CFE88_RS00020 SM00829 Enoylreductase CFE88_RS00060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFE88_RS00060 SM00387 Histidine kinase-like ATPases CFE88_RS00060 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS00065 SM00448 cheY-homologous receiver domain CFE88_RS00065 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS00075 SM00382 ATPases associated with a variety of cellular activities CFE88_RS00085 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS00225 SM00903 Flavin reductase like domain CFE88_RS00315 SM00420 helix_turn_helix, Deoxyribose operon repressor CFE88_RS00330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFE88_RS00330 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CFE88_RS00345 SM00047 Lysozyme subfamily 2 CFE88_RS00395 SM00342 helix_turn_helix, arabinose operon control protein CFE88_RS00430 SM00988 UreE urease accessory protein, N-terminal domain CFE88_RS00490 SM00382 ATPases associated with a variety of cellular activities CFE88_RS00500 SM00852 Probable molybdopterin binding domain CFE88_RS00510 SM00852 Probable molybdopterin binding domain CFE88_RS00535 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS00550 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS00595 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CFE88_RS00595 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CFE88_RS00595 SM00493 CFE88_RS00595 CFE88_RS00610 SM01403 CFE88_RS00610 CFE88_RS00630 SM01382 CFE88_RS00630 CFE88_RS00630 SM01383 CFE88_RS00630 CFE88_RS00645 SM00322 K homology RNA-binding domain CFE88_RS00665 SM01374 CFE88_RS00665 CFE88_RS00670 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CFE88_RS00725 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS00745 SM00662 RNA polymerases D CFE88_RS00755 SM00382 ATPases associated with a variety of cellular activities CFE88_RS00760 SM00382 ATPases associated with a variety of cellular activities CFE88_RS00790 SM00420 helix_turn_helix, Deoxyribose operon repressor CFE88_RS00790 SM01134 CFE88_RS00790 CFE88_RS00810 SM01133 CFE88_RS00810 CFE88_RS00840 SM00829 Enoylreductase CFE88_RS00845 SM00829 Enoylreductase CFE88_RS01035 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFE88_RS01085 SM01133 CFE88_RS01085 CFE88_RS01090 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CFE88_RS01165 SM00357 Cold shock protein domain CFE88_RS01165 SM00382 ATPases associated with a variety of cellular activities CFE88_RS01165 SM00959 Rho termination factor, N-terminal domain CFE88_RS01180 SM00937 CFE88_RS01180 CFE88_RS01200 SM00226 Low molecular weight phosphatase family CFE88_RS01260 SM00382 ATPases associated with a variety of cellular activities CFE88_RS01325 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS01330 SM00155 Phospholipase D. Active site motifs. CFE88_RS01365 SM00487 DEAD-like helicases superfamily CFE88_RS01365 SM00490 helicase superfamily c-terminal domain CFE88_RS01390 SM01005 Alanine racemase, C-terminal domain CFE88_RS01405 SM00331 Sigma factor PP2C-like phosphatases CFE88_RS01405 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFE88_RS01425 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS01425 SM00732 Likely ribonuclease with RNase H fold. CFE88_RS01430 SM00731 SprT homologues. CFE88_RS01480 SM01329 CFE88_RS01480 CFE88_RS01485 SM00917 LeuA allosteric (dimerisation) domain CFE88_RS01530 SM00534 ATPase domain of DNA mismatch repair MUTS family CFE88_RS01535 SM00382 ATPases associated with a variety of cellular activities CFE88_RS01540 SM00881 CoA binding domain CFE88_RS01565 SM00354 helix_turn _helix lactose operon repressor CFE88_RS01575 SM00640 Glycosyl hydrolases family 32 CFE88_RS01585 SM00448 cheY-homologous receiver domain CFE88_RS01585 SM00850 LytTr DNA-binding domain CFE88_RS01595 SM00794 Staphylococcal AgrD protein CFE88_RS01600 SM00793 Accessory gene regulator B CFE88_RS01625 SM00883 Chaperonin 10 Kd subunit CFE88_RS01675 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFE88_RS01680 SM00382 ATPases associated with a variety of cellular activities CFE88_RS01690 SM00382 ATPases associated with a variety of cellular activities CFE88_RS01745 SM01131 CFE88_RS01745 CFE88_RS01755 SM00710 Parallel beta-helix repeats CFE88_RS01790 SM00998 Adenylosuccinate lyase C-terminus CFE88_RS01810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFE88_RS01810 SM00292 breast cancer carboxy-terminal domain CFE88_RS01810 SM00532 Ligase N family CFE88_RS01835 SM00845 GatB domain CFE88_RS01840 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFE88_RS01860 SM00479 CFE88_RS01860 CFE88_RS01905 SM00387 Histidine kinase-like ATPases CFE88_RS01910 SM00421 helix_turn_helix, Lux Regulon CFE88_RS01910 SM00448 cheY-homologous receiver domain CFE88_RS01925 SM00226 Low molecular weight phosphatase family CFE88_RS01990 SM00478 endonuclease III CFE88_RS01990 SM00525 CFE88_RS01990 CFE88_RS02000 SM00382 ATPases associated with a variety of cellular activities CFE88_RS02190 SM00062 Bacterial periplasmic substrate-binding proteins CFE88_RS02190 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CFE88_RS02195 SM00382 ATPases associated with a variety of cellular activities CFE88_RS02240 SM00387 Histidine kinase-like ATPases CFE88_RS02245 SM00421 helix_turn_helix, Lux Regulon CFE88_RS02245 SM00448 cheY-homologous receiver domain CFE88_RS02250 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS02275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS02305 SM00382 ATPases associated with a variety of cellular activities CFE88_RS02415 SM01234 CFE88_RS02415 CFE88_RS02495 SM00047 Lysozyme subfamily 2 CFE88_RS02545 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS02560 SM00450 Rhodanese Homology Domain CFE88_RS02580 SM00363 S4 RNA-binding domain CFE88_RS02635 SM00843 CFE88_RS02635 CFE88_RS02655 SM00830 Chorismate mutase type II CFE88_RS02660 SM00354 helix_turn _helix lactose operon repressor CFE88_RS02675 SM00363 S4 RNA-binding domain CFE88_RS02680 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFE88_RS02685 SM00563 Phosphate acyltransferases CFE88_RS02720 SM00363 S4 RNA-binding domain CFE88_RS02720 SM01390 CFE88_RS02720 CFE88_RS02730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CFE88_RS02745 SM00981 CFE88_RS02745 CFE88_RS02775 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CFE88_RS02775 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CFE88_RS02785 SM00849 Metallo-beta-lactamase superfamily CFE88_RS02795 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS02805 SM00481 DNA polymerase alpha chain like domain CFE88_RS02810 SM00919 Malic enzyme, NAD binding domain CFE88_RS02810 SM01274 CFE88_RS02810 CFE88_RS02845 SM01329 CFE88_RS02845 CFE88_RS02850 SM00448 cheY-homologous receiver domain CFE88_RS02850 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS02855 SM00091 PAS domain CFE88_RS02855 SM00387 Histidine kinase-like ATPases CFE88_RS02855 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS02860 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFE88_RS02860 SM00474 3'-5' exonuclease CFE88_RS02860 SM00475 5'-3' exonuclease CFE88_RS02860 SM00482 DNA polymerase A domain CFE88_RS02865 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CFE88_RS02865 SM01232 CFE88_RS02865 CFE88_RS02880 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFE88_RS02900 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFE88_RS02940 SM00382 ATPases associated with a variety of cellular activities CFE88_RS02940 SM00994 ClpX C4-type zinc finger CFE88_RS02940 SM01086 C-terminal, D2-small domain, of ClpB protein CFE88_RS02970 SM01004 Delta-aminolevulinic acid dehydratase CFE88_RS03060 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFE88_RS03065 SM00382 ATPases associated with a variety of cellular activities CFE88_RS03080 SM01323 CFE88_RS03080 CFE88_RS03100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS03100 SM00954 Region found in RelA / SpoT proteins CFE88_RS03110 SM00287 Bacterial SH3 domain homologues CFE88_RS03110 SM00646 CFE88_RS03110 CFE88_RS03140 SM00382 ATPases associated with a variety of cellular activities CFE88_RS03170 SM00028 Tetratricopeptide repeats CFE88_RS03175 SM00382 ATPases associated with a variety of cellular activities CFE88_RS03180 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CFE88_RS03190 SM00732 Likely ribonuclease with RNase H fold. CFE88_RS03225 SM00796 Allophanate hydrolase subunit 1 CFE88_RS03230 SM00797 Allophanate hydrolase subunit 2 CFE88_RS03240 SM00878 Biotin carboxylase C-terminal domain CFE88_RS03275 SM01103 CFE88_RS03275 CFE88_RS03285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS03300 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFE88_RS03310 SM00849 Metallo-beta-lactamase superfamily CFE88_RS03330 SM00838 Elongation factor G C-terminus CFE88_RS03335 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS03355 SM00271 DnaJ molecular chaperone homology domain CFE88_RS03370 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS03430 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS03440 SM00400 zinc finger CFE88_RS03440 SM00493 CFE88_RS03440 CFE88_RS03460 SM00487 DEAD-like helicases superfamily CFE88_RS03460 SM00490 helicase superfamily c-terminal domain CFE88_RS03465 SM00518 AP endonuclease family 2 CFE88_RS03470 SM00382 ATPases associated with a variety of cellular activities CFE88_RS03530 SM00849 Metallo-beta-lactamase superfamily CFE88_RS03595 SM00450 Rhodanese Homology Domain CFE88_RS03620 SM00841 Elongation factor P, C-terminal CFE88_RS03620 SM01185 CFE88_RS03620 CFE88_RS03625 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFE88_RS03650 SM00878 Biotin carboxylase C-terminal domain CFE88_RS03700 SM00861 Transketolase, pyrimidine binding domain CFE88_RS03725 SM01350 CFE88_RS03725 CFE88_RS03730 SM00642 Alpha-amylase domain CFE88_RS03735 SM00342 helix_turn_helix, arabinose operon control protein CFE88_RS03735 SM00871 Bacterial transcription activator, effector binding domain CFE88_RS03795 SM00363 S4 RNA-binding domain CFE88_RS03800 SM00448 cheY-homologous receiver domain CFE88_RS03800 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS03805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFE88_RS03805 SM00387 Histidine kinase-like ATPases CFE88_RS03805 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS03830 SM00487 DEAD-like helicases superfamily CFE88_RS03830 SM00490 helicase superfamily c-terminal domain CFE88_RS03835 SM00257 Lysin motif CFE88_RS03845 SM00870 CFE88_RS03845 CFE88_RS03855 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS03870 SM00411 bacterial (prokaryotic) histone like domain CFE88_RS03890 SM00562 CFE88_RS03890 CFE88_RS03910 SM00028 Tetratricopeptide repeats CFE88_RS03915 SM00914 CFE88_RS03915 CFE88_RS03950 SM00479 CFE88_RS03950 CFE88_RS03950 SM00491 CFE88_RS03950 CFE88_RS03965 SM00478 endonuclease III CFE88_RS03965 SM00525 CFE88_RS03965 CFE88_RS04005 SM00981 CFE88_RS04005 CFE88_RS04020 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CFE88_RS04020 SM00475 5'-3' exonuclease CFE88_RS04025 SM00844 GA module CFE88_RS04045 SM00932 Scaffold protein Nfu/NifU N terminal CFE88_RS04105 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFE88_RS04105 SM00245 tail specific protease CFE88_RS04125 SM00014 Acid phosphatase homologues CFE88_RS04135 SM00448 cheY-homologous receiver domain CFE88_RS04135 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS04140 SM00387 Histidine kinase-like ATPases CFE88_RS04140 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS04150 SM00861 Transketolase, pyrimidine binding domain CFE88_RS04160 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04185 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04190 SM00327 von Willebrand factor (vWF) type A domain CFE88_RS04220 SM00357 Cold shock protein domain CFE88_RS04240 SM01005 Alanine racemase, C-terminal domain CFE88_RS04260 SM01130 CFE88_RS04260 CFE88_RS04265 SM00859 Semialdehyde dehydrogenase, NAD binding domain CFE88_RS04275 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04300 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04335 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04440 SM01061 CAT RNA binding domain CFE88_RS04450 SM00434 DNA Topoisomerase IV CFE88_RS04455 SM00387 Histidine kinase-like ATPases CFE88_RS04455 SM00433 TopoisomeraseII CFE88_RS04460 SM01207 CFE88_RS04460 CFE88_RS04510 SM00861 Transketolase, pyrimidine binding domain CFE88_RS04540 SM01240 CFE88_RS04540 CFE88_RS04555 SM01060 CFE88_RS04555 CFE88_RS04610 SM00318 Staphylococcal nuclease homologues CFE88_RS04620 SM00421 helix_turn_helix, Lux Regulon CFE88_RS04620 SM00448 cheY-homologous receiver domain CFE88_RS04625 SM00387 Histidine kinase-like ATPases CFE88_RS04635 SM00382 ATPases associated with a variety of cellular activities CFE88_RS04640 SM00155 Phospholipase D. Active site motifs. CFE88_RS04695 SM00644 CFE88_RS04695 CFE88_RS04700 SM00047 Lysozyme subfamily 2 CFE88_RS04775 SM00635 Bacterial Ig-like domain 2 CFE88_RS04900 SM01230 CFE88_RS04900 CFE88_RS04905 SM00422 helix_turn_helix, mercury resistance CFE88_RS04960 SM00853 MutL C terminal dimerisation domain CFE88_RS04960 SM01340 CFE88_RS04960 CFE88_RS04965 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CFE88_RS04965 SM00534 ATPase domain of DNA mismatch repair MUTS family CFE88_RS04980 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS05015 SM00322 K homology RNA-binding domain CFE88_RS05015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS05020 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05025 SM00852 Probable molybdopterin binding domain CFE88_RS05035 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS05060 SM00866 CFE88_RS05060 CFE88_RS05065 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05065 SM00843 CFE88_RS05065 CFE88_RS05070 SM00849 Metallo-beta-lactamase superfamily CFE88_RS05075 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS05075 SM00322 K homology RNA-binding domain CFE88_RS05080 SM01387 CFE88_RS05080 CFE88_RS05085 SM00904 Riboflavin kinase CFE88_RS05115 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS05115 SM00322 K homology RNA-binding domain CFE88_RS05125 SM00479 CFE88_RS05125 CFE88_RS05125 SM00481 DNA polymerase alpha chain like domain CFE88_RS05135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFE88_RS05175 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05175 SM01086 C-terminal, D2-small domain, of ClpB protein CFE88_RS05195 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CFE88_RS05195 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CFE88_RS05195 SM00493 CFE88_RS05195 CFE88_RS05205 SM00881 CoA binding domain CFE88_RS05260 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05260 SM00962 SRP54-type protein, GTPase domain CFE88_RS05260 SM00963 SRP54-type protein, helical bundle domain CFE88_RS05270 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05270 SM00962 SRP54-type protein, GTPase domain CFE88_RS05270 SM00963 SRP54-type protein, helical bundle domain CFE88_RS05275 SM00968 SMC proteins Flexible Hinge Domain CFE88_RS05280 SM00358 Double-stranded RNA binding motif CFE88_RS05280 SM00535 Ribonuclease III family CFE88_RS05290 SM00822 CFE88_RS05290 CFE88_RS05295 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CFE88_RS05310 SM00487 DEAD-like helicases superfamily CFE88_RS05310 SM00490 helicase superfamily c-terminal domain CFE88_RS05315 SM01120 CFE88_RS05315 CFE88_RS05315 SM01121 CFE88_RS05315 CFE88_RS05330 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CFE88_RS05345 SM00220 Serine/Threonine protein kinases, catalytic domain CFE88_RS05345 SM00740 CFE88_RS05345 CFE88_RS05350 SM00331 Sigma factor PP2C-like phosphatases CFE88_RS05350 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CFE88_RS05380 SM00487 DEAD-like helicases superfamily CFE88_RS05380 SM00490 helicase superfamily c-terminal domain CFE88_RS05390 SM01409 CFE88_RS05390 CFE88_RS05395 SM00072 Guanylate kinase homologues. CFE88_RS05420 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CFE88_RS05425 SM00851 MGS-like domain CFE88_RS05425 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CFE88_RS05425 SM01209 CFE88_RS05425 CFE88_RS05430 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CFE88_RS05460 SM00363 S4 RNA-binding domain CFE88_RS05490 SM00363 S4 RNA-binding domain CFE88_RS05515 SM00864 Tubulin/FtsZ family, GTPase domain CFE88_RS05515 SM00865 Tubulin/FtsZ family, C-terminal domain CFE88_RS05520 SM00842 Cell division protein FtsA CFE88_RS05540 SM00740 CFE88_RS05540 CFE88_RS05635 SM00465 GIY-YIG type nucleases (URI domain) CFE88_RS05645 SM00463 Small MutS-related domain CFE88_RS05645 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CFE88_RS05645 SM00534 ATPase domain of DNA mismatch repair MUTS family CFE88_RS05650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFE88_RS05650 SM00481 DNA polymerase alpha chain like domain CFE88_RS05650 SM00483 DNA polymerase X family CFE88_RS05670 SM00873 B3/4 domain CFE88_RS05670 SM00874 tRNA synthetase B5 domain CFE88_RS05670 SM00896 Ferredoxin-fold anticodon binding domain CFE88_RS05680 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFE88_RS05770 SM00878 Biotin carboxylase C-terminal domain CFE88_RS05795 SM00838 Elongation factor G C-terminus CFE88_RS05845 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05850 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS05870 SM00861 Transketolase, pyrimidine binding domain CFE88_RS05905 SM00849 Metallo-beta-lactamase superfamily CFE88_RS05970 SM00382 ATPases associated with a variety of cellular activities CFE88_RS05980 SM01209 CFE88_RS05980 CFE88_RS05980 SM01210 CFE88_RS05980 CFE88_RS05985 SM00798 AICARFT/IMPCHase bienzyme CFE88_RS05985 SM00851 MGS-like domain CFE88_RS06010 SM01211 CFE88_RS06010 CFE88_RS06030 SM01001 AIR carboxylase CFE88_RS06090 SM00047 Lysozyme subfamily 2 CFE88_RS06090 SM00644 CFE88_RS06090 CFE88_RS06095 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS06110 SM01321 CFE88_RS06110 CFE88_RS06225 SM00914 CFE88_RS06225 CFE88_RS06255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CFE88_RS06525 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS06525 SM00924 MgtE intracellular N domain CFE88_RS06540 SM00954 Region found in RelA / SpoT proteins CFE88_RS06550 SM01118 CFE88_RS06550 CFE88_RS06565 SM01321 CFE88_RS06565 CFE88_RS06570 SM01321 CFE88_RS06570 CFE88_RS06605 SM00382 ATPases associated with a variety of cellular activities CFE88_RS06610 SM00382 ATPases associated with a variety of cellular activities CFE88_RS06630 SM00825 Beta-ketoacyl synthase CFE88_RS06645 SM00382 ATPases associated with a variety of cellular activities CFE88_RS06645 SM01086 C-terminal, D2-small domain, of ClpB protein CFE88_RS06730 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CFE88_RS06745 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS06755 SM01298 CFE88_RS06755 CFE88_RS06900 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS06960 SM00382 ATPases associated with a variety of cellular activities CFE88_RS06990 SM00382 ATPases associated with a variety of cellular activities CFE88_RS06990 SM00930 CFE88_RS06990 CFE88_RS07000 SM00493 CFE88_RS07000 CFE88_RS07050 SM00855 Phosphoglycerate mutase family CFE88_RS07100 SM00357 Cold shock protein domain CFE88_RS07145 SM00871 Bacterial transcription activator, effector binding domain CFE88_RS07210 SM00885 D5 N terminal like CFE88_RS07215 SM00942 Primase C terminal 1 (PriCT-1) CFE88_RS07230 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS07235 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS07255 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS07255 SM00357 Cold shock protein domain CFE88_RS07255 SM00955 CFE88_RS07255 CFE88_RS07275 SM01192 CFE88_RS07275 CFE88_RS07275 SM01193 CFE88_RS07275 CFE88_RS07295 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CFE88_RS07360 SM00028 Tetratricopeptide repeats CFE88_RS07385 SM00487 DEAD-like helicases superfamily CFE88_RS07385 SM00490 helicase superfamily c-terminal domain CFE88_RS07405 SM00257 Lysin motif CFE88_RS07410 SM00937 CFE88_RS07410 CFE88_RS07420 SM00957 SecA DEAD-like domain CFE88_RS07420 SM00958 SecA preprotein cross-linking domain CFE88_RS07435 SM00487 DEAD-like helicases superfamily CFE88_RS07435 SM00490 helicase superfamily c-terminal domain CFE88_RS07455 SM00267 diguanylate cyclase CFE88_RS07510 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07560 SM00046 Diacylglycerol kinase catalytic domain (presumed) CFE88_RS07585 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07590 SM00341 Helicase and RNase D C-terminal CFE88_RS07590 SM00487 DEAD-like helicases superfamily CFE88_RS07590 SM00490 helicase superfamily c-terminal domain CFE88_RS07590 SM00956 CFE88_RS07590 CFE88_RS07595 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07615 SM00797 Allophanate hydrolase subunit 2 CFE88_RS07620 SM00796 Allophanate hydrolase subunit 1 CFE88_RS07680 SM00448 cheY-homologous receiver domain CFE88_RS07680 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS07685 SM00387 Histidine kinase-like ATPases CFE88_RS07685 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS07700 SM01091 Transporter associated domain CFE88_RS07740 SM00420 helix_turn_helix, Deoxyribose operon repressor CFE88_RS07740 SM01134 CFE88_RS07740 CFE88_RS07795 SM00833 Cobalamin synthesis protein cobW C-terminal domain CFE88_RS07805 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS07810 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07815 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07825 SM00871 Bacterial transcription activator, effector binding domain CFE88_RS07915 SM00342 helix_turn_helix, arabinose operon control protein CFE88_RS07925 SM00257 Lysin motif CFE88_RS07945 SM00382 ATPases associated with a variety of cellular activities CFE88_RS07950 SM00387 Histidine kinase-like ATPases CFE88_RS07955 SM00448 cheY-homologous receiver domain CFE88_RS07955 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS07985 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08000 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08025 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08040 SM00529 Helix-turn-helix diphteria tox regulatory element CFE88_RS08040 SM00899 CFE88_RS08040 CFE88_RS08045 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08175 SM00422 helix_turn_helix, mercury resistance CFE88_RS08180 SM00478 endonuclease III CFE88_RS08185 SM00836 DALR anticodon binding domain CFE88_RS08185 SM01016 Arginyl tRNA synthetase N terminal dom CFE88_RS08205 SM00829 Enoylreductase CFE88_RS08220 SM01001 AIR carboxylase CFE88_RS08235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CFE88_RS08340 SM00986 Uracil DNA glycosylase superfamily CFE88_RS08340 SM00987 UreE urease accessory protein, C-terminal domain CFE88_RS08395 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CFE88_RS08420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFE88_RS08430 SM00226 Low molecular weight phosphatase family CFE88_RS08535 SM00838 Elongation factor G C-terminus CFE88_RS08535 SM00889 Elongation factor G, domain IV CFE88_RS08555 SM00663 RNA polymerase I subunit A N-terminus CFE88_RS08590 SM00649 Ribosomal protein L11/L12 CFE88_RS08595 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CFE88_RS08620 SM00967 RNA 2'-O ribose methyltransferase substrate binding CFE88_RS08630 SM00840 CFE88_RS08630 CFE88_RS08645 SM00670 Large family of predicted nucleotide-binding domains CFE88_RS08650 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08655 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08655 SM01086 C-terminal, D2-small domain, of ClpB protein CFE88_RS08695 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFE88_RS08790 SM00905 Dihydroneopterin aldolase CFE88_RS08810 SM00382 ATPases associated with a variety of cellular activities CFE88_RS08820 SM00977 TilS substrate C-terminal domain CFE88_RS08825 SM00316 Ribosomal protein S1-like RNA-binding domain CFE88_RS08835 SM00363 S4 RNA-binding domain CFE88_RS08850 SM00487 DEAD-like helicases superfamily CFE88_RS08850 SM00490 helicase superfamily c-terminal domain CFE88_RS08850 SM00982 CFE88_RS08850 CFE88_RS08850 SM01058 CarD-like/TRCF domain CFE88_RS08865 SM01400 CFE88_RS08865 CFE88_RS08900 SM00650 Ribosomal RNA adenine dimethylases CFE88_RS08905 SM00493 CFE88_RS08905 CFE88_RS08925 SM00465 GIY-YIG type nucleases (URI domain) CFE88_RS08985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CFE88_RS08985 SM00493 CFE88_RS08985 CFE88_RS08995 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09060 SM00257 Lysin motif CFE88_RS09075 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09075 SM00930 CFE88_RS09075 CFE88_RS09110 SM00014 Acid phosphatase homologues CFE88_RS09140 SM00833 Cobalamin synthesis protein cobW C-terminal domain CFE88_RS09165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFE88_RS09240 SM00942 Primase C terminal 1 (PriCT-1) CFE88_RS09265 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS09300 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS09300 SM01240 CFE88_RS09300 CFE88_RS09385 SM00855 Phosphoglycerate mutase family CFE88_RS09425 SM00450 Rhodanese Homology Domain CFE88_RS09430 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS09500 SM00470 ParB-like nuclease domain CFE88_RS09550 SM00530 Helix-turn-helix XRE-family like proteins CFE88_RS09560 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09605 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09630 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09670 SM00470 ParB-like nuclease domain CFE88_RS09680 SM01228 CFE88_RS09680 CFE88_RS09700 SM00382 ATPases associated with a variety of cellular activities CFE88_RS09700 SM00760 Bacterial dnaA protein helix-turn-helix domain CFE88_RS09705 SM00480 DNA polymerase III beta subunit CFE88_RS09720 SM00387 Histidine kinase-like ATPases CFE88_RS09720 SM00433 TopoisomeraseII CFE88_RS09725 SM00434 DNA Topoisomerase IV CFE88_RS09765 SM00267 diguanylate cyclase CFE88_RS09780 SM00788 Adenylosuccinate synthetase CFE88_RS09800 SM00448 cheY-homologous receiver domain CFE88_RS09800 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS09805 SM00091 PAS domain CFE88_RS09805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CFE88_RS09805 SM00387 Histidine kinase-like ATPases CFE88_RS09805 SM00388 His Kinase A (phosphoacceptor) domain CFE88_RS09820 SM00849 Metallo-beta-lactamase superfamily CFE88_RS09850 SM00901 CFE88_RS09850 CFE88_RS09965 SM00450 Rhodanese Homology Domain CFE88_RS09965 SM00849 Metallo-beta-lactamase superfamily CFE88_RS09970 SM00450 Rhodanese Homology Domain CFE88_RS09985 SM00226 Low molecular weight phosphatase family CFE88_RS09995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFE88_RS10010 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CFE88_RS10165 SM00957 SecA DEAD-like domain CFE88_RS10165 SM00958 SecA preprotein cross-linking domain CFE88_RS10185 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10260 SM00900 CFE88_RS10260 CFE88_RS10275 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10335 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10340 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10390 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS10390 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10445 SM00729 Elongator protein 3, MiaB family, Radical SAM CFE88_RS10445 SM00876 Biotin and Thiamin Synthesis associated domain CFE88_RS10460 SM01120 CFE88_RS10460 CFE88_RS10555 SM00861 Transketolase, pyrimidine binding domain CFE88_RS10585 SM00450 Rhodanese Homology Domain CFE88_RS10595 SM00867 YceI-like domain CFE88_RS10620 SM00344 helix_turn_helix ASNC type CFE88_RS10710 SM00062 Bacterial periplasmic substrate-binding proteins CFE88_RS10715 SM00382 ATPases associated with a variety of cellular activities CFE88_RS10745 SM00957 SecA DEAD-like domain CFE88_RS10745 SM00958 SecA preprotein cross-linking domain CFE88_RS10780 SM00903 Flavin reductase like domain CFE88_RS10805 SM00047 Lysozyme subfamily 2 CFE88_RS10835 SM00822 CFE88_RS10835 CFE88_RS10895 SM00854 Bacterial capsule synthesis protein PGA_cap CFE88_RS10910 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS11120 SM00098 Alkaline phosphatase homologues CFE88_RS11130 SM00448 cheY-homologous receiver domain CFE88_RS11130 SM00862 Transcriptional regulatory protein, C terminal CFE88_RS11135 SM00387 Histidine kinase-like ATPases CFE88_RS11140 SM00382 ATPases associated with a variety of cellular activities CFE88_RS11190 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS11510 SM00899 CFE88_RS11510 CFE88_RS11625 SM00854 Bacterial capsule synthesis protein PGA_cap CFE88_RS11810 SM00954 Region found in RelA / SpoT proteins CFE88_RS11820 SM00014 Acid phosphatase homologues CFE88_RS11835 SM00422 helix_turn_helix, mercury resistance CFE88_RS11845 SM00345 helix_turn_helix gluconate operon transcriptional repressor CFE88_RS11845 SM00895 CFE88_RS11845 CFE88_RS11885 SM00487 DEAD-like helicases superfamily CFE88_RS11885 SM00490 helicase superfamily c-terminal domain CFE88_RS11900 SM00822 CFE88_RS11900 CFE88_RS11955 SM00382 ATPases associated with a variety of cellular activities CFE88_RS12000 SM00829 Enoylreductase CFE88_RS12005 SM00116 Domain in cystathionine beta-synthase and other proteins. CFE88_RS12005 SM00382 ATPases associated with a variety of cellular activities CFE88_RS12035 SM00448 cheY-homologous receiver domain CFE88_RS12035 SM00850 LytTr DNA-binding domain CFE88_RS12040 SM00387 Histidine kinase-like ATPases CFE88_RS12115 SM00855 Phosphoglycerate mutase family CFE88_RS12125 SM00062 Bacterial periplasmic substrate-binding proteins CFE88_RS12125 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CFE88_RS12135 SM00382 ATPases associated with a variety of cellular activities CFE88_RS12205 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CFE88_RS12235 SM00387 Histidine kinase-like ATPases CFE88_RS12240 SM00421 helix_turn_helix, Lux Regulon CFE88_RS12240 SM00448 cheY-homologous receiver domain CFE88_RS12250 SM00347 helix_turn_helix multiple antibiotic resistance protein CFE88_RS12280 SM00342 helix_turn_helix, arabinose operon control protein CFE88_RS12585 SM00857 Resolvase, N terminal domain CFE88_RS12590 SM00857 Resolvase, N terminal domain CFE88_RS12685 SM00382 ATPases associated with a variety of cellular activities