 IPR003593 AAA+ ATPase domain CFE88_RS06645 IPR003959 ATPase, AAA-type, core CFE88_RS06645 IPR004176 Clp, N-terminal CFE88_RS06645 IPR017730 Chaperonin ClpB CFE88_RS06645 IPR018368 ClpA/B, conserved site 1 CFE88_RS06645 IPR019489 Clp ATPase, C-terminal CFE88_RS06645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06645 IPR028299 ClpA/B, conserved site 2 CFE88_RS06650 IPR002656 Acyltransferase 3 CFE88_RS06650 IPR013830 CFE88_RS06650 CFE88_RS06655 IPR002744 Domain of unknown function DUF59 CFE88_RS06655 IPR034904 CFE88_RS06655 CFE88_RS06660 IPR000150 Cof protein CFE88_RS06660 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS06660 IPR023214 HAD-like domain CFE88_RS06665 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS06665 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS06665 IPR017758 Coenzyme A disulphide reductase CFE88_RS06665 IPR023536 Coenzyme A disulphide reductase, staphyolococci CFE88_RS06665 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS06670 IPR010899 Protein of unknown function UPF0344 CFE88_RS06675 IPR011234 Fumarylacetoacetase, C-terminal-related CFE88_RS06680 IPR011335 Restriction endonuclease type II-like CFE88_RS06680 IPR011604 Exonuclease, phage-type/RecB, C-terminal CFE88_RS06680 IPR014017 DNA helicase, UvrD-like, C-terminal CFE88_RS06680 IPR014152 DNA helicase subunit AddA CFE88_RS06680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06680 IPR034739 CFE88_RS06680 CFE88_RS06685 IPR014017 DNA helicase, UvrD-like, C-terminal CFE88_RS06685 IPR014140 DNA helicase subunit AddB CFE88_RS06685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06690 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS06690 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS06690 IPR019756 Peptidase S26A, signal peptidase I, serine active site CFE88_RS06690 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CFE88_RS06690 IPR019758 Peptidase S26A, signal peptidase I, conserved site CFE88_RS06695 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS06695 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS06700 IPR032816 CFE88_RS06700 CFE88_RS06710 IPR001672 Phosphoglucose isomerase (PGI) CFE88_RS06710 IPR018189 Phosphoglucose isomerase, conserved site CFE88_RS06715 IPR001518 Argininosuccinate synthase CFE88_RS06715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06715 IPR018223 Argininosuccinate synthase, conserved site CFE88_RS06715 IPR023434 Argininosuccinate synthase, type 1 subfamily CFE88_RS06715 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CFE88_RS06720 IPR000362 Fumarate lyase family CFE88_RS06720 IPR008948 L-Aspartase-like CFE88_RS06720 IPR009049 Argininosuccinate lyase CFE88_RS06720 IPR020557 Fumarate lyase, conserved site CFE88_RS06720 IPR022761 Fumarate lyase, N-terminal CFE88_RS06720 IPR024083 Fumarase/histidase, N-terminal CFE88_RS06720 IPR029419 Argininosuccinate lyase, C-terminal CFE88_RS06725 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain CFE88_RS06725 IPR030395 CFE88_RS06725 CFE88_RS06730 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CFE88_RS06730 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CFE88_RS06730 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CFE88_RS06730 IPR014362 Glutamate dehydrogenase CFE88_RS06730 IPR016040 NAD(P)-binding domain CFE88_RS06730 IPR033524 CFE88_RS06730 CFE88_RS06735 IPR004636 Acetylornithine/Succinylornithine transaminase family CFE88_RS06735 IPR005814 Aminotransferase class-III CFE88_RS06735 IPR010164 Ornithine aminotransferase CFE88_RS06735 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS06735 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS06735 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06735 IPR034757 CFE88_RS06735 CFE88_RS06740 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CFE88_RS06740 IPR013785 Aldolase-type TIM barrel CFE88_RS06745 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS06745 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS06745 IPR022967 RNA-binding domain, S1 CFE88_RS06750 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CFE88_RS06750 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CFE88_RS06750 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CFE88_RS06750 IPR029000 Cyclophilin-like domain CFE88_RS06755 IPR014916 Kinase associated protein B CFE88_RS06760 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal CFE88_RS06760 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase CFE88_RS06760 IPR005663 Monovalent cation proton antiporter subunit A CFE88_RS06760 IPR025383 Domain of unknown function DUF4040 CFE88_RS06765 IPR005281 Monovalent cation:proton antiporter, subunit B CFE88_RS06765 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS06770 IPR006673 Mnh complex subunit C1 CFE88_RS06775 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase CFE88_RS06775 IPR003918 NADH:ubiquinone oxidoreductase CFE88_RS06780 IPR002758 Na+/H+ antiporter subunit E CFE88_RS06785 IPR007208 Na(+)/H(+) antiporter subunit F-like CFE88_RS06790 IPR005133 Na+/H+ antiporter subunit G CFE88_RS06795 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS06795 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase CFE88_RS06800 IPR003736 Phenylacetic acid degradation-related domain CFE88_RS06800 IPR006683 Thioesterase superfamily CFE88_RS06800 IPR029069 HotDog domain CFE88_RS06805 IPR018461 Na+/H+ antiporter, NhaC-like CFE88_RS06805 IPR032813 CFE88_RS06805 CFE88_RS06810 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal CFE88_RS06810 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal CFE88_RS06810 IPR011356 Leucine aminopeptidase/peptidase B CFE88_RS06815 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS06820 IPR000361 FeS cluster biogenesis CFE88_RS06820 IPR016092 FeS cluster insertion protein CFE88_RS06820 IPR017870 FeS cluster insertion, C-terminal, conserved site CFE88_RS06825 IPR009910 Protein of unknown function DUF1450 CFE88_RS06825 IPR022916 Protein of unknown function UPF0349 CFE88_RS06830 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS06835 IPR009190 Protein of unknown function DUF1462 CFE88_RS06835 IPR012336 Thioredoxin-like fold CFE88_RS06840 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal CFE88_RS06840 IPR034904 CFE88_RS06840 CFE88_RS06845 IPR006998 DltD, C-terminal CFE88_RS06845 IPR013830 CFE88_RS06845 CFE88_RS06845 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD CFE88_RS06850 IPR003230 D-alanine--poly(phosphoribitol) ligase subunit 2 CFE88_RS06850 IPR009081 Acyl carrier protein-like CFE88_RS06855 IPR004299 Membrane bound O-acyl transferase, MBOAT CFE88_RS06855 IPR024024 D-alanyl transfer protein DltB CFE88_RS06855 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CFE88_RS06860 IPR000873 AMP-dependent synthetase/ligase CFE88_RS06860 IPR010071 Amino acid adenylation domain CFE88_RS06860 IPR010072 D-alanine--poly(phosphoribitol) ligase subunit 1 CFE88_RS06860 IPR025110 AMP-binding enzyme C-terminal domain CFE88_RS06865 IPR021008 Protein of unknown function DUF3687 CFE88_RS06870 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS06870 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS06870 IPR016040 NAD(P)-binding domain CFE88_RS06870 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS06875 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 CFE88_RS06875 IPR006357 HAD-superfamily hydrolase, subfamily IIA CFE88_RS06875 IPR023214 HAD-like domain CFE88_RS06880 IPR008201 Protein of unknown function DUF86 CFE88_RS06885 IPR021415 Protein of unknown function DUF3055 CFE88_RS06895 IPR009370 Protein of unknown function DUF1027 CFE88_RS06900 IPR003698 Lipoyl synthase CFE88_RS06900 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS06900 IPR007197 Radical SAM CFE88_RS06900 IPR013785 Aldolase-type TIM barrel CFE88_RS06900 IPR031691 CFE88_RS06900 CFE88_RS06905 IPR004843 Calcineurin-like phosphoesterase domain, apaH type CFE88_RS06905 IPR006179 5'-Nucleotidase/apyrase CFE88_RS06905 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS06905 IPR011240 Phosphoesterase-related protein YunD CFE88_RS06905 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06910 IPR002781 Transmembrane protein TauE like CFE88_RS06915 IPR002763 Protein of unknown function DUF72 CFE88_RS06930 IPR002550 Domain of unknown function DUF21 CFE88_RS06930 IPR013785 Aldolase-type TIM barrel CFE88_RS06940 IPR000825 SUF system FeS cluster assembly, SufBD CFE88_RS06940 IPR010231 SUF system FeS cluster assembly, SufB CFE88_RS06945 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal CFE88_RS06950 IPR000192 Aminotransferase class V domain CFE88_RS06950 IPR010970 Cysteine desulfurase, SufS CFE88_RS06950 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS06950 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS06950 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06950 IPR016454 Cysteine desulfurase, NifS CFE88_RS06955 IPR000825 SUF system FeS cluster assembly, SufBD CFE88_RS06955 IPR011542 SUF system FeS cluster assembly, SufD CFE88_RS06960 IPR003439 ABC transporter-like CFE88_RS06960 IPR003593 AAA+ ATPase domain CFE88_RS06960 IPR010230 FeS cluster assembly SUF system, ATPase SufC CFE88_RS06960 IPR017871 ABC transporter, conserved site CFE88_RS06960 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06965 IPR007163 Protein of unknown function DUF368 CFE88_RS06970 IPR008462 CsbD-like CFE88_RS06980 IPR004872 Lipoprotein NlpA family CFE88_RS06985 IPR000515 MetI-like domain CFE88_RS06990 IPR003439 ABC transporter-like CFE88_RS06990 IPR003593 AAA+ ATPase domain CFE88_RS06990 IPR017871 ABC transporter, conserved site CFE88_RS06990 IPR018449 NIL domain CFE88_RS06990 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06995 IPR012336 Thioredoxin-like fold CFE88_RS06995 IPR013766 Thioredoxin domain CFE88_RS07000 IPR006171 Toprim domain CFE88_RS07010 IPR002930 Glycine cleavage system H-protein CFE88_RS07010 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CFE88_RS07010 IPR011053 Single hybrid motif CFE88_RS07010 IPR017453 Glycine cleavage system H-protein, subgroup CFE88_RS07010 IPR033753 CFE88_RS07010 CFE88_RS07015 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS07015 IPR006660 Arsenate reductase-like CFE88_RS07015 IPR012336 Thioredoxin-like fold CFE88_RS07020 IPR012336 Thioredoxin-like fold CFE88_RS07020 IPR013766 Thioredoxin domain CFE88_RS07025 IPR000415 Nitroreductase-like CFE88_RS07025 IPR029479 Nitroreductase CFE88_RS07030 IPR001381 Dehydroquinase class I CFE88_RS07030 IPR013785 Aldolase-type TIM barrel CFE88_RS07035 IPR003718 OsmC/Ohr family CFE88_RS07035 IPR015946 K homology domain-like, alpha/beta CFE88_RS07035 IPR019953 Organic hydroperoxide resistance protein famiy CFE88_RS07045 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07050 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS07050 IPR029033 Histidine phosphatase superfamily CFE88_RS07060 IPR023089 YozE-like domain CFE88_RS07085 IPR008585 Protein of unknown function DUF867 CFE88_RS07100 IPR002059 Cold-shock protein, DNA-binding CFE88_RS07100 IPR011129 Cold shock protein CFE88_RS07100 IPR012156 Cold shock, CspA CFE88_RS07100 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07100 IPR019844 Cold-shock conserved site CFE88_RS07105 IPR002524 Cation efflux protein CFE88_RS07105 IPR027470 Cation efflux protein cytoplasmic domain CFE88_RS07110 IPR009898 Protein of unknown function DUF1440 CFE88_RS07120 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS07125 IPR025356 Protein of unknown function DUF4260 CFE88_RS07135 IPR003445 Cation transporter CFE88_RS07145 IPR010499 Bacterial transcription activator, effector binding CFE88_RS07145 IPR011256 Regulatory factor, effector binding domain CFE88_RS07145 IPR029442 GyrI-like small molecule binding domain CFE88_RS07150 IPR010841 Fibronectin-binding CFE88_RS07150 IPR032330 CFE88_RS07150 CFE88_RS07155 IPR021451 Protein of unknown function DUF3102 CFE88_RS07175 IPR005335 Terminase small subunit CFE88_RS07195 IPR032351 CFE88_RS07195 CFE88_RS07210 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal CFE88_RS07210 IPR006500 DNA primase, phage/plasmid CFE88_RS07210 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal CFE88_RS07210 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07215 IPR014820 Primase, C-terminal 1 CFE88_RS07230 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS07230 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS07235 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS07235 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS07240 IPR002104 Integrase, catalytic CFE88_RS07240 IPR004107 Integrase, SAM-like, N-terminal CFE88_RS07240 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS07240 IPR013762 Integrase-like, catalytic core CFE88_RS07240 IPR023109 Integrase/recombinase, N-terminal CFE88_RS07240 IPR028259 AP2-like integrase, N-terminal domain CFE88_RS07250 IPR000037 SsrA-binding protein CFE88_RS07250 IPR020081 SsrA-binding protein, conserved site CFE88_RS07250 IPR023620 Small protein B CFE88_RS07255 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS07255 IPR004476 Ribonuclease II/ribonuclease R CFE88_RS07255 IPR011129 Cold shock protein CFE88_RS07255 IPR011805 Ribonuclease R CFE88_RS07255 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07255 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 IPR013223 Ribonuclease B, N-terminal OB domain CFE88_RS07255 IPR022966 Ribonuclease II/R, conserved site CFE88_RS07255 IPR022967 RNA-binding domain, S1 CFE88_RS07260 IPR012354 Esterase/lipase CFE88_RS07260 IPR022742 Putative lysophospholipase CFE88_RS07260 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07265 IPR004692 Preprotein translocase SecG subunit CFE88_RS07275 IPR000941 Enolase CFE88_RS07275 IPR020809 Enolase, conserved site CFE88_RS07275 IPR020810 Enolase, C-terminal CFE88_RS07275 IPR020811 Enolase, N-terminal CFE88_RS07275 IPR029017 Enolase N-terminal domain-like CFE88_RS07275 IPR029065 Enolase C-terminal domain-like CFE88_RS07280 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent CFE88_RS07280 IPR006124 Metalloenzyme CFE88_RS07280 IPR011258 BPG-independent PGAM, N-terminal CFE88_RS07280 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha CFE88_RS07280 IPR017850 Alkaline-phosphatase-like, core domain CFE88_RS07285 IPR000652 Triosephosphate isomerase CFE88_RS07285 IPR013785 Aldolase-type TIM barrel CFE88_RS07285 IPR020861 Triosephosphate isomerase, active site CFE88_RS07285 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CFE88_RS07290 IPR001576 Phosphoglycerate kinase CFE88_RS07290 IPR015824 Phosphoglycerate kinase, N-terminal CFE88_RS07295 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CFE88_RS07295 IPR016040 NAD(P)-binding domain CFE88_RS07295 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CFE88_RS07295 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CFE88_RS07295 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CFE88_RS07295 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CFE88_RS07300 IPR007324 Sugar-binding domain, putative CFE88_RS07300 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07310 IPR032615 CFE88_RS07310 CFE88_RS07315 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain CFE88_RS07315 IPR010099 Sugar nucleotide epimerase YfcH,-like putative CFE88_RS07315 IPR013549 Domain of unknown function DUF1731 CFE88_RS07315 IPR016040 NAD(P)-binding domain CFE88_RS07330 IPR001907 ATP-dependent Clp protease proteolytic subunit CFE88_RS07330 IPR018215 ClpP, active site CFE88_RS07330 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CFE88_RS07330 IPR029045 ClpP/crotonase-like domain CFE88_RS07330 IPR033135 CFE88_RS07330 CFE88_RS07340 IPR003802 Sporulation regulator WhiA CFE88_RS07340 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CFE88_RS07340 IPR023054 Sporulation regulator WhiA, C-terminal CFE88_RS07340 IPR027434 Homing endonuclease CFE88_RS07340 IPR033981 CFE88_RS07340 CFE88_RS07345 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CFE88_RS07345 IPR010119 Gluconeogenesis factor CFE88_RS07350 IPR005337 ATPase, P-loop-containing CFE88_RS07350 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07355 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II CFE88_RS07355 IPR005982 Thioredoxin reductase CFE88_RS07355 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CFE88_RS07355 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS07360 IPR011990 Tetratricopeptide-like helical domain CFE88_RS07360 IPR019734 Tetratricopeptide repeat CFE88_RS07365 IPR001451 Bacterial transferase hexapeptide repeat CFE88_RS07365 IPR011004 Trimeric LpxA-like CFE88_RS07365 IPR018357 Hexapeptide transferase, conserved site CFE88_RS07370 IPR001640 Prolipoprotein diacylglyceryl transferase CFE88_RS07375 IPR003755 HPr(Ser) kinase/phosphorylase CFE88_RS07375 IPR011104 HPr kinase/phosphorylase, C-terminal CFE88_RS07375 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CFE88_RS07375 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like CFE88_RS07380 IPR003439 ABC transporter-like CFE88_RS07380 IPR004602 UvrABC system subunit A CFE88_RS07380 IPR017871 ABC transporter, conserved site CFE88_RS07380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07385 IPR001650 Helicase, C-terminal CFE88_RS07385 IPR001943 UVR domain CFE88_RS07385 IPR004807 UvrABC system, subunit B CFE88_RS07385 IPR006935 Helicase/UvrB domain CFE88_RS07385 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS07385 IPR024759 UvrB, YAD/RRR-motif-containing domain CFE88_RS07385 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07395 IPR019242 Protein of unknown function DUF2198 CFE88_RS07405 IPR007921 CHAP domain CFE88_RS07405 IPR018392 LysM domain CFE88_RS07410 IPR000352 Peptide chain release factor class I/class II CFE88_RS07410 IPR004374 Peptide chain release factor 2 CFE88_RS07410 IPR005139 Peptide chain release factor CFE88_RS07410 IPR020853 Peptide chain release factor 2, bacterial CFE88_RS07420 IPR000185 Protein translocase subunit SecA CFE88_RS07420 IPR004027 SEC-C motif CFE88_RS07420 IPR011115 SecA DEAD-like, N-terminal CFE88_RS07420 IPR011116 SecA Wing/Scaffold CFE88_RS07420 IPR011130 SecA preprotein, cross-linking domain CFE88_RS07420 IPR020937 SecA conserved site CFE88_RS07420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07425 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein CFE88_RS07425 IPR032528 CFE88_RS07425 CFE88_RS07425 IPR034694 CFE88_RS07425 CFE88_RS07430 IPR029057 Phosphoribosyltransferase-like CFE88_RS07435 IPR001650 Helicase, C-terminal CFE88_RS07435 IPR006935 Helicase/UvrB domain CFE88_RS07435 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS07435 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07440 IPR003797 DegV CFE88_RS07445 IPR001498 Impact, N-terminal CFE88_RS07445 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CFE88_RS07445 IPR015796 Impact family, bacterial/archaeal CFE88_RS07445 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS07445 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CFE88_RS07445 IPR035647 CFE88_RS07445 CFE88_RS07450 IPR000715 Glycosyl transferase, family 4 CFE88_RS07450 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CFE88_RS07455 IPR000160 GGDEF domain CFE88_RS07455 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CFE88_RS07455 IPR029787 Nucleotide cyclase CFE88_RS07460 IPR010619 Domain of unknown function DUF1212 CFE88_RS07465 IPR024528 Domain of unknown function DUF3815 CFE88_RS07470 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS07470 IPR002933 Peptidase M20 CFE88_RS07470 IPR010161 Peptidase M20B, tripeptide aminopeptidase CFE88_RS07470 IPR011650 Peptidase M20, dimerisation domain CFE88_RS07475 IPR004381 Glycerate kinase CFE88_RS07475 IPR018193 Glycerate kinase, flavodoxin-like domain CFE88_RS07480 IPR012336 Thioredoxin-like fold CFE88_RS07480 IPR022551 Protein of unknown function DUF2847 CFE88_RS07490 IPR007344 GrpB/Dephospho-CoA kinase CFE88_RS07495 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CFE88_RS07495 IPR006094 FAD linked oxidase, N-terminal CFE88_RS07495 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CFE88_RS07495 IPR016166 FAD-binding, type 2 CFE88_RS07495 IPR016167 FAD-binding, type 2, subdomain 1 CFE88_RS07495 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 CFE88_RS07500 IPR008913 Zinc finger, CHY-type CFE88_RS07500 IPR016694 Protein of unknown function UCP017292, zinc finger, CHY-type CFE88_RS07505 IPR002491 ABC transporter periplasmic binding domain CFE88_RS07510 IPR003439 ABC transporter-like CFE88_RS07510 IPR003593 AAA+ ATPase domain CFE88_RS07510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07515 IPR000522 ABC transporter, permease protein CFE88_RS07515 IPR029022 ABC transporter, BtuC-like CFE88_RS07515 IPR035568 CFE88_RS07515 CFE88_RS07520 IPR000522 ABC transporter, permease protein CFE88_RS07520 IPR029022 ABC transporter, BtuC-like CFE88_RS07520 IPR035568 CFE88_RS07520 CFE88_RS07530 IPR000358 Ribonucleotide reductase small subunit CFE88_RS07530 IPR009078 Ferritin-like superfamily CFE88_RS07530 IPR026494 Ribonucleoside reductase subunit beta, NrdF CFE88_RS07535 IPR000788 Ribonucleotide reductase large subunit, C-terminal CFE88_RS07535 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CFE88_RS07535 IPR013346 Ribonucleotide reductase, class I , alpha subunit CFE88_RS07535 IPR013509 Ribonucleotide reductase large subunit, N-terminal CFE88_RS07535 IPR013554 Ribonucleotide reductase N-terminal CFE88_RS07535 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE CFE88_RS07540 IPR004465 Ribonucleotide reductase Class Ib, NrdI CFE88_RS07540 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial CFE88_RS07540 IPR029039 Flavoprotein-like CFE88_RS07545 IPR000620 Drug/metabolite transporter CFE88_RS07550 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 CFE88_RS07550 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF CFE88_RS07555 IPR000109 Proton-dependent oligopeptide transporter family CFE88_RS07555 IPR005279 Amino acid/peptide transporter family CFE88_RS07555 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CFE88_RS07555 IPR020846 Major facilitator superfamily domain CFE88_RS07560 IPR001206 Diacylglycerol kinase, catalytic domain CFE88_RS07560 IPR005218 Diacylglycerol/lipid kinase CFE88_RS07560 IPR016064 ATP-NAD kinase-like domain CFE88_RS07560 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 CFE88_RS07565 IPR001670 Alcohol dehydrogenase, iron-type CFE88_RS07565 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase CFE88_RS07565 IPR015590 Aldehyde dehydrogenase domain CFE88_RS07565 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS07565 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS07565 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CFE88_RS07570 IPR010708 5'(3')-deoxyribonucleotidase CFE88_RS07570 IPR023214 HAD-like domain CFE88_RS07580 IPR000515 MetI-like domain CFE88_RS07580 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS07585 IPR003439 ABC transporter-like CFE88_RS07585 IPR003593 AAA+ ATPase domain CFE88_RS07585 IPR017871 ABC transporter, conserved site CFE88_RS07585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07590 IPR001650 Helicase, C-terminal CFE88_RS07590 IPR002121 HRDC domain CFE88_RS07590 IPR004589 DNA helicase, ATP-dependent, RecQ type CFE88_RS07590 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial CFE88_RS07590 IPR010997 HRDC-like CFE88_RS07590 IPR011545 DEAD/DEAH box helicase domain CFE88_RS07590 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07590 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS07590 IPR018982 RQC domain CFE88_RS07590 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07590 IPR032284 CFE88_RS07590 CFE88_RS07595 IPR003439 ABC transporter-like CFE88_RS07595 IPR003593 AAA+ ATPase domain CFE88_RS07595 IPR017871 ABC transporter, conserved site CFE88_RS07595 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07595 IPR032524 CFE88_RS07595 CFE88_RS07595 IPR032781 CFE88_RS07595 CFE88_RS07600 IPR003689 Zinc/iron permease CFE88_RS07610 IPR000917 Sulfatase CFE88_RS07610 IPR012160 Membrane sulfatase, HI1246-related CFE88_RS07610 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha CFE88_RS07610 IPR017850 Alkaline-phosphatase-like, core domain CFE88_RS07615 IPR003778 Allophanate hydrolase subunit 2 CFE88_RS07615 IPR029000 Cyclophilin-like domain CFE88_RS07620 IPR003833 Allophanate hydrolase subunit 1 CFE88_RS07620 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS07620 IPR029000 Cyclophilin-like domain CFE88_RS07630 IPR001544 Aminotransferase, class IV CFE88_RS07635 IPR005801 ADC synthase CFE88_RS07635 IPR015890 Chorismate binding, C-terminal CFE88_RS07635 IPR019999 Anthranilate synthase component I - like CFE88_RS07640 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CFE88_RS07640 IPR017926 Glutamine amidotransferase CFE88_RS07640 IPR029062 Class I glutamine amidotransferase-like CFE88_RS07645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS07645 IPR018317 Queuosine biosynthesis protein QueC CFE88_RS07650 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein CFE88_RS07655 IPR007197 Radical SAM CFE88_RS07655 IPR017742 7-carboxy-7-deazaguanine synthase CFE88_RS07655 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS07655 IPR024924 7-carboxy-7-deazaguanine synthase-like CFE88_RS07670 IPR019545 DM13 domain CFE88_RS07675 IPR032808 CFE88_RS07675 CFE88_RS07680 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS07680 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS07680 IPR011006 CheY-like superfamily CFE88_RS07680 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07685 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07685 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS07685 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS07690 IPR001173 Glycosyltransferase 2-like CFE88_RS07690 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS07695 IPR018170 Aldo/keto reductase, conserved site CFE88_RS07695 IPR020471 Aldo/keto reductase subgroup CFE88_RS07695 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS07700 IPR000644 CBS domain CFE88_RS07700 IPR002550 Domain of unknown function DUF21 CFE88_RS07700 IPR005170 Transporter-associated domain CFE88_RS07700 IPR016166 FAD-binding, type 2 CFE88_RS07700 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 CFE88_RS07705 IPR003764 N-acetylglucosamine-6-phosphate deacetylase CFE88_RS07705 IPR006680 Amidohydrolase 1 CFE88_RS07705 IPR011059 Metal-dependent hydrolase, composite domain CFE88_RS07705 IPR032466 CFE88_RS07705 CFE88_RS07710 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07710 IPR012337 Ribonuclease H-like domain CFE88_RS07710 IPR032874 CFE88_RS07710 CFE88_RS07715 IPR002577 Helix-turn-helix, HxlR type CFE88_RS07715 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07720 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS07720 IPR012969 Fibrinogen binding protein CFE88_RS07720 IPR019948 Gram-positive anchor CFE88_RS07730 IPR002178 PTS EIIA type-2 domain CFE88_RS07730 IPR003352 Phosphotransferase system, EIIC CFE88_RS07730 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CFE88_RS07730 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS07730 IPR004715 Phosphotransferase system, IIA component fructose subfamily CFE88_RS07730 IPR006327 Phosphotransferase system, fructose IIC component CFE88_RS07730 IPR016152 Phosphotransferase/anion transporter CFE88_RS07735 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS07735 IPR011611 Carbohydrate kinase PfkB CFE88_RS07735 IPR017583 Tagatose/fructose phosphokinase CFE88_RS07735 IPR022463 Fructose 1-phosphate kinase CFE88_RS07735 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain CFE88_RS07735 IPR029056 Ribokinase-like CFE88_RS07740 IPR001034 HTH DeoR N-terminal domain CFE88_RS07740 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07740 IPR014036 DeoR C-terminal sensor domain CFE88_RS07740 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CFE88_RS07750 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CFE88_RS07750 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CFE88_RS07760 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG CFE88_RS07760 IPR011701 Major facilitator superfamily CFE88_RS07760 IPR020846 Major facilitator superfamily domain CFE88_RS07765 IPR009793 Protein of unknown function DUF1361 CFE88_RS07775 IPR002081 Cryptochrome/DNA photolyase, class 1 CFE88_RS07775 IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal CFE88_RS07775 IPR006050 DNA photolyase, N-terminal CFE88_RS07780 IPR001898 Sodium/sulphate symporter CFE88_RS07780 IPR030676 CFE88_RS07780 CFE88_RS07785 IPR001236 Lactate/malate dehydrogenase, N-terminal CFE88_RS07785 IPR001557 L-lactate/malate dehydrogenase CFE88_RS07785 IPR011275 Malate dehydrogenase, type 3 CFE88_RS07785 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CFE88_RS07785 IPR016040 NAD(P)-binding domain CFE88_RS07785 IPR022383 Lactate/malate dehydrogenase, C-terminal CFE88_RS07795 IPR003495 CobW/HypB/UreG domain CFE88_RS07795 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07805 IPR000835 MarR-type HTH domain CFE88_RS07805 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07805 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS07810 IPR003439 ABC transporter-like CFE88_RS07810 IPR003593 AAA+ ATPase domain CFE88_RS07810 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS07810 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC CFE88_RS07810 IPR017871 ABC transporter, conserved site CFE88_RS07810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07815 IPR003439 ABC transporter-like CFE88_RS07815 IPR003593 AAA+ ATPase domain CFE88_RS07815 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS07815 IPR017871 ABC transporter, conserved site CFE88_RS07815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07820 IPR003824 Undecaprenyl-diphosphatase UppP CFE88_RS07825 IPR010499 Bacterial transcription activator, effector binding CFE88_RS07825 IPR011256 Regulatory factor, effector binding domain CFE88_RS07825 IPR029442 GyrI-like small molecule binding domain CFE88_RS07835 IPR003791 Protein of unknown function UPF0178 CFE88_RS07840 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CFE88_RS07840 IPR031100 CFE88_RS07840 CFE88_RS07845 IPR000182 GNAT domain CFE88_RS07845 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07860 IPR009214 Protein of unknown function DUF1129 CFE88_RS07865 IPR007403 Protein of unknown function DUF456 CFE88_RS07870 IPR011701 Major facilitator superfamily CFE88_RS07870 IPR020846 Major facilitator superfamily domain CFE88_RS07875 IPR000847 Transcription regulator HTH, LysR CFE88_RS07875 IPR005119 LysR, substrate-binding CFE88_RS07875 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07880 IPR007295 Domain of unknown function DUF402 CFE88_RS07890 IPR000951 Phthalate dioxygenase reductase CFE88_RS07890 IPR000971 Globin CFE88_RS07890 IPR001433 Oxidoreductase FAD/NAD(P)-binding CFE88_RS07890 IPR008333 Oxidoreductase, FAD-binding domain CFE88_RS07890 IPR009050 Globin-like CFE88_RS07890 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS07895 IPR012312 Haemerythrin/HHE cation-binding motif CFE88_RS07895 IPR019903 Repair of iron centres family CFE88_RS07895 IPR023551 Iron-sulfur cluster repair protein ScdA CFE88_RS07900 IPR009327 Protein of unknown function DUF985 CFE88_RS07900 IPR011051 RmlC-like cupin domain CFE88_RS07900 IPR014710 RmlC-like jelly roll fold CFE88_RS07905 IPR002876 Transcriptional regulator TACO1-like CFE88_RS07905 IPR017856 Integrase, N-terminal zinc-binding domain-like CFE88_RS07905 IPR026562 Probable transcriptional regulatory protein YeeN CFE88_RS07905 IPR026564 Transcriptional regulator TACO1-like, domain 3 CFE88_RS07905 IPR029072 YebC-like CFE88_RS07910 IPR010166 Accessory regulator, Staphylococcus CFE88_RS07910 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07915 IPR009057 Homeodomain-like CFE88_RS07915 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS07915 IPR018062 HTH domain AraC-type, conserved site CFE88_RS07920 IPR006214 Bax inhibitor 1-related CFE88_RS07925 IPR007921 CHAP domain CFE88_RS07925 IPR018392 LysM domain CFE88_RS07930 IPR001204 Phosphate transporter CFE88_RS07935 IPR018445 Putitive phosphate transport regulator CFE88_RS07940 IPR003838 Permease FtsX-like CFE88_RS07940 IPR027022 ABC transporter permease protein, BceB-type CFE88_RS07945 IPR003439 ABC transporter-like CFE88_RS07945 IPR003593 AAA+ ATPase domain CFE88_RS07945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07950 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07950 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS07955 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS07955 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS07955 IPR011006 CheY-like superfamily CFE88_RS07955 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07955 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS07960 IPR016040 NAD(P)-binding domain CFE88_RS07965 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07970 IPR013094 Alpha/beta hydrolase fold-3 CFE88_RS07970 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07985 IPR003439 ABC transporter-like CFE88_RS07985 IPR003593 AAA+ ATPase domain CFE88_RS07985 IPR017871 ABC transporter, conserved site CFE88_RS07985 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07990 IPR003740 Membrane Protein of unknown function DUF161 CFE88_RS07990 IPR019264 Domain of unknown function DUF2179 CFE88_RS07995 IPR002668 Concentrative nucleoside transporter N-terminal domain CFE88_RS07995 IPR011657 Concentrative nucleoside transporter C-terminal domain CFE88_RS08000 IPR003439 ABC transporter-like CFE88_RS08000 IPR003593 AAA+ ATPase domain CFE88_RS08000 IPR011527 ABC transporter type 1, transmembrane domain CFE88_RS08000 IPR017871 ABC transporter, conserved site CFE88_RS08000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08005 IPR004821 Cytidyltransferase-like domain CFE88_RS08005 IPR006409 Glycerol-3-phosphate cytidylyltransferase CFE88_RS08005 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08010 IPR001173 Glycosyltransferase 2-like CFE88_RS08010 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08015 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS08020 IPR013525 ABC-2 type transporter CFE88_RS08025 IPR003439 ABC transporter-like CFE88_RS08025 IPR003593 AAA+ ATPase domain CFE88_RS08025 IPR017871 ABC transporter, conserved site CFE88_RS08025 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08030 IPR004629 Glycosyl transferase WecB/TagA/CpsF CFE88_RS08030 IPR034714 CFE88_RS08030 CFE88_RS08040 IPR001367 Iron dependent repressor-like, metal binding and dimerisation domain CFE88_RS08040 IPR007167 Ferrous iron transporter FeoA domain CFE88_RS08040 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08040 IPR022687 Iron dependent repressor, N-terminal CFE88_RS08040 IPR022689 Iron dependent repressor, diptheria toxin type CFE88_RS08045 IPR003439 ABC transporter-like CFE88_RS08045 IPR003593 AAA+ ATPase domain CFE88_RS08045 IPR017871 ABC transporter, conserved site CFE88_RS08045 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08050 IPR001626 ABC-3 CFE88_RS08050 IPR029022 ABC transporter, BtuC-like CFE88_RS08050 IPR035568 CFE88_RS08050 CFE88_RS08055 IPR006127 Periplasmic solute binding protein family CFE88_RS08055 IPR006128 Adhesion lipoprotein CFE88_RS08055 IPR006129 Adhesin B CFE88_RS08060 IPR006153 Cation/H+ exchanger CFE88_RS08065 IPR005133 Na+/H+ antiporter subunit G CFE88_RS08070 IPR007208 Na(+)/H(+) antiporter subunit F-like CFE88_RS08075 IPR002758 Na+/H+ antiporter subunit E CFE88_RS08080 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase CFE88_RS08080 IPR003918 NADH:ubiquinone oxidoreductase CFE88_RS08090 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS08095 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal CFE88_RS08095 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase CFE88_RS08095 IPR025383 Domain of unknown function DUF4040 CFE88_RS08105 IPR021321 Protein of unknown function DUF2922 CFE88_RS08120 IPR006750 Protein of unknown function DUF606 CFE88_RS08130 IPR010166 Accessory regulator, Staphylococcus CFE88_RS08130 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08135 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08135 IPR000639 Epoxide hydrolase-like CFE88_RS08135 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08140 IPR020846 Major facilitator superfamily domain CFE88_RS08150 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08150 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08155 IPR006439 HAD hydrolase, subfamily IA CFE88_RS08155 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CFE88_RS08155 IPR023214 HAD-like domain CFE88_RS08160 IPR000522 ABC transporter, permease protein CFE88_RS08160 IPR029022 ABC transporter, BtuC-like CFE88_RS08160 IPR035568 CFE88_RS08160 CFE88_RS08165 IPR002491 ABC transporter periplasmic binding domain CFE88_RS08175 IPR000551 MerR-type HTH domain CFE88_RS08175 IPR009061 DNA binding domain, putative CFE88_RS08175 IPR012925 TipAS antibiotic-recognition domain CFE88_RS08180 IPR003265 HhH-GPD domain CFE88_RS08180 IPR011257 DNA glycosylase CFE88_RS08180 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CFE88_RS08185 IPR001278 Arginine-tRNA ligase CFE88_RS08185 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08185 IPR005148 Arginyl tRNA synthetase N-terminal domain CFE88_RS08185 IPR008909 DALR anticodon binding CFE88_RS08185 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS08185 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08185 IPR035684 CFE88_RS08185 CFE88_RS08190 IPR012674 Calycin CFE88_RS08190 IPR015231 Protein of unknown function DUF1934 CFE88_RS08205 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS08205 IPR011032 GroES (chaperonin 10)-like CFE88_RS08205 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS08205 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS08205 IPR016040 NAD(P)-binding domain CFE88_RS08205 IPR020843 Polyketide synthase, enoylreductase CFE88_RS08205 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS08210 IPR018657 Domain of unknown function DUF2088 CFE88_RS08215 IPR005232 Conserved hypothetical protein CHP00268 CFE88_RS08215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08215 IPR022310 NAD/GMP synthase CFE88_RS08220 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain CFE88_RS08225 IPR002822 Uncharacterised protein family UPF0272 CFE88_RS08225 IPR035108 CFE88_RS08225 CFE88_RS08230 IPR014852 Uncharacterised protein YwhD CFE88_RS08235 IPR003607 HD/PDEase domain CFE88_RS08235 IPR006674 HD domain CFE88_RS08240 IPR000182 GNAT domain CFE88_RS08240 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08245 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08245 IPR012337 Ribonuclease H-like domain CFE88_RS08245 IPR032874 CFE88_RS08245 CFE88_RS08250 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS08250 IPR009057 Homeodomain-like CFE88_RS08255 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS08260 IPR004869 Membrane transport protein, MMPL domain CFE88_RS08265 IPR018170 Aldo/keto reductase, conserved site CFE88_RS08265 IPR020471 Aldo/keto reductase subgroup CFE88_RS08265 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS08270 IPR000944 Transcription regulator Rrf2-like CFE88_RS08270 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08275 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS08275 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS08275 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS08275 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS08280 IPR009910 Protein of unknown function DUF1450 CFE88_RS08280 IPR020880 Protein of unknown function UPF0741 CFE88_RS08285 IPR005917 Phosphomevalonate kinase, Gram-positive CFE88_RS08285 IPR006204 GHMP kinase N-terminal domain CFE88_RS08285 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08285 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08285 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08290 IPR005935 Diphosphomevalonate/phosphomevalonate decarboxylase CFE88_RS08290 IPR006204 GHMP kinase N-terminal domain CFE88_RS08290 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08290 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08290 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08290 IPR029765 Diphosphomevalonate decarboxylase CFE88_RS08295 IPR006203 GHMP kinase, ATP-binding, conserved site CFE88_RS08295 IPR006204 GHMP kinase N-terminal domain CFE88_RS08295 IPR006205 Mevalonate kinase CFE88_RS08295 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08295 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08295 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08300 IPR004143 Biotin/lipoate A/B protein ligase CFE88_RS08300 IPR024897 Octanoyltransferase LipL CFE88_RS08305 IPR002505 Phosphate acetyl/butaryl transferase CFE88_RS08305 IPR004614 Phosphate acetyltransferase CFE88_RS08305 IPR012147 Phosphate acetyl/butyryltransferase CFE88_RS08310 IPR010644 Chlorite dismutase CFE88_RS08310 IPR011008 Dimeric alpha-beta barrel CFE88_RS08310 IPR031332 CFE88_RS08310 CFE88_RS08315 IPR010619 Domain of unknown function DUF1212 CFE88_RS08320 IPR024528 Domain of unknown function DUF3815 CFE88_RS08325 IPR002293 Amino acid/polyamine transporter I CFE88_RS08330 IPR006696 Protein of unknown function DUF423 CFE88_RS08335 IPR035218 CFE88_RS08335 CFE88_RS08340 IPR002043 Uracil-DNA glycosylase CFE88_RS08340 IPR005122 Uracil-DNA glycosylase-like CFE88_RS08340 IPR018085 Uracil-DNA glycosylase, active site CFE88_RS08345 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS08345 IPR029132 Choloylglycine hydrolase/NAAA C-terminal CFE88_RS08350 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CFE88_RS08350 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CFE88_RS08350 IPR029056 Ribokinase-like CFE88_RS08355 IPR035374 CFE88_RS08355 CFE88_RS08360 IPR005829 Sugar transporter, conserved site CFE88_RS08360 IPR011701 Major facilitator superfamily CFE88_RS08360 IPR020846 Major facilitator superfamily domain CFE88_RS08370 IPR016994 Uncharacterised conserved protein UCP032370, VraC CFE88_RS08375 IPR002155 Thiolase CFE88_RS08375 IPR016039 Thiolase-like CFE88_RS08375 IPR020613 Thiolase, conserved site CFE88_RS08375 IPR020616 Thiolase, N-terminal CFE88_RS08375 IPR020617 Thiolase, C-terminal CFE88_RS08380 IPR000873 AMP-dependent synthetase/ligase CFE88_RS08380 IPR020845 AMP-binding, conserved site CFE88_RS08385 IPR023198 Phosphoglycolate phosphatase, domain 2 CFE88_RS08385 IPR023214 HAD-like domain CFE88_RS08390 IPR001347 Sugar isomerase (SIS) CFE88_RS08390 IPR017552 3-hexulose-6-phosphate isomerase CFE88_RS08395 IPR001754 Orotidine 5'-phosphate decarboxylase domain CFE88_RS08395 IPR011060 Ribulose-phosphate binding barrel CFE88_RS08395 IPR013785 Aldolase-type TIM barrel CFE88_RS08395 IPR017553 3-hexulose-6-phosphate synthase CFE88_RS08400 IPR004547 Glucosamine-6-phosphate isomerase CFE88_RS08400 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase CFE88_RS08400 IPR018321 Glucosamine-6-phosphate isomerase, conserved site CFE88_RS08405 IPR014934 Protein of unknown function DUF1806 CFE88_RS08410 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related CFE88_RS08410 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 CFE88_RS08410 IPR024078 Putative deacetylase LmbE-like domain CFE88_RS08415 IPR003801 GTP cyclohydrolase FolE2/MptA CFE88_RS08415 IPR022838 GTP cyclohydrolase FolE2 CFE88_RS08420 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS08420 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08420 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS08425 IPR000802 Arsenical pump membrane protein, ArsB CFE88_RS08430 IPR014064 Arsenate reductase ArsC CFE88_RS08430 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS08435 IPR001296 Glycosyl transferase, family 1 CFE88_RS08440 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS08440 IPR008966 Adhesion domain CFE88_RS08440 IPR011252 Fibrogen-binding domain 1 CFE88_RS08440 IPR011266 Fibrinogen-binding domain 2 CFE88_RS08440 IPR013783 Immunoglobulin-like fold CFE88_RS08440 IPR019948 Gram-positive anchor CFE88_RS08440 IPR033764 CFE88_RS08440 CFE88_RS08445 IPR005025 NADPH-dependent FMN reductase-like CFE88_RS08445 IPR029039 Flavoprotein-like CFE88_RS08450 IPR000150 Cof protein CFE88_RS08450 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS08450 IPR023214 HAD-like domain CFE88_RS08455 IPR016192 APOBEC/CMP deaminase, zinc-binding CFE88_RS08455 IPR016193 Cytidine deaminase-like CFE88_RS08455 IPR028883 tRNA-specific adenosine deaminase CFE88_RS08460 IPR002624 Deoxynucleoside kinase CFE88_RS08460 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08460 IPR031314 CFE88_RS08460 CFE88_RS08465 IPR002624 Deoxynucleoside kinase CFE88_RS08465 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08465 IPR031314 CFE88_RS08465 CFE88_RS08470 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS08470 IPR016040 NAD(P)-binding domain CFE88_RS08475 IPR011251 Luciferase-like domain CFE88_RS08475 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A CFE88_RS08480 IPR006439 HAD hydrolase, subfamily IA CFE88_RS08480 IPR023214 HAD-like domain CFE88_RS08485 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS08490 IPR011032 GroES (chaperonin 10)-like CFE88_RS08490 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS08490 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS08490 IPR016040 NAD(P)-binding domain CFE88_RS08490 IPR034710 CFE88_RS08490 CFE88_RS08495 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CFE88_RS08495 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08495 IPR034683 CFE88_RS08495 CFE88_RS08495 IPR034709 CFE88_RS08495 CFE88_RS08500 IPR001544 Aminotransferase, class IV CFE88_RS08500 IPR005786 Branched-chain amino acid aminotransferase II CFE88_RS08500 IPR018300 Aminotransferase, class IV, conserved site CFE88_RS08505 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain CFE88_RS08505 IPR016040 NAD(P)-binding domain CFE88_RS08515 IPR003462 Ornithine cyclodeaminase/mu-crystallin CFE88_RS08515 IPR016040 NAD(P)-binding domain CFE88_RS08515 IPR023401 Ornithine cyclodeaminase, N-terminal CFE88_RS08520 IPR000182 GNAT domain CFE88_RS08520 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08525 IPR002933 Peptidase M20 CFE88_RS08525 IPR011650 Peptidase M20, dimerisation domain CFE88_RS08525 IPR017439 Amidohydrolase CFE88_RS08530 IPR000795 Elongation factor, GTP-binding domain CFE88_RS08530 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CFE88_RS08530 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 CFE88_RS08530 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CFE88_RS08530 IPR005225 Small GTP-binding protein domain CFE88_RS08530 IPR009000 Translation protein, beta-barrel domain CFE88_RS08530 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CFE88_RS08530 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08530 IPR031157 CFE88_RS08530 CFE88_RS08535 IPR000640 Translation elongation factor EFG, V domain CFE88_RS08535 IPR000795 Elongation factor, GTP-binding domain CFE88_RS08535 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 CFE88_RS08535 IPR004540 Translation elongation factor EFG/EF2 CFE88_RS08535 IPR005225 Small GTP-binding protein domain CFE88_RS08535 IPR005517 Translation elongation factor EFG/EF2, domain IV CFE88_RS08535 IPR009000 Translation protein, beta-barrel domain CFE88_RS08535 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08535 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08535 IPR031157 CFE88_RS08535 CFE88_RS08535 IPR035647 CFE88_RS08535 CFE88_RS08540 IPR000235 Ribosomal protein S5/S7 CFE88_RS08540 IPR005717 Ribosomal protein S7, bacterial/organellar-type CFE88_RS08540 IPR020606 Ribosomal protein S7, conserved site CFE88_RS08540 IPR023798 Ribosomal protein S7 domain CFE88_RS08545 IPR005679 Ribosomal protein S12, bacteria CFE88_RS08545 IPR006032 Ribosomal protein S12/S23 CFE88_RS08545 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08550 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS08550 IPR029064 50S ribosomal protein L30e-like CFE88_RS08555 IPR000722 RNA polymerase, alpha subunit CFE88_RS08555 IPR006592 RNA polymerase, N-terminal CFE88_RS08555 IPR007066 RNA polymerase Rpb1, domain 3 CFE88_RS08555 IPR007080 RNA polymerase Rpb1, domain 1 CFE88_RS08555 IPR007081 RNA polymerase Rpb1, domain 5 CFE88_RS08555 IPR007083 RNA polymerase Rpb1, domain 4 CFE88_RS08555 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CFE88_RS08560 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 CFE88_RS08560 IPR007121 RNA polymerase, beta subunit, conserved site CFE88_RS08560 IPR007641 RNA polymerase Rpb2, domain 7 CFE88_RS08560 IPR007642 RNA polymerase Rpb2, domain 2 CFE88_RS08560 IPR007644 RNA polymerase, beta subunit, protrusion CFE88_RS08560 IPR007645 RNA polymerase Rpb2, domain 3 CFE88_RS08560 IPR010243 DNA-directed RNA polymerase, beta subunit CFE88_RS08560 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CFE88_RS08565 IPR007848 Methyltransferase small domain CFE88_RS08565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS08570 IPR000206 Ribosomal protein L7/L12 CFE88_RS08570 IPR008932 Ribosomal protein L7/L12, oligomerisation CFE88_RS08570 IPR013823 Ribosomal protein L7/L12, C-terminal CFE88_RS08570 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CFE88_RS08575 IPR001790 Ribosomal protein L10/acidic P0 CFE88_RS08575 IPR002363 Ribosomal protein L10, eubacterial, conserved site CFE88_RS08575 IPR022973 Ribosomal protein L10 CFE88_RS08585 IPR002143 Ribosomal protein L1 CFE88_RS08585 IPR005878 Ribosomal protein L1, bacterial-type CFE88_RS08585 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CFE88_RS08585 IPR023673 Ribosomal protein L1, conserved site CFE88_RS08585 IPR023674 Ribosomal protein L1-like CFE88_RS08585 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CFE88_RS08590 IPR000911 Ribosomal protein L11/L12 CFE88_RS08590 IPR006519 Ribosomal protein L11, bacterial-type CFE88_RS08590 IPR020783 Ribosomal protein L11, C-terminal CFE88_RS08590 IPR020784 Ribosomal protein L11, N-terminal CFE88_RS08595 IPR001062 Transcription antitermination protein, NusG CFE88_RS08595 IPR005824 KOW CFE88_RS08595 IPR006645 NusG, N-terminal CFE88_RS08595 IPR008991 Translation protein SH3-like domain CFE88_RS08595 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS08595 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CFE88_RS08600 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit CFE88_RS08600 IPR005807 SecE subunit of protein translocation complex CFE88_RS08600 IPR022943 Preprotein translocase subunit SecE CFE88_RS08605 IPR001705 Ribosomal protein L33 CFE88_RS08605 IPR011332 Zinc-binding ribosomal protein CFE88_RS08605 IPR018264 Ribosomal protein L33, conserved site CFE88_RS08610 IPR007627 RNA polymerase sigma-70 region 2 CFE88_RS08610 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08610 IPR013325 RNA polymerase sigma factor, region 2 CFE88_RS08610 IPR014284 RNA polymerase sigma-70 like domain CFE88_RS08610 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS08615 IPR010298 Protein of unknown function DUF901 CFE88_RS08620 IPR001537 tRNA/rRNA methyltransferase, SpoU type CFE88_RS08620 IPR004441 RNA methyltransferase TrmH family CFE88_RS08620 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CFE88_RS08620 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS08620 IPR029028 Alpha/beta knot methyltransferases CFE88_RS08620 IPR029064 50S ribosomal protein L30e-like CFE88_RS08625 IPR000999 Ribonuclease III domain CFE88_RS08625 IPR008226 Mini-ribonuclease 3 family CFE88_RS08630 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS08630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08630 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CFE88_RS08630 IPR015803 Cysteine-tRNA ligase CFE88_RS08630 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CFE88_RS08630 IPR032678 CFE88_RS08630 CFE88_RS08635 IPR001451 Bacterial transferase hexapeptide repeat CFE88_RS08635 IPR005881 Serine O-acetyltransferase CFE88_RS08635 IPR011004 Trimeric LpxA-like CFE88_RS08635 IPR018357 Hexapeptide transferase, conserved site CFE88_RS08640 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CFE88_RS08640 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08640 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CFE88_RS08640 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CFE88_RS08640 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08640 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CFE88_RS08640 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain CFE88_RS08640 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CFE88_RS08640 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 CFE88_RS08645 IPR002716 PIN domain CFE88_RS08645 IPR002792 TRAM domain CFE88_RS08645 IPR029060 PIN domain-like CFE88_RS08650 IPR003593 AAA+ ATPase domain CFE88_RS08650 IPR004504 DNA repair protein RadA CFE88_RS08650 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08650 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08655 IPR001270 ClpA/B family CFE88_RS08655 IPR001943 UVR domain CFE88_RS08655 IPR003593 AAA+ ATPase domain CFE88_RS08655 IPR003959 ATPase, AAA-type, core CFE88_RS08655 IPR004176 Clp, N-terminal CFE88_RS08655 IPR018368 ClpA/B, conserved site 1 CFE88_RS08655 IPR019489 Clp ATPase, C-terminal CFE88_RS08655 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08655 IPR028299 ClpA/B, conserved site 2 CFE88_RS08660 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CFE88_RS08660 IPR022414 ATP:guanido phosphotransferase, catalytic domain CFE88_RS08660 IPR022415 ATP:guanido phosphotransferase active site CFE88_RS08660 IPR023660 ATP:guanido phosphotransferase, bacterial CFE88_RS08665 IPR001943 UVR domain CFE88_RS08665 IPR025542 YacH protein CFE88_RS08670 IPR008463 Transcriptional repressor of class III stress genes CFE88_RS08675 IPR002668 Concentrative nucleoside transporter N-terminal domain CFE88_RS08675 IPR011642 Nucleoside recognition Gate CFE88_RS08675 IPR011657 Concentrative nucleoside transporter C-terminal domain CFE88_RS08680 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal CFE88_RS08680 IPR003346 Transposase, IS116/IS110/IS902 CFE88_RS08685 IPR002161 PdxT/SNO family CFE88_RS08685 IPR021196 PdxT/SNO family, conserved site CFE88_RS08685 IPR029062 Class I glutamine amidotransferase-like CFE88_RS08690 IPR001852 Pyridoxine biosynthesis protein CFE88_RS08690 IPR011060 Ribulose-phosphate binding barrel CFE88_RS08690 IPR013785 Aldolase-type TIM barrel CFE88_RS08690 IPR033755 CFE88_RS08690 CFE88_RS08695 IPR000524 Transcription regulator HTH, GntR CFE88_RS08695 IPR004839 Aminotransferase, class I/classII CFE88_RS08695 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08695 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS08695 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS08695 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08780 IPR002313 Lysine-tRNA ligase, class II CFE88_RS08780 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CFE88_RS08780 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CFE88_RS08780 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08780 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CFE88_RS08780 IPR034762 CFE88_RS08780 CFE88_RS08785 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CFE88_RS08790 IPR006156 Dihydroneopterin aldolase CFE88_RS08790 IPR006157 Dihydroneopterin aldolase/epimerase domain CFE88_RS08795 IPR000489 Pterin-binding CFE88_RS08795 IPR006390 Dihydropteroate synthase CFE88_RS08795 IPR011005 Dihydropteroate synthase-like CFE88_RS08800 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CFE88_RS08800 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS08800 IPR005856 Cysteine synthase K/M CFE88_RS08800 IPR005859 Cysteine synthase A CFE88_RS08805 IPR000397 Heat shock protein Hsp33 CFE88_RS08805 IPR016153 Heat shock protein Hsp33, N-terminal CFE88_RS08805 IPR016154 Heat shock protein Hsp33, C-terminal CFE88_RS08810 IPR000642 Peptidase M41 CFE88_RS08810 IPR003593 AAA+ ATPase domain CFE88_RS08810 IPR003959 ATPase, AAA-type, core CFE88_RS08810 IPR003960 ATPase, AAA-type, conserved site CFE88_RS08810 IPR005936 Peptidase, FtsH CFE88_RS08810 IPR011546 Peptidase M41, FtsH extracellular CFE88_RS08810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08815 IPR000836 Phosphoribosyltransferase domain CFE88_RS08815 IPR005904 Hypoxanthine phosphoribosyl transferase CFE88_RS08815 IPR029057 Phosphoribosyltransferase-like CFE88_RS08820 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase CFE88_RS08820 IPR012094 Lysidine-tRNA(Ile) synthetase CFE88_RS08820 IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal CFE88_RS08820 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal CFE88_RS08820 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08820 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS08825 IPR003029 Ribosomal protein S1, RNA-binding domain CFE88_RS08825 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08825 IPR022967 RNA-binding domain, S1 CFE88_RS08830 IPR007060 Septum formation initiator FtsL/DivIC CFE88_RS08835 IPR002942 RNA-binding S4 domain CFE88_RS08835 IPR025490 RNA-binding protein, HP1423 type CFE88_RS08840 IPR000878 Tetrapyrrole methylase CFE88_RS08840 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS08840 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS08840 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CFE88_RS08845 IPR002797 Polysaccharide biosynthesis protein CFE88_RS08845 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS08850 IPR001650 Helicase, C-terminal CFE88_RS08850 IPR003711 CarD-like/TRCF domain CFE88_RS08850 IPR004576 Transcription-repair coupling factor CFE88_RS08850 IPR005118 Transcription-repair-coupling factor, C-terminal domain CFE88_RS08850 IPR011545 DEAD/DEAH box helicase domain CFE88_RS08850 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS08850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08855 IPR001328 Peptidyl-tRNA hydrolase CFE88_RS08855 IPR018171 Peptidyl-tRNA hydrolase, conserved site CFE88_RS08860 IPR001021 Ribosomal protein L25, long-form CFE88_RS08860 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain CFE88_RS08860 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain CFE88_RS08860 IPR020057 Ribosomal protein L25, beta domain CFE88_RS08860 IPR029751 Ribosomal protein L25 CFE88_RS08865 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CFE88_RS08865 IPR005946 Ribose-phosphate diphosphokinase CFE88_RS08865 IPR029057 Phosphoribosyltransferase-like CFE88_RS08865 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CFE88_RS08870 IPR001451 Bacterial transferase hexapeptide repeat CFE88_RS08870 IPR005835 Nucleotidyl transferase CFE88_RS08870 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CFE88_RS08870 IPR011004 Trimeric LpxA-like CFE88_RS08870 IPR018357 Hexapeptide transferase, conserved site CFE88_RS08870 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08875 IPR007170 Stage V sporulation protein G CFE88_RS08880 IPR006056 Enamine/imine deaminase YjgF-like CFE88_RS08880 IPR006175 YjgF/Yer057p/UK114 family CFE88_RS08880 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CFE88_RS08885 IPR000836 Phosphoribosyltransferase domain CFE88_RS08885 IPR010078 Pur operon repressor CFE88_RS08885 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08885 IPR015265 Bacterial purine repressor, N-terminal CFE88_RS08885 IPR029057 Phosphoribosyltransferase-like CFE88_RS08890 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase CFE88_RS08890 IPR006204 GHMP kinase N-terminal domain CFE88_RS08890 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08890 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08890 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08895 IPR009366 Veg CFE88_RS08900 IPR001737 Ribosomal RNA adenine methylase transferase CFE88_RS08900 IPR011530 Ribosomal RNA adenine dimethylase CFE88_RS08900 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site CFE88_RS08900 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CFE88_RS08900 IPR023165 rRNA adenine dimethylase-like CFE88_RS08900 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS08905 IPR004466 Ribonuclease M5 CFE88_RS08905 IPR006171 Toprim domain CFE88_RS08905 IPR025156 Ribonuclease M5, C-terminal domain CFE88_RS08910 IPR001130 TatD family CFE88_RS08910 IPR015991 Uncharacterised deoxyribonuclease TatD-type CFE88_RS08910 IPR018228 Deoxyribonuclease, TatD-related, conserved site CFE88_RS08910 IPR032466 CFE88_RS08910 CFE88_RS08915 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CFE88_RS08915 IPR002547 tRNA-binding domain CFE88_RS08915 IPR004495 Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal CFE88_RS08915 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding CFE88_RS08915 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08915 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CFE88_RS08915 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08915 IPR014758 Methionyl-tRNA synthetase CFE88_RS08915 IPR015413 Methionyl/Leucyl tRNA synthetase CFE88_RS08915 IPR023457 Methionine-tRNA synthetase, type 2 CFE88_RS08915 IPR033911 CFE88_RS08915 CFE88_RS08920 IPR000878 Tetrapyrrole methylase CFE88_RS08920 IPR008189 rRNA small subunit methyltransferase I CFE88_RS08920 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS08920 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS08920 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CFE88_RS08925 IPR000305 GIY-YIG nuclease superfamily CFE88_RS08930 IPR007848 Methyltransferase small domain CFE88_RS08930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS08935 IPR010377 Initiation control protein YabA CFE88_RS08940 IPR007557 PSP1, C-terminal CFE88_RS08945 IPR015199 DNA polymerase III, delta subunit, C-terminal CFE88_RS08945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08950 IPR010375 Protein of unknown function DUF970 CFE88_RS08950 IPR011322 Nitrogen regulatory PII-like, alpha/beta CFE88_RS08950 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS08955 IPR018094 Thymidylate kinase CFE88_RS08955 IPR018095 Thymidylate kinase, conserved site CFE88_RS08955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08960 IPR000310 Orn/Lys/Arg decarboxylase, major domain CFE88_RS08960 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CFE88_RS08960 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS08960 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS08960 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08965 IPR000182 GNAT domain CFE88_RS08965 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08985 IPR000093 DNA recombination protein RecR CFE88_RS08985 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CFE88_RS08985 IPR006171 Toprim domain CFE88_RS08985 IPR015967 Recombination protein RecR, conserved site CFE88_RS08985 IPR023627 Recombination protein RecR CFE88_RS08985 IPR023628 Recombination protein RecR, C4-type zinc finger CFE88_RS08990 IPR004401 Nucleoid-associated protein YbaB CFE88_RS08995 IPR001270 ClpA/B family CFE88_RS08995 IPR003593 AAA+ ATPase domain CFE88_RS08995 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CFE88_RS08995 IPR012763 DNA polymerase III, subunit gamma/ tau CFE88_RS08995 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09000 IPR000182 GNAT domain CFE88_RS09000 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS09020 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 CFE88_RS09020 IPR009051 Alpha-helical ferredoxin CFE88_RS09020 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS09020 IPR028261 Dihydroprymidine dehydrogenase domain II CFE88_RS09025 IPR002489 Glutamate synthase, alpha subunit, C-terminal CFE88_RS09025 IPR002932 Glutamate synthase domain CFE88_RS09025 IPR006982 Glutamate synthase, central-N CFE88_RS09025 IPR013785 Aldolase-type TIM barrel CFE88_RS09025 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS09025 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS09030 IPR000847 Transcription regulator HTH, LysR CFE88_RS09030 IPR005119 LysR, substrate-binding CFE88_RS09030 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09035 IPR012507 YibE/F-like CFE88_RS09040 IPR012507 YibE/F-like CFE88_RS09040 IPR014564 Uncharacterised conserved protein UCP031503, transmembrane CFE88_RS09045 IPR000086 NUDIX hydrolase domain CFE88_RS09045 IPR015797 NUDIX hydrolase domain-like CFE88_RS09045 IPR020084 NUDIX hydrolase, conserved site CFE88_RS09055 IPR001296 Glycosyl transferase, family 1 CFE88_RS09055 IPR015397 Domain of unknown function DUF1975 CFE88_RS09060 IPR007921 CHAP domain CFE88_RS09060 IPR018392 LysM domain CFE88_RS09065 IPR004872 Lipoprotein NlpA family CFE88_RS09070 IPR000515 MetI-like domain CFE88_RS09075 IPR003439 ABC transporter-like CFE88_RS09075 IPR003593 AAA+ ATPase domain CFE88_RS09075 IPR017871 ABC transporter, conserved site CFE88_RS09075 IPR018449 NIL domain CFE88_RS09075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09080 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09080 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS09080 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS09080 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09085 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CFE88_RS09085 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS09090 IPR001646 Pentapeptide repeat CFE88_RS09095 IPR000175 Sodium:neurotransmitter symporter CFE88_RS09105 IPR012354 Esterase/lipase CFE88_RS09105 IPR022742 Putative lysophospholipase CFE88_RS09105 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09110 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS09120 IPR018745 Domain of unknown function DUF2294 CFE88_RS09125 IPR018752 Uncharacterised protein family UPF0753 CFE88_RS09130 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal CFE88_RS09130 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase CFE88_RS09140 IPR003495 CobW/HypB/UreG domain CFE88_RS09140 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS09140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09145 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS09145 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS09150 IPR003352 Phosphotransferase system, EIIC CFE88_RS09165 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS09165 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09165 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS09170 IPR004676 Cadmium resistance transporter CFE88_RS09195 IPR005335 Terminase small subunit CFE88_RS09200 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09220 IPR032351 CFE88_RS09220 CFE88_RS09235 IPR007936 Virulence-associated E CFE88_RS09235 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09240 IPR014820 Primase, C-terminal 1 CFE88_RS09245 IPR009942 Protein of unknown function DUF1474 CFE88_RS09260 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS09265 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS09265 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS09265 IPR027910 YdiL-like domain CFE88_RS09285 IPR002104 Integrase, catalytic CFE88_RS09285 IPR011010 DNA breaking-rejoining enzyme, catalytic core CFE88_RS09285 IPR013762 Integrase-like, catalytic core CFE88_RS09290 IPR011664 Abortive infection system protein AbiD/AbiF-like CFE88_RS09295 IPR001674 GMP synthase, C-terminal CFE88_RS09295 IPR004739 GMP synthase, N-terminal CFE88_RS09295 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS09295 IPR017926 Glutamine amidotransferase CFE88_RS09295 IPR022955 GMP synthase CFE88_RS09295 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09300 IPR000644 CBS domain CFE88_RS09300 IPR001093 IMP dehydrogenase/GMP reductase CFE88_RS09300 IPR005990 Inosine-5'-monophosphate dehydrogenase CFE88_RS09300 IPR013785 Aldolase-type TIM barrel CFE88_RS09300 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CFE88_RS09305 IPR006042 Xanthine/uracil permease CFE88_RS09305 IPR006043 Xanthine/uracil/vitamin C permease CFE88_RS09305 IPR017588 Xanthine permease CFE88_RS09310 IPR010079 Xanthine phosphoribosyltransferase CFE88_RS09310 IPR029057 Phosphoribosyltransferase-like CFE88_RS09315 IPR025889 General stress protein 17M-like domain CFE88_RS09335 IPR001991 Sodium:dicarboxylate symporter CFE88_RS09340 IPR000415 Nitroreductase-like CFE88_RS09340 IPR016446 Flavin oxidoreductase Frp family CFE88_RS09340 IPR029479 Nitroreductase CFE88_RS09345 IPR011234 Fumarylacetoacetase, C-terminal-related CFE88_RS09350 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CFE88_RS09350 IPR012336 Thioredoxin-like fold CFE88_RS09350 IPR017559 Alkyl hydroperoxide reductase subunit C CFE88_RS09350 IPR019479 Peroxiredoxin, C-terminal CFE88_RS09350 IPR024706 Peroxiredoxin, AhpC-type CFE88_RS09355 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II CFE88_RS09355 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CFE88_RS09355 IPR012081 Alkyl hydroperoxide reductase subunit F CFE88_RS09355 IPR012336 Thioredoxin-like fold CFE88_RS09355 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS09385 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CFE88_RS09385 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS09385 IPR029033 Histidine phosphatase superfamily CFE88_RS09390 IPR001123 Lysine-type exporter protein (LYSE/YGGA) CFE88_RS09400 IPR007341 Transglycosylase-associated protein CFE88_RS09425 IPR001763 Rhodanese-like domain CFE88_RS09430 IPR000835 MarR-type HTH domain CFE88_RS09430 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09430 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS09435 IPR025356 Protein of unknown function DUF4260 CFE88_RS09440 IPR002818 ThiJ/PfpI CFE88_RS09440 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09460 IPR001648 Ribosomal protein S18 CFE88_RS09460 IPR018275 Ribosomal protein S18, conserved site CFE88_RS09465 IPR000424 Primosome PriB/single-strand DNA-binding CFE88_RS09465 IPR011344 Single-stranded DNA-binding protein CFE88_RS09465 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS09470 IPR000529 Ribosomal protein S6 CFE88_RS09470 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CFE88_RS09470 IPR020814 Ribosomal protein S6, plastid/chloroplast CFE88_RS09470 IPR020815 Ribosomal protein S6, conserved site CFE88_RS09475 IPR002053 Glycoside hydrolase, family 25 CFE88_RS09475 IPR017853 Glycoside hydrolase, superfamily CFE88_RS09485 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CFE88_RS09485 IPR006073 GTP binding domain CFE88_RS09485 IPR012675 Beta-grasp domain CFE88_RS09485 IPR012676 TGS-like CFE88_RS09485 IPR013029 Domain of unknown function DUF933 CFE88_RS09485 IPR023192 TGS-like domain CFE88_RS09485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09490 IPR009296 Protein of unknown function DUF951 CFE88_RS09495 IPR006685 Mechanosensitive ion channel MscS CFE88_RS09495 IPR010920 Like-Sm (LSM) domain CFE88_RS09495 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CFE88_RS09495 IPR011066 Mechanosensitive ion channel MscS, C-terminal CFE88_RS09500 IPR003115 ParB/Sulfiredoxin CFE88_RS09500 IPR004437 ParB/RepB/Spo0J partition protein family CFE88_RS09500 IPR013741 Transcriptional repressor protein KorB CFE88_RS09510 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09510 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS09510 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS09510 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09515 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CFE88_RS09515 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS09515 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS09515 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09520 IPR003171 Methylenetetrahydrofolate reductase CFE88_RS09520 IPR003726 Homocysteine S-methyltransferase CFE88_RS09520 IPR029041 FAD-linked oxidoreductase-like CFE88_RS09525 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal CFE88_RS09525 IPR006276 Cobalamin-independent methionine synthase CFE88_RS09525 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal CFE88_RS09530 IPR007325 Kynurenine formamidase CFE88_RS09535 IPR002155 Thiolase CFE88_RS09535 IPR016039 Thiolase-like CFE88_RS09535 IPR020610 Thiolase, active site CFE88_RS09535 IPR020613 Thiolase, conserved site CFE88_RS09535 IPR020615 Thiolase, acyl-enzyme intermediate active site CFE88_RS09535 IPR020616 Thiolase, N-terminal CFE88_RS09535 IPR020617 Thiolase, C-terminal CFE88_RS09545 IPR023089 YozE-like domain CFE88_RS09550 IPR001387 Cro/C1-type helix-turn-helix domain CFE88_RS09550 IPR010982 Lambda repressor-like, DNA-binding domain CFE88_RS09555 IPR021509 Protein of unknown function DUF3169 CFE88_RS09560 IPR003439 ABC transporter-like CFE88_RS09560 IPR003593 AAA+ ATPase domain CFE88_RS09560 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09565 IPR025699 ABC-2 membrane transporter-like CFE88_RS09575 IPR034660 CFE88_RS09575 CFE88_RS09580 IPR000182 GNAT domain CFE88_RS09580 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS09585 IPR005828 General substrate transporter CFE88_RS09585 IPR005829 Sugar transporter, conserved site CFE88_RS09585 IPR020846 Major facilitator superfamily domain CFE88_RS09590 IPR000223 Peptidase S26A, signal peptidase I CFE88_RS09590 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS09590 IPR019756 Peptidase S26A, signal peptidase I, serine active site CFE88_RS09590 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CFE88_RS09590 IPR019758 Peptidase S26A, signal peptidase I, conserved site CFE88_RS09605 IPR003439 ABC transporter-like CFE88_RS09605 IPR003593 AAA+ ATPase domain CFE88_RS09605 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09610 IPR003838 Permease FtsX-like CFE88_RS09610 IPR027022 ABC transporter permease protein, BceB-type CFE88_RS09620 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS09620 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09625 IPR003838 Permease FtsX-like CFE88_RS09625 IPR025857 MacB-like periplasmic core domain CFE88_RS09630 IPR003439 ABC transporter-like CFE88_RS09630 IPR003593 AAA+ ATPase domain CFE88_RS09630 IPR017871 ABC transporter, conserved site CFE88_RS09630 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09640 IPR006977 Yip1 domain CFE88_RS09650 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS09650 IPR009057 Homeodomain-like CFE88_RS09650 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS09655 IPR021493 Protein of unknown function DUF3147 CFE88_RS09660 IPR021493 Protein of unknown function DUF3147 CFE88_RS09670 IPR003115 ParB/Sulfiredoxin CFE88_RS09670 IPR004437 ParB/RepB/Spo0J partition protein family CFE88_RS09670 IPR023705 Nucleoid occlusion protein CFE88_RS09675 IPR003682 rRNA small subunit methyltransferase G CFE88_RS09675 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like CFE88_RS09680 IPR002218 Glucose-inhibited division protein A-related CFE88_RS09680 IPR004416 Glucose-inhibited division protein A CFE88_RS09680 IPR020595 Glucose-inhibited division protein A-related, conserved site CFE88_RS09680 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS09680 IPR026904 GidA associated domain 3 CFE88_RS09685 IPR004520 tRNA modification GTPase MnmE CFE88_RS09685 IPR005225 Small GTP-binding protein domain CFE88_RS09685 IPR006073 GTP binding domain CFE88_RS09685 IPR018948 GTP-binding protein TrmE, N-terminal CFE88_RS09685 IPR025867 tRNA modification GTPase MnmE C-terminal domain CFE88_RS09685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09690 IPR000100 Ribonuclease P CFE88_RS09690 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS09690 IPR020539 Ribonuclease P, conserved site CFE88_RS09690 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09695 IPR000271 Ribosomal protein L34 CFE88_RS09695 IPR020939 Ribosomal protein L34, conserved site CFE88_RS09700 IPR001957 Chromosomal replication control, initiator DnaA CFE88_RS09700 IPR003593 AAA+ ATPase domain CFE88_RS09700 IPR010921 Trp repressor/replication initiator CFE88_RS09700 IPR013159 Chromosomal replication initiator, DnaA C-terminal CFE88_RS09700 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) CFE88_RS09700 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CFE88_RS09700 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 IPR024633 DnaA N-terminal domain CFE88_RS09700 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09705 IPR001001 DNA polymerase III, beta chain CFE88_RS09705 IPR022634 DNA polymerase III, beta chain, N-terminal CFE88_RS09705 IPR022635 DNA polymerase III, beta chain, C-terminal CFE88_RS09705 IPR022637 DNA polymerase III, beta chain, central CFE88_RS09710 IPR002942 RNA-binding S4 domain CFE88_RS09710 IPR014330 RNA-binding S4-related,YaaA CFE88_RS09715 IPR001238 DNA-binding, RecF CFE88_RS09715 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS09715 IPR018078 DNA-binding, RecF, conserved site CFE88_RS09715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09720 IPR000565 DNA topoisomerase, type IIA, subunit B CFE88_RS09720 IPR001241 DNA topoisomerase, type IIA CFE88_RS09720 IPR002288 DNA gyrase B subunit, C-terminal CFE88_RS09720 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09720 IPR006171 Toprim domain CFE88_RS09720 IPR011557 DNA gyrase, subunit B CFE88_RS09720 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CFE88_RS09720 IPR013759 DNA topoisomerase, type IIA, central domain CFE88_RS09720 IPR013760 DNA topoisomerase, type IIA-like domain CFE88_RS09720 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS09720 IPR018522 DNA topoisomerase, type IIA, conserved site CFE88_RS09720 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09725 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CFE88_RS09725 IPR005743 DNA gyrase, subunit A CFE88_RS09725 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel CFE88_RS09725 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain CFE88_RS09725 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CFE88_RS09725 IPR013760 DNA topoisomerase, type IIA-like domain CFE88_RS09725 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS09725 IPR035516 CFE88_RS09725 CFE88_RS09730 IPR000631 YjeF C-terminal domain CFE88_RS09730 IPR017953 Carbohydrate kinase, predicted, conserved site CFE88_RS09730 IPR029056 Ribokinase-like CFE88_RS09735 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain CFE88_RS09735 IPR002317 Serine-tRNA ligase, type1 CFE88_RS09735 IPR010978 tRNA-binding arm CFE88_RS09735 IPR015866 Serine-tRNA synthetase, type1, N-terminal CFE88_RS09740 IPR005135 Endonuclease/exonuclease/phosphatase CFE88_RS09740 IPR017766 Sphingomyelinase C/phospholipase C CFE88_RS09745 IPR011606 Branched-chain amino acid transport, permease CFE88_RS09750 IPR008407 Branched-chain amino acid transport, AzlD CFE88_RS09755 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS09755 IPR008220 Homoserine acetyltransferase CFE88_RS09755 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09760 IPR018710 Protein of unknown function DUF2232 CFE88_RS09765 IPR000160 GGDEF domain CFE88_RS09765 IPR001667 DDH domain CFE88_RS09765 IPR003156 DHHA1 domain CFE88_RS09765 IPR014528 Predicted signal transduction phosphoesterase, YybT type CFE88_RS09770 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CFE88_RS09770 IPR020069 Ribosomal protein L9, C-terminal CFE88_RS09770 IPR020070 Ribosomal protein L9, N-terminal CFE88_RS09770 IPR020594 Ribosomal protein L9, bacteria/chloroplast CFE88_RS09775 IPR007692 DNA helicase, DnaB type CFE88_RS09775 IPR007693 DNA helicase, DnaB-like, N-terminal CFE88_RS09775 IPR007694 DNA helicase, DnaB-like, C-terminal CFE88_RS09775 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS09775 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09780 IPR001114 Adenylosuccinate synthetase CFE88_RS09780 IPR018220 Adenylosuccinate synthase, active site CFE88_RS09780 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09780 IPR033128 CFE88_RS09780 CFE88_RS09800 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS09800 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS09800 IPR011006 CheY-like superfamily CFE88_RS09800 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09800 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS09805 IPR000014 PAS domain CFE88_RS09805 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09805 IPR003660 HAMP linker domain CFE88_RS09805 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain CFE88_RS09805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS09805 IPR013767 PAS fold CFE88_RS09805 IPR029151 Periplasmic sensor domain-like CFE88_RS09810 IPR009996 Regulatory protein YycH CFE88_RS09815 IPR018604 Regulatory protein YycH-like CFE88_RS09820 IPR001279 Beta-lactamase-like CFE88_RS09825 IPR003742 SPOUT methyltransferase, predicted CFE88_RS09825 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS09825 IPR029028 Alpha/beta knot methyltransferases CFE88_RS09830 IPR003615 HNH nuclease CFE88_RS09830 IPR012337 Ribonuclease H-like domain CFE88_RS09830 IPR028629 CRISPR-associated Cas9/Csn1 family CFE88_RS09830 IPR032240 CFE88_RS09830 CFE88_RS09835 IPR002729 CRISPR-associated protein Cas1 CFE88_RS09835 IPR019855 CRISPR-associated protein Cas1, NMENI subtype CFE88_RS09840 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 CFE88_RS09840 IPR021127 CRISPR associated protein Cas2 CFE88_RS09850 IPR014966 FRG domain CFE88_RS09865 IPR007595 Protein of unknown function DUF576 CFE88_RS09870 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09885 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09885 IPR018647 Domain of unknown function DUF2075 CFE88_RS09885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09890 IPR025984 MazG-like domain CFE88_RS09895 IPR007595 Protein of unknown function DUF576 CFE88_RS09900 IPR009881 Protein of unknown function DUF1433 CFE88_RS09905 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09910 IPR009881 Protein of unknown function DUF1433 CFE88_RS09915 IPR009881 Protein of unknown function DUF1433 CFE88_RS09920 IPR009881 Protein of unknown function DUF1433 CFE88_RS09930 IPR007595 Protein of unknown function DUF576 CFE88_RS09935 IPR000055 Restriction endonuclease, type I, HsdS CFE88_RS09945 IPR007595 Protein of unknown function DUF576 CFE88_RS09950 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09955 IPR001757 Cation-transporting P-type ATPase CFE88_RS09955 IPR008250 P-type ATPase, A domain CFE88_RS09955 IPR018303 P-type ATPase, phosphorylation site CFE88_RS09955 IPR023214 HAD-like domain CFE88_RS09955 IPR023298 P-type ATPase, transmembrane domain CFE88_RS09955 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS09955 IPR027256 Cation-transporting P-type ATPase, subfamily IB CFE88_RS09960 IPR011438 Domain of unknown function DUF1541 CFE88_RS09960 IPR023366 ATP synthase subunit alpha-like domain CFE88_RS09965 IPR001279 Beta-lactamase-like CFE88_RS09965 IPR001763 Rhodanese-like domain CFE88_RS09970 IPR001455 TusA-like domain CFE88_RS09970 IPR001763 Rhodanese-like domain CFE88_RS09970 IPR027396 DsrEFH-like CFE88_RS09970 IPR032836 CFE88_RS09970 CFE88_RS09975 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS09980 IPR002781 Transmembrane protein TauE like CFE88_RS09985 IPR014064 Arsenate reductase ArsC CFE88_RS09985 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS09990 IPR000802 Arsenical pump membrane protein, ArsB CFE88_RS09995 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS09995 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09995 IPR018334 ArsR-type transcription regulator, HTH motif CFE88_RS10000 IPR016300 Arsenical pump ATPase, ArsA/GET3 CFE88_RS10000 IPR025723 Anion-transporting ATPase-like domain CFE88_RS10000 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10000 IPR027541 Arsenical pump-driving ATPase CFE88_RS10005 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD CFE88_RS10010 IPR001845 HTH ArsR-type DNA-binding domain CFE88_RS10010 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10015 IPR005524 Protein of unknown function DUF318, transmembrane CFE88_RS10025 IPR007595 Protein of unknown function DUF576 CFE88_RS10035 IPR007595 Protein of unknown function DUF576 CFE88_RS10040 IPR006685 Mechanosensitive ion channel MscS CFE88_RS10040 IPR010920 Like-Sm (LSM) domain CFE88_RS10040 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CFE88_RS10040 IPR011066 Mechanosensitive ion channel MscS, C-terminal CFE88_RS10045 IPR000182 GNAT domain CFE88_RS10045 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS10065 IPR009881 Protein of unknown function DUF1433 CFE88_RS10085 IPR001269 tRNA-dihydrouridine synthase CFE88_RS10085 IPR013785 Aldolase-type TIM barrel CFE88_RS10085 IPR018517 tRNA-dihydrouridine synthase, conserved site CFE88_RS10085 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal CFE88_RS10090 IPR006231 Malate:quinone-oxidoreductase CFE88_RS10090 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS10095 IPR007269 Isoprenylcysteine carboxyl methyltransferase CFE88_RS10100 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS10100 IPR023214 HAD-like domain CFE88_RS10105 IPR010724 Replication initiator A, N-terminal CFE88_RS10115 IPR009057 Homeodomain-like CFE88_RS10115 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS10115 IPR020449 Transcription regulator HTH, AraC- type CFE88_RS10120 IPR032687 CFE88_RS10120 CFE88_RS10140 IPR019948 Gram-positive anchor CFE88_RS10140 IPR022263 KxYKxGKxW signal peptide CFE88_RS10145 IPR002208 SecY/SEC61-alpha family CFE88_RS10145 IPR014269 Accessory Sec system protein translocase subunit SecY2 CFE88_RS10145 IPR023201 SecY subunit domain CFE88_RS10150 IPR022372 Accessory secretory system protein Asp1 CFE88_RS10155 IPR022267 Accessory Sec system protein Asp2 CFE88_RS10155 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10160 IPR022259 Accessory Sec system protein Asp3 CFE88_RS10165 IPR000185 Protein translocase subunit SecA CFE88_RS10165 IPR011115 SecA DEAD-like, N-terminal CFE88_RS10165 IPR011116 SecA Wing/Scaffold CFE88_RS10165 IPR011130 SecA preprotein, cross-linking domain CFE88_RS10165 IPR022490 Protein translocase subunit SecA2 CFE88_RS10165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10170 IPR001296 Glycosyl transferase, family 1 CFE88_RS10170 IPR014267 Glycosyltransferase Gtf1 CFE88_RS10175 IPR014268 Glycosyltransferase-stabilising protein Gtf2 CFE88_RS10180 IPR025668 Transposase DDE domain CFE88_RS10185 IPR003439 ABC transporter-like CFE88_RS10185 IPR003593 AAA+ ATPase domain CFE88_RS10185 IPR017871 ABC transporter, conserved site CFE88_RS10185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10190 IPR032688 CFE88_RS10190 CFE88_RS10195 IPR004472 Dethiobiotin synthase BioD CFE88_RS10195 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10200 IPR005814 Aminotransferase class-III CFE88_RS10200 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA CFE88_RS10200 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS10200 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10205 IPR004839 Aminotransferase, class I/classII CFE88_RS10205 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS10205 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS10205 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10210 IPR005499 6-carboxyhexanoate--CoA ligase CFE88_RS10215 IPR014728 Staphostatin A/B CFE88_RS10215 IPR015112 Staphostatin A CFE88_RS10215 IPR016085 Protease inhibitor, beta-barrel domain CFE88_RS10220 IPR008750 Staphopain peptidase C47 CFE88_RS10220 IPR025660 Cysteine peptidase, histidine active site CFE88_RS10220 IPR028076 Staphopain proregion CFE88_RS10225 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10225 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10230 IPR007595 Protein of unknown function DUF576 CFE88_RS10235 IPR003495 CobW/HypB/UreG domain CFE88_RS10235 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS10235 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10245 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II CFE88_RS10245 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS10250 IPR006127 Periplasmic solute binding protein family CFE88_RS10250 IPR006128 Adhesion lipoprotein CFE88_RS10250 IPR006129 Adhesin B CFE88_RS10255 IPR003374 ApbE-like domain CFE88_RS10255 IPR024932 Flavin transferase ApbE CFE88_RS10260 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CFE88_RS10260 IPR003953 FAD binding domain CFE88_RS10260 IPR007329 FMN-binding CFE88_RS10260 IPR010960 Flavocytochrome c CFE88_RS10260 IPR013785 Aldolase-type TIM barrel CFE88_RS10260 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS10260 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain CFE88_RS10265 IPR011701 Major facilitator superfamily CFE88_RS10265 IPR020846 Major facilitator superfamily domain CFE88_RS10270 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS10270 IPR014007 Acetoin reductase CFE88_RS10270 IPR016040 NAD(P)-binding domain CFE88_RS10270 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS10275 IPR003439 ABC transporter-like CFE88_RS10275 IPR003593 AAA+ ATPase domain CFE88_RS10275 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10295 IPR031989 CFE88_RS10295 CFE88_RS10315 IPR016935 Protein of unknown function DUF2338 CFE88_RS10320 IPR000914 Bacterial extracellular solute-binding protein, family 5 CFE88_RS10320 IPR011980 Nickel ABC transporter, periplasmic nickel-binding protein CFE88_RS10320 IPR023765 Bacterial extracellular solute-binding protein, family 5, conserved site CFE88_RS10320 IPR030678 CFE88_RS10320 CFE88_RS10325 IPR000515 MetI-like domain CFE88_RS10330 IPR000515 MetI-like domain CFE88_RS10330 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS10335 IPR003439 ABC transporter-like CFE88_RS10335 IPR003593 AAA+ ATPase domain CFE88_RS10335 IPR017871 ABC transporter, conserved site CFE88_RS10335 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10340 IPR003439 ABC transporter-like CFE88_RS10340 IPR003593 AAA+ ATPase domain CFE88_RS10340 IPR017871 ABC transporter, conserved site CFE88_RS10340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10345 IPR011701 Major facilitator superfamily CFE88_RS10345 IPR020846 Major facilitator superfamily domain CFE88_RS10350 IPR001150 Glycine radical domain CFE88_RS10350 IPR004184 Pyruvate formate lyase domain CFE88_RS10350 IPR005949 Formate acetyltransferase CFE88_RS10350 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS10355 IPR001989 Radical-activating enzyme, conserved site CFE88_RS10355 IPR007197 Radical SAM CFE88_RS10355 IPR012838 Pyruvate formate-lyase activating enzyme CFE88_RS10355 IPR012839 Glycyl radical enzyme activase CFE88_RS10360 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS10360 IPR002933 Peptidase M20 CFE88_RS10360 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10360 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10365 IPR004685 Branched-chain amino acid transport system II carrier protein CFE88_RS10370 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS10370 IPR009057 Homeodomain-like CFE88_RS10370 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS10375 IPR008567 3-keto-5-aminohexanoate cleavage enzyme CFE88_RS10375 IPR013785 Aldolase-type TIM barrel CFE88_RS10380 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CFE88_RS10380 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CFE88_RS10380 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS10380 IPR013328 Dehydrogenase, multihelical CFE88_RS10380 IPR016040 NAD(P)-binding domain CFE88_RS10380 IPR026578 L-carnitine dehydrogenase CFE88_RS10385 IPR029069 HotDog domain CFE88_RS10390 IPR000644 CBS domain CFE88_RS10390 IPR003439 ABC transporter-like CFE88_RS10390 IPR003593 AAA+ ATPase domain CFE88_RS10390 IPR005892 Glycine betaine transport ATP-binding subunit CFE88_RS10390 IPR017871 ABC transporter, conserved site CFE88_RS10390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10395 IPR000515 MetI-like domain CFE88_RS10400 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS10405 IPR000515 MetI-like domain CFE88_RS10410 IPR000801 Putative esterase CFE88_RS10410 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10415 IPR018385 C4-dicarboxylate anaerobic carrier-like CFE88_RS10420 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS10420 IPR003964 Carbamate kinase CFE88_RS10425 IPR002292 Ornithine/putrescine carbamoyltransferase CFE88_RS10425 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS10425 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS10425 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS10425 IPR024904 Ornithine carbamoyltransferase CFE88_RS10435 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS10435 IPR022858 Metallothiol transferase FosB CFE88_RS10435 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS10440 IPR005519 Acid phosphatase (Class B) CFE88_RS10440 IPR006423 5-nucleotidase lipoprotein e(P4) CFE88_RS10440 IPR023214 HAD-like domain CFE88_RS10445 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CFE88_RS10445 IPR006638 Elongator protein 3/MiaB/NifB CFE88_RS10445 IPR007197 Radical SAM CFE88_RS10445 IPR010722 Biotin and thiamin synthesis-associated domain CFE88_RS10445 IPR013785 Aldolase-type TIM barrel CFE88_RS10445 IPR024177 Biotin synthase CFE88_RS10450 IPR001670 Alcohol dehydrogenase, iron-type CFE88_RS10455 IPR004006 Dak kinase CFE88_RS10455 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 CFE88_RS10460 IPR004007 DhaL domain CFE88_RS10460 IPR012737 Dihydroxyacetone kinase, subunit L CFE88_RS10465 IPR004701 Phosphotransferase system, mannose-type IIA component CFE88_RS10465 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain CFE88_RS10470 IPR011701 Major facilitator superfamily CFE88_RS10470 IPR020846 Major facilitator superfamily domain CFE88_RS10480 IPR004638 Drug resistance transporter EmrB/QacA subfamily CFE88_RS10480 IPR011701 Major facilitator superfamily CFE88_RS10480 IPR020846 Major facilitator superfamily domain CFE88_RS10490 IPR011701 Major facilitator superfamily CFE88_RS10490 IPR020846 Major facilitator superfamily domain CFE88_RS10495 IPR000873 AMP-dependent synthetase/ligase CFE88_RS10495 IPR001242 Condensation domain CFE88_RS10495 IPR006162 Phosphopantetheine attachment site CFE88_RS10495 IPR009081 Acyl carrier protein-like CFE88_RS10495 IPR010071 Amino acid adenylation domain CFE88_RS10495 IPR013120 Male sterility, NAD-binding CFE88_RS10495 IPR016040 NAD(P)-binding domain CFE88_RS10495 IPR020845 AMP-binding, conserved site CFE88_RS10495 IPR025110 AMP-binding enzyme C-terminal domain CFE88_RS10500 IPR008278 4'-phosphopantetheinyl transferase superfamily CFE88_RS10505 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10505 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10515 IPR003663 Sugar/inositol transporter CFE88_RS10515 IPR005828 General substrate transporter CFE88_RS10515 IPR005829 Sugar transporter, conserved site CFE88_RS10515 IPR020846 Major facilitator superfamily domain CFE88_RS10520 IPR019195 ABC transporter, ATPase, putative CFE88_RS10520 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10525 IPR011235 MepB-like CFE88_RS10530 IPR000620 Drug/metabolite transporter CFE88_RS10530 IPR004626 RarD protein CFE88_RS10535 IPR015168 SsuA/THI5-like CFE88_RS10540 IPR001898 Sodium/sulphate symporter CFE88_RS10540 IPR030676 CFE88_RS10540 CFE88_RS10545 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS10545 IPR006258 Dihydrolipoamide dehydrogenase CFE88_RS10545 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CFE88_RS10545 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS10545 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS10550 IPR001017 Dehydrogenase, E1 component CFE88_RS10550 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10555 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS10555 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II CFE88_RS10555 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10555 IPR033248 CFE88_RS10555 CFE88_RS10560 IPR000089 Biotin/lipoyl attachment CFE88_RS10560 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CFE88_RS10560 IPR004167 E3 binding CFE88_RS10560 IPR011053 Single hybrid motif CFE88_RS10570 IPR000060 BCCT transporter family CFE88_RS10580 IPR000816 Peptidase C15, pyroglutamyl peptidase I CFE88_RS10580 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CFE88_RS10580 IPR029762 Pyroglutamyl peptidase I, bacterial-type CFE88_RS10580 IPR033693 CFE88_RS10580 CFE88_RS10580 IPR033694 CFE88_RS10580 CFE88_RS10585 IPR001763 Rhodanese-like domain CFE88_RS10585 IPR020936 Uncharacterised protein family UPF0176 CFE88_RS10585 IPR022111 Protein of unknown function DUF3650 CFE88_RS10590 IPR011042 Six-bladed beta-propeller, TolB-like CFE88_RS10590 IPR013658 SMP-30/Gluconolactonase/LRE-like region CFE88_RS10595 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS10605 IPR006231 Malate:quinone-oxidoreductase CFE88_RS10605 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS10610 IPR000182 GNAT domain CFE88_RS10610 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS10615 IPR016787 Uncharacterised conserved protein UCP021328 CFE88_RS10620 IPR000485 AsnC-type HTH domain CFE88_RS10620 IPR011008 Dimeric alpha-beta barrel CFE88_RS10620 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10620 IPR019887 Transcription regulator AsnC-type, C-terminal CFE88_RS10620 IPR019888 Transcription regulator AsnC-type CFE88_RS10625 IPR029032 AhpD-like CFE88_RS10635 IPR013820 ATP phosphoribosyltransferase, catalytic domain CFE88_RS10635 IPR024893 ATP phosphoribosyltransferase HisG, short form CFE88_RS10640 IPR001692 Histidinol dehydrogenase, conserved site CFE88_RS10640 IPR012131 Histidinol dehydrogenase CFE88_RS10640 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS10640 IPR022695 Histidinol dehydrogenase, monofunctional CFE88_RS10645 IPR000807 Imidazoleglycerol-phosphate dehydratase CFE88_RS10645 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site CFE88_RS10645 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS10650 IPR010139 Imidazole glycerol phosphate synthase, subunit H CFE88_RS10650 IPR017926 Glutamine amidotransferase CFE88_RS10650 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10655 IPR006062 Histidine biosynthesis CFE88_RS10655 IPR011060 Ribulose-phosphate binding barrel CFE88_RS10655 IPR013785 Aldolase-type TIM barrel CFE88_RS10655 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CFE88_RS10660 IPR004651 Histidine biosynthesis, HisF CFE88_RS10660 IPR006062 Histidine biosynthesis CFE88_RS10660 IPR011060 Ribulose-phosphate binding barrel CFE88_RS10660 IPR013785 Aldolase-type TIM barrel CFE88_RS10665 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain CFE88_RS10665 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase CFE88_RS10665 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like CFE88_RS10665 IPR023019 Histidine biosynthesis bifunctional protein HisIE CFE88_RS10670 IPR001447 Arylamine N-acetyltransferase CFE88_RS10680 IPR005877 YSIRK Gram-positive signal peptide CFE88_RS10680 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10695 IPR011701 Major facilitator superfamily CFE88_RS10695 IPR020846 Major facilitator superfamily domain CFE88_RS10700 IPR004843 Calcineurin-like phosphoesterase domain, apaH type CFE88_RS10700 IPR006146 5'-Nucleotidase, conserved site CFE88_RS10700 IPR006179 5'-Nucleotidase/apyrase CFE88_RS10700 IPR008334 5'-Nucleotidase, C-terminal CFE88_RS10700 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10705 IPR019196 ABC-type uncharacterised transport system CFE88_RS10705 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10710 IPR001638 Extracellular solute-binding protein, family 3 CFE88_RS10710 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic protein CFE88_RS10715 IPR003439 ABC transporter-like CFE88_RS10715 IPR003593 AAA+ ATPase domain CFE88_RS10715 IPR012693 ABC transporter, phosphonate import, PhnC CFE88_RS10715 IPR017871 ABC transporter, conserved site CFE88_RS10715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10720 IPR000515 MetI-like domain CFE88_RS10720 IPR005769 ABC transporter, permease PhnE/PtxC CFE88_RS10725 IPR000515 MetI-like domain CFE88_RS10725 IPR005769 ABC transporter, permease PhnE/PtxC CFE88_RS10735 IPR022267 Accessory Sec system protein Asp2 CFE88_RS10735 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10745 IPR000185 Protein translocase subunit SecA CFE88_RS10745 IPR011115 SecA DEAD-like, N-terminal CFE88_RS10745 IPR011116 SecA Wing/Scaffold CFE88_RS10745 IPR011130 SecA preprotein, cross-linking domain CFE88_RS10745 IPR022490 Protein translocase subunit SecA2 CFE88_RS10745 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10750 IPR001296 Glycosyl transferase, family 1 CFE88_RS10750 IPR014267 Glycosyltransferase Gtf1 CFE88_RS10755 IPR014268 Glycosyltransferase-stabilising protein Gtf2 CFE88_RS10765 IPR002569 Peptide methionine sulphoxide reductase MsrA CFE88_RS10775 IPR011701 Major facilitator superfamily CFE88_RS10775 IPR020846 Major facilitator superfamily domain CFE88_RS10780 IPR002563 Flavin reductase-like, FMN-binding CFE88_RS10780 IPR012349 FMN-binding split barrel CFE88_RS10795 IPR003718 OsmC/Ohr family CFE88_RS10795 IPR015946 K homology domain-like, alpha/beta CFE88_RS10795 IPR019953 Organic hydroperoxide resistance protein famiy CFE88_RS10805 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CFE88_RS10805 IPR007921 CHAP domain CFE88_RS10810 IPR017500 Phage infection protein, YhgE, N-terminal CFE88_RS10810 IPR017501 Phage infection protein, YhgE, C-terminal CFE88_RS10820 IPR002178 PTS EIIA type-2 domain CFE88_RS10820 IPR003352 Phosphotransferase system, EIIC CFE88_RS10820 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CFE88_RS10820 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CFE88_RS10820 IPR004715 Phosphotransferase system, IIA component fructose subfamily CFE88_RS10820 IPR006327 Phosphotransferase system, fructose IIC component CFE88_RS10820 IPR016152 Phosphotransferase/anion transporter CFE88_RS10830 IPR008846 Staphylococcal hemolytic protein family CFE88_RS10835 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS10835 IPR014007 Acetoin reductase CFE88_RS10835 IPR016040 NAD(P)-binding domain CFE88_RS10835 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS10845 IPR012873 Protein of unknown function DUF1672 CFE88_RS10855 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CFE88_RS10855 IPR002933 Peptidase M20 CFE88_RS10855 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10855 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10860 IPR001570 Peptidase M4, C-terminal CFE88_RS10860 IPR011096 FTP domain CFE88_RS10860 IPR013856 Peptidase M4 domain CFE88_RS10860 IPR023612 Peptidase M4 CFE88_RS10860 IPR025711 PepSY domain CFE88_RS10865 IPR001669 Arginine repressor CFE88_RS10865 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10865 IPR020899 Arginine repressor, C-terminal CFE88_RS10865 IPR020900 Arginine repressor, DNA-binding domain CFE88_RS10865 IPR024946 Arginine repressor C-terminal-like domain CFE88_RS10870 IPR003876 Arginine deiminase CFE88_RS10875 IPR002292 Ornithine/putrescine carbamoyltransferase CFE88_RS10875 IPR006130 Aspartate/ornithine carbamoyltransferase CFE88_RS10875 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CFE88_RS10875 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CFE88_RS10875 IPR024904 Ornithine carbamoyltransferase CFE88_RS10880 IPR002293 Amino acid/polyamine transporter I CFE88_RS10880 IPR004754 Amino acid antiporter CFE88_RS10880 IPR022461 Arginine/ornithine antiporter CFE88_RS10885 IPR000595 Cyclic nucleotide-binding domain CFE88_RS10885 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10885 IPR012318 Helix-turn-helix motif, Crp-type CFE88_RS10885 IPR014710 RmlC-like jelly roll fold CFE88_RS10885 IPR018490 Cyclic nucleotide-binding-like CFE88_RS10890 IPR000801 Putative esterase CFE88_RS10890 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10895 IPR019079 Capsule synthesis protein, CapA CFE88_RS10895 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10905 IPR000399 TPP-binding enzyme, conserved site CFE88_RS10905 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS10905 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS10905 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS10905 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme CFE88_RS10905 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS10905 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10910 IPR000835 MarR-type HTH domain CFE88_RS10910 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10915 IPR007921 CHAP domain CFE88_RS10920 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10925 IPR023838 Type VII secretion system EsaA CFE88_RS10930 IPR018920 WXG100 secretion system EssA CFE88_RS10930 IPR034026 CFE88_RS10930 CFE88_RS10935 IPR024962 YukD-like CFE88_RS10935 IPR029071 Ubiquitin-related domain CFE88_RS10940 IPR018778 Type VII secretion system EssB CFE88_RS10940 IPR032675 CFE88_RS10940 CFE88_RS10945 IPR002543 FtsK domain CFE88_RS10945 IPR008984 SMAD/FHA domain CFE88_RS10945 IPR022206 Firmicutes EssC, N-terminal CFE88_RS10945 IPR023839 Firmicutes EssC, C-terminal CFE88_RS10945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10955 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10960 IPR031682 CFE88_RS10960 CFE88_RS10975 IPR006728 Protein of unknown function DUF600 CFE88_RS10985 IPR006728 Protein of unknown function DUF600 CFE88_RS11000 IPR031681 CFE88_RS11000 CFE88_RS11005 IPR031676 CFE88_RS11005 CFE88_RS11010 IPR028075 Domain of unknown function with cystatin-like fold DUF4467 CFE88_RS11015 IPR025273 Domain of unknown function DUF4064 CFE88_RS11020 IPR031666 CFE88_RS11020 CFE88_RS11025 IPR031690 CFE88_RS11025 CFE88_RS11040 IPR032869 CFE88_RS11040 CFE88_RS11065 IPR006728 Protein of unknown function DUF600 CFE88_RS11070 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 IPR006728 Protein of unknown function DUF600 CFE88_RS11080 IPR006120 Resolvase, HTH domain CFE88_RS11100 IPR008585 Protein of unknown function DUF867 CFE88_RS11105 IPR022561 Protein of unknown function DUF2648 CFE88_RS11110 IPR007554 CDP-glycerol glycerophosphotransferase CFE88_RS11115 IPR016040 NAD(P)-binding domain CFE88_RS11120 IPR001952 Alkaline phosphatase CFE88_RS11120 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha CFE88_RS11120 IPR017850 Alkaline-phosphatase-like, core domain CFE88_RS11120 IPR018299 Alkaline phosphatase, active site CFE88_RS11130 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS11130 IPR001867 Signal transduction response regulator, C-terminal CFE88_RS11130 IPR011006 CheY-like superfamily CFE88_RS11130 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11130 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS11135 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS11135 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CFE88_RS11140 IPR003439 ABC transporter-like CFE88_RS11140 IPR003593 AAA+ ATPase domain CFE88_RS11140 IPR017871 ABC transporter, conserved site CFE88_RS11140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11145 IPR003838 Permease FtsX-like CFE88_RS11145 IPR027022 ABC transporter permease protein, BceB-type CFE88_RS11150 IPR025273 Domain of unknown function DUF4064 CFE88_RS11160 IPR001734 Sodium/solute symporter CFE88_RS11165 IPR001734 Sodium/solute symporter CFE88_RS11180 IPR025874 Double zinc ribbon CFE88_RS11180 IPR026898 Protease PrsW CFE88_RS11185 IPR015943 WD40/YVTN repeat-like-containing domain CFE88_RS11190 IPR000835 MarR-type HTH domain CFE88_RS11190 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11200 IPR000889 Glutathione peroxidase CFE88_RS11200 IPR012336 Thioredoxin-like fold CFE88_RS11210 IPR002500 Phosphoadenosine phosphosulphate reductase CFE88_RS11210 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase CFE88_RS11210 IPR011798 Adenosine 5'-phosphosulphate reductase CFE88_RS11210 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11215 IPR001094 Flavodoxin CFE88_RS11215 IPR001433 Oxidoreductase FAD/NAD(P)-binding CFE88_RS11215 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CFE88_RS11215 IPR003097 FAD-binding, type 1 CFE88_RS11215 IPR008254 Flavodoxin/nitric oxide synthase CFE88_RS11215 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain CFE88_RS11215 IPR017938 Riboflavin synthase-like beta-barrel CFE88_RS11215 IPR029039 Flavoprotein-like CFE88_RS11220 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CFE88_RS11220 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site CFE88_RS11220 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CFE88_RS11220 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit CFE88_RS11225 IPR000878 Tetrapyrrole methylase CFE88_RS11225 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CFE88_RS11225 IPR006366 Uroporphyrin-III C-methyltransferase CFE88_RS11225 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS11225 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS11230 IPR006367 Sirohaem synthase, N-terminal CFE88_RS11230 IPR016040 NAD(P)-binding domain CFE88_RS11235 IPR002781 Transmembrane protein TauE like CFE88_RS11240 IPR002650 Sulphate adenylyltransferase CFE88_RS11240 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11240 IPR015947 PUA-like domain CFE88_RS11240 IPR020792 Sulphate adenylyltransferase, subgroup CFE88_RS11240 IPR024951 Sulphate adenylyltransferase catalytic domain CFE88_RS11240 IPR025980 ATP-sulfurylase PUA-like domain CFE88_RS11245 IPR002891 Adenylylsulphate kinase CFE88_RS11245 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11255 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic CFE88_RS11255 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS11260 IPR007197 Radical SAM CFE88_RS11260 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic CFE88_RS11260 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS11265 IPR004668 Anaerobic c4-dicarboxylate membrane transporter CFE88_RS11270 IPR000060 BCCT transporter family CFE88_RS11270 IPR018093 BCCT transporter, conserved site CFE88_RS11275 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11275 IPR026282 DNA-binding protein, MJ1563 type CFE88_RS11280 IPR011264 NAD/NADP-dependent betaine aldehyde dehydrogenase CFE88_RS11280 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11280 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11280 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11280 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11280 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11285 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal CFE88_RS11285 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal CFE88_RS11285 IPR011533 Oxygen-dependent choline dehydrogenase CFE88_RS11285 IPR012132 Glucose-methanol-choline oxidoreductase CFE88_RS11285 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS11290 IPR023089 YozE-like domain CFE88_RS11295 IPR007138 Antibiotic biosynthesis monooxygenase-like domain CFE88_RS11295 IPR011008 Dimeric alpha-beta barrel CFE88_RS11300 IPR000873 AMP-dependent synthetase/ligase CFE88_RS11300 IPR020845 AMP-binding, conserved site CFE88_RS11300 IPR025110 AMP-binding enzyme C-terminal domain CFE88_RS11305 IPR000121 PEP-utilising enzyme, C-terminal CFE88_RS11305 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CFE88_RS11305 IPR008279 PEP-utilising enzyme, mobile domain CFE88_RS11305 IPR010121 Pyruvate, phosphate dikinase CFE88_RS11305 IPR013815 ATP-grasp fold, subdomain 1 CFE88_RS11305 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain CFE88_RS11305 IPR018274 PEP-utilising enzyme, active site CFE88_RS11305 IPR023151 PEP-utilising enzyme, conserved site CFE88_RS11310 IPR005177 Bifunctional kinase-pyrophosphorylase CFE88_RS11310 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS11315 IPR006231 Malate:quinone-oxidoreductase CFE88_RS11315 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS11325 IPR000741 Fructose-bisphosphate aldolase, class-I CFE88_RS11325 IPR013785 Aldolase-type TIM barrel CFE88_RS11325 IPR023014 Fructose-bisphosphate aldolase class I, Gram positive bacteria-type CFE88_RS11330 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II CFE88_RS11330 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CFE88_RS11330 IPR016156 FAD/NAD-linked reductase, dimerisation domain CFE88_RS11330 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS11355 IPR005814 Aminotransferase class-III CFE88_RS11355 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS11355 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS11355 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11360 IPR002293 Amino acid/polyamine transporter I CFE88_RS11365 IPR000847 Transcription regulator HTH, LysR CFE88_RS11365 IPR005119 LysR, substrate-binding CFE88_RS11365 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11370 IPR001236 Lactate/malate dehydrogenase, N-terminal CFE88_RS11370 IPR001557 L-lactate/malate dehydrogenase CFE88_RS11370 IPR011304 L-lactate dehydrogenase CFE88_RS11370 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CFE88_RS11370 IPR016040 NAD(P)-binding domain CFE88_RS11370 IPR018177 L-lactate dehydrogenase, active site CFE88_RS11370 IPR022383 Lactate/malate dehydrogenase, C-terminal CFE88_RS11375 IPR000399 TPP-binding enzyme, conserved site CFE88_RS11375 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS11375 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS11375 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS11375 IPR012782 Acetolactate synthase, catabolic CFE88_RS11375 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11375 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11380 IPR005128 Alpha-acetolactate decarboxylase CFE88_RS11385 IPR003710 Ketopantoate reductase ApbA/PanE CFE88_RS11385 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS11385 IPR013328 Dehydrogenase, multihelical CFE88_RS11385 IPR013332 Ketopantoate reductase, N-terminal domain CFE88_RS11385 IPR013752 Ketopantoate reductase, C-terminal domain CFE88_RS11385 IPR016040 NAD(P)-binding domain CFE88_RS11390 IPR003700 Ketopantoate hydroxymethyltransferase CFE88_RS11390 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain CFE88_RS11395 IPR003721 Pantoate-beta-alanine ligase CFE88_RS11395 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11400 IPR003190 Aspartate decarboxylase CFE88_RS11400 IPR009010 Aspartate decarboxylase-like domain CFE88_RS11405 IPR015943 WD40/YVTN repeat-like-containing domain CFE88_RS11415 IPR003828 Protein of unknown function DUF208 CFE88_RS11415 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11425 IPR001295 Dihydroorotate dehydrogenase, conserved site CFE88_RS11425 IPR005719 Dihydroorotate dehydrogenase, class 2 CFE88_RS11425 IPR005720 Dihydroorotate dehydrogenase domain CFE88_RS11425 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CFE88_RS11425 IPR013785 Aldolase-type TIM barrel CFE88_RS11430 IPR011009 Protein kinase-like domain CFE88_RS11430 IPR016477 Fructosamine/Ketosamine-3-kinase CFE88_RS11435 IPR002293 Amino acid/polyamine transporter I CFE88_RS11435 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS11440 IPR003352 Phosphotransferase system, EIIC CFE88_RS11445 IPR022488 Polyphosphate kinase-2-related CFE88_RS11445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11455 IPR010618 Transglycosylase-like CFE88_RS11455 IPR023346 Lysozyme-like domain CFE88_RS11460 IPR002656 Acyltransferase 3 CFE88_RS11460 IPR013830 CFE88_RS11460 CFE88_RS11465 IPR007921 CHAP domain CFE88_RS11475 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CFE88_RS11475 IPR004839 Aminotransferase, class I/classII CFE88_RS11475 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 CFE88_RS11475 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 CFE88_RS11475 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11480 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11480 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS11480 IPR016040 NAD(P)-binding domain CFE88_RS11480 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS11480 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11485 IPR000428 Copper ion binding protein CFE88_RS11485 IPR006121 Heavy metal-associated domain, HMA CFE88_RS11485 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS11485 IPR017969 Heavy-metal-associated, conserved site CFE88_RS11490 IPR001757 Cation-transporting P-type ATPase CFE88_RS11490 IPR006121 Heavy metal-associated domain, HMA CFE88_RS11490 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS11490 IPR008250 P-type ATPase, A domain CFE88_RS11490 IPR017969 Heavy-metal-associated, conserved site CFE88_RS11490 IPR018303 P-type ATPase, phosphorylation site CFE88_RS11490 IPR023214 HAD-like domain CFE88_RS11490 IPR023298 P-type ATPase, transmembrane domain CFE88_RS11490 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS11490 IPR027256 Cation-transporting P-type ATPase, subfamily IB CFE88_RS11500 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS11500 IPR016040 NAD(P)-binding domain CFE88_RS11500 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS11505 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales CFE88_RS11505 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11505 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11505 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11505 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11505 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11510 IPR007167 Ferrous iron transporter FeoA domain CFE88_RS11510 IPR008988 Transcriptional repressor, C-terminal CFE88_RS11515 IPR003373 Ferrous iron transport protein B CFE88_RS11515 IPR006073 GTP binding domain CFE88_RS11515 IPR011640 Ferrous iron transport protein B, C-terminal CFE88_RS11515 IPR011642 Nucleoside recognition Gate CFE88_RS11515 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11515 IPR030389 CFE88_RS11515 CFE88_RS11525 IPR000305 GIY-YIG nuclease superfamily CFE88_RS11530 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CFE88_RS11530 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CFE88_RS11530 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11530 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CFE88_RS11530 IPR023546 Methylated-DNA--protein-cysteine methyltransferase CFE88_RS11535 IPR011554 Hydroxymethylglutaryl-CoA synthase, prokaryotic CFE88_RS11535 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal CFE88_RS11535 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain CFE88_RS11535 IPR016039 Thiolase-like CFE88_RS11540 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II CFE88_RS11540 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type CFE88_RS11540 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain CFE88_RS11540 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain CFE88_RS11540 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain CFE88_RS11540 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site CFE88_RS11545 IPR007921 CHAP domain CFE88_RS11550 IPR023089 YozE-like domain CFE88_RS11555 IPR000847 Transcription regulator HTH, LysR CFE88_RS11555 IPR005119 LysR, substrate-binding CFE88_RS11555 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11560 IPR005538 LrgA/CidA family CFE88_RS11560 IPR023760 Holin-like protein CidA CFE88_RS11565 IPR007300 CidB/LrgB family CFE88_RS11570 IPR000399 TPP-binding enzyme, conserved site CFE88_RS11570 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CFE88_RS11570 IPR012000 Thiamine pyrophosphate enzyme, central domain CFE88_RS11570 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CFE88_RS11570 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11570 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11575 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CFE88_RS11575 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS11575 IPR003352 Phosphotransferase system, EIIC CFE88_RS11575 IPR011055 Duplicated hybrid motif CFE88_RS11575 IPR011299 PTS system glucose-specific IIBC component CFE88_RS11575 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS11585 IPR003675 CAAX amino terminal protease CFE88_RS11590 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS11590 IPR011032 GroES (chaperonin 10)-like CFE88_RS11590 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS11590 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS11590 IPR016040 NAD(P)-binding domain CFE88_RS11595 IPR012336 Thioredoxin-like fold CFE88_RS11595 IPR013766 Thioredoxin domain CFE88_RS11600 IPR003740 Membrane Protein of unknown function DUF161 CFE88_RS11600 IPR019264 Domain of unknown function DUF2179 CFE88_RS11605 IPR013094 Alpha/beta hydrolase fold-3 CFE88_RS11605 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11615 IPR008337 Capsule biosynthesis protein CapB CFE88_RS11615 IPR013221 Mur ligase, central CFE88_RS11620 IPR008338 Capsule biosynthesis protein CapC CFE88_RS11625 IPR019079 Capsule synthesis protein, CapA CFE88_RS11625 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11635 IPR000101 Gamma-glutamyltranspeptidase CFE88_RS11635 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS11640 IPR010651 Sugar transport protein CFE88_RS11645 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU CFE88_RS11645 IPR023064 D-ribose pyranase CFE88_RS11645 IPR023750 RbsD-like domain CFE88_RS11650 IPR002139 Ribokinase CFE88_RS11650 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CFE88_RS11650 IPR011611 Carbohydrate kinase PfkB CFE88_RS11650 IPR011877 Ribokinase, bacterial CFE88_RS11650 IPR029056 Ribokinase-like CFE88_RS11655 IPR000577 CFE88_RS11655 CFE88_RS11655 IPR006000 Xylulokinase CFE88_RS11655 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS11655 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS11655 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS11665 IPR003352 Phosphotransferase system, EIIC CFE88_RS11670 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit CFE88_RS11670 IPR005131 Serine dehydratase beta chain CFE88_RS11670 IPR029009 Allosteric substrate binding domain CFE88_RS11675 IPR004642 Serine dehydratase, alpha subunit CFE88_RS11675 IPR005130 Serine dehydratase-like, alpha subunit CFE88_RS11685 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS11690 IPR005754 Sortase family CFE88_RS11690 IPR023365 Sortase domain CFE88_RS11695 IPR000150 Cof protein CFE88_RS11695 IPR006379 HAD-superfamily hydrolase, subfamily IIB CFE88_RS11695 IPR023214 HAD-like domain CFE88_RS11700 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CFE88_RS11700 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CFE88_RS11700 IPR016040 NAD(P)-binding domain CFE88_RS11700 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS11700 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11705 IPR000415 Nitroreductase-like CFE88_RS11705 IPR029479 Nitroreductase CFE88_RS11715 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11715 IPR016160 Aldehyde dehydrogenase, cysteine active site CFE88_RS11715 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11715 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11715 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11720 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS11720 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS11725 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS11725 IPR031165 CFE88_RS11725 CFE88_RS11730 IPR006127 Periplasmic solute binding protein family CFE88_RS11730 IPR006128 Adhesion lipoprotein CFE88_RS11730 IPR006129 Adhesin B CFE88_RS11735 IPR015590 Aldehyde dehydrogenase domain CFE88_RS11735 IPR016161 Aldehyde/histidinol dehydrogenase CFE88_RS11735 IPR016162 Aldehyde dehydrogenase, N-terminal CFE88_RS11735 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CFE88_RS11750 IPR006153 Cation/H+ exchanger CFE88_RS11755 IPR009164 Fructose-1,6-bisphosphatase class 3 CFE88_RS11755 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11760 IPR032816 CFE88_RS11760 CFE88_RS11765 IPR000594 UBA/THIF-type NAD/FAD binding fold CFE88_RS11765 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF CFE88_RS11770 IPR008867 Thiazole biosynthesis CFE88_RS11770 IPR013785 Aldolase-type TIM barrel CFE88_RS11770 IPR033983 CFE88_RS11770 CFE88_RS11775 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 CFE88_RS11775 IPR010035 ThiS, thiamine-biosynthesis CFE88_RS11775 IPR012675 Beta-grasp domain CFE88_RS11775 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CFE88_RS11780 IPR006076 FAD dependent oxidoreductase CFE88_RS11780 IPR012727 Glycine oxidase ThiO CFE88_RS11780 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS11785 IPR013785 Aldolase-type TIM barrel CFE88_RS11785 IPR022998 Thiamin phosphate synthase superfamily CFE88_RS11790 IPR000849 Sugar phosphate transporter CFE88_RS11790 IPR011701 Major facilitator superfamily CFE88_RS11790 IPR020846 Major facilitator superfamily domain CFE88_RS11795 IPR007138 Antibiotic biosynthesis monooxygenase-like domain CFE88_RS11795 IPR011008 Dimeric alpha-beta barrel CFE88_RS11805 IPR018691 Protein of unknown function DUF2188 CFE88_RS11810 IPR007685 RelA/SpoT CFE88_RS11820 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS11825 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS11825 IPR022742 Putative lysophospholipase CFE88_RS11825 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11835 IPR000551 MerR-type HTH domain CFE88_RS11835 IPR009061 DNA binding domain, putative CFE88_RS11835 IPR011031 Multihaem cytochrome CFE88_RS11840 IPR000849 Sugar phosphate transporter CFE88_RS11840 IPR005267 Glycerol-3-phosphate transporter CFE88_RS11840 IPR011701 Major facilitator superfamily CFE88_RS11840 IPR020846 Major facilitator superfamily domain CFE88_RS11840 IPR021159 Glycerate/sugar phosphate transporter, conserved site CFE88_RS11845 IPR000524 Transcription regulator HTH, GntR CFE88_RS11845 IPR008920 Transcription regulator FadR/GntR, C-terminal CFE88_RS11845 IPR011711 GntR, C-terminal CFE88_RS11845 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11850 IPR000577 CFE88_RS11850 CFE88_RS11850 IPR006002 Gluconate kinase CFE88_RS11850 IPR018483 Carbohydrate kinase, FGGY, conserved site CFE88_RS11850 IPR018484 Carbohydrate kinase, FGGY, N-terminal CFE88_RS11850 IPR018485 Carbohydrate kinase, FGGY, C-terminal CFE88_RS11855 IPR003474 Gluconate transporter CFE88_RS11860 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CFE88_RS11860 IPR005835 Nucleotidyl transferase CFE88_RS11860 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11865 IPR005841 Alpha-D-phosphohexomutase superfamily CFE88_RS11865 IPR005843 Alpha-D-phosphohexomutase, C-terminal CFE88_RS11865 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CFE88_RS11865 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CFE88_RS11865 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CFE88_RS11865 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CFE88_RS11865 IPR016066 Alpha-D-phosphohexomutase, conserved site CFE88_RS11870 IPR001173 Glycosyltransferase 2-like CFE88_RS11870 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11875 IPR001296 Glycosyl transferase, family 1 CFE88_RS11880 IPR000086 NUDIX hydrolase domain CFE88_RS11880 IPR015797 NUDIX hydrolase domain-like CFE88_RS11880 IPR020476 NUDIX hydrolase CFE88_RS11885 IPR001650 Helicase, C-terminal CFE88_RS11885 IPR006935 Helicase/UvrB domain CFE88_RS11885 IPR014001 Helicase, superfamily 1/2, ATP-binding domain CFE88_RS11885 IPR021835 Protein of unknown function DUF3427 CFE88_RS11885 IPR025202 Phospholipase D-like domain CFE88_RS11885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11895 IPR010813 Protein of unknown function DUF1413 CFE88_RS11900 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS11900 IPR016040 NAD(P)-binding domain CFE88_RS11905 IPR002933 Peptidase M20 CFE88_RS11905 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS11905 IPR011650 Peptidase M20, dimerisation domain CFE88_RS11910 IPR003414 Polyphosphate kinase CFE88_RS11910 IPR024953 Polyphosphate kinase middle domain CFE88_RS11910 IPR025198 Polyphosphate kinase N-terminal domain CFE88_RS11910 IPR025200 Polyphosphate kinase C-terminal domain CFE88_RS11915 IPR003695 Ppx/GppA phosphatase CFE88_RS11915 IPR022371 Exopolyphosphatase CFE88_RS11920 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS11920 IPR016040 NAD(P)-binding domain CFE88_RS11920 IPR020904 Short-chain dehydrogenase/reductase, conserved site CFE88_RS11930 IPR008007 Peptidase M42 CFE88_RS11930 IPR023367 Peptidase M42, domain 2 CFE88_RS11935 IPR009736 Protein of unknown function DUF1307 CFE88_RS11940 IPR002932 Glutamate synthase domain CFE88_RS11940 IPR013785 Aldolase-type TIM barrel CFE88_RS11940 IPR024188 Glutamate synthase large subunit-like protein CFE88_RS11940 IPR027283 Glutamate synthase large subunit-like protein, bacteria CFE88_RS11945 IPR003675 CAAX amino terminal protease CFE88_RS11950 IPR003675 CAAX amino terminal protease CFE88_RS11955 IPR003439 ABC transporter-like CFE88_RS11955 IPR003593 AAA+ ATPase domain CFE88_RS11955 IPR017871 ABC transporter, conserved site CFE88_RS11955 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11960 IPR005226 UPF0014 family CFE88_RS11965 IPR011701 Major facilitator superfamily CFE88_RS11965 IPR020846 Major facilitator superfamily domain CFE88_RS11970 IPR002018 Carboxylesterase, type B CFE88_RS11970 IPR019826 Carboxylesterase type B, active site CFE88_RS11970 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11975 IPR002293 Amino acid/polyamine transporter I CFE88_RS11980 IPR014922 Domain of unknown function DUF1801 CFE88_RS11980 IPR016786 Uncharacterised protein YdeI, bacterial CFE88_RS11985 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS11985 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS11985 IPR016040 NAD(P)-binding domain CFE88_RS11990 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal CFE88_RS11990 IPR003346 Transposase, IS116/IS110/IS902 CFE88_RS11995 IPR002559 Transposase, IS4-like CFE88_RS11995 IPR008490 Transposase InsH, N-terminal CFE88_RS11995 IPR014736 Transposase, Tn5-like, core CFE88_RS12000 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CFE88_RS12000 IPR011032 GroES (chaperonin 10)-like CFE88_RS12000 IPR013149 Alcohol dehydrogenase, C-terminal CFE88_RS12000 IPR013154 Alcohol dehydrogenase GroES-like CFE88_RS12000 IPR016040 NAD(P)-binding domain CFE88_RS12000 IPR020843 Polyketide synthase, enoylreductase CFE88_RS12005 IPR000644 CBS domain CFE88_RS12005 IPR003439 ABC transporter-like CFE88_RS12005 IPR003593 AAA+ ATPase domain CFE88_RS12005 IPR005892 Glycine betaine transport ATP-binding subunit CFE88_RS12005 IPR017871 ABC transporter, conserved site CFE88_RS12005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12010 IPR000515 MetI-like domain CFE88_RS12015 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CFE88_RS12020 IPR000515 MetI-like domain CFE88_RS12025 IPR007300 CidB/LrgB family CFE88_RS12025 IPR024891 Antiholin-like protein LrgB CFE88_RS12030 IPR005538 LrgA/CidA family CFE88_RS12030 IPR023736 Antiholin-like protein LrgA CFE88_RS12035 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS12035 IPR007492 LytTR DNA-binding domain CFE88_RS12035 IPR011006 CheY-like superfamily CFE88_RS12040 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12040 IPR010559 Signal transduction histidine kinase, internal region CFE88_RS12040 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CFE88_RS12040 IPR029016 GAF domain-like CFE88_RS12045 IPR011701 Major facilitator superfamily CFE88_RS12045 IPR020846 Major facilitator superfamily domain CFE88_RS12050 IPR003710 Ketopantoate reductase ApbA/PanE CFE88_RS12050 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like CFE88_RS12050 IPR013328 Dehydrogenase, multihelical CFE88_RS12050 IPR013332 Ketopantoate reductase, N-terminal domain CFE88_RS12050 IPR013752 Ketopantoate reductase, C-terminal domain CFE88_RS12050 IPR016040 NAD(P)-binding domain CFE88_RS12055 IPR001708 Membrane insertase OXA1/ALB3/YidC CFE88_RS12055 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS12060 IPR001466 Beta-lactamase-related CFE88_RS12060 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12065 IPR002293 Amino acid/polyamine transporter I CFE88_RS12070 IPR002293 Amino acid/polyamine transporter I CFE88_RS12070 IPR004841 Amino acid permease/ SLC12A domain CFE88_RS12075 IPR004843 Calcineurin-like phosphoesterase domain, apaH type CFE88_RS12075 IPR022302 Phosphoesterase, putative CFE88_RS12075 IPR029052 Metallo-dependent phosphatase-like CFE88_RS12080 IPR016997 Uncharacterised conserved protein UCP032442 CFE88_RS12085 IPR004812 Drug resistance transporter Bcr/CmlA subfamily CFE88_RS12085 IPR011701 Major facilitator superfamily CFE88_RS12085 IPR020846 Major facilitator superfamily domain CFE88_RS12095 IPR004381 Glycerate kinase CFE88_RS12095 IPR018193 Glycerate kinase, flavodoxin-like domain CFE88_RS12105 IPR007267 GtrA-like protein CFE88_RS12110 IPR002524 Cation efflux protein CFE88_RS12110 IPR027470 Cation efflux protein cytoplasmic domain CFE88_RS12115 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CFE88_RS12115 IPR005952 Phosphoglycerate mutase 1 CFE88_RS12115 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS12115 IPR029033 Histidine phosphatase superfamily CFE88_RS12125 IPR001320 Ionotropic glutamate receptor CFE88_RS12125 IPR001638 Extracellular solute-binding protein, family 3 CFE88_RS12130 IPR000515 MetI-like domain CFE88_RS12130 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family CFE88_RS12135 IPR003439 ABC transporter-like CFE88_RS12135 IPR003593 AAA+ ATPase domain CFE88_RS12135 IPR017871 ABC transporter, conserved site CFE88_RS12135 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12135 IPR030679 CFE88_RS12135 CFE88_RS12140 IPR003447 FemABX peptidyl transferase CFE88_RS12140 IPR010978 tRNA-binding arm CFE88_RS12140 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12145 IPR028075 Domain of unknown function with cystatin-like fold DUF4467 CFE88_RS12150 IPR011767 Glutaredoxin active site CFE88_RS12150 IPR012336 Thioredoxin-like fold CFE88_RS12155 IPR013538 Activator of Hsp90 ATPase homologue 1-like CFE88_RS12155 IPR023393 START-like domain CFE88_RS12160 IPR000292 Formate/nitrite transporter CFE88_RS12160 IPR023271 Aquaporin-like CFE88_RS12165 IPR000182 GNAT domain CFE88_RS12165 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12170 IPR000914 Bacterial extracellular solute-binding protein, family 5 CFE88_RS12170 IPR030678 CFE88_RS12170 CFE88_RS12180 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX CFE88_RS12190 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CFE88_RS12190 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site CFE88_RS12190 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CFE88_RS12190 IPR007419 BFD-like [2Fe-2S]-binding domain CFE88_RS12190 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB CFE88_RS12190 IPR017121 Nitrite reductase [NAD(P)H], large subunit CFE88_RS12190 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain CFE88_RS12195 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD CFE88_RS12195 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CFE88_RS12200 IPR000878 Tetrapyrrole methylase CFE88_RS12200 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CFE88_RS12200 IPR006366 Uroporphyrin-III C-methyltransferase CFE88_RS12200 IPR014776 Tetrapyrrole methylase, subdomain 2 CFE88_RS12200 IPR014777 Tetrapyrrole methylase, subdomain 1 CFE88_RS12205 IPR006468 Nitrate reductase, alpha subunit CFE88_RS12205 IPR006656 Molybdopterin oxidoreductase CFE88_RS12205 IPR006657 Molydopterin dinucleotide-binding domain CFE88_RS12205 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CFE88_RS12205 IPR009010 Aspartate decarboxylase-like domain CFE88_RS12205 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CFE88_RS12205 IPR028189 Nitrate reductase, alpha subunit, N-terminal CFE88_RS12210 IPR006547 Nitrate reductase, beta subunit CFE88_RS12210 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS12210 IPR029263 Respiratory nitrate reductase beta, C-terminal CFE88_RS12215 IPR002559 Transposase, IS4-like CFE88_RS12215 IPR008490 Transposase InsH, N-terminal CFE88_RS12215 IPR014736 Transposase, Tn5-like, core CFE88_RS12220 IPR003765 Nitrate reductase chaperone, NarJ CFE88_RS12220 IPR020945 DMSO/Nitrate reductase chaperone CFE88_RS12225 IPR003816 Nitrate reductase, gamma subunit CFE88_RS12225 IPR023234 NarG-like domain CFE88_RS12230 IPR029016 GAF domain-like CFE88_RS12235 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12235 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CFE88_RS12235 IPR017203 Signal transduction histidine kinase, NreB CFE88_RS12240 IPR000792 Transcription regulator LuxR, C-terminal CFE88_RS12240 IPR001789 Signal transduction response regulator, receiver domain CFE88_RS12240 IPR011006 CheY-like superfamily CFE88_RS12240 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12240 IPR016032 Signal transduction response regulator, C-terminal effector CFE88_RS12245 IPR011701 Major facilitator superfamily CFE88_RS12245 IPR020846 Major facilitator superfamily domain CFE88_RS12250 IPR000835 MarR-type HTH domain CFE88_RS12250 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12260 IPR021486 Protein of unknown function DUF3139 CFE88_RS12265 IPR001991 Sodium:dicarboxylate symporter CFE88_RS12265 IPR018107 Sodium:dicarboxylate symporter, conserved site CFE88_RS12270 IPR032613 CFE88_RS12270 CFE88_RS12275 IPR012349 FMN-binding split barrel CFE88_RS12280 IPR009057 Homeodomain-like CFE88_RS12280 IPR018060 DNA binding HTH domain, AraC-type CFE88_RS12280 IPR018062 HTH domain AraC-type, conserved site CFE88_RS12285 IPR013560 Domain of unknown function DUF1722 CFE88_RS12285 IPR016996 Uncharacterised conserved protein UCP032441 CFE88_RS12290 IPR001996 Phosphotransferase system, IIB component, type 1 CFE88_RS12290 IPR003352 Phosphotransferase system, EIIC CFE88_RS12290 IPR010973 Phosphotransferase system, sucrose-specific IIBC component CFE88_RS12290 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CFE88_RS12295 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CFE88_RS12310 IPR019948 Gram-positive anchor CFE88_RS12345 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12350 IPR009614 Toxin YoeB CFE88_RS12350 IPR035095 CFE88_RS12350 CFE88_RS12360 IPR007489 Domain of unknown function DUF536 CFE88_RS12375 IPR007489 Domain of unknown function DUF536 CFE88_RS12385 IPR009614 Toxin YoeB CFE88_RS12385 IPR035095 CFE88_RS12385 CFE88_RS12390 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12410 IPR003477 mRNA interferase PemK-like protein CFE88_RS12410 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS12430 IPR015330 DNA primase/polymerase, bifunctional, N-terminal CFE88_RS12470 IPR013321 Arc-type ribbon-helix-helix CFE88_RS12475 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like CFE88_RS12490 IPR002543 FtsK domain CFE88_RS12490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12505 IPR002543 FtsK domain CFE88_RS12505 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12520 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like CFE88_RS12525 IPR013321 Arc-type ribbon-helix-helix CFE88_RS12560 IPR007489 Domain of unknown function DUF536 CFE88_RS12565 IPR023214 HAD-like domain CFE88_RS12575 IPR005829 Sugar transporter, conserved site CFE88_RS12575 IPR011701 Major facilitator superfamily CFE88_RS12575 IPR020846 Major facilitator superfamily domain CFE88_RS12580 IPR001647 DNA-binding HTH domain, TetR-type CFE88_RS12580 IPR009057 Homeodomain-like CFE88_RS12580 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS12580 IPR013571 Transcription regulator QacR, C-terminal CFE88_RS12580 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CFE88_RS12585 IPR006118 Recombinase, conserved site CFE88_RS12585 IPR006119 Resolvase, N-terminal CFE88_RS12585 IPR006120 Resolvase, HTH domain CFE88_RS12590 IPR006118 Recombinase, conserved site CFE88_RS12590 IPR006119 Resolvase, N-terminal CFE88_RS12590 IPR006120 Resolvase, HTH domain CFE88_RS12590 IPR009057 Homeodomain-like CFE88_RS12595 IPR005650 BlaI transcriptional regulatory family CFE88_RS12595 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12600 IPR001460 Penicillin-binding protein, transpeptidase CFE88_RS12600 IPR008756 Peptidase M56 CFE88_RS12600 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12605 IPR000871 Beta-lactamase, class-A/D CFE88_RS12605 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12605 IPR023650 Beta-lactamase, class-A active site CFE88_RS12610 IPR000525 Initiator Rep protein CFE88_RS12610 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12620 IPR002347 Glucose/ribitol dehydrogenase CFE88_RS12620 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CFE88_RS12620 IPR016040 NAD(P)-binding domain CFE88_RS12625 IPR002559 Transposase, IS4-like CFE88_RS12625 IPR008490 Transposase InsH, N-terminal CFE88_RS12625 IPR014736 Transposase, Tn5-like, core CFE88_RS12630 IPR002524 Cation efflux protein CFE88_RS12630 IPR027470 Cation efflux protein cytoplasmic domain CFE88_RS12635 IPR002109 Glutaredoxin CFE88_RS12635 IPR012336 Thioredoxin-like fold CFE88_RS12640 IPR003735 Metal-sensitive transcriptional repressor CFE88_RS12645 IPR001757 Cation-transporting P-type ATPase CFE88_RS12645 IPR006121 Heavy metal-associated domain, HMA CFE88_RS12645 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS12645 IPR008250 P-type ATPase, A domain CFE88_RS12645 IPR017969 Heavy-metal-associated, conserved site CFE88_RS12645 IPR018303 P-type ATPase, phosphorylation site CFE88_RS12645 IPR023214 HAD-like domain CFE88_RS12645 IPR023298 P-type ATPase, transmembrane domain CFE88_RS12645 IPR023299 P-type ATPase, cytoplasmic domain N CFE88_RS12645 IPR027256 Cation-transporting P-type ATPase, subfamily IB CFE88_RS12650 IPR000428 Copper ion binding protein CFE88_RS12650 IPR006121 Heavy metal-associated domain, HMA CFE88_RS12650 IPR006122 Heavy metal-associated domain, copper ion-binding CFE88_RS12650 IPR017969 Heavy-metal-associated, conserved site CFE88_RS12660 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12670 IPR025882 Toxin Fst CFE88_RS12685 IPR003439 ABC transporter-like CFE88_RS12685 IPR003593 AAA+ ATPase domain CFE88_RS12685 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12685 IPR032781 CFE88_RS12685 CFE88_RS12690 IPR008687 Bacterial mobilisation CFE88_RS12695 IPR005094 Endonuclease relaxase, MobA/VirD2 CFE88_RS12705 IPR000525 Initiator Rep protein CFE88_RS12705 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12710 IPR012963 Protein of unknown function DUF1700 CFE88_RS12720 IPR000989 Replication protein CFE88_RS12725 IPR000390 Small multidrug resistance protein family